USGS Science⌕ Search

SEARCH · USGS Science

Results for “Science Advances”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,045 records · Page 58Linked to original sources

EAARL coastal topography-western Florida, post-Hurricane Charley, 2004: seamless (bare earth and submerged.

Project Description These remotely sensed, geographically referenced elevation measurements of lidar-derived seamless (bare-earth and submerged) topography were produced as a collaborative effort between the U.S. Geological Survey (USGS), Coastal and Marine Geology Program (CMGP), St. Petersburg, FL, and the National Aeronautics and Space Administration (NASA), Wallops Flight Facility, VA. This project provides highly detailed and accurate datasets of a portion of the western Florida coastline beachface, acquired post-Hurricane Charley on August 17 and 18, 2004. The datasets are made available for use as a management tool to research scientists and natural-resource managers. An innovative airborne lidar instrument originally developed at the NASA Wallops Flight Facility, and known as the Experimental Advanced Airborne Research Lidar (EAARL), was used during data acquisition. The EAARL system is a raster-scanning, waveform-resolving, green-wavelength (532-nanometer) lidar designed to map near-shore bathymetry, topography, and vegetation structure simultaneously. The EAARL sensor suite includes the raster-scanning, water-penetrating full-waveform adaptive lidar, a down-looking red-green-blue (RGB) digital camera, a high-resolution multispectral color infrared (CIR) camera, two precision dual-frequency kinematic carrier-phase GPS receivers, and an integrated miniature digital inertial measurement unit, which provide for sub-meter georeferencing of each laser sample. The nominal EAARL platform is a twin-engine Cessna 310 aircraft, but the instrument may be deployed on a range of light aircraft. A single pilot, a lidar operator, and a data analyst constitute the crew for most survey operations. This sensor has the potential to make significant contributions in measuring sub-aerial and submarine coastal topography within cross-environmental surveys. Elevation measurements were collected over the survey area using the EAARL system, and the resulting data were then processed using the Airborne Lidar Processing System (ALPS), a custom-built processing system developed in a NASA-USGS collaboration. ALPS supports the exploration and processing of lidar data in an interactive or batch mode. Modules for presurvey flight-line definition, flight-path plotting, lidar raster and waveform investigation, and digital camera image playback have been developed. Processing algorithms have been developed to extract the range to the first and last significant return within each waveform. ALPS is used routinely to create maps that represent submerged or sub-aerial topography. Specialized filtering algorithms have been implemented to determine the 'bare earth' under vegetation. For more information about similar projects, please visit the Decision Support for Coastal Science and Management website. Selected References Brock, J.C., Wright, C.W., Sallenger, A.H., Krabill, W.B., and Swift, R.N., 2002, Basis and methods of NASA airborne topographic mapper Lidar surveys for coastal studies: Journal of Coastal Research, v. 18, no. 1, p. 1-13. Crane, Michael, Clayton, Tonya, Raabe, Ellen, Stoker, Jason, Handley, Larry, Bawden, Gerald, Morgan, Karen, and Queija, Vivian, 2004, Report of the U.S. Geological Survey Lidar workshop sponsored by the Land Remote Sensing Program and held in St. Petersburg, FL, November 2002: U.S. Geological Survey Open-File Report 2004-1456, 72 p. Nayegandhi, Amar, Brock, J.C., and Wright, C.W., 2009, Small-footprint, waveform-resolving Lidar estimation of submerged and sub-canopy topography in coastal environments: International Journal of Remote Sensing, v. 30, no. 4, p. 861-878. Sallenger, A.H., Wright, C.W., and Lillycrop, Jeff, 2005, Coastal impacts of the 2004 hurricanes measured with airborne Lidar; initial results: Shore and Beach, v. 73, nos. 2-3, p. 10-14. Resources Included Readme.txt File

Data Series↗

An integrative paradigm for building causal knowledge

A core aspiration of the ecological sciences is to determine how systems work, which implies the challenge of developing a causal understanding. Causal inference has long been approached from a statistical perspective, which can be limited and restrictive for a variety of reasons. Ecologists and other natural scientists have historically pursued mechanistic knowledge as an alternative approach to causal understanding, though without explicit reference to the requirements of causal statistics. In this paper, I describe the premises of an expanded paradigm for causal studies, the Integrative Causal Investigation Paradigm, that subsumes causal statistics and mechanistic investigation into a multi-evidence approach. This paradigm is distinct from the one articulated by causal statistics in that it (1) focuses its attention on the long-term goal of building causal knowledge across multiple studies and (2) recognizes the essential role of mechanistic investigations in establishing a causal understanding. The Integrative Paradigm, consequentially, proposes that there are multiple methodological routes to building causal knowledge and thus represents a pluralistic perspective. This paper begins by describing the crux of the problem faced by causal statistics. To understand this problem, it should be recognized that the word causal has multiple meanings and a variety of evidential standards. An expanded vocabulary is developed so as to reduce ambiguities and clarify critical issues. I further show by example that there is an important ingredient typically omitted from consideration in causal statistics, which is the known information related to the mechanisms underlying relationships being evaluated. To address this issue, I describe a procedure, Causal Knowledge Analysis, that involves an evaluation and compilation of existing evidence indicative of causal content and the features of mechanisms. Causal Knowledge Analysis is applied to three example situations to illustrate the process and its potential for contributing to the development of causal knowledge. The implications of adopting the proposed paradigm and associated procedures are discussed and include the potential for advancing ecology, the potential for clarifying causal methodology, and the potential for contributing to predictive forecasting.

Ecological Monographs↗

Forest impact estimated with NOAA AVHRR and landsat TM data related to an empirical hurricane wind-field distribution

An empirical model was used to relate forest type and hurricane-impact distribution with wind speed and duration to explain the variation of hurricane damage among forest types along the Atchafalaya River basin of coastal Louisiana. Forest-type distribution was derived from Landsat Thematic Mapper image data, hurricane-impact distribution from a suite of transformed advanced very high resolution radiometer images, and wind speed and duration from a wind-field model. The empirical model explained 73%, 84%, and 87% of the impact variances for open, hardwood, and cypress-tupelo forests, respectively. These results showed that the estimated impact for each forest type was highly related to the duration and speed of extreme winds associated with Hurricane Andrew in 1992. The wind-field model projected that the highest wind speeds were in the southern basin, dominated by cypress-tupelo and open forests, while lower wind speeds were in the northern basin, dominated by hardwood forests. This evidence could explain why, on average, the impact to cypress-tupelos was more severe than to hardwoods, even though cypress-tupelos are less susceptible to wind damage. Further, examination of the relative importance of wind speed in explaining the impact severity to each forest type showed that the impact to hardwood forests was mainly related to tropical-depression to tropical-storm force wind speeds. Impacts to cypress-tupelo and open forests (a mixture of willows and cypress-tupelo) were broadly related to tropical-storm force wind speeds and by wind speeds near and somewhat in excess of hurricane force. Decoupling the importance of duration from speed in explaining the impact severity to the forests could not be fully realized. Most evidence, however, hinted that impact severity was positively related to higher durations at critical wind speeds. Wind-speed intervals, which were important in explaining the impact severity on hardwoods, showed that higher durations, but not the highest wind speeds, were concentrated in the northern basin, dominated by hardwoods. The extreme impacts associated with the cypress-tupelo forests in the southeast corner of the basin intersected the highest durations as well as the highest wind speeds. ?? 2001 Published by Elsevier Science Inc.

Remote Sensing of Environment↗

Leveraging the double uniparental inheritance of freshwater mussels to detect male spawning activity through eDNA

Sampling aquatic habitats for environmental DNA (eDNA) has emerged as a valuable population monitoring tool, particularly for species that are difficult to survey with conventional methods. However, eDNA approaches are limited in their ability to provide demographic information, resulting in most applications focusing on documenting species presence and distributions. Advancing molecular detection methods to assess reproductive phenology could significantly improve conservation outcomes by informing management efforts. In this study, we leveraged the unique double uniparental mitochondrial inheritance system of one of the most imperiled taxonomic groups, freshwater mussels, to enable detection of reproductive activity. We developed separate qPCR assays for eDNA detection of male mitotypes, found almost exclusively in male gametic tissue, and female mitotypes, found in female gametes and somatic cells of both sexes, of the endangered spectaclecase, Cumberlandia monodonta (Say, 1829). Following assay development and laboratory validation, we verified their utility in situ by detecting male and female mitotypes from captive populations in a controlled mesocosm and from natural populations in streams at sites with known and previously unconfirmed occupancy. Male mitotype eDNA was detected almost exclusively during the March–May spawning window, with concentrations often an order of magnitude higher than female mitotype concentrations. Our findings suggest targeting male mitotype DNA and strategically timing eDNA sampling during spawning periods can improve detection probabilities and aid efforts to conserve at-risk freshwater mussels.

Missouri↗

Geomorphology, facies architecture, and high-resolution, non-marine sequence stratigraphy in avulsion deposits, Cumberland Marshes, Saskatchewan

This paper demonstrates field relationships between landforms, facies, and high-resolution sequences in avulsion deposits. It defines the building blocks of a prograding avulsion sequence from a high-resolution sequence stratigraphy perspective, proposes concepts in non-marine sequence stratigraphy and flood basin evolution, and defines the continental equivalent to a parasequence. The geomorphic features investigated include a distributary channel and its levee, the Stage I crevasse splay of Smith et al. (Sedimentology, vol. 36 (1989) 1), and the local backswamp. Levees and splays have been poorly studied in the past, and three-dimensional (3D) studies are rare. In this study, stratigraphy is defined from the finest scale upward and facies are mapped in 3D. Genetically related successions are identified by defining a hierarchy of bounding surfaces. The genesis, architecture, geometry, and connectivity of facies are explored in 3D. The approach used here reveals that avulsion deposits are comparable in process, landform, facies, bounding surfaces, and scale to interdistributary bayfill, i.e. delta lobe deposits. Even a simple Stage I splay is a complex landform, composed of several geomorphic components, several facies and many depositional events. As in bayfill, an alluvial ridge forms as the feeder crevasse and its levees advance basinward through their own distributary mouth bar deposits to form a Stage I splay. This produces a shoestring-shaped concentration of disconnected sandbodies that is flanked by wings of heterolithic strata, that join beneath the terminal mouth bar. The proposed results challenge current paradigms. Defining a crevasse splay as a discrete sandbody potentially ignores 70% of the landform's volume. An individual sandbody is likely only a small part of a crevasse splay complex. The thickest sandbody is a terminal, channel associated feature, not a sheet that thins in the direction of propagation. The three stage model of splay evolution proposed by Smith et al. (Sedimentology, vol. 36 (1989) 1) is revised to include facies and geometries consistent with a bayfill model. By analogy with delta lobes, the avulsion sequence is a parasequence, provided that its definition is modified to be independent from sea level. In non-marine settings, facies contacts at the tops of regional peats, coals, and paleosols are analogous to marine flooding surfaces. A parasequence is redefined here as a relatively conformable succession of genetically related strata or landforms that is bounded by regional flooding surfaces or their correlative surfaces. This broader definition incorporates the concept of landscape evolution between regional flooding surfaces in a variety of depositional settings. With respect to landscape evolution, accommodation space has three spatial dimensions - vertical (x), lateral (y), and down-the-basin (z). A flood basin fills in as landforms vertically (x) and laterally accrete (y), and prograde down-the-basin (z). Vertical aggradation is limited by the elevation of maximum flood stage (local base level). Differential tectonism and geomorphology control the slope of the flood basin floor and the direction of landscape evolution. These processes produce parasequences that include inclined stratal surfaces and oriented, stacked macroforms (clinoforms) that show the magnitude and direction of landscape evolution. ?? 2001 Elsevier Science B.V. All rights reserved.

Sedimentary Geology↗

HAZUS 99 estimated annualized earthquake losses for the United States

Recent earthquakes around the world show a pattern of steadily increasing damages and losses. The increases are due primarily to two factors: 1) significant growth in urban areas that are prone to earthquakes; and 2) the vulnerability of the older building stock, even buildings that were constructed within the past twenty years. In the United States, earthquake risk has grown substantially with development, while the earthquake hazard has remained relatively constant. To understand the hazard, we study earthquake characteristics and locales in which they occur. To understand risk, we must include characteristics of the built environment in the locales where earthquakes occur, and we must assess potential damages to the built environment and the people who use it. That is a complex undertaking and one this study intends to advance. It is important to estimate the varying degrees of seismic risk throughout the United States because we need that understanding in order to make informed decisions on mitigation policies, priorities, strategies and funding levels—in both the public and private sectors. We can reduce earthquake losses to older buildings by rehabilitating them, and we can reduce earthquake losses in new buildings by applying seismic codes to their design and construction. However, decisions to spend money on either of those solutions require evidence of risk. In the absence of a nationally accepted criterion and methodology for comparing seismic risk across regions, a consensus on optimal mitigation approaches has been difficult to reach. We are all aware of regions with high hazard and high risk, such as Los Angeles, but there is growing recognition that some regions with low seismic hazard actually have high seismic risk, as is the case in New York City and Boston. This risk results, in part, from concentrations of buildings and infrastructure built without use of seismic codes or provisions. Additionally, mitigation policies and practices in the public and private sectors may not have been adopted because a community’s earthquake risk was not clearly demonstrated, and neither was the value of mitigation measures in reducing that risk. The low hazard/high risk problem exists in a number of areas in the U.S., where the infrequency of damaging earthquakes has been interpreted, wrongly, as lack of risk. While earth scientists work to increase knowledge about the hazard throughout the United States, structural engineers and other professionals work to enumerate the many factors that comprise risk. This study is one result of that endeavor. It is based on loss estimates generated by Hazards U.S. (HAZUS), a Geographic Information System (GIS)- based earthquake loss estimation tool, developed by the Federal Emergency Management Agency (FEMA) in cooperation with the National Institute of Building Sciences (NIBS). The HAZUS tool provides an approach to quantifying future earthquake losses that is national in scope, uniform in application, and comprehensive in its coverage of the built environment.

Report↗

Aquatic ecosystem protection and restoration: Advances in methods for assessment and evaluation

Many methods and criteria are available to assess aquatic ecosystems, and this review focuses on a set that demonstrates advancements from community analyses to methods spanning large spatial and temporal scales. Basic methods have been extended by incorporating taxa sensitivity to different forms of stress, adding measures linked to system function, synthesizing multiple faunal groups, integrating biological and physical attributes, spanning large spatial scales, and enabling simulations through time. These tools can be customized to meet the needs of a particular assessment and ecosystem. Two case studies are presented to show how new methods were applied at the ecosystem scale for achieving practical management goals. One case used an assessment of biotic structure to demonstrate how enhanced river flows can improve habitat conditions and restore a diverse fish fauna reflective of a healthy riverine ecosystem. In the second case, multitaxonomic integrity indicators were successful in distinguishing lake ecosystems that were disturbed, healthy, and in the process of restoration. Most methods strive to address the concept of biological integrity and assessment effectiveness often can be impeded by the lack of more specific ecosystem management objectives. Scientific and policy explorations are needed to define new ways for designating a healthy system so as to allow specification of precise quality criteria that will promote further development of ecosystem analysis tools.

Environmental Science and Policy↗

Integrating distance sampling survey data with population indices to separate trends in abundance and temporary immigration

Managers rely on accurate estimators of wildlife abundance and trends for management decisions. Despite the focus of contemporary wildlife science on developing methods to improve inference from wildlife surveys, legacy datasets often rely on index counts that lack information about the detection process. Data integration can be a useful tool for combining index counts with data collected under more rigorous designs (i.e., designs that account for the detection process), but care is required when datasets represent different population processes or are mismatched in space and time. This can be particularly problematic in cases where animals aggregate in response to a spatially or temporally limited resource because individuals may temporarily immigrate from outside the study area and be included in the abundance index. Abundance indices based on brown bear ( Ursus arctos ) feeding aggregations within coastal meadows in early summer in Lake Clark National Park and Preserve, Alaska, USA, are one such example. These indices reflect the target population (brown bears residing within the park) and temporary immigrants (i.e., bears drawn from outside the park boundary). To properly account for the effects of temporary immigration, we integrated the index data with abundance data collected via park-wide distance sampling surveys, the latter of which properly addressed the detection process. By assuming that the distance data provide inference on abundance and the index counts represent some combination of abundance and temporary immigration processes, we were able to decompose the relative contribution of each to overall trend. We estimated that the density of brown bears within our study area was 38–54 adults/1,000 km 2 during 2003–2019 and that abundance increased at a rate of approximately 1.4%/year. The contribution of temporary immigrants to overall trend in the index was low, so we created 3 hypothetical scenarios to more fully demonstrate how the integrated approach could be useful in situations where the composite trend in meadow counts may obscure trends in abundance (e.g., opposing trends in abundance and temporary immigration). Our work represents a conceptual advance supporting the integration of legacy index data with more rigorous data streams and is broadly applicable in cases where trends in index values may represent a mixture of population processes.

Alaska↗

A GIS and statistical approach to identify variables that control water quality in hydrothermally altered and mineralized watersheds, Silverton, Colorado, USA

Hydrothermally altered bedrock in the Silverton mining area, southwest Colorado, USA, contains sulfide minerals that weather to produce acidic and metal-rich leachate that is toxic to aquatic life. This study utilized a geographic information system (GIS) and statistical approach to identify watershed-scale geologic variables in the Silverton area that influence water quality. GIS analysis of mineral maps produced using remote sensing datasets including Landsat Thematic Mapper, advanced spaceborne thermal emission and reflection radiometer, and a hybrid airborne visible infrared imaging spectrometer and field-based product enabled areas of alteration to be quantified. Correlations between water quality signatures determined at watershed outlets, and alteration types intersecting both total watershed areas and GIS-buffered areas along streams were tested using linear regression analysis. Despite remote sensing datasets having varying watershed area coverage due to vegetation cover and differing mineral mapping capabilities, each dataset was useful for delineating acid-generating bedrock. Areas of quartz–sericite–pyrite mapped by AVIRIS have the highest correlations with acidic surface water and elevated iron and aluminum concentrations. Alkalinity was only correlated with area of acid neutralizing, propylitically altered bedrock containing calcite and chlorite mapped by AVIRIS. Total watershed area of acid-generating bedrock is more significantly correlated with acidic and metal-rich surface water when compared with acid-generating bedrock intersected by GIS-buffered areas along streams. This methodology could be useful in assessing the possible effects that alteration type area has in either generating or neutralizing acidity in unmined watersheds and in areas where new mining is planned.

Colorado↗

Assessing time-integrated dissolved concentrations and predicting toxicity of metals during diel cycling in streams

Evaluating water quality and the health of aquatic organisms is challenging in systems with systematic diel (24 hour) or less predictable runoff-induced changes in water composition. To advance our understanding of how to evaluate environmental health in these dynamic systems, field studies of diel cycling were conducted in two streams (Silver Bow Creek and High Ore Creek) affected by historical mining activities in southwestern Montana. A combination of sampling and modeling tools were used to assess the toxicity of metals in these systems. Diffusive Gradients in Thin Films (DGT) samplers were deployed at multiple time intervals during diel sampling to confirm that DGT integrates time-varying concentrations of dissolved metals. Thermodynamic speciation calculations using site specific water compositions, including time-integrated dissolved metal concentrations determined from DGT, and a competitive, multiple-metal biotic ligand model incorporated into the Windemere Humic Aqueous Model Version 6.0 (WHAM VI) were used to determine the chemical speciation of dissolved metals and biotic ligands. The model results were combined with previously collected toxicity data on cutthroat trout to derive a relationship that predicts the relative survivability of these fish at a given site. This integrative approach may prove useful for assessing water quality and toxicity of metals to aquatic organisms in dynamic systems and evaluating whether potential changes in environmental health of aquatic systems are due to anthropogenic activities or natural variability.

Science of the Total Environment↗

Vive la résistance: genome-wide selection against introduced alleles in invasive hybrid zones

Evolutionary and ecological consequences of hybridization between native and invasive species are notoriously complicated because patterns of selection acting on non-native alleles can vary throughout the genome and across environments. Rapid advances in genomics now make it feasible to assess locus-specific and genome-wide patterns of natural selection acting on invasive introgression within and among natural populations occupying diverse environments. We quantified genome-wide patterns of admixture across multiple independent hybrid zones of native westslope cutthroat trout and invasive rainbow trout, the world's most widely introduced fish, by genotyping 339 individuals from 21 populations using 9380 species-diagnostic loci. A significantly greater proportion of the genome appeared to be under selection favouring native cutthroat trout (rather than rainbow trout), and this pattern was pervasive across the genome (detected on most chromosomes). Furthermore, selection against invasive alleles was consistent across populations and environments, even in those where rainbow trout were predicted to have a selective advantage (warm environments). These data corroborate field studies showing that hybrids between these species have lower fitness than the native taxa, and show that these fitness differences are due to selection favouring many native genes distributed widely throughout the genome.

Proceedings of the Royal Society B: Biological Sci↗

Quantifying long-term population growth rates of threatened bull trout: challenges, lessons learned, and opportunities

Temporal symmetry models (TSM) represent advances in the analytical application of mark–recapture data to population status assessments. For a population of char, we employed 10 years of active and passive mark–recapture data to quantify population growth rates using different data sources and analytical approaches. Estimates of adult population growth rate were 1.01 (95% confidence interval = 0.84–1.20) using a temporal symmetry model ( λ TSM ), 0.96 (0.68–1.34) based on logistic regressions of annual snorkel data ( λ A ), and 0.92 (0.77–1.11) from redd counts ( λ R ). Top-performing TSMs included an increasing time trend in recruitment ( f ) and changes in capture probability ( p ). There was only a 1% chance the population decreased ≥50%, and a 10% chance it decreased ≥30% ( λ MCMC ; based on Bayesian Markov chain Monte Carlo procedure). Size structure was stable; however, the adult population was dominated by small adults, and over the study period there was a decline in the contribution of large adults to total biomass. Juvenile condition decreased with increasing adult densities. Utilization of these different information sources provided a robust weight-of-evidence approach to identifying population status and potential mechanisms driving changes in population growth rates.

Oregon↗

Aligning climate models with stakeholder needs: Advances in communicating future rainfall uncertainties for south Florida decision makers

Changes in future precipitation are of great importance to climate data users in South Florida. A recent U.S. Geological Survey workshop, “Increasing Confidence in Precipitation Projections for Everglades Restoration,” highlighted a gap between standard climate model outputs and the climate information needs of some key Florida natural resource managers. These natural resource managers (hereafter broadly defined as “climate data users”) need more tailored output than is commonly provided by the climate modeling community. This study responds to these user needs by outlining and testing an adaptable methodology to select output from ensemble climate‐model simulations based on user‐defined precipitation drivers, using statistical methods common across scientific disciplines. This methodology is developed to provide a “decision matrix” that guides climate data users to specify the subset of models most important to their work based on each user's season (winter, summer, and annual) and the condition (dry, wet, neutral, and no threshold events) of interest. The decision matrix is intended to better communicate the subset of models best representing precipitation drivers. This information could increase users' confidence in climate models as a resource for natural resource planning and can be used to direct future dynamical downscaling efforts. This methodology is based in dynamical processes controlling precipitation via remote and local teleconnections. We also suggest that future climate studies in South Florida include high‐resolution climate model runs (i.e., ocean eddy resolving) in conjunction with dynamical downscaling to adequately capture precipitation variability.

South Florida↗

Depositional controls on detrital zircon provenance: An example from upper Cretaceous strata, southern Patagonia

Understanding how depositional environments within a sedimentary system redistribute and sequester sediment is critical for interpreting basin-scale provenance trends. However, sedimentary source-to-sink models commonly examine temporal changes and do not consider how variation in sedimentation processes across a dispersal pathway may result in contrasting provenance signatures. In this paper, we demonstrate a down-paleoslope shift in detrital zircon provenance signatures correlated with shallow-marine lithofacies patterns from the Upper Cretaceous La Anita Formation and underlying continental slope lithofacies of the Alta Vista Formation (Magallanes-Austral Basin, southern Patagonia). New stratigraphic, sedimentologic, and lithofacies analysis results from the La Anita Formation suggest an upward shoaling succession, from a (i) storm-influenced shoreface, (ii) fluvially-dominated, wave-influenced delta, and a (iii) high-energy, gravelly foreshore. Stratigraphic sections are paired with U-Pb detrital zircon sandstone samples (N = 20; n = 5219), which provide both maximum depositional ages and provenance characteristics. While all samples contain abundant zircon derived from the Andean volcanic arc (ca. 145–75 Ma), the amount from both Jurassic distal volcanic massifs (ca. 188–162 Ma) and recycled orogenic sources exhumed during the advance of the Cretaceous fold-and-thrust belt (>200 Ma; 157–142 Ma) vary with changes in depositional environment. We argue that down-paleoslope, systematic enriching of local fold-and-thrust belt material within the La Anita Formation is reflective of progressive mixing of grains transported via shallow-marine processes, while distally enriched fluvio-deltaic transported zircons were sourced from large, regional catchments. This suggests that competition between transport processes across a shallow and marginal marine sequence of rocks affects the resulting provenance signatures recorded within a single stratigraphic succession. These data also detail the degree of sediment pathway connectivity between shallow-marine sources and deep-marine sinks. Detrital zircon results from muddy continental slope facies of the Alta Vista Formation are made up entirely locally derived material, while zircon results from deep-water, sand-rich channel facies of the Formation are indistinguishable from coeval fluvio-deltaic zircon signatures. This implies that continental shelf-to-slope connectivity in a sediment dispersal system, via submarine canyons or shelf-edge delta progradation, is necessary for detrital zircon distributions from the shallow-marine realm to propagate into the deeper marine.

Patagonia↗

Initiation and development of the Laurentide and Cordilleran Ice Sheets following the last interglaciation

Fossil records from sites overridden by or adjacent to the Laurentide Ice Sheet indicate that the climate of the last interglaciation (Oxygen-Isotope Substage 5e, ca. 130-116 ka) was warmer than today. Following the last interglaciation, the Laurentide Ice Sheet first developed during Stage 5 over Keewatin, Quebec and Baffin Island. Along its northern margin, the ice sheet reached its maximum extent of the last glaciation during Stage 5. The ice sheet advanced across Baffin Island onto the continental shelf early during Stage 5 (5d?), whereas the advance into the western Canadian Arctic occurred late during Stage 5 (5b?). The ice sheet also may have advanced into the St Lawrence Lowland during Substage 5b, although this event may be younger (Stage 4). The Hudson Bay lowland became ice-free during Substage 5a. Retreat of the ice sheet on Baffin Island occurred during late Stage 5, probably Substage 5a. The exact timing of retreat from the western Canadian Arctic is unknown, but it occurred before 48 ka. The southern sector, including the St Lawrence Lowland, was ice-free during late Stage 5. The Hudson Bay lowland may have remained ice free through Stage 4 and much of Stage 3. Because of conflicting chronologies, however, it is more likely that this area was glaciated throughout Stage 3 and perhaps Stage 4. Nevertheless, the data demonstrate that the lowland was ice-free during part of the last glaciation. An independent ice cap developed over the Appalachian Uplands and advanced across Nova Scotia during Stage 4, perhaps as far as the edge of the continental shelf. The ice cap remained active over Nova Scotia as a setellite to the Laurentide Ice Sheet throughout the remainder of the last glaciation. The ice sheet advanced into the St Lawrence Lowland during Stage 4 and subsequently overwhelmed the local ice cap in the Appalachian Uplands, advancing perhaps into northern New England, but not farther south. The Lowland remained covered by the ice sheet until late Stage 2. The ice sheet may also have advanced into the Lake Ontario basin during Stage 4. The position of the northern margin of the Laurentide Ice Sheet during Stage 4 is not known, but it remained an unknown distance behind its maximum position reached during Stage 5. Cores from Baffin Bay indicate a substantial decrease in high-latitude glaciation during Stage 4. Following retreat, the Keewatin sector of the ice sheet may have remained over much of northwestern Canada as a quasi-stable ice mass until it readvanced during Stage 2. Similarly, the Baffin Island sector of the ice sheet may have remained largely intact. The southern margin of the ice sheet may have advanced into the Lake Ontario basin and upper Mississippi Valley during the middle of Stage 3 (ca. 50 ka), reaching its maximum extent of the last glaciation during Stage 2 (ca. 18–21 ka). Advance of the northern margin was younger (ca. 8–13 ka) than that of the southern margin; this advance was less extensive than the penultimate advance (Stage 5). Paleoenvironmental records indicate that the last interglaciation in areas covered by and near the Cordilleran Ice Sheet was as warm as, or warmer than, present. The Cordilleran Ice Sheet appears to have developed during Stage 5 or 4. At that time, it advanced over southern British Columbia and into the northern Puget Lowland. There is no record of this event in northern areas that were later covered by the ice sheet. The ice sheet disappeared before 59 ka, at the beginning of a lengthy nonglacial interval. Paleoenvironmental records indicate that climate was similar to the present during part of this interval. The ice sheet was absent, and glaciers probably were confined to mountain areas, throughout Stage 3. Climatic deterioration marking the end of this nonglacial interval may have begun as early as 29 ka. By 14–15 ka, the ice sheet had achieved its maximum extent of the last glaciation. Because there are few suitable dating methods capable of resolving events beyond the radiocarbon limit and because sites that preserve a record of events from the last glaciation are spatially restricted, we consider this synthesis as tentative and subject to significant revision as dating methods improve. Nevertheless, this perspective of the North American ice sheets through the last glaciation demonstrates their complex and dynamic behavior and attendant rapid fluctuations in ice volume.

Quaternary Science Reviews↗

The geography and geology of Alaska; a summary of existing knowledge, with a section on climate, and a topographic map and description thereof

Alaska, the largest outlying possession of the United States, is that great land mass forming the northwestern extremity of the North American continent, whose western point is within 60 miles of the Asiatic coast (PI. II). About one-quarter of this area lies within the Arctic Circle, and from the standpoint of geographic position must be regarded as an arctic province; but the southern seaboard, exposed to the warm winds and waters of the Pacific, gives to the entire southern portion of the territory" a comparatively warm climate. It is not generally realized that the range of climate in Alaska is greater than that between Florida and Maine. At the southernmost point of the Pacific coast the mean annual temperature is not far from that of the city of Washington, the winters being warmer and characterized by less snowfall; the Yukon Valley on the other hand has a winter climate similar to that of northern Montana and Dakota; while in the extreme northern part of the territory the meteorologic conditions are invariably arctic. Though as yet only sparsely settled, Alaska's vast area and great resources make it one of the most important possessions of the United States and promise its rapid development. During the years 1890 to 1900 the population increased from 32,052* to 63,592. The mineral output, which in 1890 was valued at less than $800,000, exceeded $9,000,000 in 1904, and the fisheries show a corresponding growth. This rapid development has attracted public attention and led to urgent demand for explorations, surveys, and other investigations. So actively has this work been pushed, both by public and private enterprise, that exact knowledge of the geography, geology, and mineral resources of the interior has made greater strides within the last eight years than during the preceding thirty-one years since the acquisition of Alaska. The facts regarding the geography and geology, scattered as they are through the many books and reports of this period, are not always readily accessible, and the time seems ripe to present them in a summarized form. The topography of Alaska is varied and complex (see PI. I), and it is not easy to present briefly even the salient features. The limited number of pages here devoted to the subject precludes the possibility of detailed treatment, even if the facts were available. Much of the description has been taken from the results attained by other investigators, the writer being personally familiar with only a part of this large province. A list of the publications consulted is appended. The larger geographic features of Alaska are now fairly well known, though the detailed surveys which are demanded by the development of many localities have hardly been begun. Preliminary surveys have been completed of all but three 8 of the larger rivers. The most important mountain ranges have been at least outlined (fig. 3). Only three large areas remain almost entirely unmapped: One in southwestern Alaska, between Cook Inlet and the lower Kuskokwim, and the others in northern Alaska, embracing the Arctic watershed east and west of the Colville River. Nearly all the surveys of the interior, however, have been of a preliminary and exploratory character, and to meet the requirements of exact geography must be followed by more detailed mensuration. Though the coast line has been fairly well known for more than half a century, knowledge of the interior has been gained chiefly within the last two decades. This has not yet found its way into text-books and has too often been entirely ignored by cartographers. If facts are presented which may seem elementary, it is because even well-informed people have been known to harbor misconceptions in regard to the orographic features, climate, and general character of Alaska. Those who read of the perils and privations of winter travel and explorations are apt to picture a region of ice and snow; others, again, who have personal knowledge of the tourist route of southeastern Alaska, regard the whole district as one of rugged mountains and glaciers. In point of fact, glaciers are now nearly limited to the ranges bordering the Pacific and to the two slopes of the Alaska range; and even during the greatest development of glaciers but a small portion of Alaska was under ice (see map, PI. XXII). As a treatise on geography would hardly be complete without some discussion of the climate, meteorologic data have been compiled by Mr. Cleveland Abbe, jr., but the discussion of this does not pretend to be more than a cursory treatment of the subject. The scope of the paper seems to require also a brief summary of the development of geographic knowledge of Alaska. This subject, with its many ramifications, is of fascinating interest and offers a magnificent field for the trained historian. If the accompanying sketch of discovery and exploration awakens any measure of popular interest the writer will feel amply rewarded for having attacked a theme which hardly falls within the scope of his investigations. When this compilation was begun it was intended to be chiefly a description of the topography of Alaska, as illustrated by the accompanying map (PI. XXXIV, in pocket), which was compiled under the direction of the late R. U. Goode. In the course of the work there accumulated much geologic as well as geographic material which seemed worthy of inclusion in the report. As no comprehensive statement of the geology of Alaska has been made since the modern epoch of investigation was begun, an attempt will be made to give a summary of all results achieved. Since the writer has obtained much of his knowledge of the facts from the work of others, he disclaims any pretense of making an entirely original contribution to geologic science. He feels, however, that a personal familiarity with a considerable part of the province, gained during seven consecutive seasons of field work, will justify Mm in presenting conclusions which may in some cases be at variance with those in the reports on which he must draw for his facts. Throughout this report attempt will be made to credit borrowed material to the source from which it is drawn. Where such matter has been obtained entirely from published reports there is no difficulty in so doing; but as regards investigators of the Geological Survey, with whom the writer has collaborated both in field and in office, the case is somewhat different, for it is not always possible to know whether this or that theory originated with the writer or with one of his colleagues. It will, then, perhaps suffice to state that this report could not have been prepared without the explorations and researches of the geologists, F. C. Schrader, Walter C. Mendenhall, Arthur J. Collier, J. E. Spurr, and Arthur C. Spencer; and the surveys of the topographers, T. G. Gerdine, D. C. Witherspoon, D. L. Reaburn, W. J. Peters, and E. C. Barnard. Each of these men, in the course of from two to six years of field work, has made important contributions to the knowledge of the geography and geology of Alaska, and not all of these results have yet been put in print. In the last season (1903) L. M. Prindle, C. W. Wright, Arthur Hollick, G. C. Martin, F. L. Hess, and Fred H. Moffit have carried on geologic work in Alaska, and the writer has made use of their work now in course of publication. He has also been fortunate in having access to the manuscript reports of Walter C. Mendenhall and F. C. Schrader on the Copper River basin, to which references will be made. The matter here presented should be credited in a measure to all of these investigators, but for many of the theories advanced the writer alone is responsible. As this manuscript goes to press there has been opportunity to incorporate some of the results of the field work of 1904. As far as possible these have been embodied in the text, but in some instances it has been found advisable to add them only as footnotes. During the past summer F. E. and C. W. Wright extended the geologic reconnaissance in southeastern Alaska. In southwestern Alaska G. C. Martin and T. W. Stanton have determined the general Mesozoic section, while F. H. Moffit has made a reconnaissance of the northern part of the Kenai Peninsula. A. J. Collier has mapped the geology of the Cape Lisburne region, and L. M. Prindle and F. L. Hess have made contributions to the knowledge of the metamorphic terranes of the Yukon-Tanana district. It is the writer's purpose to describe in nontechnical language the larger geographic features and discuss their relation as far as the data available will permit. In the treatment of the geology, however, less effort will be made to make the matter acceptable to the lay reader. It is hoped, however, that a brief summary of the salient features of the geologic history' may be not without interest to the general public. If this paper serves in some measure to dispel the popular fallacies regarding Alaska and to disseminate more accurate knowledge of its geographic and geologic features, the purpose of its publication will be accomplished.

Alaska↗

Stony coral tissue loss disease in Florida is associated with disruption of host–zooxanthellae physiology

Samples from eight species of corals ( Colpophyllia natans , Dendrogyra cylindrus , Diploria labyrinthiformis , Meandrina meandrites , Montastraea cavernosa , Orbicella faveolata, Pseudodiploria strigosa , and Siderastrea siderea ) that exhibited gross clinical signs of acute, subacute, or chronic tissue loss attributed to stony coral tissue loss disease (SCTLD) were collected from the Florida Reef Tract during 2016–2018 and examined histopathologically. The hallmark microscopic lesion seen in all eight species was focal to multifocal lytic necrosis (LN) originating in the gastrodermis of the basal body wall (BBW) and extending to the calicodermis, with more advanced lesions involving the surface body wall. This was accompanied by other degenerative changes in host cells such as mucocyte hypertrophy, degradation and fragmentation of gastrodermal architecture, and disintegration of the mesoglea. Zooxanthellae manifested various changes including necrosis (cytoplasmic hypereosinophilia, pyknosis); peripheral nuclear chromatin condensation; cytoplasmic vacuolation accompanied by deformation, swelling, or atrophy; swollen accumulation bodies; prominent pyrenoids; and degraded chloroplasts. Polyhedral intracytoplasmic eosinophilic periodic acid–Schiff-positive crystalline inclusion bodies (∼1–10 μm in length) were seen only in M. cavernosa and P. strigosa BBW gastrodermis in or adjacent to active lesions and some unaffected areas (without surface lesions) of diseased colonies. Coccoidlike or coccobacilloidlike structures (Gram-neutral) reminiscent of microorganisms were occasionally associated with LN lesions or seen in apparently healthy tissue of diseased colonies along with various parasites and other bacteria all considered likely secondary colonizers. Of the 82 samples showing gross lesions of SCTLD, 71 (87%) were confirmed histologically to have LN. Collectively, pathology indicates that SCTLD is the result of a disruption of host–symbiont physiology with lesions originating in the BBW leading to detachment and sloughing of tissues from the skeleton. Future investigations could focus on identifying the cause and pathogenesis of this process.

Florida↗

An integrated sensor network and data driven approach to satellite remote sensing of dissolved organic matter

Traditional remote sensing retrieval models for water quality have historically relied on limited, localized data sets due to the prohibitive costs of extensive field campaigns and logistical challenges of collecting match-up data with satellite overpasses. As a result, these models often lack generalizability across seasons, tides, and sites. Furthermore, small field data sets limit the utility of modern machine learning techniques to advance remote sensing retrieval models. In situ optical sensors deployed in a sensor network to continuously monitor larger water bodies can drastically increase the number of measurements, providing the opportunity to develop new approaches for building robust remote sensing retrieval models by leveraging both remote sensing data and in situ networks as an integrated monitoring system. This study leverages a large “ground-to-space” sensor network that combines an in situ optical sensor network with satellite-based remote sensing to overcome these limitations. Utilizing a large-scale data set from the U.S. Geological Survey's Sacramento—San Joaquin River Delta monitoring network, of dissolved organic matter fluorescence measurements, and remote sensing data from the European Space Agency's Sentinel-2A and -2B satellites, this study implemented a data driven approach for dissolved organic matter models. The data set, consisting of 982 samples collected between 2018 and 2021 was used to train and validate a random forest model ( R 2 = 0.76, RMSE = 6.1 Quinine Sulfate Equivalents), with demonstrated applicability across diverse site conditions, tidal stages, and seasons. This work provides a scalable solution to address critical challenges in water quality monitoring and offers a replicable framework for global water quality management.

Calfornia↗