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At least 1,045 records · Page 58Linked to original sources
USGS2025

Leveraging artificial intelligence and machine learning to advance Chesapeake Bay research and management: A review of status, challenges, and opportunities

The Chesapeake Bay and its watershed (hereafter “Chesapeake Bay region”) have been the focus of extensive restoration efforts for several decades. These restoration efforts are guided by the Chesapeake Bay Watershed Agreement (Chesapeake Executive Council 2014) which outlines 10 goals and 31 measurable outcomes. The Chesapeake Bay is globally recognized as a model for coastal restoration due to long-term investments in monitoring, modeling, implementation and research by the Chesapeake Bay Program (CBP) partnership. These monitoring network spans tidal and non-tidal regions and provides data across multiple scales. Artificial intelligence (AI), particularly machine-learning (ML) and deep learning (DL), has emerged as a powerful tool for analyzing large, complex datasets. These techniques have gained widespread adoption across various disciplines, including ecology, hydrology, and environmental science. In the Bay context, AI/ML is increasingly being used to explore drivers of environmental change, analyze system dynamics, and predict conditions in areas with limited monitoring. The CBP partnership, particularly its Scientific and Technical Advisory Committee (STAC), has increasingly recognized the growing role of AI/ML in watershed and estuarine management. Recent Chesapeake Community Research Symposium sessions and initiatives such as the Chesapeake Global Collaboratory highlight increasing regional momentum to apply big data and AI/ML for environmental solutions. Together, these developments underscore the timely need to explore how AI/ML can help advance Chesapeake Bay restoration and management. This STAC workshop, titled “Leveraging Artificial Intelligence and Machine learning to Advance Chesapeake Bay Research and Management: A review of status, challenges, and opportunities,” was held from February 24-25, 2025, in Edgewater, Maryland to bring together over 50 federal, state, and academic scientists and partners to synthesize the current state of AI/ML applications and identify research gaps in Chesapeake Bay research and management. The workshop focused on three main objectives: 1. Summarize recent AI/ML applications and lessons learned in both tidal and nontidal areas of the Chesapeake Bay region. 2. Identify challenges and gaps in applying AI/ML approaches to Chesapeake Bay data. Such challenges and gaps may include data limitations, harmonization issues, ineffective communication of AI/ML insights, and a lack of coordination among research and management institutions. 3. Develop recommendations and identify opportunities for leveraging AI/ML to address issues across the Chesapeake Bay region. Key areas of focus may include generating new information to support watershed management, delivering AI/MLgenerated insights to managers in a clear and actionable way, and fostering greater collaboration among stakeholders within the CBP Partnership. Workshop participants engaged in science presentations and breakout sessions to develop recommendations for advancing the integration of AI/ML techniques into research and management across the Chesapeake Bay region. By synthesizing current applications, identifying challenges, and exploring new opportunities, the workshop has provided valuable insights and recommendations for better leveraging AI/ML approaches to support the success of Bay restoration efforts. Together, these recommendations provide a roadmap for enhancing data-driven, science-based decision making aligned with the goals and outcomes of the Chesapeake Bay Watershed Agreement.

Delaware, Maryland, Virginia↗
USGS1981

The distribution of uranium and thorium in granitic rocks of the basin and range province, Western United States

Some secondary uranium deposits are thought to have formed from uranium derived by the weathering of silicic igneous rocks such as granites, rhyolites, and tuffs. A regional geochemical survey was made to determine the distribution of uranium and thorium in granitic rocks of the Basin and Range province in order to evaluate the potential for secondary uranium occurrences in the area. The resulting geochemical maps of uranium, thorium, and the Th:U ratio may be useful in locating target areas for uranium exploration. The granites were sampled according to a five-level, nested, analysis-of-variance design, permitting estimates to be made of the variance due to differences between:(1) two-degree cells; (2) one-degree cells; (3) plutons; (4) samples; and (5) analyses. The cells are areas described in units of degrees of latitude and longitude. The results show that individual plutons tend to differ in uranium and thorium concentrations, but that each pluton tends to be relatively homogeneous. Only small amounts of variance occur at the two degree and the between-analyses levels. The three geochemical maps that were prepared are based on one-degree cell means. The reproducibility of the maps is U > Th ⪢ Th:U. These geochemical maps may be used in three methods of locating target areas for uranium exploration. The first method uses the concept that plutons containing the greatest amounts of uranium may supply the greatest amounts of uranium for the formation of secondary uranium occurrences. The second method is to examine areas with high thorium contents, because thorium and uranium are initially highly correlated but much uranium could be lost by weathering. The third method is to locate areas in which the plutons have particularly high Th:U ratios. Because uranium, but not thorium, is leached by chemical weathering, high Th:U ratios suggest a possible loss of uranium and possibly a greater potential for secondary uranium occurrences to be found in the area.

Arizona, California, Nevada, Utah↗
USGS1987

Geochemical studies in the Indian Pass and Picacho Peak Bureau of Land Management Wilderness study areas, imperial county, Southern California

The U.S. Geological Survey has conducted geochemical studies in the Indian Pass (CDCA-355), 124 km 2 , and Picacho Peak (CDCA-355A), 23 km 2 , Wilderness Study Areas (WSA's) as part of a program to evaluate the mineral resource potential of designated areas in the California Desert Conservation Area. These two WSA's are of particular interest because they lie within a region which has intermittently produced significant quantities of Au since the mid-1800's, and is currently the site of much exploration activity for additional Au resources. Within a 15-km radius of the WSA's, there is one actively producing gold mine, a major deposit which began production in 1986, and one recently announced discovery. In the reconnaissance geochemical surveys of the two WSA's - 177 μm (-80 mesh) stream sediments, heavy-mineral concentrates from stream sediments, and rocks were prepared and analyzed. Four areas of possible exploration interest were identified within the WSA's. The first area is characterized by anomalous W and Bi in nonmagnetic heavy-mineral concentrates, and is underlain primarily by the Mesozoic Orocopia Schist which has been intruded by monzogranite of Oligocene age. Alteration and mineralization appear to be localized near the intrusive contact. The mineralized rock at the surface contains secondary Cu and Fe minerals where the monzogranite intrudes the metabasite horizons of the Orocopia Schist and scheelite where the monzogranite intrudes marble within the Orocopia Schist.

Journal of Geochemical Exploration↗
USGS1993

Preliminary studies of the CHIM electrogeochemical method at the Kokomo Mine, Russell Gulch, Colorado

The CHIM electrogeochemical exploration technique was developed in the former Soviet Union about 20 years ago and is claimed to be effective in exploration for concealed mineral deposits that are not detectable by other geochemical or geophysical techniques. The method involves providing a high-voltage direct current to an anode and an array of special collector cathodes. Cations mobile in the electric field are collected at the cathodes and their concentrations determined. The U.S. Geological Survey started a study of the CHIM method by conducting tests over a precious- and base-metal-bearing quartz vein covered with 3 m of colluvial soil and weathered bedrock near the Kokomo Mine, Colorado. The tests show that the CHIM method gives better definition of the vein than conventional soil geochemistry based on a total-dissolution technique. The CHIM technique gives reproducible geochemical anomaly patterns, but the absolute concentrations depend on local site variability as well as temporal variations. Weak partial dissolutions of soils at the Kokomo Mine by an enzyme leach, a dilute acetic acid leach, and a dilute hydrochloric acid leach show results comparable to those from the CHIM method. This supports the idea that the CHIM technique is essentially a weak in-situ partial extraction involving only ions able to move in a weak electric field.

Journal of Geochemical Exploration↗
USGS2022

Tungsten skarn potential of the Yukon-Tanana Upland, eastern Alaska, USA—A mineral resource assessment

Tungsten (W) is used in a variety of industrial and technological applications and has been identified as a critical mineral for the United States, India, the European Union, and other countries. These countries rely on W imports mostly from China, which leaves them vulnerable to supply disruption. Consequently, the U.S. government has a current initiative to understand domestic resource potential. The eastern Alaska portion of the Yukon-Tanana Upland (YTU), is prospective for W skarn deposits, the major source of global W supply. The regional geology consists of juxtaposed Paleozoic lithotectonic packages that were reaccreted to North America in the Mesozoic . Multiple subsequent episodes of arc-related magmatism intruded the lithotectonic packages, accompanied by W skarn formation mostly associated with 100–90 Ma intrusions; major W skarn deposits in Canada are part of the same metallogenic event (e.g., Mactung, Cantung). In this paper, we present an assessment for undiscovered W skarn resources for parts of the lesser-explored western (Alaskan) portion of the YTU. We used GIS proximity analysis to map the intersection of pluton and carbonate-bearing rocks to define three permissive tracts for W skarn deposits. The permissive tracts were qualitatively assessed by mineral potential mapping using region-wide sediment geochemistry and mineral concentrate datasets. This analysis showed that much of the western YTU has high potential for undiscovered W skarn deposits, whereas the eastern and southern YTU had only isolated areas of medium to high potential. Historical production and the quality of the geochemistry data of the western YTU tract (ca. 9200 km 2 ) permitted a quantitative assessment of undiscovered W resources. Probabilistic estimates by a panel of 20 experts predicted a 70% chance of one to three undiscovered W skarn deposits in the western YTU tract. The rationale for favorability employed by the expert panel included favorable lithology, previous production, clustering of previously mined deposits, W placers in the area, lack of recent exploration, pan concentrates containing W minerals, and W geochemical anomalies. Estimates were combined with a global grade and tonnage model for W skarns in a Monte Carlo simulation and provided a median estimate of undiscovered resources of 94 kt WO 3 . If the undiscovered W skarn deposits are located close to infrastructure (e.g., near Fairbanks, or close to roads and/or power grid), application of an economic filter indicates that the median total economically recoverable WO 3 is 63 kt with a net present value (NPV) of $330 million USD (2008 dollars). Whereas if deposits are far from infrastructure, median recoverable WO 3 is only 30 kt and the NPV is $44 million. Our models for contained WO 3 resources and NPV estimates for the western YTU tract are considerably lower than the known resources in skarns in adjacent areas in Canada. Estimates for the western YTU are also lower than preliminary estimates for undiscovered W skarn deposits in areas of the western conterminous United States. We speculate that lower permeability and continuity of favorable carbonate rock horizons in the relatively higher-grade metamorphic country rocks in the Alaska portion of the YTU may explain some of the differences in prospectivity. More detailed geologic mapping, modern geochemistry, and geophysical surveys are needed to refine the resource potential of the whole YTU. Regardless, quantitative mineral resource assessment provides a useful tool for making first-order regional estimates of undiscovered resources, identifying target areas for new data acquisition, and guiding research on the fundamental controls of district-scale metallogenic endowments.

Alaska↗
USGS2023

Electromagnetic and magnetic imaging of the Stillwater Complex, Montana, USA

Modelling and analysis of helicopter electromagnetic data result in resistivity and susceptibility models and derivatives of magnetic data that characterise shallow parts of the Stillwater Complex, critical for aiding exploration and expansion of globally scarce critical and battery mineral resources that include platinum group elements, nickel, copper and chromium. The magnetic susceptibly models derived from the electromagnetic data and the tilt derivative of the magnetic data image layering, mafic dikes, banded iron formation, and serpentinised peridotite. Known areas with contact-type mineralisation are generally characterised by low resistivities and susceptibilities where the volume of mineralised rock is large and/or the depth is shallow. We use iso-cluster and edge detection analysis of both resistivities and susceptibilities to identify potential mineralisation in poorly characterised regions as well as faults. Low resistivity layers beneath large landslides reflect water saturated porous slip surfaces which can interfere with drilling. This uncommon approach of tightly linking the resistivity and susceptibility models and magnetic anomaly data to rock property, surficial geologic, drill hole and soil geochemistry data to image the geology in the upper ∼100 m, aids identification of prospective mineralised regions as well landslides and faults that can impact mineral exploration and local hazards.

Montana↗
USGS2014

Control on groundwater flow in a semiarid folded and faulted intermountain basin

The major processes controlling groundwater flow in intermountain basins are poorly understood, particularly in basins underlain by folded and faulted bedrock and under regionally realistic hydrogeologic heterogeneity. To explore the role of hydrogeologic heterogeneity and poorly constrained mountain hydrologic conditions on regional groundwater flow in contracted intermountain basins, a series of 3-D numerical groundwater flow models were developed using the South Park basin, Colorado, USA as a proxy. The models were used to identify the relative importance of different recharge processes to major aquifers, to estimate typical groundwater circulation depths, and to explore hydrogeologic communication between mountain and valley hydrogeologic landscapes. Modeling results show that mountain landscapes develop topographically controlled and predominantly local-scale to intermediate-scale flow systems. Permeability heterogeneity of the fold and fault belt and decreased topographic roughness led to permeability controlled flow systems in the valley. The structural position of major aquifers in the valley fold and fault belt was found to control the relative importance of different recharge mechanisms. Alternative mountain recharge model scenarios showed that higher mountain recharge rates led to higher mountain water table elevations and increasingly prominent local flow systems, primarily resulting in increased seepage within the mountain landscape and nonlinear increases in mountain block recharge to the valley. Valley aquifers were found to be relatively insensitive to changing mountain water tables, particularly in structurally isolated aquifers inside the fold and fault belt.

Colorado↗
USGS2014

Preslip and cascade processes initiating laboratory stick slip

Recent modeling studies have explored whether earthquakes begin with a large aseismic nucleation process or initiate dynamically from the rapid growth of a smaller instability in a “cascade-up” process. To explore such a case in the laboratory, we study the initiation of dynamic rupture (stick slip) of a smooth saw-cut fault in a 76mm diameter cylindrical granite laboratory sample at 40–120MPa confining pressure. We use a high dynamic range recording system to directly compare the seismic waves radiated during the stick-slip event to those radiated from tiny (M _6) discrete seismic events, commonly known as acoustic emissions (AEs), that occur in the seconds prior to each large stick slip. The seismic moments, focal mechanisms, locations, and timing of the AEs all contribute to our understanding of their mechanics and provide us with information about the stick-slip nucleation process. In a sequence of 10 stick slips, the first few microseconds of the signals recorded from stick-slip instabilities are nearly indistinguishable from those of premonitory AEs. In this sense, it appears that each stick slip begins as an AE event that rapidly (~20 μs) grows about 2 orders of magnitude in linear dimension and ruptures the entire 150mm length of the simulated fault. We also measure accelerating fault slip in the final seconds before stick slip. We estimate that this slip is at least 98% aseismic and that it both weakens the fault and produces AEs that will eventually cascade-up to initiate the larger dynamic rupture.

Journal of Geophysical Research B: Solid Earth↗
USGS2015

Predicting the resilience and recovery of aquatic systems: a framework for model evolution within environmental observatories

Maintaining the health of aquatic systems is an essential component of sustainable catchmentmanagement, however, degradation of water quality and aquatic habitat continues to challenge scientistsand policy-makers. To support management and restoration efforts aquatic system models are requiredthat are able to capture the often complex trajectories that these systems display in response to multiplestressors. This paper explores the abilities and limitations of current model approaches in meeting this chal-lenge, and outlines a strategy based on integration of flexible model libraries and data from observationnetworks, within a learning framework, as a means to improve the accuracy and scope of model predictions.The framework is comprised of a data assimilation component that utilizes diverse data streams from sensornetworks, and a second component whereby model structural evolution can occur once the model isassessed against theoretically relevant metrics of system function. Given the scale and transdisciplinarynature of the prediction challenge, network science initiatives are identified as a means to develop and inte-grate diverse model libraries and workflows, and to obtain consensus on diagnostic approaches to modelassessment that can guide model adaptation. We outline how such a framework can help us explore thetheory of how aquatic systems respond to change by bridging bottom-up and top-down lines of enquiry,and, in doing so, also advance the role of prediction in aquatic ecosystem management.

Water Resources Research↗
USGS2018

Drivers of variability in public‐supply water use across the contiguous United States

This study explores the relationship between municipal water use and an array of climate, economic, behavioral, and policy variables across the contiguous U.S. The relationship is explored using Bayesian‐hierarchical regression models for over 2,500 counties, 18 covariates, and three higher‐level grouping variables. Additionally, a second analysis is included for 83 cities where water price and water conservation policy information is available. A hierarchical model using the nine climate regions (product of National Oceanic and Atmospheric Administration) as the higher‐level groups results in the best out‐of‐sample performance, as estimated by the Widely Available Information Criterion, compared to counties grouped by urban continuum classification or primary economic activity. The regression coefficients indicate that the controls on water use are not uniform across the nation: e.g., counties in the Northeast and Northwest climate regions are more sensitive to social variables, whereas counties in the Southwest and East North Central climate regions are more sensitive to environmental variables. For the national city‐level model, it appears that arid cities with a high cost of living and relatively low water bills sell more water per customer, but as with the county‐level model, the effect of each variable depends heavily on where a city is located.

Water Resources Research↗
USGS2017

A pesticide paradox: Fungicides indirectly increase fungal infections

There are many examples where the use of chemicals have had profound unintended consequences, such as fertilizers reducing crop yields (paradox of enrichment) and insecticides increasing insect pests (by reducing natural biocontrol). Recently, the application of agrochemicals, such as agricultural disinfectants and fungicides, has been explored as an approach to curb the pathogenic fungus, Batrachochytrium dendrobatidis ( Bd ), which is associated with worldwide amphibian declines. However, the long-term, net effects of early-life exposure to these chemicals on amphibian disease risk have not been thoroughly investigated. Using a combination of laboratory experiments and analysis of data from the literature, we explored the effects of fungicide exposure on Bd infections in two frog species. Extremely low concentrations of the fungicides azoxystrobin, chlorothalonil, and mancozeb were directly toxic to Bd in culture. However, estimated environmental concentrations of the fungicides did not reduce Bd on Cuban tree frog ( Osteopilus septentrionalis ) tadpoles exposed simultaneously to any of these fungicides and Bd , and fungicide exposure actually increased Bd -induced mortality. Additionally, exposure to any of these fungicides as tadpoles resulted in higher Bd abundance and greater Bd -induced mortality when challenged with Bd post-metamorphosis, an average of 71 d after their last fungicide exposure. Analysis of data from the literature revealed that previous exposure to the fungicide itraconazole, which is commonly used to clear Bd infections, made the critically endangered booroolong frog ( Litoria booroolongensis ) more susceptible to Bd . Finally, a field survey revealed that Bd prevalence was positively associated with concentrations of fungicides in ponds. Although fungicides show promise for controlling Bd , these results suggest that, if fungicides do not completely eliminate Bd or if Bd recolonizes, exposure to fungicides has the potential to do more harm than good. To ensure that fungicide applications have the intended consequence of curbing amphibian declines, researchers must identify which fungicides do not compromise the pathogen resistance mechanisms of amphibians.

Ecological Applications↗
USGS2018

Host-pathogen metapopulation dynamics suggest high elevation refugia for boreal toads

Emerging infectious diseases are an increasingly common threat to wildlife. Chytridiomycosis, caused by the fungal pathogen Batrachochytrium dendrobatidis ( Bd ), is an emerging infectious disease that has been linked to amphibian declines around the world. Few studies exist that explore amphibian- Bd dynamics at the landscape scale, limiting our ability to identify which factors are associated with variation in population susceptibility and to develop effective in situ disease management. Declines of boreal toads ( Anaxyrus boreas boreas ) in the Southern Rocky Mountains are largely attributed to chytridiomycosis but variation exists in local extinction of boreal toads across this metapopulation. Using a large-scale historic dataset, we explored several potential factors influencing disease dynamics in the boreal toad- Bd system: geographic isolation of populations, amphibian community richness, elevational differences, and habitat permanence. We found evidence that boreal toad extinction risk was lowest at high elevations where temperatures may be sub-optimal for Bd growth and where small boreal toad populations may be below the threshold needed for efficient pathogen transmission. In addition, boreal toads were more likely to recolonize high elevation sites after local extinction, again suggesting that high elevations may provide refuge from disease for boreal toads. We illustrate a modeling framework that will be useful to natural resource managers striving to make decisions in amphibian- Bd systems. Our data suggest that in the southern Rocky Mountains high elevation sites should be prioritized for conservation initiatives like reintroductions.

Ecological Applications↗
USGS2019

Drought-mediated extinction of an arid-land amphibian: Insights from a spatially explicit dynamic occupancy model

Understanding how natural and anthropogenic processes affect population dynamics of species with patchy distributions is critical to predicting their responses to environmental changes. Despite considerable evidence that demographic rates and dispersal patterns vary temporally in response to an array of biotic and abiotic processes, few applications of metapopulation theory have sought to explore factors that explain spatio-temporal variation in extinction or colonization rates. To facilitate exploring these factors, we extended a spatially explicit model of metapopulation dynamics to create a framework that requires only binary presence-absence data, makes few assumptions about the dispersal process, and accounts for imperfect detection. We apply this framework to 22 years of biannual survey data for lowland leopard frogs, Lithobates yavapaiensis, an amphibian that inhabits arid stream systems in the southwestern U.S. and northern Mexico. Our results highlight the importance of accounting for factors that govern temporal variation in transition probabilities, as both extinction and colonization rates varied with hydrologic conditions. Specifically, local extinctions were more frequent during drought periods, particularly at sites without reliable surface water. Colonization rates increased when larval and dispersal periods were wetter than normal, which increased the probability that potential emigrants metamorphosed and reached neighboring sites. Extirpation of frogs from one watershed during a period of severe drought demonstrated the influence of site-level features, as frogs persisted only in areas where most sites held water consistently and where the amount of sediment deposited from high-elevation wildfires was low. Application of our model provided novel insights into how climate-related processes affected the distribution and population dynamics of an arid-land amphibian. The approach we describe has application to a wide array of species that inhabit patchy environments, can improve our understanding of factors that govern metapopulation dynamics, and can inform strategies for conservation of imperiled species.

Arizona↗
USGS2021

A more representative community of ecologists

Ecologists play a crucial role in providing solutions to the challenges facing the world. For most of the history of the field, however, the science of ecology has been pursued by white men, and increasingly, by white women. This lack of diversity is untenable today, not only because it is socially unjust, but also because solving environmental problems requires diversity. Ecology as a science is an extremely rewarding and fun career choice for many, but how can the field recruit a more diverse workforce to do this important and gratifying work? Attracting and retaining future ecologists of color is the focus of this Forum. How do young people choose a career in ecology and environmental sciences? For many ecologists, environmental scientists and managers, and future natural resource professionals, an early field experience provides a crucial introduction and gateway. A sojourn at a field station, an extended field trip, or field expedition has introduced many of today’s professionals to their fields, but at the same time, a growing literature documents problematic behavior, discrimination, and other forms of harassment that have been far too frequently reported, and little attention has been given to conscious or implicit exclusion of students from diverse backgrounds. In their lead article, Bowser and Cid, two leading researchers and long-time champions of diversity in ecology, build on experience in long-running programs as well as the literature to diagnose challenges facing diverse youth, and present approaches to encourage, rather than discourage, further engagement. They describe affirmative and creative measures that foster a sense of inclusion and community among young scholars; this sense of belonging and empowerment allows many to advance to studies and careers in ecology and environmental science. In the subsequent six papers, authors explore topics either responding to, or inspired by, the lead paper. They explore alternatives to a field experience as a gateway to a career in ecology or environmental sciences through, for example, data science or the social sciences. Other comment papers describe challenges faced in the next phases of an academic career, barriers faced by specific cultural groups and the approaches, challenges, and outcomes of programs aiming to increase the diversity of the environmental STEM workforce. All responses sound a clarion call for change to hear and value different voices and perspectives to be heard and valued. These include (1) structural and cultural change to our institutions and reward structures; (2) developing and nurturing personal relationships among students and their mentors, within teams and in internships; (3) making entry to ecology inviting and making advancement in ecology free from systemic barriers; and (4) broadening our vision of ecology, and the ways we learn about the world’s ecosystems. The Ecological Society of America, the home for Ecological Applications , is committed to the diversity, equity and inclusion needed to tackle environmental challenges in unity (https://www.esa.org/esablog/2020/09/24/time-for-action-esa-initiates-a-diversity-equity-inclusion-and-justice-deij-task-force/). The world needs all available talent and perspectives to meet environmental challenges today. Ecological Applications has long published occasional papers on the profession of ecology and never ones more important or timely than these. The editorial team is proud to provide an outlet for the voices of our field, in all its current, if inadequate, diversity and honored to host the passionate and committed views of our authors.

Ecological Applications↗
USGS2018

Genetic analyses reveal cryptic introgression in secretive marsh bird populations

Hybridization is common in bird populations but can be challenging for management, especially if one of the two parent species is of greater conservation concern than the other. King rails (Rallus elegans) and clapper rails (R. crepitans) are two marsh bird species with similar morphologies, behaviors, and overlapping distributions. The two species are found along a salinity gradient with the king rail in freshwater marshes and the clapper in estuarine marshes. However, this separation is not absolute; they are occasionally sympatric, and there are reports of interbreeding. In Virginia, USA, both king and clapper rails are identified by the state as Species of Greater Conservation Need, although clappers are thought to be more abundant and king rails have a higher priority ranking. We used a mitochondrial DNA marker and 13 diagnostic nuclear single nucleotide polymorphisms (SNPs) to identify species, classify the degree of introgression, and explore the evolutionary history of introgression in two putative clapper rail focal populations along a salinity gradient in coastal Virginia. Genetic analyses revealed cryptic introgression with site-specific rates of admixture. We identified a pattern of introgression where clapper rail alleles predominate in brackish marshes. These results suggest clapper rails may be displacing king rails in Virginia coastal waterways, most likely as a result of ecological selection. As introgression can result in various outcomes from outbreeding depression to local adaptation, continued monitoring of these populations would allow further exploration of hybrid fitness and inform conservation management.

Georgia, New Jersey, North Carolina, Rhode Island,↗
USGS2025

Multiple dimensions define thresholds for population resilience of the eastern oyster, Crassostrea virginica

A species' distribution depends on its tolerance to environmental conditions. These conditions are defined by a minimum, maximum, and optimal ranges of single and combined factors. Forays into environmental conditions outside the minimum or maximum tolerance of a species (i.e., thresholds) are predicted to have large effects on a species' population and may help predict population resilience in the face of changing conditions. Here, we explore ecological thresholds for an important fisheries species and ecosystem engineer, Crassostrea virginica (eastern oyster). In coastal Louisiana, extreme freshwater inputs from rivers and precipitation events impact estuarine salinity, which is a key driver of oyster population dynamics. Using daily salinity and monthly oyster abundance monitoring data across Louisiana estuaries, we explore low salinity exposure threshold levels for oysters. Two statistical approaches were applied, with each model highlighting a different operational definition of a threshold: random forest models identified a threshold as an abrupt change in the oyster abundance- salinity relationship, while Bayesian models identified an increased probability of oyster abundance dropping below a critical threshold, defined here as less than 50% of the 5-year mean. All model results indicate oysters in coastal Louisiana experience low salinity exposure thresholds, defined as the number of consecutive summer days of salinity levels less than 5. However, actual number of days and salinity threshold differed by statistical approach, oyster life stage, and estuary highlighting the multiple dimensions defining ecological thresholds. While thresholds are considered important benchmarks to inform management and assess population or ecosystem vulnerability, our results reveal the need to carefully relate threshold definition to management goals and to acknowledge that thresholds may be highly context dependent.

Louisiana↗
USGS2019

Spatially-structured statistical network models for landscape genetics

A basic understanding of how the landscape impedes, or creates resistance to, the dispersal of organisms and hence gene flow is paramount for successful conservation science and management. Spatially structured ecological networks are often used to represent spatial landscape‐genetic relationships, where nodes represent individuals or populations and resistance to movement is represented using non‐binary edge weights. Weights are typically assigned or estimated by the user, rather than observed, and validating such weights is challenging. We provide a synthesis of current methods used to estimate edge weights and an overview of common model types, stressing the advantages and disadvantages of each approach and their ability to model landscape‐genetic data. We further explore a set of spatial‐statistical methods that provide ecologists with alternative approaches for modeling spatially explicit processes that may affect genetic structure. This includes an overview of spatial autoregressive models, with a particular focus on how correlation and partial correlation are used to represent neighborhood structure with the inverse of the covariance matrix (i.e., precision matrix). We then demonstrate how to model resistance by specifying an appropriate statistical model on the nodes, conditioned on the edge weights, through the precision matrix. This integration of network ecology and spatial statistics provides a practical analytical framework for landscape‐genetic studies. The results can be used to make statistical inferences about the relative importance of individual landscape characteristics, such as the vegetative cover, hillslope, or the presence of roads or rivers, on gene flow. In addition, the R code we include allows readers to explore landscape‐genetic structure in their own datasets, which will potentially provide new insights into the evolutionary processes that generated ecological networks, as well as valuable information about the optimal characteristics of conservation corridors.

Ecological Monographs↗
USGS2024

Increasing soil water drought in response to altered precipitation timing across the western United States

Recent trends of rising temperatures and longer droughts between precipitation events are impacting water-limited dryland ecosystems in the western United States. Although ecosystem drought response depends directly on soil moisture, trends in soil moisture (e.g., edaphic drought) remain more poorly explored than precipitation (e.g., meteorological drought), representing an important knowledge gap. Here, we applied the SOILWAT2 ecosystem water balance model to quantify long-term trends of soil moisture and edaphic drought using observed daily weather from 1976 to 2019 at 337 stations across the western United States. We assessed edaphic drought for different plant community types (grass dominated vs. shrub dominated), and explored variations with soil depth and texture. The duration of the longest edaphic drought in a given year increased by 1.5 ± 0.2 days/decade for grassy and 1.7 ± 0.2 days/decade for woody vegetation. Importantly, these trends in edaphic drought were consistent with but greater in magnitude compared with meteorological drought indicating more severe water stress for both plants and ecosystems. The correlation between meteorological drought and edaphic drought was greater under woody vegetation (0.45) compared with grass (0.34) and greater at surface soil depths (0–20 cm; 0.46) compared with the deeper soil (20–100 cm; 0.34). Among soil textures, the correlation between meteorological and edaphic drought was highest on sandy soils and lowest on finer textured silty soils. Using the biogeographic domains (eight western NEON domains), we found that the Pacific Northwest, Pacific Southwest, and Desert Southwest exhibited the strongest increases in edaphic drought through time, but lower correlation between meteorological and edaphic droughts. These findings characterize strong but variable connections between edaphic drought and meteorological drought across the western United States and demonstrate the critical influences of vegetation type, soil depth, and soil properties in mediating the magnitude and spatial distribution of edaphic drought.

western United States↗