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At least 1,045 records · Page 58Linked to original sources
USGS2018

Population genomic analysis suggests strong influence of river network on spatial distribution of genetic variation in invasive saltcedar across the southwestern United States

Understanding the complex influences of landscape and anthropogenic elements that shape the population genetic structure of invasive species provides insight into patterns of colonization and spread. The application of landscape genomics techniques to these questions may offer detailed, previously undocumented insights into factors influencing species invasions. We investigated the spatial pattern of genetic variation and the influences of landscape factors on population similarity in an invasive riparian shrub, saltcedar ( Tamarix L.) by analysing 1,997 genomewide SNP markers for 259 individuals from 25 populations collected throughout the southwestern United States. Our results revealed a broad-scale spatial genetic differentiation of saltcedar populations between the Colorado and Rio Grande river basins and identified potential barriers to population similarity along both river systems. River pathways most strongly contributed to population similarity. In contrast, low temperature and dams likely served as barriers to population similarity. We hypothesize that large-scale geographic patterns in genetic diversity resulted from a combination of early introductions from distinct populations, the subsequent influence of natural selection, dispersal barriers and founder effects during range expansion.

Molecular Ecology↗
USGS1999

Use of generalized linear models and digital data in a forest inventory of northern Utah

Forest inventories, like those conducted by the Forest Service's Forest Inventory and Analysis Program (FIA) in the Rocky Mountain Region, are under increased pressure to produce better information at reduced costs. Here we describe our efforts in Utah to merge satellite-based information with forest inventory data for the purposes of reducing the costs of estimates of forest population totals and providing spatial depiction of forest resources. We illustrate how generalized linear models can be used to construct approximately unbiased and efficient estimates of population totals while providing a mechanism for prediction in space for mapping of forest structure. We model forest type and timber volume of five tree species groups as functions of a variety of predictor variables in the northern Utah mountains. Predictor variables include elevation, aspect, slope, geographic coordinates, as well as vegetation cover types based on satellite data from both the Advanced Very High Resolution Radiometer (AVHRR) and Thematic Mapper (TM) platforms. We examine the relative precision of estimates of area by forest type and mean cubic-foot volumes under six different models, including the traditional double sampling for stratification strategy. Only very small gains in precision were realized through the use of expensive photointerpreted or TM-based data for stratification, while models based on topography and spatial coordinates alone were competitive. We also compare the predictive capability of the models through various map accuracy measures. The models including the TM-based vegetation performed best overall, while topography and spatial coordinates alone provided substantial information at very low cost.

Utah↗
USGS2006

Seaside, Oregon, Tsunami Pilot Study— Modernization of FEMA flood hazard maps: GIS data

Introduction: The Federal Emergency Management Agency (FEMA) Federal Insurance Rate Map (FIRM) guidelines do not currently exist for conducting and incorporating tsunami hazard assessments that reflect the substantial advances in tsunami research achieved in the last two decades; this conclusion is the result of two FEMA-sponsored workshops and the associated Tsunami Focused Study (Chowdhury and others, 2005). Therefore, as part of FEMA's Map Modernization Program, a Tsunami Pilot Study was carried out in the Seaside/Gearhart, Oregon, area to develop an improved Probabilistic Tsunami Hazard Analysis (PTHA) methodology and to provide recommendations for improved tsunami hazard assessment guidelines (Tsunami Pilot Study Working Group, 2006). The Seaside area was chosen because it is typical of many coastal communities in the section of the Pacific Coast from Cape Mendocino to the Strait of Juan de Fuca, and because State agencies and local stakeholders expressed considerable interest in mapping the tsunami threat to this area. The study was an interagency effort by FEMA, U.S. Geological Survey, and the National Oceanic and Atmospheric Administration (NOAA), in collaboration with the University of Southern California, Middle East Technical University, Portland State University, Horning Geoscience, Northwest Hydraulics Consultants, and the Oregon Department of Geological and Mineral Industries. We present the spatial (geographic information system, GIS) data from the pilot study in standard GIS formats and provide files for visualization in Google Earth, a global map viewer.

Oregon↗
USGS2016

GIS-based identification of areas that have resource potential for critical minerals in six selected groups of deposit types in Alaska

Alaska has considerable potential for undiscovered mineral resources. This report evaluates potential for undiscovered critical minerals in Alaska. Critical minerals are those for which the United States imports more than half of its total supply and which are largely derived from nations that cannot be considered reliable trading partners. In this report, estimated resource potential and certainty for the state of Alaska are analyzed and mapped for the following six selected mineral deposit groups that may contain one or more critical minerals: (1) rare earth elements-thorium-yttrium-niobium(-uranium-zirconium) [REE-Th-Y-Nb(-U-Zr)] deposits associated with peralkaline to carbonatitic igneous intrusive rocks; (2) placer and paleoplacer gold (Au) deposits that in some places might also produce platinum group elements (PGE), chromium (Cr), tin (Sn), tungsten (W), silver (Ag), or titanium (Ti); (3) platinum group elements(-cobalt-chromium-nickel-titanium-vanadium) [PGE(-Co-Cr-Ni-Ti-V)] deposits associated with mafic to ultramafic intrusive rocks; (4) carbonate-hosted copper(-cobalt-silver-germanium-gallium) [Cu(-Co-Ag-Ge-Ga)] deposits; (5) sandstone-hosted uranium(-vanadium-copper) [U(-V-Cu)] deposits; and (6) tin-tungsten-molybdenum(-tantalum-indium-fluorspar) [Sn-W-Mo(-Ta-In-fluorspar)] deposits associated with specialized granites. This study used a data-driven, geographic information system (GIS)-implemented method to identify areas that have mineral resource potential in Alaska. This method systematically and simultaneously analyzes geoscience data from multiple geospatially referenced datasets and uses individual subwatersheds (12-digit hydrologic units) as the spatial unit of classification. The final map output uses a red, yellow, green, and gray color scheme to portray estimated relative potential (High, Medium, Low, Unknown) for each of the six groups of mineral deposit types, and it indicates the relative certainty (High, Medium, Low) of that estimate for each 12-digit hydrologic unit through color shading. Accompanying tables describe the data layers employed to score favorability for the presence of each mineral deposit group, the values assigned for specific analysis parameters, and the relative weighting of each data layer that contributes to estimated measures of potential and certainty . Core datasets used include the Alaska Geochemical Database, Version 2.0 (AGDB2); the Alaska Division of Geological & Geophysical Surveys (ADGGS) web-based geochemical database; the digital “Geologic Map of Alaska;” the Alaska Resource Data File (ARDF); and aerial gamma-ray surveys flown as part of the National Uranium Resource Evaluation (NURE) Program by the U.S. Department of Energy. Maps accompanying this report illustrate the scores for estimated mineral resource potential for the six deposit groups for the state of Alaska. Areas that have known potential, as well as new areas that were not previously known to have potential, for the targeted minerals and deposit groups are identified and described. Numerous areas in Alaska, some of them large, have high potential for one or more of the selected groups of deposit types within Alaska. Contributors Matthew Granitto, Timothy S. Hayes, James V. Jones, III, Susan M. Karl, Keith A. Labay, Jeffrey L. Mauk, Jeanine M. Schmidt, Nora B. Shew, Erin Todd, Bronwen Wang, Melanie B. Werdon, and Douglas B. Yager

Alaska↗
USGS2004

Water-resources-related information for the Milwaukee Metropolitan Sewerage District planning area, Wisconsin, 1970-2002

The Milwaukee Metropolitan Sewerage District (MMSD) Corridor Study is a three-phase project designed to improve the understanding of water resources in the stream corridors of the MMSD planning area by initially compiling existing data and using the compiled information to develop 3-year baseline and long-term monitoring plans. This report is one of the products of Phase I of the Corridor Study. A literature review of surface-water-quality, surface water- quantity, and ecology studies conducted from 1970 through 2001 was completed and is summarized in this report. An inventory of Geographic Information System spatial coverages available for the MMSD planning area has been assembled. A database of water, sediment, and tissue (fish, shellfish, and others) chemistry, macroinvertebrates, fish, algae, habitat, geomorphic, and other physical and ecological data was compiled from data sets from MMSD, U.S. Geological Survey, Wisconsin Department of Natural Resources, and the U.S. Environmental Protection Agency. More than 2.7 million results are available in the MMSD Corridor Study database and the compilation of multiple datasets allows for retrieving data from a central database rather than from each of the source datasets. Data for 1970 through 2002 were collected for the 420-square-mile planning area by various agencies using different field data-collection and laboratory analysis methods. Chemical constituents and ecological components that are important to an urban setting and well represented in the database were selected for further investigation. Each constituent or component is described in this report with some or all of the following: a text summary, map of sampling locations, and in some cases median concentrations, statistical distributions of concentrations by subwatershed, table of summary statistics by subwatershed, and graphs of temporal and (or) seasonal trends. Physical data presented in the report include streamflow, stream stage, and precipitation data. Chemical indicators of water quality presented in the report include field measurements and miscellaneous constituents (pH, alkalinity, specific conductance, hardness, dissolved oxygen, biochemical oxygen demand, and chloride), sediment (total suspended solids and suspended sediment), nutrients (total nitrogen, nitrate, Kjeldahl nitrogen, total phosphorus, and dissolved phosphorus), trace elements (cadmium, mercury, copper, lead, arsenic, chromium, nickel, and zinc), pesticides (historically used pesticides and pesticides still in use), and polychlorinated biphenyls. Ecological indicators of water quality discussed in the report include community surveys of macroinvertebrates and fish, chlorophyll a concentrations, habitat assessments and channel-measurement data, and fecal coliform and E. coli bacterial counts. In addition to the compilation of the database, a major purpose of this investigation was to identify additional sampling that should be conducted under the baseline monitoring phase, which will be the second phase of the Corridor Study. Additional sampling may include: • Some subwatersheds, such as those in the headwaters. • Emerging contaminants such as pharmaceuticals and personal care products (PPCPs), human hormones, organic wastewater contaminants, and other constituents that result from human activity. • E. coli, which can serve as an indicator of health risk to swimmers and other recreational water users. • Pesticides in all media. • PCBs. • Trace elements in water, bed sediment, and tissues (fish, shellfish, and others). • Samples during winter months or during early snowmelt episodes to address constituents such as chloride and some nutrients that have seasonal variability and that may be affected by factors such as road deicing during the winter. • Samples for macroinvertebrate and fish-community data and habitat assessments. • Physical data such as stream-channel cross-section profiles, bridge-scour assessments, flood-plain maps, structures, and shoreline conditions.

Wisconsin↗
USGS2003

The U.S. Geological Survey land remote sensing program

The U.S. Geological Survey has been a provider of remotely sensed information for decades. As the availability and use of satellite data has grown, USGS has placed increasing emphasis on expanding the knowledge about the science of remote sensing and on making remotely sensed data more accessible. USGS encourages widespread availability and distribution of these data and through its programs, encourages and enables a variety of research activities and the development of useful applications of the data. The science of remote sensing has great potential for assisting in the monitoring and assessment of the impacts of natural disasters, management and analysis of environmental, biological, energy, and mineral investigations, and supporting informed public policy decisions. By establishing the Land Remote Sensing Program (LRS) as a major unit of the USGS Geography Program, USGS has taken the next step to further increase support for the accessibility, understanding, and use of remotely sensed data. This article describes the LRS Program, its mission and objectives, and how the program has been structured to accomplish its goals.

Cartography and Geographic Information Science↗
USGS2022

What makes wildfires destructive in California?

As human impacts from wildfires mount, there is a pressing need to understand why structures are lost in destructive fires. Despite growing research on factors contributing to structure loss, fewer studies have focused on why some fires are destructive and others are not. We characterized overall differences between fires that resulted in structure loss (“destructive fires”) and those that did not (“non-destructive wildfires”) across three California regions. Then, we performed statistical analyses on large fires only (≥100 ha) to distinguish the primary differences between large destructive large fires and large non-destructive fires. Overall, destructive fires were at least an order of magnitude larger than non-destructive fires, with the largest area burned varying by season in different regions. Fire severity was also significantly higher in destructive than non-destructive fires. The statistical analysis showed that, in the San Francisco Bay Area and the northern Sierra Nevada foothills, proximity to the Wildland Urban Interface (WUI) was by far the most important factor differentiating destructive and non-destructive wildfires, followed by different combinations of short-term weather, seasonal climate, topography, and vegetation productivity. In Southern California, wind velocity on the day of the fire ignition was the top factor, which is consistent with previous assumptions that wind-driven fires tend to be most destructive and most of the destruction occurs within the first 24 h. Additionally, Southern California’s high population density increases the odds that a human-caused wildfire may occur during a severe fire-weather event. The geographical differences among regions and the variation of factors explaining the differences between large destructive and large non-destructive fires reflects the complexity inherent in decision-making for reducing wildfire risk. Land use planning to reduce future exposure of housing development to fire and increased focus on wildfire ignition prevention emerge as two approaches with substantial potential.

California↗
USGS2019

Depth determination of the 2010 El Mayor‐Cucapah earthquake sequence (M ≥ 4.0)

The 2010 M W 7.2 El Mayor‐Cucapah earthquake ruptured a zone of ~120 km in length in northern Baja California. The geographic distribution of this earthquake sequence was well constrained by waveform relocation. The depth distribution, however, was poorly determined as it is near the edge of, or outside, the Southern California Seismic Network. Here we use two complementary methods to constrain the focal depths of moderate‐sized events ( M ≥ 4.0) in this sequence. We first determine the absolute earthquake depth by modeling the regional depth phases at high frequencies (~1 Hz). We mainly focus on Pn and its depth phases pPn and sPn , which arrive early at regional distance and are less contaminated by crustal multiples. To facilitate depth phase identification and to improve signal‐to‐noise ratio, we take advantage of the dense Southern California Seismic Network and use array analysis to align and stack Pn waveforms. For events without clear depth phases, we further determine their relative depths with respect to those with known depths using differential travel times of the Pn , direct P , and direct S phases recorded for event pairs. Focal depths of 93 out of 122 M ≥ 4.0 events are tightly constrained with absolute uncertainty of about 1 km. Aftershocks are clustered in the depth range of 3–10 km, suggesting a relatively shallow seismogenic zone, consistent with high surface heat flow in this region. Most aftershocks are located outside or near the lower terminus of coseismic high‐slip patches of the main shock, which may be governed by residual strains, local stress concentration, or postseismic slip.

Baja California↗
USGS2001

Evaluation of nonpoint-source contamination, Wisconsin: water year 1999

The objective of the watershed-management evaluation monitoring program in Wisconsin is to evaluate the effectiveness of best-management practices (BMPs) for controlling nonpoint-source pollution in rural and urban watersheds. This progress report provides a summary of the data collected by the U.S Geological Survey for the program and a discussion of the results from several different detailed analyses conducted within this program. A land-use and best-management-practice inventory is ongoing for each evaluation monitoring project to track the different sources of nonpointsource pollution in each watershed and to document implementation of best-management programs that may cause changes in the water quality of streams. Updated information is gathered each year, mapped, and stored in a geographic-information-system database. Summaries of BMP-implementation data collected through the 1999 water year are presented in this report. Suspended sediment and total phosphorus storm-load and annual-load data are summarized for eight rural sites. For all 8 rural sites a sufficient number of pre-BMP storm samples have been collected; for two of the sites (Brewery and Garfoot Creeks), a sufficient number of post-BMP storm samples have been collected to allow for a final assessment of the effectiveness of the BMPs. For the remaining sites, numerous transitional storm samples have been collected, but in all cases BMP implementation has lagged such that there are insufficient post-BMP storm samples for final analysis. For two sites (Rattlesnake and Kuenster Creeks) there are not enough planned BMPs to warrant further data collection. Continuous dissolved-oxygen data collected at 5 rural sites are summarized. In terms of instantaneous concentrations when comparing pre-BMP data to transitional and post-BMP data, the general trend is a reduction in the number of days that the dissolved oxygen concentration was less than the state standard. These results are anecdotal, however; the differences have not been rigorously tested statistically. For a level of dissolved oxygen sustained over a continuous hour, the results are mixed. In general the number of days with standard violations has decreased, but there are notable exceptions. For the four urban streams, the pre-BMP data were examined to determine the level of improvement that could potentially be detected with a statistical analysis. Regression analyses were performed relating constituent loads of suspended solids, total phosphorus and total copper to various independent variables, including seasonal terms and variables related to rainfall. On the basis of the residuals from the regressions, there is a wide range of potential change that could be detected with an analysis of pre- and post-BMP loads. This is likely a result of the high degree of variability in the data, particularly from site to site. For suspended solids, total phosphorus, and total recoverable copper the minimum detectable changes ranges from 20-80, 30-70 and 30-90 percent, respectively. For two of the eight rural streams (Rattlesnake and Kuenster Creeks) minimal BMP implementation has occurred, hence a comparison of pre- BMP and data collected after BMP implementation began is not warranted. For two other rural streams (Brewery and Garfoot Creeks), BMP implementation is complete. For the four remaining rural streams (Bower, Otter, Eagle, and Joos Valley Creeks), the pre-BMP load data were compared to the transitional data to determine if significant reductions in the loads have occurred as a result of the BMP implementation to date. For all sites, the actual constituent loads for suspended solids and total phosphorus exhibit no statistically significant reductions after BMP installation. Multiple regressions were used to remove some of the natural variability in the data. Based on the residual analysis, for Otter Creek, there is a significant difference in the suspended-solids regression residuals between the pre-BMP and transitional periods, indicating a potential reduction as a result of the BMP implementation after accounting for natural variability. For Joos Valley Creek, the residuals for suspended solids and total phosphorus both show a significant reduction after accounting for natural variability. It is possible that the other sites will also show statistically significant reductions in suspended solids and total phosphorus if additional BMPs are implemented.

Wisconsin↗
USGS2011

Characterization of salinity and selenium loading and land-use change in Montrose Arroyo, western Colorado, from 1992 to 2010

Salinity and selenium are naturally occurring and perva-sive in the lower Gunnison River Basin of Colorado, includ-ing the watershed of Montrose Arroyo. Although some of the salinity and selenium loading in the Montrose Arroyo study area is from natural sources, additional loading has resulted from the introduction of intensive irrigation in the water-shed. With increasing land-use change and the conversion from irrigated agricultural to urban land, land managers and stakeholders need information about the long-term effects of land-use change on salinity and selenium loading. In response to the need to advance salinity and selenium science, the U.S. Geological Survey, in cooperation with the Bureau of Reclamation, Colorado River Basin Salinity Control Forum, and Colorado River Water Conservation District, developed a study to characterize salinity and selenium loading and how salinity and selenium sources may relate to land-use change in Montrose Arroyo. This report characterizes changes in salinity and selenium loading to Montrose Arroyo from March 1992 to February 2010 and the magnitude of land-use change between unirrigated desert, irrigated agricultural, and urban land-use/land-cover types, and discusses how the respective loads may relate to land-use change. Montrose Arroyo is an approximately 8-square-mile watershed in Montrose County in western Colorado. Salinity and selenium were studied in Montrose Arroyo in a 2001 study as part of a salinity- and selenium-control lateral project. The robust nature of the historical dataset indicated that Montrose Arroyo was a prime watershed for a follow-up study. Two sites from the 2001 study were used to monitor salinity and selenium loads in Montrose Arroyo in the follow-up study. Over the period of 2 water years and respective irrigation seasons (2008-2010), 27 water-quality samples were collected and streamflow measurements were made at the historical sites MA2 and MA4. Salinity and selenium concen-trations, loads, and streamflow were compared between the pre-lateral-project and post-growth periods and between the post-lateral-project and post-growth periods. No significant differences in streamflow, salinity (concen-tration and load), or selenium (concentration and load) were found at MA4 between the pre-lateral project and post-growth periods or between the post-lateral-project and post-growth periods. The statistical analysis indicated no significant dif-ferences in streamflow or salinity (both concentration and load) between the pre-lateral-project and post-growth periods or between the post-lateral-project and post-growth periods at MA2; however, selenium concentrations and loads were significantly greater between the pre-lateral-project and post-growth periods and between the post-lateral-project and post-growth periods at MA2. Land-use change between MA4 and MA2 may have contributed to the determined differences in selenium values, but the specific mechanisms causing the increases between periods are unknown. The size of the urbanized area in Montrose Arroyo was quantified for 1993, 2002, and 2009 by using a geographic information system (GIS) with imagery from the specified years. The greatest change in land use from 1993 to 2009 was the increase of urban land due to conversion from irrigated agricultural land. The conversion of previously unirrigated desert to urban land or irrigated agriculture could become more common if urbanization and development expands into the eastern part of the watershed because a majority of the un-urbanized land in eastern Montrose Arroyo is unirrigated desert. By applying GIS to the City of Montrose 2008 com-prehensive growth plan, it was estimated that approximately 786 acres of previously irrigated agricultural land will be converted to urban land and 689 acres of unirrigated desert will be converted to urban land under the plan scenario. New development on previously unirrigated land in shale areas would likely increase the potential for mobilization of sele-nium and salinity from new sources to Montrose Arroyo and the Lower Gunnison River Basin.

Scientific Investigations Report↗
USGS2003

Use of retrospective data to assess ecotoxicological monitoring needs for terrestrial vertebrates residing in Atlantic coast estuaries

The “Contaminant Exposure and Effects–Terrestrial Vertebrates” (CEE-TV) database contains 4,336 records of ecotoxicological information for free-ranging amphibians, reptiles, birds, and mammals residing in Atlantic and Florida Gulf coast estuaries and their drainages. To identify spatial data gaps, those CEE-TV records for which the specific study location were known ( n =2,740) were combined with watershed and wildlife management unit boundaries using Geographic Information Systems software. The US Environmental Protection Agency's Index of Watershed Indicators (IWI), which classifies watersheds based on water quality and their vulnerability to pollution, was used to prioritize these data gaps. Of 136 watersheds in the study area, 15 that are classified by the IWI as having water quality problems or high vulnerability to pollution lacked terrestrial vertebrate ecotoxicological monitoring or research in the past decade. Older studies within some of these watersheds documented high levels of contaminants in wildlife tissues. Of 90 National Wildlife Refuge units, 42 without current data fall within watersheds of concern. Of 40 National Park units larger than 1 km 2 , 17 without current data fall within watersheds of concern. Issues encountered in this analysis highlighted the need for spatially and temporally replicated field monitoring programs that utilize random sampling. Without data from such studies, it will be difficult to perform unbiased assessments of regional trends in contaminant exposure and effects in terrestrial vertebrates.

Ecotoxicology↗
USGS1996

Reflected seismic waves and their effect on strong shaking during the 1989 Loma Prieta, California, earthquake

Our data indicate that critical and postcritical reflections from crustal layers and the Moho produced increased shaking at discrete distances along the San Francisco Peninsula during the 1989 Loma Prieta earthquake. These reflections may have produced an increase in amplitude that is as much as 10 times greater than that of the direct arrival. Peak amplitude-distance patterns measured from explosive sources, synthetic seismograms, aftershocks, and the mainshock of the 1989 Loma Prieta earthquake indicate that (1) point sources, such as explosions, produce similar peak amplitude-distance relations as distributed, double-couple sources when the crustal structure is approximately a Poisson solid; (2) peak amplitudes from smaller point sources (explosions) may be scaled to those of larger sources (earthquakes); and (3) reflections caused a pattern of high amplitudes at specific distances along the San Francisco Peninsula that geographically correlates with areas of reported damage following from the Loma Prieta mainshock. Our study indicates that critical and postcritical reflections were stronger influences on the locations of strong shaking than local geology because a number of sites around the San Francisco Bay that are underlain by unconsolidated sediments experienced much less shaking than sites that were underlain by hard rock. Furthermore, some severely shaken hard-rock sites were farther from the epicenter than many of the less severely shaken “soft-sediment” sites. Models of the regional crustal structure and seismic-wave propagation paths may be useful in identifying sites around the San Francisco Bay region that are at risk due to reflected seismic energy, and this type of analysis may be useful in other seismically active regions.

California↗
USGS2019

Hurricane Sandy impacts on coastal wetland resilience

The goal of this research was to evaluate the impacts of Hurricane Sandy on surface elevation trends in estuarine marshes located across the northeast region of the United States from Virginia to Maine using data from an opportunistic (in other words, not strategic) and collaborative network (from here on, an opportunistic network) of surface elevation table-marker horizon (SET-MH) stations. First, we built a data-base of metadata for 965 individual stations from 96 unique geographical locations that included the location, geomorphic setting, and wetland type for each SET-MH station. The dominant estuarine settings included in the analyses were back-barrier lagoonal marshes and emergent marshes along embayments and tidal tributaries. We then calculated prestorm elevation trends to compare to poststorm elevation measurements to determine the storm impact on each station trend. We hypothesized that the effect of Hurricane Sandy on marsh elevation trends would differ by position relative to landfall (right or left) and distance from landfall in southern New Jersey, as both of these variables influence the presence or absence of storm surge as a result of the physical characteristics of tropical cyclones (in other words, strongest winds typically occur to the right of landfall). Storm surge was spatially less extensive and less deep (~1 meter [m]) in marshes located to the left (in other words, south) of landfall compared to marshes located to the right (in other words, north) of landfall where storm surge covered a larger area and was deeper (3–4 m). About 63 percent of 223 eligible stations had a poststorm trend that was similar to the prestorm trend (in other words, less than ±5 millimeters [mm]), indicating little storm impact on elevation trends at those sites. The remaining 37 percent of stations exhibited significant poststorm deviations from the prestorm trend (in other words, greater than ±5 mm). Of these, stations located to the left of landfall had a significant and greater deviation in their elevation trend, and the deviation was more likely to be positive (elevation gain) compared to marshes located to the right of landfall, which had a significant deviation in their elevation trend that was more likely to be negative (elevation loss). This finding is directly related to storm surge impacts on marsh sediment deposition, where deep storm surge (3–4 m) results in sediment deposition in habitats inland of coastal marshes but less so in the marshes themselves. Substrate compaction by the storm surge over-burden may have contributed to elevation loss, but this was not measured because sufficient marker horizon data were not available for analysis. In contrast, to the left of landfall the wind-driven flooding of sediment laden water pushed into the headwaters of rivers and small bays with an ~1 m surge, and resulted in more prevalent sediment deposition on the marsh surfaces and elevation gain. In general, the findings support previous research showing that the physical characteristics of the storm (for example, wind speed, storm surge height, impact angle of landfall) combined with the local wetland conditions (for example, marsh productivity, groundwater level, tide height) are important factors determining a storm’s impact on soil elevation, and that the soil elevation response can vary widely among multiple wetland sites impacted by the same storm and among different storms for the same wetland site. The final objective of this project was to create a framework using metadata from the opportunistic network of SET-MH stations that could be used to develop a strategic monitoring network designed to address specific climate change impacts and related phenomena identified by land managers and stakeholders. We evaluated the spatial distribution and density of SET-MH stations in relation to geographic coverage, marsh setting, availability of public land, and historical storm surge footprints and hurricane return intervals in order to identify gaps in our understanding of risk and our ability to assess it. Analyses revealed that the general geographic coverage of SET-MH stations is limited given the low percentage of marsh patches with stations, low density of stations, the clumped distribution of stations, and the often limited and uneven distribution of stations in wetlands with a high historical frequency of hurricane strikes and storm surge impacts. These findings can be used by managers and planners to inform the creation of a strategic monitoring network that can, in turn, inform management and adaptation plans for coastal resources in the region. Final plan designs will need to consider financial and infrastructural support required for station maintenance, as well as data collection and management over the long term.

Open-File Report↗
USGS2023

Evaluation of threatened, endangered, and rare fish species and communities of the St. Lawrence River and its tributaries in the United States

Biodiversity is responsible for important ecological processes like productivity and ecosystem stability, and rare species are a major component of biodiversity. Rarity increases a species' vulnerability to disturbances and also makes them difficult to study. Globally, species of freshwater systems are some of the most threatened, and evaluation of rare freshwater species and their habitats is needed to help preserve natural flexibility and ecological function. We conducted an analysis of full fish communities of the upper St. Lawrence River and its major US tributaries, with the goals of determining species locations and abundances, associated environmental conditions, the distribution of distinct fish assemblages across the landscape (with emphasis on communities supporting rare species), and potential threats. From 2009 to 2015, the US Geological Survey (USGS) and Saint Regis Mohawk Tribe (SRMT) worked together using standardized methods to collect community samples within 4 different aquatic realms (shallow and deep lentic, and small and large lotic systems) and determine species-specific fish abundances, frequencies of occurrence, and associated habitat signatures and spatial distributions. Distinct fish assemblages and associated habitat conditions were objectively identified by multivariate and hypothesis-testing methods. We used a geographic information system (GIS) to spatially associate habitat, biotic, and landscape attributes within each stream reach throughout the study area, facilitating quantification of distribution patterns. Comparisons with historical data provided estimates of loss or gain of threatened and endangered species (T&E) colonies. We developed a disturbance index to highlight potential threats to aquatic species. More than 140,000 fishes of 87 species were collected from a total of 1140 sample sites, covering 278 stream reaches, including the endangered Notropis anogenus (Pugnose Shiner), and threatened Hiodon tergisus (Mooneye), Etheostoma pellucidum (Eastern Sand Darter), and Acipenser fulvescens (Lake Sturgeon). We identified 50 distinct fish assemblages differing in species composition, abundance, and/or diversity, but only 13 of those assemblages included a T&E species. The rareness, extent, and patchiness of fish assemblages created a mosaic of fish communities across the landscape, from headwaters to the mainstem of the St. Lawrence River. Comparisons with historic surveys (1978–2008) showed a stable number of T&E species colonies or an increase for some species. The geographic distribution of multimetric disturbance index values showed where combinations of disturbances to fish habitats might affect rare fish species and aquatic communities in the region. The species–habitat associations and fish assemblage distributions can be used for evaluation of species, communities, or habitats that may need protection or restoration.

St. Lawrence River study area↗
USGS2014

Simulation of groundwater flow and the interaction of groundwater and surface water in the Willamette Basin and Central Willamette subbasin, Oregon

Full appropriation of tributary streamflow during summer, a growing population, and agricultural needs are increasing the demand for groundwater in the Willamette Basin. Greater groundwater use could diminish streamflow and create seasonal and long-term declines in groundwater levels. The U.S. Geological Survey (USGS) and the Oregon Water Resources Department (OWRD) cooperated in a study to develop a conceptual and quantitative understanding of the groundwater-flow system of the Willamette Basin with an emphasis on the Central Willamette subbasin. This final report from the cooperative study describes numerical models of the regional and local groundwater-flow systems and evaluates the effects of pumping on groundwater and surface‑water resources. The models described in this report can be used to evaluate spatial and temporal effects of pumping on groundwater, base flow, and stream capture. The regional model covers about 6,700 square miles of the 12,000-square mile Willamette and Sandy River drainage basins in northwestern Oregon—referred to as the Willamette Basin in this report. The Willamette Basin is a topographic and structural trough that lies between the Coast Range and the Cascade Range and is divided into five sedimentary subbasins underlain and separated by basalts of the Columbia River Basalt Group (Columbia River basalt) that crop out as local uplands. From north to south, these five subbasins are the Portland subbasin, the Tualatin subbasin, the Central Willamette subbasin, the Stayton subbasin, and the Southern Willamette subbasin. Recharge in the Willamette Basin is primarily from precipitation in the uplands of the Cascade Range, Coast Range, and western Cascades areas. Groundwater moves downward and laterally through sedimentary or basalt units until it discharges locally to wells, evapotranspiration, or streams. Mean annual groundwater withdrawal for water years 1995 and 1996 was about 400 cubic feet per second; irrigation withdrawals accounted for about 80 percent of that total. The upper 180 feet of productive aquifers in the Central Willamette and Southern Willamette subbasins produced about 70 percent of the total pumped volume. In this study, the USGS constructed a three-dimensional numerical finite-difference groundwater-flow model of the Willamette Basin representing the six hydrogeologic units, defined in previous investigations, as six model layers. From youngest to oldest, and [generally] uppermost to lowermost they are the: upper sedimentary unit, Willamette silt unit, middle sedimentary unit, lower sedimentary unit, Columbia River basalt unit, and basement confining unit. The high Cascade unit is not included in the groundwater-flow model because it is not present within the model boundaries. Geographic boundaries are simulated as no-flow (no water flowing in or out of the model), except where the Columbia River is simulated as a constant hydraulic head boundary. Streams are designated as head-dependent-flux boundaries, in which the flux depends on the elevation of the stream surface. Groundwater recharge from precipitation was estimated using the Precipitation-Runoff Modeling System (PRMS), a watershed model that accounts for evapotranspiration from the unsaturated zone. Evapotranspiration from the saturated zone was not considered an important component of groundwater discharge. Well pumping was simulated as specified flux and included public supply, irrigation, and industrial pumping. Hydraulic conductivity values were estimated from previous studies through aquifer slug and permeameter tests, specific capacity data, core analysis, and modeling. Upper, middle and lower sedimentary unit horizontal hydraulic conductivity values were differentiated between the Portland subbasin and the Tualatin, Central Willamette, and Southern Willamette subbasins based on preliminary model results.

Oregon↗
USGS2020

Temporal and spatial changes in Myotis lucifugus acoustic activity before and after white-nose syndrome on Fort Drum Army Installation, New York, USA

Changes to bat distribution and habitat associations at the local to sub-landscape scale in the post white-nose syndrome (WNS) environment have received little attention to date despite being critical information for managers. To better understand the spatial nature of bat population declines, we modelled both activity patterns and occupancy from acoustic surveys for the Myotis lucifugus (little brown bat) on Fort Drum Military Installation in New York, USA over 15 summers (2003–2017) that span the pre-WNS, WNS-advent (2008) and post-WNS periods, using a set of generalized linear mixed models and geospatial analysis. Our best supported model indicated significant differences between years with significant declines in activity post-WNS. M. lucifugus activity was most closely associated with woody wetland habitats over the study period, however, the spatial patterns of high activity areas were variable over years, with the areal extent of these high activity areas decreasing post-WNS. Our best supported occupancy model varied by year. However, the null occupancy model [Ψ(.)] was either competing (within 2 ΔAIC units) or was the best supported model. Meaning that none of our environmental variables seemed to impact occupancy, and when they did, these differences were not significant. There was high disagreement between our relative activity models and predictions compared to our occupancy models, suggesting that geographic spatial scale and the resolution of the data impacts model outcome. Our results indicate that continued acoustic monitoring of bat species in the Northeast to assess ongoing temporal and spatial changes in habitat associations and to provide direction for future mist-netting studies should rely more on relative activity as the metric of choice rather than site occupancy.

New York↗
USGS2011

Hillslope chemical weathering across Paraná, Brazil: a data mining-GIS hybrid approach

Self-organizing map (SOM) and geographic information system (GIS) models were used to investigate the nonlinear relationships associated with geochemical weathering processes at local (~100 km 2 ) and regional (~50,000 km 2 ) scales. The data set consisted of 1) 22 B-horizon soil variables: P, C, pH, Al, total acidity, Ca, Mg, K, total cation exchange capacity, sum of exchangeable bases, base saturation, Cu, Zn, Fe, B, S, Mn, gammaspectrometry (total count, potassium, thorium, and uranium) and magnetic susceptibility measures; and 2) six topographic variables: elevation, slope, aspect, hydrological accumulated flux, horizontal curvature and vertical curvature. It is characterized at 304 locations from a quasi-regular grid spaced about 24 km across the state of Paraná. This data base was split into two subsets: one for analysis and modeling (274 samples) and the other for validation (30 samples) purposes. The self-organizing map and clustering methods were used to identify and classify the relations among solid-phase chemical element concentrations and GIS derived topographic models. The correlation between elevation and k-means clusters related the relative position inside hydrologic macro basins, which was interpreted as an expression of the weathering process reaching a steady-state condition at the regional scale. Locally, the chemical element concentrations were related to the vertical curvature representing concave–convex hillslope features, where concave hillslopes with convergent flux tends to be a reducing environment and convex hillslopes with divergent flux, oxidizing environments. Stochastic cross validation demonstrated that the SOM produced unbiased classifications and quantified the relative amount of uncertainty in predictions. This work strengthens the hypothesis that, at B-horizon steady-state conditions, the terrain morphometry were linked with the soil geochemical weathering in a two-way dependent process: the topographic relief was a factor on environmental geochemistry while chemical weathering was for terrain feature delineation.

Parana↗
USGS2018

Mercury methylation and bioaccumulation in Sinclair Inlet, Kitsap County, Washington

The U.S. Geological Survey evaluated the transformation of mercury to bioavailable methylmercury in Sinclair Inlet, Kitsap County, Washington, and assessed the effect of the transformation processes on the mercury burden in marine organisms and sediment. In August 2008, samples of sediment, water, and biota from six sites in Sinclair Inlet and three bays representative of Puget Sound embayments were collected. The extensive sediment sampling included analysis of methylmercury in sediment and porewater, estimates of methylation production potential, and analyses of ancillary constituents associated with organic carbon and reduction-oxidation (redox) conditions to assist in interpreting the mercury results. Analyses of methylmercury in water overlying incubated cores provided an estimate of the release of methylmercury to the water column. Collection of samples for mercury species in the aqueous, particulate (suspended solids), and biological phases, and for ancillary carbon and nitrogen constituents in surface water, continued, on about a monthly schedule, at four stations through August 2009. In February, June, and August 2009, seasonal sediment samples were collected at 20 stations distributed between greater Sinclair Inlet and Operable Unit B Marine of the Bremerton naval complex, Bremerton, Washington, to examine geographical and seasonal patterns of mercury biogeochemistry of sediment in Sinclair Inlet. At six of these seasonal sediment stations, porewater was collected and triplicate core incubation experiments were done. Median sediment-methylmercury concentrations were not statistically different between the representative bays and Sinclair Inlet. The percentage of sediment methylmercury (relative to total mercury) was actually lower in the Sinclair Inlet sites compared with the representative bays, reflecting the higher sediment total mercury concentration for the Sinclair Inlet stations compared with the representative bays. Likewise, median sediment methylmercury concentrations were not statistically different between the greater Sinclair Inlet stations and the Bremerton naval complex stations; whereas the percentage of sediment methylmercury to total mercury was lower in the Bremerton naval complex due to higher sediment total mercury concentrations than the greater Sinclair Inlet stations. The biogeochemical characteristics of each station, measured by redox, organic carbon, and the seasonal availability of nutrients controlled methylmercury biogeochemistry. Mercury methylation production potential was a function of temperature, concentration of total mercury in sediment, and the percentage of ferrous iron (relative to total measured iron) across all sites. Methylmercury porewater concentrations were best described by using concentrations of dissolved organic carbon and reduction-oxidation conditions. Likewise, the variable fluxes of methylmercury from incubated cores were best described using dissolved organic carbon and reduction-oxidation conditions. Sinclair Inlet exhibited the classic Puget Sound biological cycle, with spring and autumn phytoplankton blooms resulting in depletion of nitrate, orthophosphate, and silicate in the surface water. Although variable in timing between 2008 and 2009, a strong corresponding seasonal trend of increased availability, incorporation, and bioaccumulation of methylmercury into the food web of Sinclair Inlet occurred during the early spring and summer growing season.

Washington↗