SEARCH · USGS Science

Results for “Population Ecology”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,045 records · Page 58Linked to original sources

USGS2025

Grass carp (Ctenopharyngodon idella) movement states and backwater use can inform removal efforts

Expansion of grass carp ( Ctenopharyngodon idella ) within the Laurentian Great Lakes poses significant ecological and economic risks. Suppression efforts to remove grass carp have increased to curtail population growth, but capture efficiency remains low. One management challenge is the lack of understanding how this invasive species is using its novel habitats in the Great Lakes. This study aimed to identify spatiotemporal patterns in grass carp behavior and backwater use that could be exploited by management efforts, including removal. We used acoustic telemetry to examine when grass carp occurred in areas vulnerable to removal by boat electrofishing in the Sandusky River, Ohio, USA. Hidden Markov models were used to categorize behavioral states and evaluate their relationships with environmental factors. Best performing 2-state and 3-state hidden Markov models included proximity to backwater as a factor in state-dependent step length and transition probability between states, with a higher probability of being in less mobile states during the middle of the day and in backwaters. For the 2-state model, this less mobile state was also more common during warmer temperatures. Distinct diel patterns and backwater use identified in this study provide critical insights for improving management. Model results suggest that current removal efforts, focused primarily on the mainstem of the river, may benefit from adjustments in both timing and removal gear. The findings raise further questions about unobserved behaviors contributing to state assignment and sufficiently flexible adaptive management strategies to account for individual variation in grass carp behavior.

Ohio↗

USGS2026

Individual encounter data of six African carnivore species optimized for multi-species density estimation

The ability to estimate abundances of multiple wildlife species within an area is valuable for both conservation and ecological inquiry. Spatially explicit capture–recapture (SCR) methods are commonly used to obtain reliable population size estimates, particularly for low-density and individually identifiable carnivore species. However, estimating abundance within multi-species communities poses a methodological challenge as survey designs and analytical tools are primarily tailored for single target species. Here, we present a dataset of spatially referenced individual encounter histories of six carnivore species with varying space requirements (lion, Panthera leo ; leopard, Panthera pardus ; spotted hyena, Crocuta crocuta ; cheetah, Acinonyx jubatus ; serval, Leptailurus serval ; large-spotted genet, Genetta tigrina ). These data were collected in a South African game reserve using a camera trap array optimized for multi-species density estimation using SCR methods. This dataset will be a valuable resource for studying spatial processes among potentially interacting carnivores without the common pitfalls that come with by-catch data of non-target species, and will provide a much-needed case study for the further development of multi-species statistical method development.

Munywana Conservancy↗

USGS2015

Sampling techniques for burbot in a western non-wadeable river

Burbot, Lota lota (L.), populations are declining throughout much of their native distribution. Although numerous aspects of burbot ecology are well understood, less is known about effective sampling techniques for burbot in lotic systems. Occupancy models were used to estimate the probability of detection ( ) for three gears (6.4- and 19-mm bar mesh hoop nets, night electric fishing), within the context of various habitat characteristics. During the summer, night electric fishing had the highest estimated detection probability for both juvenile ( , 95% C.I.; 0.35, 0.26–0.46) and adult (0.30, 0.20–0.41) burbot. However, small-mesh hoop nets (6.4-mm bar mesh) had similar detection probabilities to night electric fishing for both juvenile (0.26, 0.17–0.36) and adult (0.27, 0.18–0.39) burbot during the summer. In autumn, a similar overlap between detection probabilities was observed for juvenile and adult burbot. Small-mesh hoop nets had the highest estimated probability of detection for both juvenile and adult burbot (0.46, 0.33–0.59), whereas night electric fishing had a detection probability of 0.39 (0.28–0.52) for juvenile and adult burbot. By using detection probabilities to compare gears, the most effective sampling technique can be identified, leading to increased species detections and more effective management of burbot.

Fisheries Management and Ecology↗

USGS2014

Habitat coupling in a large lake system: delivery of an energy subsidy by an offshore planktivore to the nearshore zone of Lake Superior

1. We hypothesised that the autumn spawning migration of Lake Superior cisco ( Coregonus artedi ) provides a resource subsidy, in the form of energy-rich cisco eggs, from the offshore pelagic to the nearshore benthic community over winter, when alternate prey production is likely to be low. 2. We tested this hypothesis using fish and macroinvertebrate surveys, fish population demographics, diet and stable isotope analyses, and bioenergetics modelling. 3. The benthic, congeneric lake whitefish ( C. clupeaformis ) was a clear beneficiary of cisco spawning. Cisco eggs represented 16% of lake whitefish annual consumption in terms of biomass, but 34% of energy (because of their high energy density: >10 kJ g wet mass −1 ). Stable isotope analyses were consistent with these results and suggest that other nearshore fish species may also rely on cisco eggs. 4. The lipid content of lake whitefish liver almost doubled from 26 to 49% between November and March, while that of muscle increased from 14 to 26% over the same period, suggesting lake whitefish were building, rather than depleting, lipid reserves during winter. 5. In the other Laurentian Great Lakes, where cisco populations remain very low and rehabilitation efforts are underway, the offshore-to-nearshore ecological link apparent in Lake Superior has been replaced by non-native planktivorous species. These non-native species spawn in spring have smaller eggs and shorter incubation periods. The rehabilitation of cisco in these systems should reinstate the onshore subsidy as it has in Lake Superior.

Wisconsin↗

USGS2017

Host susceptibility to snake fungal disease is highly dispersed across phylogenetic and functional trait space

Emerging infectious diseases (EIDs) reduce host population sizes, cause extinction, disassemble communities, and have indirect negative effects on human well-being. Fungal EIDs have reduced population abundances in amphibians and bats across many species over large areas. The recent emergence of snake fungal disease (SFD) may have caused declines in some snake populations in the Eastern United States (EUS), which is home to a phylogenetically and ecologically diverse assembly of 98 taxa. SFD has been documented in only 23 naturally occuring species, although this is likely an underestimate of the number of susceptible taxa. Using several novel methods, including artificial neural networks, we combine phylogenetic and trait-based community estimates from all taxa in this region to show that SFD hosts are both phylogenetically and ecologically randomly dispersed. This might indicate that other species of snakes in the EUS could be currently infected or susceptible to SFD. Our models also indicate that information about key traits that enhance susceptiblity is lacking. Surveillance should consider that all snake species and habitats likely harbor this pathogen.

Science Advances↗

USGS2010

Variation in δ 13 C and δ 15 N diet–vibrissae trophic discrimination factors in a wild population of California sea otters

The ability to quantify dietary inputs using stable isotope data depends on accurate estimates of isotopic differences between a consumer (c) and its diet (d), commonly referred to as trophic discrimination factors (TDFs) and denoted by Δ c-d . At present, TDFs are available for only a few mammals and are usually derived in captive settings. The magnitude of TDFs and the degree to which they vary in wild populations is unknown. We determined δ 13 C and δ 15 N TDFs for vibrissae (i.e., whiskers), a tissue that is rapidly becoming an informative isotopic substrate for ecologists, of a wild population of sea otters for which individual diet has been quantified through extensive observational study. This is one of the very few studies that report TDFs for free-living wild animals feeding on natural diets. Trophic discrimination factors of 2.2 ± 0.7 for δ 13 C and 3.5 ± 0.6 for δ 15 N (mean ± SD) were similar to those reported for captive carnivores, and variation in individual δ 13 C TDFs was negatively but significantly related to sea urchin consumption. This pattern may relate to the lipid-rich diet consumed by most sea otters in this population and suggests that it may not be appropriate to lipid-extract prey samples when using the isotopic composition of keratinaceous tissues to examine diet in consumers that frequently consume lipid-rich foods, such as many marine mammals and seabirds. We suggest that inherent variation in TDFs should be included in isotopically based estimates of trophic level, food chain length, and mixing models used to quantify dietary inputs in wild populations; this practice will further define the capabilities and limitations of isotopic approaches in ecological studies.

Ecological Applications↗

USGS2017

Deepwater Program: Lophelia II, continuing ecological research on deep-sea corals and deep-reef habitats in the Gulf of Mexico

The deep sea is a rich environment composed of diverse habitat types. While deep-sea coral habitats have been discovered within each ocean basin, knowledge about the ecology of these habitats and associated inhabitants continues to grow. This report presents information and results from the Lophelia II project that examined deep-sea coral habitats in the Gulf of Mexico. The Lophelia II project focused on Lophelia pertusa habitats along the continental slope, at depths ranging from 300 to 1,000 meters. The chapters are authored by several scientists from the U.S. Geological Survey, National Oceanic and Atmospheric Administration, University of North Carolina Wilmington, and Florida State University who examined the community ecology (from microbes to fishes), deep-sea coral age, growth, and reproduction, and population connectivity of deep-sea corals and inhabitants. Data from these studies are presented in the chapters and appendixes of the report as well as in journal publications. This study was conducted by the Ecosystems Mission Area of the U.S. Geological Survey to meet information needs identified by the Bureau of Ocean Energy Management.

Gulf of Mexico↗

USGS2026

Exploratory ecology of reintroduced elk in Virginia

Reintroductions of extirpated species are an important tool in wildlife conservation. Understanding how reintroduced populations acclimatize to novel environments can lend insight into social learning that in turn is valuable for assessing reintroduction success and maximizing efficacy of subsequent efforts. During 2012, 2013, and 2014, the Virginia Department of Wildlife Resources implemented soft releases of elk ( Cervus canadensis ) translocated to southwestern Virginia from eastern Kentucky. We investigated home range establishment and post-release movements of these reintroduced elk ( n = 60). We found adults moved farther from the release site than either yearlings or calves (F = 6.93, p = 0.001). Elk released in 2012 and 2013 took similar amounts of time to establish home ranges (median 181 days, range 108–214 days; and median 189 days, range 147–209 days, respectively), but individuals released in 2013 remained closer to the release site ( 𝑥 ̲ = 605.5 m, SD = 335.7 m, closer) presumably by joining established social groups. However, the 2014 cohort generally took longer to establish home ranges (median: 231 days; range: 56–258 days) and moved farthest from the release site ( 𝑥 ̲ = 1360.2 m, SD = 293.9 m, farther than 2012 individuals) possibly due to the larger cohort size and resulting intraspecific competition, or the earlier release date that year. Our findings suggest the number of consecutively released cohorts, the timing of the release, and the composition of age classes for released individuals are important considerations for reintroductions.

Virginia↗

USGS2018

Designing a protected area to safeguard imperiled species from urbanization

Reserve design is a process that can address ecological, social, and political factors to identify parcels of land needed to sustain wildlife populations and other natural resources. Acquisition of parcels for a large terrestrial reserve is difficult because it typically occurs over a long timeframe and thus invokes consideration of future conditions such as climate and urbanization changes. In central Florida, a new protected area, the Everglades Headwaters National Wildlife Refuge, has been authorized by the United States Government. The new refuge will host important threatened and endangered species and habitats, as well as be located to allow for species adaptation from climate change impacts. For this study we combined habitat objectives defined by the U.S. Fish and Wildlife Service and projections from two urbanization models to provide guidance for Everglades Headwaters National Wildlife Refuge design. We used Marxan with Zones to find near-optimal solutions for protecting explicit amounts of five target habitats. We identified parcels for inclusion into the reserve design that the model allocated among two zones representing different methods of protection: fee-simple purchase (up to 20,234 hectares authorized by the United States government), and conservation easement agreements (up to 40,469 hectares authorized). As expected, for all scenarios we found an increase in costs as the proportion of fee-simple purchases was increased, reflecting the lesser cost of easements, but the number of parcels required for protection differed little among scenarios. The two urbanization models showed considerable agreement over which habitat patches were not forecast to be developed, and showed some agreement over which parcels might be developed. The U.S. Fish and Wildlife Service may benefit from focusing on parcels that are selected frequently by our analyses under both urban scenarios because these parcels are more likely to be in areas where urbanization threats and demand for land is reduced. The reserve designs we generated met U.S. Fish and Wildlife Service habitat goals within fee and easement zone restrictions, and we found reserve configurations that fell well below the mandated size limit.

Florida↗

USGS1996

Toxicity of fire retardant chemicals and fire suppressant foams to vertebrate and invertebrate wildlife species

Under laboratory conditions, acute single-dose oral toxicity tests (LD50) were conducted with three fire retardant chemicals (Fire-Trol GTS-R, Phos-Chek D75-F, and Fire-Trol LCG-R) and two fire suppressant foams (Silv-Ex and Phos-Chek WD-881) to determine effects on adult northern bobwhite, American kestrel, red-winged blackbird, and white-footed mouse. In addition, earthworms were exposed (LC50) for 14 days in treated soil. In general, no toxic responses were evident. For northern bobwhite, the LD50 for all five chemicals was >2000 mg a.l./kg of body mass. American kestrels regurgitated all chemicals except Silv-ex; LD50s all exceeded 2000 mg/kg. The LD50 for red-winged blackbird was also >2000 mg/kg for all chemicals except Fire-Trol GTS-R which is currently undergoing further testing. In addition, the LD50 for white-footed mouse was >2000 mg/kg for Phos-Chek D75F. The 14-day LC50 for earthworms was >1000 ppm for all chemicals. Therefore, we concluded that these retardants and foams do not pose an acute hazard to adult birds, mammals, or earthworms. However, ecological studies to evaluate the potential effects of these formulations on vertebrate behavior and population dynamics are in progress.

Book chapter↗

USGS1988

Effects of aircraft noise and sonic booms on domestic animals and wildlife: bibliographic abstracts

The purpose of this document is to provide an information base on the effects of aircraft noise and sonic booms on various animal species. Such information is necessary to assess potential impacts to wildlife populations from proposed military and other flight operations. To develop this document the National Ecology Center conducted a literature search of information pertaining to animals and wildlife. Information concerning other types of noise was also gathered to supplement the lack of knowledge on the effects of aircraft noise. The bibliographic abstracts in this report provide a compilation of current knowledge. No attempt was made to evaluate the appropriateness or adequacy of the scientific approach of each study.

Report↗

USGS2014

Spring migration of waterfowl in the Northern Hemisphere: a management and conservation perspective

Spring migration is a key part of the annual cycle for waterfowl populations in the northern hemisphere, due to its temporal proximity to the breeding season and because resources may be limited at one or more staging sites. Research based on field observations during spring lags behind other periods of the year, despite the potential for fitness consequences through diminished survival or cross-seasonal effects of conditions experienced during migration. Consequently, conservation strategies for waterfowl on spring migration are often only refined versions of practices used during autumn and winter. Here we discuss the current state of knowledge of habitat requirements for waterfowl at their spring migratory sites and the intrinsic and extrinsic factors that lead to variability in those requirements. The provision of plant foods has become the main conservation strategy during spring because of the birds’ energy requirements at this time, not only to fuel migration but to facilitate early clutch formation on arrival at the breeding grounds. Although energy sources are important to migrants, there is little evidence on the extent to which the availability of carbohydrate-based food is limiting for many migratory waterfowl populations. Such limitation is relatively unlikely among populations that exploit agricultural grain during migration (e.g. arctic-nesting geese), suggesting that conservation strategies for these populations may be misplaced. In general, however, we found few cases in which an ecological understanding of spring-migrating waterfowl was sufficient to indicate true resource limitation during migration, and still fewer cases where conservation efforts ameliorated these limitations. We propose a framework that aims to address knowledge gaps and apply empirical research results to conservation strategies based on documented limitations and associated fitness impacts on migrating waterfowl. Such a strategy would improve allocation of scarce conservation resources during spring migration and greatly improve ecological understanding of migratory waterfowl and their habitats in the northern hemisphere.

Wildfowl↗

USGS2014

Estimating habitat carrying capacity for migrating and wintering waterfowl: Considerations, pitfalls and improvements

Population-based habitat conservation planning for migrating and wintering waterfowl in North America is carried out by habitat Joint Venture (JV) initiatives and is based on the premise that food can limit demography (i.e. food limitation hypothesis). Consequently, planners use bioenergetic models to estimate food (energy) availability and population-level energy demands at appropriate spatial and temporal scales, and translate these values into regional habitat objectives. While simple in principle, there are both empirical and theoretical challenges associated with calculating energy supply and demand including: 1) estimating food availability, 2) estimating the energy content of specific foods, 3) extrapolating site-specific estimates of food availability to landscapes for focal species, 4) applicability of estimates from a single species to other species, 5) estimating resting metabolic rate, 6) estimating cost of daily behaviours, and 7) estimating costs of thermoregulation or tissue synthesis. Most models being used are daily ration models (DRMs) whose set of simplifying assumptions are well established and whose use is widely accepted and feasible given the empirical data available to populate such models. However, DRMs do not link habitat objectives to metrics of ultimate ecological importance such as individual body condition or survival, and largely only consider food-producing habitats. Agent-based models (ABMs) provide a possible alternative for creating more biologically realistic models under some conditions; however, ABMs require different types of empirical inputs, many of which have yet to be estimated for key North American waterfowl. Decisions about how JVs can best proceed with habitat conservation would benefit from the use of sensitivity analyses that could identify the empirical and theoretical uncertainties that have the greatest influence on efforts to estimate habitat carrying capacity. Development of ABMs at restricted, yet biologically relevant spatial scales, followed by comparisons of their outputs to those generated from more simplistic, deterministic models can provide a means of assessing degrees of dissimilarity in how alternative models describe desired landscape conditions for migrating and wintering waterfowl.

Wildfowl↗

USGS2012

The early bird gets the shrimp: Confronting assumptions of isotopic equilibrium and homogeneity in a wild bird population

1. Because stable isotope distributions in organic material vary systematically across energy gradients that exist in ecosystems, community and population structures, and in individual physiological systems, isotope values in animal tissues have helped address a broad range of questions in animal ecology. It follows that every tissue sample provides an isotopic profile that can be used to study dietary or movement histories of individual animals. Interpretations of these profiles depend on the assumption that metabolic pools are isotopically well mixed and in equilibrium with dietary resources prior to tissue synthesis, and they extend to the population level by assuming isotope profiles are identically distributed for animals using the same proximal dietary resource. As these assumptions are never fully met, studying structure in the variance of tissue isotope values from wild populations is informative. 2. We studied variation in δ 13 C, δ 15 N, δ 2 H and δ 18 O data for feathers from a population of eared grebes (Podiceps nigricollis) that migrate to Great Salt Lake each fall to moult feathers. During this time, they cannot fly and feed almost exclusively on superabundant brine shrimp (Artemia franciscana). The ecological simplicity of this situation minimized the usual spatial and trophic complexities often present in natural studies of feather isotope values. 3. Ranges and variances of isotope values for the feathers were larger than those from previously published studies that report feather isotopic variance, but they were bimodally distributed in all isotope dimensions. Isotope values for proximal dietary resources and local surface water show that some of the feathers we assumed to have been grown locally must have been grown before birds reached isotopic equilibrium with local diet or immediately prior to arrival at Great Salt Lake. 4. Our study provides novel insights about resource use strategies in eared grebes during migration. More generally, it demonstrates the utility of studying variance structures and questioning assumptions implicit in the interpretation of stable isotope data from wild animals.

Utah↗

USGS2020

Benthic habitat is an integral part of freshwater Mysis ecology

Diel vertical migration (DVM) is common in aquatic organisms. The trade‐off between reduced predation risk in deeper, darker waters during the day and increased foraging opportunities closer to the surface at night is a leading hypothesis for DVM behaviour. Diel vertical migration behaviour has dominated research and assessment frameworks for Mysis , an omnivorous mid‐trophic level macroinvertebrate that exhibits strong DVM between benthic and pelagic habitats and plays key roles in many deep lake ecosystems. However, some historical literature and more recent evidence indicate that mysids also remain on the bottom at night, counter to expectations of DVM. We surveyed the freshwater Mysis literature using Web of Science (WoS; 1945–2019) to quantify the frequency of studies on demographics, diets, and feeding experiments that considered, assessed, or included Mysis that did not migrate vertically but remained in benthic habitats. We supplemented our WoS survey with literature searches for relevant papers published prior to 1945, journal articles and theses not listed in WoS, and additional references known to the authors but missing from WoS (e.g. only 47% of the papers used to evaluate in situ diets were identified by WoS). Results from the survey suggest that relatively little attention has been paid to the benthic components of Mysis ecology. Moreover, the literature suggests that reliance on Mysis sampling protocols using pelagic gear at night provides an incomplete picture of Mysis populations and their role in ecosystem structure and function. We summarise current knowledge of Mysis DVM and provide an expanded framework that more fully considers the role of benthic habitat. Acknowledging benthic habitat as an integral part of Mysis ecology will enable research to better understand the role of Mysis in food web processes.

Freshwater Biology↗

USGS2019

Land-use change and the ecological consequences of personality in small mammals

Many plants rely on animals for seed dispersal, but are all individuals equally effective at dispersing seeds? If not, then the loss of certain individual dispersers from populations could have cascade effects on ecosystems. Despite the importance of seed dispersal for forest ecosystems, variation among individual dispersers and whether land‐use change interferes with this process remains untested. Through a large‐scale field experiment conducted on small mammal seed dispersers, we show that an individual's personality affects its choice of seeds, as well as how distant and where seeds are cached. We also show that anthropogenic habitat modifications shift the distribution of personalities within a population, by increasing the proportion of bold, active, and anxious individuals and in‐turn affecting the potential survival and dispersal of seeds. We demonstrate that preserving diverse personality types within a population is critical for maintaining the key ecosystem function of seed dispersal.

Ecology Letters↗

USGS2010

Persistence of highly pathogenic avian influenza H5N1 virus defined by agro-ecological niche

The highly pathogenic avian influenza (HPAI) H5N1 virus has spread across Eurasia and into Africa. Its persistence in a number of countries continues to disrupt poultry production, impairs smallholder livelihoods, and raises the risk a genotype adapted to human-to-human transmission may emerge. While previous studies identified domestic duck reservoirs as a primary risk factor associated with HPAI H5N1 persistence in poultry in Southeast Asia, little is known of such factors in countries with different agro-ecological conditions, and no study has investigated the impact of such conditions on HPAI H5N1 epidemiology at the global scale. This study explores the patterns of HPAI H5N1 persistence worldwide, and for China, Indonesia, and India includes individual provinces that have reported HPAI H5N1 presence during the 2004–2008 period. Multivariate analysis of a set of 14 agricultural, environmental, climatic, and socio-economic factors demonstrates in quantitative terms that a combination of six variables discriminates the areas with human cases and persistence: agricultural population density, duck density, duck by chicken density, chicken density, the product of agricultural population density and chicken output/input ratio, and purchasing power per capita. The analysis identifies five agro-ecological clusters, or niches, representing varying degrees of disease persistence. The agro-ecological distances of all study areas to the medoid of the niche with the greatest number of human cases are used to map HPAI H5N1 risk globally. The results indicate that few countries remain where HPAI H5N1 would likely persist should it be introduced.

EcoHealth↗

USGS2025

Healing ogaa (walleye Sander vitreus) waters: Lessons and future directions for inland fisheries rehabilitation

ulturally, economically, and nutritionally valuable inland fisheries face many new challenges on top of chronic disturbances. In the upper midwestern United States, declines in cool- and coldwater fisheries have been observed, including ogaa/walleye Sander vitreus . In response to population declines, agencies have implemented rehabilitation efforts, and the frequency and intensity of efforts have increased recently given declines. Evaluating intervention outcomes is critical for institutional learning and to understand strategy effectiveness, but is difficult to do when multiple interventions are applied concurrently and in the absence of replication or controls. This review documents walleye rehabilitation efforts in the upper Midwest U.S., where a rehabilitation effort was defined as a coordinated effort with the stated intention to restore a self-sustaining population such that it required limited-to-no further intervention. We discuss: (1) strategies used; (2) similarities and differences in metrics of success; (3) factors leading to success; and (4) recommendations that may increase future successful rehabilitation. Strategies included harvest regulation changes, stocking, fish community manipulations, habitat enhancement, and partner discussions. Overall, evaluations of environmental, habitat, and fish community factors causing walleye population declines were not included in most rehabilitation plans before implementation. This review highlights an increased need for ecosystem-based fisheries management principles and cultivating ecological conditions that favor walleye as a potential path for future rehabilitation plans. Lessons drawn from rehabilitation plans are applicable to global inland fisheries to inform the conservation of declining fish populations.

Michigan, Minnesota, Wisconsin↗