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3D semantic mapping of surface geological features

Semantic mapping in 3D is fundamental to a wide range of geoscientific studies and applications, including geomorphology, hazard assessment, and environmental monitoring. However, automatically segmenting geological features from large-scale photogrammetric datasets remains a significant challenge. We present a methodology to address this gap. Using overlapping images collected over environments of interest, Structure-from-Motion (SfM) produces georeferenced point clouds and estimates camera poses. Existing large vision models, such as Segment Anything Model, segment objects in the images, generating pixel-segmentation associations. To produce pixel-point associations, we project the points back onto the camera image planes. As objects are independently segmented across multiple images with different perspectives, we develop a segmentation mosaicking algorithm to build probabilistic point-segmentation associations that combines the pixel-segmentation associations and pixel-point associations. Our methodology is validated using both synthetic data generated by Kubric and real-world UAV-SfM data. The implementation is designed to be compatible with existing SfM software, including Agisoft and OpenDroneMap, for photogrammetry mapping in geoscience studies. As a case study, we apply our method to the semantic mapping of precariously balanced rocks (PBRs), which provide upper-bound constraints on historical ground motion shaking intensity. To support object-level identification of PBRs, we additionally integrated Grounding DINO, enabling text-prompted segmentation of features of interest within UAV imagery. This case study demonstrates the effectiveness of our method in generating a 3D semantic map of PBRs, enabling spatial distribution of PBR fragility for earthquake hazard analysis.

Computers & Geosciences

Factors influencing distribution of Coccidioides immitis in soil, Washington State, 2016

Coccidioides immitis and Coccidioides posadasii are causative agents of Valley fever, a serious fungal disease endemic to regions with hot, arid climate in the United States, Mexico, and Central and South America. The environmental niche of Coccidioide s spp. is not well defined, and it remains unknown whether these fungi are primarily associated with rodents or grow as saprotrophs in soil. To better understand the environmental reservoir of these pathogens, we used a systematic soil sampling approach, quantitative PCR (qPCR), culture, whole-genome sequencing, and soil chemical analysis to identify factors associated with the presence of C. immitis at a known colonization site in Washington State linked to a human case in 2010. We found that the same strain colonized an area of over 46,000 m 2 and persisted in soil for over 6 years. No association with rodent burrows was observed, as C. immitis DNA was as likely to be detected inside rodent holes as it was in the surrounding soil. In addition, the presence of C. immitis DNA in soil was correlated with elevated levels of boron, calcium, magnesium, sodium, and silicon in soil leachates. We also observed differences in the microbial communities between C. immitis -positive and -negative soils. Our artificial soil inoculation experiments demonstrated that C. immitis can use soil as a sole source of nutrients. Taken together, these results suggest that soil parameters need to be considered when modeling the distribution of this fungus in the environment.

Washington

Ecohydrological response of a forested headwater catchment to a flash drought in the Southeastern U.S.

Flash droughts differ from traditionally defined droughts in their rapidity of intensification and often associated high vapor-pressure deficit. These droughts can lead to declines in streamflow and water table depth and induce water stress to vegetation at a greater rate than droughts that manifest over longer periods. However, little is known regarding the response of forested environments to flash drought because most studies of impacts have been conducted in agricultural settings. In this study we investigated water-use patterns of riparian trees using sap flow methods and examined the role of groundwater as a source of moisture over three periods that were delimited by antecedent soil moisture conditions. For a longer-term perspective we also examine monthly streamflow over the 35-year record. We observed that trees at only one monitoring plot showed a decrease in water use relative to evaporative demand during a flash drought. Total reverse sap flow (flow toward the roots rather than the canopy) greatly increased during the flash drought period, suggesting the likely occurrence of hydraulic redistribution to the excessively dry soils. Over the drought period groundwater became a more dominant source of moisture for sustaining forest water use. Monthly mean streamflow during the flash drought approached levels observed in past multiyear droughts. This is the first study, to our knowledge, to specifically investigate the response of multiple water budget components to flash drought in a humid forest. As more studies are conducted, a better understanding of the range of expected responses are likely to emerge.

Georgia

3-D geological modeling for numerical flow simulation studies of gas hydrate reservoirs at the Kuparuk State 7-11-12 Pad in the Prudhoe Bay Unit on the Alaska North Slope

Accurate reservoir evaluation requires reliable three-dimensional (3-D) geological models. This study conducted 3-D geological modeling for numerical flow simulation of the B1 sand gas hydrate reservoir at the Kuparuk State 7-11-12 pad, Prudhoe Bay Unit, Alaska North Slope. The model integrates well logs, core, and seismic data to address spatial heterogeneity in geological structures and reservoir properties. Two modeling types were performed: structural framework modeling and petrophysical property modeling. For structural framework modeling, seismic data and well log markers were used to reproduce subsurface structures characterized by a normal fault system. A volume-based modeling algorithm and stair-step gridding were applied. The resulting 3-D model comprised 2,640,000 grid cells across 264 layers, including seven fault grids. For petrophysical property modeling, total porosity was initially modeled using sequential Gaussian simulation with collocated cokriging. To reproduce the upward coarsening of the B1 sand, upscaled log-derived total porosity and a 3-D trend depicting total porosity variation were used as primary and secondary data, respectively. Gas hydrate saturation distribution was modeled similarly, with secondary data from estimated porosity distribution and seismic-derived acoustic impedance map enhancing accuracy. Results indicate higher gas hydrate saturation in the upper part of the B1 sand and areas with higher acoustic impedance. Intrinsic permeability was modeled from the total porosity and clay-bound water volume, and effective permeability was derived from the gas hydrate saturation and intrinsic permeability distributions based on the “Tokyo model”. Effective permeability distributions were influenced by the total porosity, gas hydrate saturation, and intrinsic permeability. Within the same layer, higher gas hydrate saturation leads to decreased effective permeability. In total, 100 sets of multiple scenarios were prepared, providing input data for dynamic flow simulations to evaluate the effects of lateral heterogeneity in reservoir properties and the hydraulic characteristics of faults on production behavior for preassessment before the long-term production test.

Alaska

Time varying crustal anisotropy at Whakaari/White Island volcano

Whakaari/White Island has been the most active New Zealand volcano in the 21st century, producing small phreatic and phreatomagmatic eruptions, which are hard to predict. The most recent eruption occurred in 2019, tragically claiming the lives of 22 individuals and causing numerous injuries. We employed shear-wave splitting analyses to investigate variations in anisotropy during quiescence, unrest, and an eruption between 2018 and 2020. We examined spatial and temporal variations in 7972 shear-wave splitting measurements and derived 1402 V p /IV s ratio measurements. Comparing shear-wave splitting parameters from similar earthquake paths across different times indicates that the observed temporal changes are unlikely to result from variations in earthquake paths through media with spatial variability. Instead, these changes may stem from variations in anisotropy over time, likely caused by changes in crack alignment due to stress or varying fluid content.

Whakaari/White Island volcano

Open-source gravity reduction workflows for geothermal resource assessment

Potential-field geophysical data such as gravity can enhance understanding of geothermal resources at all stages of the resource life cycle, including assessment, exploration, development, and monitoring, and at multiple scales, from the reservoir scale to regional scale. However, to make gravity data useful for geothermal resource characterization, several processing steps are required to isolate the effects of density variations in the Earth’s crust to enable the identification of structural features associated with geothermal resources. Although this process is well-established, standard computational implementations for processing gravity data that are FAIR (Findable, Accessible, Interoperable, and Reproduceable) are still lacking. This paper details ongoing efforts at the U.S. Geological Survey (USGS) to develop a standard set of open-source Python tools for gravity data reduction that align with the FAIR principles. This workflow makes use of existing open-source tools for geophysical data processing with the goal of maximizing opportunities for rapid improvements, interoperability, and adaptability to other types of geophysical data.

Conference Paper

Reassessing water availability in the Nile River Basin using satellite-based irrigation water use accounting

Existing estimates of irrigation areas and water use in the Nile River Basin vary widely and are based on inconsistent data and methodologies. This study leverages advances in remote sensing to provide an up-to-date and consistent basin-wide reassessment of water use in the Nile River Basin. Land cover and actual evapotranspiration data from 2013 to 2022 were used to quantify irrigated areas, irrigation water use, and the average naturalized water yield. Across the basin, 7.1 million hectares of irrigated land consume an average of 72.5 ± 2.6 billion cubic meters (BCM) of blue water annually. Egypt and Sudan together account for 92% of the irrigated area and 97% of the irrigation water use. The basin’s average naturalized yield, evaluated at Dongola station, is determined to be between 108 and 114.4 ± 3.2 BCM. Although conservative, this updated analysis indicates the basin’s average naturalized yield is 14%–20% higher than the previous naturalized yield estimate (95 BCM) and 29%–36% higher than the commonly cited observed flow of 84 BCM, which is frequently treated as the total basin-wide available water. Importantly, the study underscores that the 84 BCM represents flow at the Aswan gauging station after upstream consumptive uses, not the total water available in the basin under naturalized conditions. This distinction is critical for accurate water accounting, planning, and governance in this water-scarce basin. This study demonstrates the value of open-source remote sensing resources in data-scarce regions while emphasizing the need for region specific validation and bias correction for improved accuracy.

Nile River Basin

Evaluation of water quality in the Langford Valley–Irwin Groundwater Subbasin, Fort Irwin National Training Center, California, 1993–2019

The U.S. Army Fort Irwin National Training Center (NTC), 120 miles northeast of Los Angeles in the Mojave Desert of California, obtains its potable water supply from the Bicycle Valley and Langford Valley groundwater basins; Langford Valley groundwater basin is further subdivided into the Langford Well Lake and Irwin groundwater subbasins. The Irwin groundwater subbasin contains younger, unconsolidated deposits that have a saturated thickness of as much as 200 feet (ft) and a lower aquifer within older unconsolidated deposits as thick as 650 ft. Groundwater recharge under predevelopment conditions (before 1941) occurred primarily from infiltration of intermittent streamflow in small washes that cross the Irwin groundwater subbasin. Since that time, groundwater recharge has increased because of growth of the NTC in recent years and as a result of other processes, including (1) infiltration of treated wastewater into the aquifer through ponds near the NTC wastewater treatment facility (WWTF) and (2) infiltration of imported water and treated wastewater used for landscape irrigation at base housing and athletic fields. Water samples were collected from 17 wells and analyzed for field parameters, chemical constituents, and isotope composition in the Irwin groundwater subbasin between 2014 and 2019. These data were supplemented with water-chemistry data collected during 1993–95 and at other times if available. Between 1993–95 and 2015–19, median dissolved solids and nitrate concentrations in water from wells in the Irwin groundwater subbasin increased from 620 to 1,030 milligrams per liter (mg/L) and from 2.8 to 4.5 mg/L as nitrogen, respectively. After 2014, dissolved solids and nitrate concentrations in water from wells near the NTC WWTF decreased as a result of changes in source water quality attributable to reverse osmosis of treated drinking water delivered within the Irwin groundwater subbasin and to increased levels of treatment at the NTC WWTF. Based on delta oxygen-18 and delta deuterium isotope data, increases in dissolved solids concentrations in water from most wells were consistent with evaporation prior to recharge and mobilization of soluble salts from the unsaturated zone. Arsenic and fluoride concentrations in water from wells decreased between 1993–95 and 2015–19 as the basin filled with treated wastewater, but 2015–19 concentrations generally exceeded the California State Water Resources Control Board maximum contaminant levels of 10 micrograms per liter for arsenic and 2 mg/L for fluoride. Most groundwater in the Irwin groundwater subbasin has unadjusted carbon-14 ages ranging from 18,400 to 12,350 years before present. However, water from well 10E3, located along the wash near the subbasin outflow in the southeastern part of the Irwin groundwater subbasin, contained measurable tritium, which is consistent with infiltration of intermittent streamflow and groundwater recharge from the wash after 1952. Chemical and isotopic data indicate that treated wastewater is present in water from most wells in the upper aquifer that underlies the Irwin groundwater subbasin. Wells were not sampled to adequately determine the extent of treated wastewater and changes in water quality within the lower aquifer that underlies the Irwin groundwater subbasin.

California

Virginia and Landsat

From the shores of Jamestown and spreading north, south, and west, the lands that became the State of Virginia were some of the first in North America top experience rapid landscape change from European settlement. Imagery and data from the USGS Landsat series of satellites offer an unparalleled resource for the study, understanding, and preservation of Virginia’s land and water resources. From monitoring the health of water bodies to managing invasive species to planning for a range of climate change effects, the USGS National Land Imaging Program’s stewardship and public delivery of Landsat data have benefitted Virginians in myriad ways.

Virginia

A soil velocity model for improved ground motion simulations in the U. S. Pacific Northwest

Near-surface seismic velocity structure may significantly impact the intensity, duration, and frequency content of ground shaking during an earthquake. In this study, we compile 649 shear wave velocity (Vs) profiles throughout the U.S. Pacific Northwest and southern British Columbia (PNW) and use these measured profiles to develop a representative soil velocity model for four major Holocene soil provinces: Puget Lowlands, Willamette Valley, fill and alluvium, and `other' soils. The resulting soil velocity model shows good agreement to measured data for a wide range of site conditions, with variability between different geologic domains reflecting fundamental differences in depositional environments. We then show that using this regional soil velocity model in simulations of the 2001 M6.8 Nisqually, Washington earthquake improves the fit to observed high-frequency (≥ 0.5 Hz) ground motions in the Puget Sound region compared to simulations that do not incorporate shallow (≤ 200 m) seismic velocity structure. Overall, this work shows that incorporating localized soil velocity profiles into seismic velocity models is important for accurately estimating high-frequency ground motion and regional seismic hazard in earthquake simulations. Future earthquake simulations and hazard studies in the PNW could incorporate these soil velocity profiles to capture the region's distinct site response characteristics.

Washington

Peri-Gondwanan sediment in the Arkoma Basin derived from the north: The detrital zircon record of a uniquely concentrated non-Laurentian source signal in the late Paleozoic

During the assembly of Pangea, peri-Gondwanan terranes collided with the eastern and southern margins of Laurentia and brought with them unique detrital zircon U-Pb signatures. Discriminating between individual peri-Gondwanan terranes in the detrital record is difficult due to their similar geologic histories. However, characterization of this provenance is critical for understanding late Paleozoic sediment routing during development of Pangea. Along southeastern Laurentia, in the Arkoma Basin (present-day Arkansas and eastern Oklahoma, southeastern United States), we identified Middle Pennsylvanian (Desmoinesian) strata that exhibit a concentrated peri-Gondwanan detrital zircon signature (e.g., ca. 800–550 Ma). Although several southern peri-Gondwanan terranes (e.g., Maya, Suwannee) are closer to the Arkoma Basin, geologic data, such as predominantly north-to-south paleocurrents and proximal-to-distal facies relationships in these Desmoinesian strata, support a northern source (e.g., Ganderia, Avalonia, Meguma). Further evidence of a northern source comes from detrital zircon source mapping, which reveals the persistence of this peri-Gondwanan signal in depocenters to the north of the basin after the signal had diminished in the Arkoma Basin. To this end, bottom-up detrital zircon source modeling, source mapping, regional stratigraphy, paleocurrent data, and sandstone petrography allow us to reconstruct the evolution of this Middle Pennsylvanian (Desmoinesian) sediment pathway in the context of intraplate and plate-margin tectonic activity. This reconstruction documents processes affecting Earth’s surface (e.g., tectonics, climate) during the assembly of Pangea and describes in detail part of a dynamic continental-scale drainage system.

Geosphere

Overcoming the data limitations in landslide susceptibility modelling

Data-driven models widely used for assessing landslide susceptibility are severely limited by the landslide and environmental data needed to create them. They rely on inventories of past landslide locations, which are difficult to collect and often nonrepresentative. Furthermore, susceptibility maps are most needed in regions without the means to assemble an inventory. To overcome these challenges, we develop a method for assessing shallow landslide susceptibility based on a probabilistic morphometric analysis of the landscape’s topography, rather than the characteristics of landslides. The model assumes that hillslopes with higher relief and gradient compared to the surrounding landscape are more prone to landslides. We demonstrate the superior performance of this approach over contrasting data-driven models across the northwestern United States. As our morphometric model only requires elevation data, it overcomes the major limitations of data-driven models and facilitates the creation of effective susceptibility models in areas where it was previously unfeasible.

Oregon, Washington

Effects of stochastically-simulated near-fault ground motions on soil liquefaction

The scarcity of historically recorded near-fault ground motions poses a challenge to systematically understanding the influence of near-fault effects on various types of seismic demands for engineering purposes. In particular, the current state of knowledge of the influence of ground-shaking intensity on soil liquefaction and its consequences does not specifically account for the effects of near-fault ground motion characteristics. In this study, the influence of near-fault ground motions on liquefaction triggering and lateral spreading are investigated using non-linear modeling of a hypothetical liquefiable soil column in the finite-element computational platform OpenSees subjected to simulated ground motion time series that represent strong earthquake shaking in the near field. The simulated ground motion time series and resulting datasets are based on a parametric stochastic model and are developed for a range of source and path parameters to represent a realistic variability of ground motion characteristics. Dependencies between ground motion intensity measures (IMs) and liquefaction demand parameters are investigated for near-fault pulse and nonpulse-like ground motion sets. Evolutionary IMs, such as cumulative absolute velocity (CAV) and the time-varying magnitude-adjusted peak ground acceleration (PGAM), are considered in developing liquefaction triggering probability density functions. Post-liquefaction triggering responses such as lateral spreading displacements are examined in relation to PGA M and CAV. The ground motion simulations are validated by comparing their liquefaction-capacity PGA M fragilities and post-triggering CAV vulnerability relationships to historical records from the 1994 Northridge earthquake in California, USA. Finally, a path forward for future studies that includes finding systematic differences in the IM-liquefaction demand relationships between near-fault and far-field stochastic ground motion sets is outlined.

Conference Paper

Turbidite correlation for paleoseismology

Marine turbidite paleoseismology relies on the assumption of synchronous triggering of turbidity currents by earthquake shaking to infer rupture extent and recurrence. Such inference commonly depends on age dating and correlation of the physical stratigraphy of deposits carried by turbidity currents (i.e., turbidites) across great distances. Along the Cascadia subduction zone, which lies offshore the Pacific Northwest, USA, turbidite facies in core photographs, X-ray computed tomography images, and magnetic susceptibility (MS) data exhibit differences in character over relatively short distances, which implies that not all deposits can be correlated with confidence. Thus, subjective correlation based on expected similarity over great distances and weak age constraints does not independently support paleoseismic models. We present a new method for correlating turbidites along the Cascadia margin that can yield a more objective and repeatable stratigraphic framework to underpin earthquake recurrence. We use dynamic time warping to correlate MS logs and measure correlation coefficients of core pairs to evaluate correlation strength. We then compare these measures to a distribution of correlation coefficients of randomly generated turbidite sequences and find that only a small number of core pairs can be correlated more confidently than randomly stacked turbidites. This methodology promises a more robust correlation strategy for future stratigraphic studies.

Oregon, Washington

Relating glassy rind thicknesses to ambient air temperatures at the Lost Jim flow field in the Imuruk Lake volcanic field, Alaska

The Lost Jim flow field, in the Imuruk Lake volcanic field, Alaska, extends west ~34 km from a single vent, crossing subarctic tundra and currently touches several lakes and streams. The weighted mean of five 36Cl cosmogenic exposure ages from the Lost Jim pāhoehoe flow is 7.73 ± 0.37 ka, indicating this eruption occurred substantially after the eruption of the underlying Camille flow, which was emplaced at 39.7 ± 1.3 ka. Paleoclimate records indicate the period when the Lost Jim flow field was emplaced was after deglaciation, and the climate was similar to today. We propose that the emplacement of lava in these cold subarctic conditions can lead to faster cooling of the lava surface compared to lava emplaced in warmer locations such as mid- latitude cold deserts. Glass abundance in the outermost rinds at the Lost Jim flow field was on average 74 % with 6.4 mm thick rims, compared to 60 % with 2.9 mm rims for cold mid-latitude desert samples. We interpret increased glass content as a proxy for rapid cooling likely occurring partly during winter. Glassiness values varied less across vent, margin, and mid-flow locations when compared to the mid-latitude flows suggesting the Lost Jim flow field was broadly impacted by the subarctic climate as opposed to responding to local microclimates. Our results indicate that lava glassiness may be a useful environmental indicator of cooler (in this case subarctic) conditions.

Alaska

Persistent deep long-period seismicity near the Lassen Volcanic Center

Deep long-period (DLP) earthquakes have been observed at many volcanic settings around the world and linked to the magmatic processes that drive volcanic unrest. At the Lassen Volcanic Center (LVC) of the Cascade arc, limited detection of DLP activity hinders classification of anomalous seismic behavior and its relationship to the LVC magmatic system. This study uses a template matching approach with seismic data from temporary nodal and permanent stations to detect and locate DLP earthquakes near the LVC between 2017 and 2024. Within the DLP catalog of 611 events, a transition occurs from scattered (2017–2020) to oscillatory (2021–2024) occurrence rates. During the oscillatory period, regional earthquakes with large amplitude velocity waveforms observed near the LVC are associated with abrupt changes in DLP occurrence rates. Continued monitoring of DLP activity has the potential to better define the processes that drive volcanic unrest at the LVC in the future.

California

Update of the 2008 provisional Enhanced Geothermal Systems (EGS) assessment for the Great Basin, USA

In response to the Energy Act of 2020, the U.S. Geological Survey (USGS) is updating the Enhanced Geothermal Systems (EGS) resource assessment for the Great Basin, USA. The previous 2008 provisional assessment estimated how much electricity could be generated from EGS resources of the western United States using models of electric-grade heat, models of heat extraction over time, and estimates of how much rock might be stimulated to produce viable amounts of heat. Herein, a similar conceptual strategy is applied, using updated models of heat extraction as a function of fracture spacing and well distance. Previously used reservoir heat delivery models are updated to have a dependence on fracture and well spacing, potentially improving future estimates of EGS resources as ongoing research provides a better understanding about the success of reservoir stimulation as a function of geology and location. For a range of well distances (250-1000 m) and fracture spacings (1-50 m), heat extraction efficiency ranges from 25-62%, demonstrating the importance of accounting for the most likely results of proven viable fracturing technologies. Although fracturing is important, the biggest uncertainty by far in estimating the EGS resource for the Great Basin is estimating which geologic units at what depths can be stimulated sufficiently to produce geothermal energy economically and efficiently. Uncertainties in these factors yield estimates that range over two orders of magnitude with an upper limit of ~174 terawatts-thermal (TWth) produced for 30 years from the upper 7 km of the crust. This upper limit would require significant technological advances to access most of the electric-grade resource across the Great Basin. Assuming that 1% of this estimate will be accessible in the next few decades gives a resource estimate similar to that made in the 2008 provisional assessment. These estimated EGS heat extraction rates far exceed ( greater than 100x) the natural geothermal heat production rate, thus geothermal electricity production at these rates might not be sustainable unless heat is also recharged from other sources (e.g., excess solar energy when supply exceeds demand). In addition to assessment maps and cumulative estimates, the new models of fractured reservoirs developed herein can be used to estimate steady power production given a set of fractures and well spacing, and estimates can be made for setback distances to ensure no thermal interference with nearby powerplants.

Arizona, California, Idaho, Nevada, Oregon, Utah

Discrete element investigation of the influence of shallow soil density on the manifestations of strike-slip surface fault rupture

This study investigates the influence of soil relative density on strike-slip surface fault rupture manifestations using three-dimensional numerical simulations performed with the discrete element method (DEM). The simulations capture the formation of distinctive fault strands within complex flower structures using tens of millions of grains. The tendency for dense soils to localize shear manifests as multiple localized shear bands within wide zones of deformation in strike-slip fault rupture, whereas diffuse shear deformation develops within narrow zones in loose soils. The spatial extents of soil deformation are consistent between simulations having similar relative densities but with different quantities of grains. However, individual shears are more distinguishable in assemblages of finer grains than in assemblages of coarser grains. The simulations show the progressive development of new shears within the bounds of previously developed shears. Shear activity transitions inward as fault activity diminishes along the outermost shears and continues along newly developed shears until a vertically dipping throughgoing shear structure develops that accommodates most of the fault displacement thereon. The throughgoing fault develops at smaller fault displacements in looser soils because the first shear rupture propagates closer to the vertical direction and does not undergo as much inward translation of shear activity, as is observed in denser soils. In all simulations, ground surface uplift develops between nonintersecting active shears, and ground surface subsidence tends to develop where new shears intersect previous shears. The surface traces in these simulations are shown to be consistent with analog models and case histories of surface fault rupture occurring in different shallow subsurface materials. Although computationally costly, these modeling results are valuable for providing a strong numerical supplement to traditional analog models used to represent the mechanics of strike-slip zones in soil, and they provide quantifiable stresses and large-strain deformations throughout the model domain.

Journal of Geotechnical and Geoenvironmental Engin