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At least 1,063 records · Page 59Linked to original sources

USGS2022

Primary deposition and early diagenetic effects on the high saturation accumulation of gas hydrate in a silt dominated reservoir in the Gulf of Mexico

On continental margins, high saturation gas hydrate systems (>60% pore volume) are common in canyon and channel environments within the gas hydrate stability zone, where reservoirs are dominated by coarse-grained, high porosity sand deposits. Recent studies, including the results presented here, suggest that rapidly deposited, silt-dominated channel-levee environments can also host high saturation gas hydrate accumulations. Here we present several sedimentological data sets, including sediment composition, biostratigraphic age from calcareous nannofossils, grain size, total organic carbon (TOC), C/N elemental ratio, δ 13 C-TOC , CaCO 3 , total sulfur (TS), and δ 34 S-TS from sediments collected with pressure cores from a gas hydrate rich, turbidite channel-levee system in the Gulf of Mexico during the 2017 UT-GOM2-1 Hydrate Pressure Coring Expedition. Our results indicate the reservoir is composed of three main lithofacies, which have distinct sediment grain size distributions (type A-silty clay to clayey silt, type B-clayey silt, and type C-sandy silt to silty sand) that are characteristic of variable turbidity current energy regimes within a Pleistocene (< 0.91 Ma) channel-levee environment. We document that the TOC in the sediments of the reservoir is terrestrial in origin and contained within the fine fraction of each lithofacies, while the CaCO 3 fraction is composed of primarily reworked grains, including Cretaceous calcareous nannofossils, and part of the detrital load. The lack of biogenic grains within the finest grained sediment intervals throughout the reservoir suggests interevent hemipelagic sediments are not preserved, resulting in a reservoir sequence of silt dominated, stacked turbidites. We observe two zones of enhanced TS at the top and bottom of the reservoir that correspond with enriched bulk sediment δ 34 S, indicating stalled or slowly advancing paleo-sulfate-methane transition zone (SMTZ) positions likely driven by relative decreases in sedimentation rate. Despite these two diagenetic zones, the low abundance of diagenetic precipitates throughout the reservoir allowed the primary porosity to remain largely intact, thus better preserving primary porosity for subsequent pore-filling gas hydrate. In canyon, channel, and levee environments, early diagenesis may be regulated via sedimentation rates, where high rates result in rapid progression through the SMTZ and minimal diagenetic mineralization and low rates result in the stalling of the SMTZ, enhancing diagenetic mineralization. Here, we observed some enhanced pyritization to implicate potential sedimentation rate changes, but not enough to consume primary porosity, resulting in a high saturation gas hydrate reservoir. These results emphasize the important implications of sedimentary processes, sedimentation rates, and early diagenesis on the distribution of gas hydrate in marine sediments along continental margins.

Alabama, Louisiana, Mississippi↗

USGS2011

Stratigraphy of the Younger Dryas Chronozone and paleoenvironmental implications: Central and Southern Great Plains

The Great Plains of the United States was the setting for some of the earliest research in North America into patterns and changes in the character of late Pleistocene environments and their effects on contemporary human populations. Many localities in the region have well-stratified records of terminal Pleistocene and early Holocene human (Paleoindian) activity and past environments. These have proven important in debates over the character of the Younger Dryas Chronozone (YDC; 11,000–10,000 14 C BP; 12,900–11,700 cal BP) in the continental interior. This paper reviews the lithostratigraphic record of the YDC on the Central and Southern Great Plains and summarizes paleobiological records (largely isotopic). The goal is to determine if there is any uniformity in the timing, character, direction and/or magnitude of changes in depositional environments or broader geomorphic systems before, during or after the YDC in order to address the question of the character of environments through this time. The stratigraphic records of the late Pleistocene to early Holocene transition, and in particular, the stratigraphic records of the YDC vary through time and space. The data clearly show that a host of geomorphic processes produced the terminal Pleistocene and early Holocene stratigraphic records of the Great Plains. Moreover, the YDC is not necessarily manifest as a distinct lithostratigraphic or biostratigraphic entity in these different types of deposits and soils. The various geomorphic systems of the Great Plains did not behave synchronously in response to any common climate driver. These stratigraphic records reflect local environmental conditions and probably a complex response to the reorganization of mid-latitude climates in the terminal Pleistocene and early Holocene.

Montana, Wyoming, Colorado, New Mexico, Texas, Okl↗

USGS2006

Influence of depositional setting and sedimentary fabric on mechanical layer evolution in carbonate aquifers

Carbonate aquifers in fold-thrust belt settings often have low-matrix porosity and permeability, and thus groundwater flow pathways depend on high porosity and permeability fracture and fault zones. Methods from sedimentology and structural geology are combined to understand the evolution of fracture controlled flow pathways and determine their spatial distribution. Through this process bed-parallel pressure-solution surfaces (PS1) are identified as a fracture type which influences fragmentation in peritidal and basinal carbonate, and upon shearing provides a major flow pathway in fold - thrust belt carbonate aquifers. Through stratigraphic analysis and fracture mapping, depositional setting is determined to play a critical role in PS1 localization and spacing where peritidal strata have closer spaced and less laterally continuous PS1 than basinal strata. In the peritidal platform facies, units with planar lamination have bed-parallel pressure-solution seams along mudstone laminae. In contrast, burrowed units of peritidal strata have solution seams with irregular and anastamosing geometries. Laminated units with closely spaced bed-parallel solution seams are more fragmented than bioturbated units with anastamosing solution seams. In the deeper-water depositional environment, pelagic settling and turbidity currents are the dominant sedimentation processes, resulting in laterally continuous deposits relative to the peritidal platform environment. To quantify the fracture patterns in the basinal environment, mechanical layer thickness values were measured from regions of low to high bed dip. The results define a trend in which mechanical layer thickness decreases as layer dip increases. A conceptual model is presented that emphasizes the link between sedimentary and structural fabric for the peritidal and basinal environments, where solution seams localize in mud-rich intervals, and the resulting pressure-solution surface geometry is influenced by sedimentary geometry (i.e., stacked fining upward cycles, burrows, planar laminations). In both facies types, laterally continuous PS1 can behave as mechanical layer boundaries. As layer-parallel slip increases to accommodate shear strain in the fold - thrust belt, more PS1 behave as mechanical layer boundaries. ?? 2005 Elsevier B.V. All rights reserved.

Sedimentary Geology↗

USGS2023

Egg production and endocrine profiles of female whooping cranes (Grus americana) maintained ex situ are improved in naturalized enclosures

Whooping cranes ( Grus americana ) are naturally seasonal breeders and rely on wetland habitats throughout the annual cycle. However, captive cranes are commonly housed in dry outdoor pens, which may lack key environmental stimuli that in turn compromise reproduction. Our study sought to first, assess seasonal patterns of reproductive hormones in successful versus non-successful bird pairs and second, determine endocrine responses to alterations in enclosure environments. Fecal samples were collected from eight crane pairs year-round for 3 consecutive years, once a week during non-breeding season and three times a week during the breeding season. During Year 1, all pairs were housed in traditional dry pens, whereas during January of Year 2 all pairs were moved to either new dry pens (control, n = 4) or ponded pens (wetland, n = 4) and remained in the same pen until the end of the study. Fecal samples were assessed for gonadal (year-round) and adrenal (breeding season only) hormones. Estrogen and progestagen metabolite concentrations were low during non-breeding season in all females. However, as birds transition into a breeding season, gonadal hormone concentrations significantly increased ( p < 0.001) in laying females but not in non-laying individuals. Androgen metabolite concentrations during breeding seasons were higher ( p < 0.001) in males paired with non-laying females, with no variations observed during non-breeding months and within birds of the same reproductive output. We observed significant effect of enclosure environment on ovarian function of female whooping cranes. Specifically, mean estrogen metabolite concentrations increased after birds were moved from dry pen to wetland enclosures (Year 1: 349.1 ± 83.4 ng/g feces; Year 2: 382.7 ± 82.9 ng/g feces; Year 3: 556.5 ± 85.4 ng/g feces, p = 0.008 and 0.019 res p ectively,), whereas those of the control females remained constant. Further, estrogen concentration assessed during breeding season of Year 3 in females housed in wetland pens was higher than birds housed in a dry pen (556.5 ± 85.4 vs 311.7 ± 85.12 ng/g feces; p = 0.019). The number of eggs laid increased in three of the four pairs housed in the wetland pens, while there was no change in egg production in control birds (9 vs. 2 combined number of eggs produced by all pairs in each respective group in Year 3). Finally, moving birds to an enclosure that mimic natural environment did not impact androgen or glucocorticoid excretion. The findings demonstrate that differences in gonadal hormone production between laying and non-laying whooping crane females exist primarily during the breeding season, and that a more natural environment can have a positive influence on ovarian function in female whooping cranes.

Theriogenology Wild↗

USGS2011

No population genetic structure in a widespread aquatic songbird from the Neotropics

Neotropical lowland organisms often show marked population genetic structure, suggesting restricted migration among populations. However, most phylogeographic studies have focused on species inhabiting humid forest interior. Little attention has been devoted to the study of species with ecologies conducive to dispersal, such as those of more open and variable environments associated with watercourses. Using mtDNA sequences, we examined patterns of genetic variation in a widely distributed Neotropical songbird of aquatic environments, the Yellow-hooded Blackbird (Icteridae, Chrysomus icterocephalus ). In contrast to many forest species, Yellow-hooded Blackbirds showed no detectable genetic structure across their range, which includes lowland populations on both sides of the Andes, much of northeastern South America, Amazonia, as well as a phenotypically distinct highland population in Colombia. A coalescent-based analysis of the species indicated that its effective population size has increased considerably, suggesting a range expansion. Our results support the hypothesis that species occurring in open habitats and tracking temporally dynamic environments should show increased dispersal propensities (hence gene flow) relative to species from closed and more stable environments. The phenotypic and behavioral variation among populations of our study species appears to have arisen recently and perhaps in the face of gene flow.

Molecular Phylogenetics and Evolution↗

USGS1997

Lithofacies and seismic-reflection interpretation of temperate glacimarine sedimentation in Tarr Inlet, Glacier Bay, Alaska

High-resolution seismic-reflection profiles of sediment fill within Tart Inlet of Glacier Bay, Alaska, show seismic facies changes with increasing distance from the glacial termini. Five types of seismic facies are recognized from analysis of Huntec and minisparker records, and seven lithofacies are determined from detailed sedimentologic study of gravity-, vibro- and box-cores, and bottom grab samples. Lithofacies and seismic facies associations, and fjord-floor morphology allow us to divide the fjord into three sedimentary environments: ice-proximal, iceberg-zone and ice-distal. The ice-proximal environment, characterized by a morainal-bank depositional system, can be subdivided into bank-back, bank-core and bank-front subenvironments, each of which is characterized by a different depositional subsystem. A bank-back subsystem shows chaotic seismic facies with a mounded surface, which we infer consists mainly of unsorted diamicton and poorly sorted coarse-grained sediments. A bank-core depositional subsystem is a mixture of diamicton, rubble, gravel, sand and mud. Seismic-reflection records of this subsystem are characterized by chaotic seismic facies with abundant hyperbolic diffractions and a hummocky surface. A bank-front depositional subsystem consists of mainly stratified and massive sand, and is characterized by internal hummocky facies on seismic-reflection records with significant surface relief and sediment gravity flow channels. The depositional system formed in the iceberg-zone environment consists of rhythmically laminated mud interbedded with thin beds of weakly stratified diamicton and stratified or massive sand and silt. On seismic-reflection profiles, this depositional system is characterized by discontinuously stratified facies with multiple channels on the surface in the proximal zone and a single channel on the largely flat sediment surface in the distal zone. The depositional system formed in the ice-distal environment consists of interbedded homogeneous or laminated mud and massive or stratified sand and coarse silt. This depositional system shows continuously stratified seismic facies with smooth and flat surfaces on minisparker records, and continuously stratified seismic facies which are interlayered with thin weakly stratified facies on Huntec records.

Marine Geology↗

USGS1999

PAH refractory index as a source discriminant of hydrocarbon input from crude oil and coal in Prince William Sound, Alaska

Geochemical correlation and differentiation of hydrocarbons from crude oils and coals is difficult. The complex mixture of the hydrocarbon constituents and the dynamic nature of these constituents in the environment as they weather contribute to this difficulty A new parameter, the polycyclic aromatic hydrocarbon (PAH) refractory index, is defined here to help in this correlation. The PAH refractory index is a ratio of two of the most refractory constituents of most crude oils, namely triaromatic steranes and monomethylchrysenes. These are among the most persistent compounds in oil after deposition in the environment and thus retain reliably the signature of the original petroleum input. This index is utilized in Prince William Sound (PWS) to differentiate three different oils, as well as to provide evidence that coal, not oil, is the dominant source of the PAHs which are prominent constituents of marine sediments from PWS and the Gulf of Alaska.Geochemical correlation and differentiation of hydrocarbons from crude oils and coals is difficult. The complex mixture of the hydrocarbon constituents and the dynamic nature of these constituents in the environment as they weather contribute to this difficulty. A new parameter, the polycyclic aromatic hydrocarbon (PAH) refractory index, is defined here to help in this correlation. The PAH refractory index is a ratio of two of the most refractory constituents of most crude oils, namely triaromatic steranes and monomethylchrysenes. These are among the most persistent compounds in oil after deposition in the environment and thus retain reliably the signature of the original petroleum input. This index is utilized in Prince William Sound (PWS) to differentiate three different oils, as well as to provide evidence that coal, not oil, is the dominant source of the PAHs which are prominent constituents of marine sediments from PWS and the Gulf of Alaska.

Conference Paper↗

USGS2009

Chlorine-36 as a tracer of perchlorate origin

Perchlorate (ClO 4 − ) is ubiquitous in the environment. It is produced naturally by atmospheric photochemical reactions, and also is synthesized in large quantities for military, aerospace, and industrial applications. Nitrate-enriched salt deposits of the Atacama Desert (Chile) contain high concentrations of natural ClO 4 − , and have been exported worldwide since the mid-1800s for use in agriculture. The widespread introduction of synthetic and agricultural ClO 4 − into the environment has contaminated numerous municipal water supplies. Stable isotope ratio measurements of Cl and O have been applied for discrimination of different ClO 4 − sources in the environment. This study explores the potential of 36 Cl measurements for further improving the discrimination of ClO 4 − sources. Groundwater and desert soil samples from the southwestern United States (U.S.) contain ClO 4 − having high 36 Cl abundances ( 36 Cl/Cl = 3100 × 10 −15 to 28,800 × 10 −15 ), compared with those from the Atacama Desert ( 36 Cl/Cl = 0.9 × 10 −15 to 590 × 10 −15 ) and synthetic ClO 4 − reagents and products ( 36 Cl/Cl = 0.0 × 10 −15 to 40 × 10 −15 ). In conjunction with stable Cl and O isotope ratios, 36 Cl data provide a clear distinction among three principal ClO 4 − source types in the environment of the southwestern U.S.

Environmental Science & Technology↗

USGS1999

Occurrence and behavior of the herbicide Prometon in the hydrologic system

Prometon, a triazine herbicide, is used for total vegetation control on industrial sites, on noncrop areas on farms, in and under asphalt, and to a small extent by homeowners. Prometon has often been detected in surface water and groundwater in studies reported in the literature, but its presence is seldom discussed, partly because of its infrequent inclusion on lists of herbicides used in either agricultural or urban areas. In recent large-scale studies by the U.S. Geological Survey, prometon has been the most commonly detected herbicide in surface water and groundwater in urban areas and the third and fourth most commonly detected herbicide in groundwater and surface water, respectively, in agricultural areas. It also has been detected in rain. The frequent detection of prometon in the environment is discussed in relation to its use practices and predicted environmental behavior. Prometon is compared to atrazine, a structurally similar agricultural triazine herbicide that is one of the most studied and most commonly detected herbicides found in the hydrologic environment. The environmental data presented here demonstrate the wide-scale occurrence of prometon in all components of the hydrologic system, particularly in the surface water and groundwater of urban areas.Prometon, a triazine herbicide, is used for total vegetation control on industrial sites, on noncrop areas on farms, in and under asphalt, and to a small extent by homeowners. Prometon has often been detected in surface water and groundwater in studies reported in the literature, but its presence is seldom discussed, partly because of its infrequent inclusion on lists of herbicides used in either agricultural or urban areas. In recent large-scale studies by the U.S. Geological Survey, prometon has been the most commonly detected herbicide in surface water and groundwater in urban areas and the third and fourth most commonly detected herbicide in groundwater and surface water, respectively, in agricultural areas. It also has been detected in rain. The frequent detection of prometon in the environment is discussed in relation to its use practices and predicted environmental behavior. Prometon is compared to atrazine, a structurally similar agricultural triazine herbicide that is one of the most studied and most commonly detected herbicides found in the hydrologic environment. The environmental data presented here demonstrate the wide-scale occurrence of prometon in all components of the hydrologic system, particularly in the surface water and groundwater of urban areas.

Environmental Science & Technology↗

USGS2003

Foraminifera as bioindicators in coral reef assessment and monitoring: The foram index

Coral reef communities are threatened worldwide. Resource managers urgently need indicators of the biological condition of reef environments that can relate data acquired through remote-sensing, water-quality and benthic-community monitoring to stress responses in reef organisms. The "FORAM" (Foraminifera in Reef Assessment and Monitoring) Index (FI) is based on 30 years of research on reef sediments and reef-dwelling larger foraminifers. These shelled protists are ideal indicator organisms because: ??? Foraminifers are widely used as environmental and paleoenvironmental indicators in many contexts; ??? Reef-building, zooxanthellate corals and foraminifers with algal symbionts have similar water-quality requirements; ??? The relatively short life spans of foraminifers as compared with long-lived colonial corals facilitate differentiation between long-term water-quality decline and episodic stress events; ??? Foraminifers are relatively small and abundant, permitting statistically significant sample sizes to be collected quickly and relatively inexpensively, ideally as a component of comprehensive monitoring programs; and ??? Collection of foraminifers has minimal impact on reef resources. USEPA guidelines for ecological indicators are used to evaluate the FI. Data required are foraminiferal assemblages from surface sediments of reef-associated environments. The FI provides resource managers with a simple procedure for determining the suitability of benthic environments for communities dominated by algal symbiotic organisms. The FI can be applied independently, or incorporated into existing or planned monitoring efforts. The simple calculations require limited computer capabilities and therefore can be applied readily to reef-associated environments worldwide. In addition, the foraminiferal shells collected can be subjected to morphometric and geochemical analyses in areas of suspected heavy-metal pollution, and the data sets for the index can be used with other monitoring data in detailed multidimensional assessments.

Environmental Monitoring and Assessment↗

USGS2002

Satellite-based detection of global urban heat-island temperature influence

This study utilizes a satellite-based methodology to assess the urban heat-island influence during warm season months for over 4400 stations included in the Global Historical Climatology Network of climate stations. The methodology includes local and regional satellite retrievals of an indicator of the presence green photosynthetically active vegetation at and around the stations. The difference in local and regional samples of the normalized difference vegetation index (NDVI) is used to estimate differences in mean air temperature. Stations classified as urban averaged 0.90??C (N. Hemisphere) and 0.92??C (S. Hemisphere) warmer than the surrounding environment on the basis of the NDVI-derived temperature estimates. Additionally, stations classified as rural averaged 0.19??C (N. Hemisphere) and 0.16??C (S. Hemisphere) warmer than the surrounding environment. The NDVI-derived temperature estimates were found to be in reasonable agreement with temperature differences observed between climate stations. The results suggest that satellite-derived data sets can be used to estimate the urban heat-island temperature influence on a global basis and that a more detailed analysis of rural stations and their surrounding environment may be necessary to assure that temperature trends derived from assumed rural environments are not influenced by changes in land use/land cover. Copyright 2002 by the American Geophysical Union.

Journal of Geophysical Research D: Atmospheres↗

USGS2012

Hydrous carbonates on Mars?: Evidence from Mariner 6/7 infrared spectrometer and ground‐based telescopic spectra

Absorption features at 2.28 and 5.4 μm identified in Mariner 6/7 infrared spectrometer and terrestrial telescopic spectra are consistent with the spectra of hydrous magnesium carbonates such as hydromagnesite and artinite. Spectral characteristics of these hydrous carbonates are different from those of the anhydrous carbonates, as the former do not have the strong spectral features typically associated with anhydrous carbonates such as calcite and siderite. Theoretical mixing indicates that, depending on the type of hydrous carbonate, 10–20 wt % can be incorporated into the regolith without contradicting the spectral observations or the Viking x ray fluorescence chemical analysis. Hydrous carbonates form as weathering products of mafic minerals in the presence of H 2 O and CO 2 , even in the Antarctic. Their formation as evaporite minerals from either original magmas or hydrothermally altered rocks is consistent with the Martian environment, provided liquid water is or has been at least transiently present. On Earth, formation of hydrous Mg carbonates is associated with the production of amorphous iron oxides, which is consistent with both the environment and the inferred surface mineralogy of Mars. These minerals are about 60 wt % H 2 O, CO 3 , and OH; if they are abundant everywhere at the 10% level, then about 6% of the surface weight could be volatiles bound in this type of mineral. Although the stability of hydrous carbonates in a Martian environment is uncertain, there may be kinetic factors inhibiting the dehydration of these minerals, which may persist metastably in the current environment. Although the spectroscopic evidence for anhydrous carbonates is scant, the possible presence of hydrous carbonates provides an appealing mechanism for the existence of carbonates on Mars.

Journal of Geophysical Research↗

USGS2020

Environmental gradients of selection for an alpine-obligate bird, the white-tailed ptarmigan (Lagopus leucura)

The warming climate will expose alpine species adapted to a highly seasonal, harsh environment to novel environmental conditions. A species can shift their distribution, acclimate, or adapt in response to a new climate. Alpine species have little suitable habitat to shift their distribution, and the limits of acclimation will likely be tested by climate change in the long-term. Adaptive genetic variation may provide the raw material for species to adapt to this changing environment. Here, we use a genomic approach to describe adaptive divergence in an alpine-obligate species, the white-tailed ptarmigan ( Lagopus leucura ), a species distributed from Alaska to New Mexico, across an environmentally variable geographic range. Previous work has identified genetic structure and morphological, behavioral, and physiological differences across the species’ range; however, those studies were unable to determine the degree to which adaptive divergence is correlated with local variation in environmental conditions. We used a genome-wide dataset generated from 95 white-tailed ptarmigan distributed throughout the species’ range and genotype–environment association analyses to identify the genetic signature and environmental drivers of local adaptation. We detected associations between multiple environmental gradients and candidate adaptive loci, suggesting ptarmigan populations may be locally adapted to the plant community composition, elevation, local climate, and to the seasonality of the environment. Overall, our results suggest there may be groups within the species’ range with genetic variation that could be essential for adapting to a changing climate and helpful in guiding conservation action.

Alaska, Washington, Montana, Colorado, New Mexico,↗

USGS2001

Partitioning sources of variation in vertebrate species richness

Aim: To explore biogeographic patterns of terrestrial vertebrates in Maine, USA using techniques that would describe local and spatial correlations with the environment. Location: Maine, USA. Methods: We delineated the ranges within Maine (86,156 km2) of 275 species using literature and expert review. Ranges were combined into species richness maps, and compared to geomorphology, climate, and woody plant distributions. Methods were adapted that compared richness of all vertebrate classes to each environmental correlate, rather than assessing a single explanatory theory. We partitioned variation in species richness into components using tree and multiple linear regression. Methods were used that allowed for useful comparisons between tree and linear regression results. For both methods we partitioned variation into broad-scale (spatially autocorrelated) and fine-scale (spatially uncorrelated) explained and unexplained components. By partitioning variance, and using both tree and linear regression in analyses, we explored the degree of variation in species richness for each vertebrate group that Could be explained by the relative contribution of each environmental variable. Results: In tree regression, climate variation explained richness better (92% of mean deviance explained for all species) than woody plant variation (87%) and geomorphology (86%). Reptiles were highly correlated with environmental variation (93%), followed by mammals, amphibians, and birds (each with 84-82% deviance explained). In multiple linear regression, climate was most closely associated with total vertebrate richness (78%), followed by woody plants (67%) and geomorphology (56%). Again, reptiles were closely correlated with the environment (95%), followed by mammals (73%), amphibians (63%) and birds (57%). Main conclusions: Comparing variation explained using tree and multiple linear regression quantified the importance of nonlinear relationships and local interactions between species richness and environmental variation, identifying the importance of linear relationships between reptiles and the environment, and nonlinear relationships between birds and woody plants, for example. Conservation planners should capture climatic variation in broad-scale designs; temperatures may shift during climate change, but the underlying correlations between the environment and species richness will presumably remain.

Journal of Biogeography↗

USGS2002

A review of bacterial methyl halide degradation: Biochemistry, genetics and molecular ecology

Methyl halide‐degrading bacteria are a diverse group of organisms that are found in both terrestrial and marine environments. They potentially play an important role in mitigating ozone depletion resulting from methyl chloride and methyl bromide emissions. The first step in the pathway(s) of methyl halide degradation involves a methyltransferase and, recently, the presence of this pathway has been studied in a number of bacteria. This paper reviews the biochemistry and genetics of methyl halide utilization in the aerobic bacteria Methylobacterium chloromethanicum CM4 T , Hyphomicrobium chloromethanicum CM2 T , Aminobacter strain IMB‐1 and Aminobacter strain CC495. These bacteria are able to use methyl halides as a sole source of carbon and energy, are all members of the α ‐Proteobacteria and were isolated from a variety of polluted and pristine terrestrial environments. An understanding of the genetics of these bacteria identified a unique gene ( cmuA ) involved in the degradation of methyl halides, which codes for a protein (CmuA) with unique methyltransferase and corrinoid functions. This unique functional gene, cmuA , is being used to develop molecular ecology techniques to examine the diversity and distribution of methyl halide‐utilizing bacteria in the environment and hopefully to understand their role in methyl halide degradation in different environments. These techniques will also enable the detection of potentially novel methyl halide‐degrading bacteria.

Environmental Microbiology↗

USGS2016

A microbial arsenic cycle in sediments of an acidic mine impoundment: Herman Pit, Clear Lake, California

The involvement of prokaryotes in the redox reactions of arsenic occurring between its +5 [arsenate; As(V)] and +3 [arsenite; As(III)] oxidation states has been well established. Most research to date has focused upon circum-neutral pH environments (e.g., freshwater or estuarine sediments) or arsenic-rich “extreme” environments like hot springs and soda lakes. In contrast, relatively little work has been conducted in acidic environments. With this in mind we conducted experiments with sediments taken from the Herman Pit, an acid mine drainage impoundment of a former mercury (cinnabar) mine. Due to the large adsorptive capacity of the abundant Fe(III)-rich minerals, we were unable to initially detect in solution either As(V) or As(III) added to the aqueous phase of live sediment slurries or autoclaved controls, although the former consumed added electron donors (i.e., lactate, acetate, hydrogen), while the latter did not. This prompted us to conduct further experiments with diluted slurries using the live materials from the first incubation as inoculum. In these experiments we observed reduction of As(V) to As(III) under anoxic conditions and reduction rates were enhanced by addition of electron donors. We also observed oxidation of As(III) to As(V) in oxic slurries as well as in anoxic slurries amended with nitrate. We noted an acid-tolerant trend for sediment slurries in the cases of As(III) oxidation (aerobic and anaerobic) as well as for anaerobic As(V) reduction. These observations indicate the presence of a viable microbial arsenic redox cycle in the sediments of this extreme environment, a result reinforced by the successful amplification of arsenic functional genes ( aioA , and arrA ) from these materials.

California↗

USGS2017

Distance and environmental difference in alpine plant communities

Differences in plant communities are a response to the abiotic environment, species interactions, and dispersal. The role of geographic distance relative to the abiotic environment is explored for alpine tundra vegetation from 319 plots of four regions along the Rocky Mountain cordillera in the USA. The site by species data were ordinated using nonmetric multidimensional scaling to produce dependent variables for use in best-subsets regression. For independent variables, observations of local topography and microtopography were used as environmental indicators. Two methods of including distance in studies of vegetation and environment are used and contrasted. The relative importance of geographic distance in accounting for the pattern of alpine tundra similarity indicates that location is a factor in plant community composition. Mantel tests provide direct correlations between difference and distance but have known weaknesses. Moran spatial eigenvectors used in regression based approaches have greater geographic specificity, but require another step, ordination, in creating a vegetation variable. While the spatial eigenvectors are generally preferable, where species–environment relations are weak, as seems to be the case for the alpine sites studied here, the fewer abstractions of the Mantel test may be useful.

Rocky Mountain cordillera↗

USGS2016

Vive la résistance: genome-wide selection against introduced alleles in invasive hybrid zones

Evolutionary and ecological consequences of hybridization between native and invasive species are notoriously complicated because patterns of selection acting on non-native alleles can vary throughout the genome and across environments. Rapid advances in genomics now make it feasible to assess locus-specific and genome-wide patterns of natural selection acting on invasive introgression within and among natural populations occupying diverse environments. We quantified genome-wide patterns of admixture across multiple independent hybrid zones of native westslope cutthroat trout and invasive rainbow trout, the world's most widely introduced fish, by genotyping 339 individuals from 21 populations using 9380 species-diagnostic loci. A significantly greater proportion of the genome appeared to be under selection favouring native cutthroat trout (rather than rainbow trout), and this pattern was pervasive across the genome (detected on most chromosomes). Furthermore, selection against invasive alleles was consistent across populations and environments, even in those where rainbow trout were predicted to have a selective advantage (warm environments). These data corroborate field studies showing that hybrids between these species have lower fitness than the native taxa, and show that these fitness differences are due to selection favouring many native genes distributed widely throughout the genome.

Proceedings of the Royal Society B: Biological Sci↗