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Land change monitoring, assessment, and projection (LCMAP) revolutionizes land cover and land change research

When nature and humanity change Earth’s landscapes - through flood or fire, public policy, natural resources management, or economic development - the results are often dramatic and lasting. Wildfires can reshape ecosystems. Hurricanes with names like Sandy or Katrina will howl for days while altering the landscape for years. One growing season in the evolution of drought-resistant genetics can transform semiarid landscapes into farm fields. In the past, valuable land cover maps created for understanding the effects of those events - whether changes in wildlife habitat, water-quality impacts, or the role land use and land cover play in affecting weather and climate - came out at best every 5 to 7 years. Those high quality, high resolution maps were good, but users always craved more: even higher quality data, additional land cover and land change variables, more detailed legends, and most importantly, more frequent land change information. Now a bold new initiative called Land Change Monitoring, Assessment, and Projection (LCMAP) promises to fulfill that demand. Developed at the U.S. Geological Survey (USGS) Earth Resources Observation and Science (EROS) Center in Sioux Falls, South Dakota, LCMAP provides definitive, timely information on how, why, and where the planet is changing. LCMAP’s continuous monitoring process can detect changes as they happen every day that Landsat satellites acquire clear observations. The result will be to place near real-time information in the hands of land and resource managers who need to understand the effects these changes have on landscapes.

General Information Product↗

Survival and migration behavior of juvenile coho salmon in the Klamath River relative to discharge at Iron Gate Dam, Northern California, 2007

This report describes a study of survival and migration behavior of juvenile coho salmon in the Klamath River relative to discharge at Iron Gate Dam in 2006. This was the second year of a multi-year study with the goal of determining the effects of discharge at Iron Gate Dam on survival of juvenile coho salmon downstream. The study was a collaborative effort among U.S. Geological Survey (USGS), U.S. Fish and Wildlife Service (USFWS), and the Yurok and Karuk Tribal Fisheries Departments. The goals of the study included: 1) estimating the survival of wild and hatchery juvenile coho salmon in the Klamath River downstream from Iron Gate Dam, 2) determining the effects of discharge and other covariates on their survival and migration, and 3) determining if fish from Iron Gate Hatchery could be used as surrogates for the limited source of wild fish. The major findings of the study in 2006 include: River discharges during the 2006 study period (4 April through 21 July 2006) were among the greatest on record. Average daily discharge at Iron Gate Dam was 3,956 cubic feet per second (cfs) and ranged from 997 to 10,300 cfs. Discharge at Iron Gate Dam was positively correlated with discharges of tributaries downstream due to the above average water year and frequent occurrence of spill at Iron Gate Dam. Average daily discharge near the estuary was 25,789 cfs and ranged from 4,740 to 50,600 cfs. This study was based on hatchery fish taken directly from a tank at Iron Gate Hatchery and wild fish captured in a rotary trap on the Shasta River. Releases of both groups began on 4 April when the catch of wild fish in California Department of Fish and Game‟s Shasta River rotary trap increased, but trap catches varied throughout the study period, resulting in differences in release dates of hatchery and wild fish. A total of 211 hatchery fish were released from 4 April through 26 May. Wild and hatchery fish released on a regular schedule between 25 April and 16 May 2006 were used in comparisons of the survival and migration of hatchery (N = 120) and wild (N = 162) fish. Additional analyses were performed using hatchery fish from all dates. The data and models did not support clear differences between survivals of hatchery and wild fish released on common dates, so estimates of reach survivals were made after pooling these data. Estimates of survival were lowest in the Iron Gate Dam to Scott River reach (0.813) and greatest in the Salmon River to Trinity River reach (1.000). The overall survival from river kilometer 309 (Iron Gate Hatchery) to river kilometer 33 was 0.653 (95% CI 0.578 to 0.729). Estimates of survival based on all hatchery fish releases were similar to those from release dates common to hatchery and wild fish and are similar to those in other river systems over similar distances. The migrations of hatchery and wild fish were different in the uppermost sections of the study area and were similar thereafter. A lag between release and migration, primarily upstream from the Scott River (river kilometer 234), was present in hatchery fish to a greater extent than in wild fish, resulting in differences in migration rates. Fish from both origins spent more time between release and the Scott River than in individual reaches downstream, and this was the only reach in which travel times of fish increased as discharge decreased. The travel times of hatchery and wild fish between sites were statistically similar downstream from Indian Creek (river kilometer 178). There were differences and similarities in the analyses of the effects of covariates on survivals of hatchery and wild fish. The models of covariate effects based on hatchery and wild fish released on common dates indicated effects on wild fish survival that were not supported in data from hatchery fish. However, when the entire suite of hatchery fish releases were used the results of the analyses were similar to those based on wild fish. In both instances the effects of temperature and release date were primarily in the first reach, the reach fish of both origins spent most of their time within. The signs of the effects of these covariates differed among the fish origins (negative for wild and positive for hatchery fish), presumably due to differences in their migrations in the first reach. The effects of dam discharge on survivals of hatchery and wild fish were generally similar (positive relation), and the effects on hatchery, and to a lesser extent wild, fish were largely downstream from the Scott River. This is likely due to the prolonged residence of the naïve hatchery fish, and to a lesser extent, migrant wild fish between release and the Scott River. Inasmuch as the differences between hatchery and wild fish we observed were likely those of migrants vs. non-migrants, the use of hatchery fish captured as they are migrating downstream, rather than those directly from hatchery tanks (i.e., naïve), may improve similarities between hatchery and wild fish in future studies. The data and models used in 2006 do not support the use of naïve hatchery fish as surrogates for migrant wild fish in determining the effects of discharge on survival upstream from the Scott River. This conclusion is based on the different effects of covariates in this reach that were likely attributable to the differences in hatchery and wild migration behaviors in this reach. The results of this second year of research provide insight to the migration and survival of hatchery and wild juvenile coho salmon in the Klamath River, but the results are from a single unusual water year. The results may be different during other water year types. The current information supports a positive relation between discharge at Iron Gate Dam and survival of juvenile coho salmon downstream, but additional data should be used to refine this relation. Discharge at the dam was correlated with discharges of Klamath River tributaries during this above average water year. The data and models from the 2006 study provide the first estimates of survival of these fish in the Klamath River and can be used with data from years with other water year types to examine the effects of discharge on survival. This will only be possible over a period of years in which the correlations between discharge and other factors, such as water temperature and date, are diminished. An experimental approach in which discharges are varied at Iron Gate Dam is the most direct method to determine if survivals are affected by discharge, but this may not be feasible given the limited storage capacity of the project.

California↗

Search for volatiles on icy satellites: I. Europa

New reflectance spectra have been obtained for both the leading and trailing sides of Europa, using the Cooled Grating Array Spectrometer (CGAS) of the NASA Infrared Telescope Facility (IRTF). The spectra are of higher precision than any yet obtained. Spectra of Europa's trailing side (central meridian longitude ≈300°) obtained in 1985 show two weak absorptions near 2.2 and 2.3 μm. Both of these features as well as others are seen in spectra obtained by R. N. Clark, R. B. Singer, P. D. Owensby, and F.P. Fanale (1980a, Bull. Amer. Astron. Soc. 12, 713–714) at similar central meridian longitude. Data obtained with an improved detector array in 1986, however, do not show the absorptions seen in the 1980 and 1985 spectra. It is not clear why the newest data do not show the apparent absorptions seen in previous years, but the suggestion is that either the 1980 and 1985 data are spurious or that the material responsible for the weak absorptions is no longer detectable. Analysis of the 1980 and 1985 data did not reveal any obvious source of systematic error capable of introducing spurious features, but we are skeptical of any explanation that cites transient deposition, movement, and/or destruction of material on Europa's trailing side to account for the nondetection of the features in the 1986 data. If the weak absorptions seen in the 1980 and 1985 data are real, they can be interpreted as indicating the transient spectroscopic presence of a molecular component on Europa's trailing side different from the water ice that is known to be the dominant surface constituent. Further monitoring is required to determine if the apparent absorptions are real.

Icarus↗

Extreme events trigger terrestrial and marine ecosystem collapses: A tale of two regions

We outline the multiple, cross-scale, and complex consequences of terrestrial and marine ecosystem heatwaves in two regions on opposite sides of the planet: the southwestern USA and southwestern Australia, both encompassing Global Biodiversity Hotspots, and where ecosystem collapses or features of it have occurred in the past two decades. We highlight ecosystem shifts that have clearly demonstrated a substantial change from a baseline state over time, although not necessarily across their entire distribution, with evidence of collapse at local scales. Responses to temperature extremes, such as heatwaves, encompass processes at all scales, including population level (e.g. altered demography such as survival, recruitment, and fecundity, together resulting in structural changes), community level (e.g. species compositional shifts), and ecosystem level (e.g. carbon loss), as well as physical properties altered by vegetation loss (e.g. microclimate, fire behaviour on land). These changes impact all trophic levels with foundational species losses (such as seagrasses, kelp, and trees), flowing through to vertebrates (such as sea turtles, penguins, and cockatoos). Where extensive collapse has occurred, shifts in microclimate could affect important biosphere-to-atmosphere feedbacks including fluxes of energy, carbon, and water. Such extensive changes usually do not occur in isolation and frequently interact with other disturbance processes such as fire, storms, pathogen and pest outbreaks, and anthropogenic stressors. Interactions may alter the likelihood, extent, or severity of subsequent disturbances (linked disturbances) as well as condition the ecological response and recovery (compound disturbances). In addition, if ecosystem collapse is extensive enough (e.g. tree die-off), those changes also can impact climate and ecosystems elsewhere via ecoclimate teleconnections. Increasing rates of climatic extremes will drive a host of direct and indirect feedbacks certain to produce large-scale shifts in ecological functioning at unprecedented rates. Understanding how, why, and where these shifts will occur will be critical for effective ecosystem management and climate change mitigation.

Book chapter↗

Preliminary assessment of bioengineered fringing shoreline reefs in Grand Isle and Breton Sound, Louisiana

Restoration of three-dimensional shell habitats in coastal Louisiana presents a valuable and potentially self-sustaining approach to providing shoreline protection and critical nekton habitat and may contribute to water quality maintenance. The use of what has been called “living shorelines” is particularly promising because in addition to the hypothesized shoreline protection services, it is predicted that, if built and located in viable sites, these living shorelines may ultimately contribute to water quality maintenance through filtration of bivalves and may enhance nekton habitat. This approach, however, has not been tested extensively in different shallow water estuarine settings; understanding under what conditions a living shoreline must have to support a sustainable oyster population, and where these reefs may provide valuable shoreline protection, is key to ensuring that this approach provides an effective tool for coastal restoration. This project gathered preliminary data on the sustainability and shoreline stabilization of three large bioengineered fringing reefs located in Grand Isle, Lake Eloi, and Lake Fortuna, Louisiana. We collected preconstruction and postconstruction physiochemical and biological data by using a before-after-control-impact approach to evaluate the effectiveness of these living shoreline structures on reducing marsh erosion, enabling reef sustainability, and providing other ecosystem benefits. Although this project was originally designed to compare reef performance and impacts across three different locations over 2 years, delays in construction because of the Deepwater Horizon oil spill resulted in reefs being built from 12 to 18 months later than anticipated. As a result, monitoring postconstruction was severely limited. One reef, Grand Isle, was completed in March 2011 and monitored up to 18 months postcreation, whereas Lake Eloi and Lake Fortuna reefs were not completed until January 2012, and only 8 months of postconstruction data are available. Data for the latter two sites thus reflect only the 2012 spring/summer seasons, which were further impacted by a direct hit by Hurricane Isaac in August 2012, which resulted in shoreward movement of approximately 14 percent of the bioengineered structures at Lake Fortuna. Given the shortened monitoring timeframe and significant differences in construction schedules, we were not able to provide a full postconstruction assessment of the sites or a full comparison of site success based on local site characteristics. Because many of the impacts that were identified for monitoring reflect long-term processes, results and data presented should be interpreted cautiously. Sustainable oyster reefs require recruitment, growth, and survival at a rate that keeps pace with mortality and shell disarticulation. Although one site failed to recruit (establishment plus survival > 50 millimeters [mm]) over two spawning seasons, two sites only had 6 months postconstruction data available for assessment. Although there are good data on the requirements for oyster growth, there is limited explicit information on the site-specific water quality, hydrodynamic, and biological interaction effects that may determine successful reef establishment. Furthermore, interannual variability can significantly affect reef establishment, and our shortened timeframe of sampling (less than one spawning season for two of the reefs; two spawning seasons for one reef), combined with a lack of prerestoration monitoring data, limit our ability to draw any conclusions about long-term reef sustainability. Bioengineered reefs are thought to provide some benefits to shoreline stabilization through their structure by immediately attenuating wave energies and directly reducing erosion rates at shorelines sheltered by the reefs but also by increasing sediment deposition behind the reefs. Preliminary data indicate differences in reef impact by site; given the short timeframe of postconstruction data at two of the sites, and differences in reef placement between sites, however, it is difficult to draw any conclusions. Longer-term data collection and further analyses comparing reef placement; local wind, wave energy, sediment transport processes; and local bathymetry may help in parameterizing sites where fringing reefs may be most beneficial for shoreline protection. In addition to basic reef sustainability and shoreline stabilization, we measured both water quality parameters and nekton abundances around the newly created reefs and adjacent reference sites. Within the timeframe of monitoring, no effect of reefs on water quality was detected at any site. Given that water quality effects are hypothesized to result from the filtration activities of bivalves, and reefs either failed to recruit (settlement plus survival to > 50 mm) or successfully recruited but only had a couple months of growth prior to this report, it was not expected that an effect would be detectable in this timeframe. Nekton such as blue crab, gulf menhaden, and anchovies were found to be more abundant on the reefs; larger, more transient species were not found to be affected by reef presence. Future work examining smaller organisms and juveniles, including more explicit studies examining why and how these organisms preferentially use oyster reefs, would be useful in the design of other bioengineered reefs and help in understanding the role of the reefs in supporting the nekton community. It is clear from the initial work that ensuring correct site selection by better understanding what local site factors influence oyster populations is key to establishing successful living shoreline reefs. Ultimately, the success of the reefs in providing any ecosystem service relies on their ability to build a viable oyster population that is self-sustaining over the long term. As many of the ecosystem processes hypothesized to result from reefs develop over the long term (4–6 years), some level of monitoring over the next few years is highly recommended in order to accurately assess the long term viability of the reefs, their provision of ecosystem services, and to provide better guidance for future projects.

Louisiana↗

Atlantic Margin Coring Project 1976: Preliminary Report on Shipboard and Some Laboratory Geotechnical data

This report presents reduced shipboard geotechnical data collected during the 1976 Atlantic Margin Coring Project; results of laboratory tests of specific gravity, water content, bulk density, and Atterberg limits; and sedimentation-compression e log p curves showing consolidation. A description of the procedures used at sea and in the laboratory and a short preliminary summary of the shipboard results also is included. The involvement of Marine Geotechnical Laboratory (MGL), Lehigh University, personnel in the 1976 Atlantic Margin Coring Project can be divided into two phases. In Phase One, the Lehigh nuclear-transmission densitometer was rebuilt to process cores at sea more rapidly than previously had been done in the laboratory, the equipment was assembled and tested aboard the Glomar Conception, and at-sea geotechnical measurements were made during the duration of the cruise. Data sheets were prepared for both unopened core sections (Appendix III) and split-core samples (Appendix IV). Completed data forms are on file at the MGL and at the Geological Survey in Woods Hole. Phase Two included reduction of the shipboard data, testing of all geotechnical samples taken from cores split aboard the ship, and certain other analytical work ashore utilizing the geotechnical measurements. Water content and weight/volume bulk density tests were performed at the MGL. Specific gravity and Atterberg limit tests and certain calculations were performed by Geological Survey personnel at the Corpus Christi, Texas, laboratory. During Phase One, 37 unopened, 1.5-m-long core sections were selected by Lehigh personnel for subsequent static and dynamic triaxial and consol­idation testing ashore. The disposition of these cores is controlled by Geological Survey Project personnel; they are not further discussed in this report. A depth convention has been adopted in this report for the convenience of labeling core sections and analyzing the data. Each 9.2-m-long (30 ft) core liner had a maximum penetration depth referenced to the water-sediment interface; these data are given in Hathaway, et al. (1976). Each 9.2-m-long core liner was cut into six or fewer sections, each 1.5 m (5 ft) in length, aboard the ship. To the maximum penetration depth, 0.2 m was subtracted to obtain the depth at the bottom of the first 1.5 m section above the core catcher. To obtain values at the bottom of the remaining 1.5 m sections, an additional 1.5 m was added for each section. The depth of the bottom of each core section was used for all values obtained using the nuclear densitometer. Tests within core sections and samples collected from core sections were assigned depths based on the location of the test or sample within the core section. It should be clearly recognized that all depths within a 9.2-m-long core are estimates of the true depth, which cannot be uniquely calculated because of the uncertainty of the relationship of sediment contained within the core liner to true in situ depths. This report is considered to be preliminary because the author has not had access to the final lithologic logs or paleontological results, upon which a more accurate description of geotechnical results could be based. It would be inappropriate to comment on geological hazards until this information is made available.

Atlantic Ocean↗

Grain-size segregation and levee formation in geophysical mass flows

Data from large-scale debris-flow experiments are combined with modeling of particle-size segregation to explain the formation of lateral levees enriched in coarse grains. The experimental flows consisted of 10 m 3 of water-saturated sand and gravel, which traveled ∼80 m down a steeply inclined flume before forming an elongated leveed deposit 10 m long on a nearly horizontal runout surface. We measured the surface velocity field and observed the sequence of deposition by seeding tracers onto the flow surface and tracking them in video footage. Levees formed by progressive downslope accretion approximately 3.5 m behind the flow front, which advanced steadily at ∼2 m s −1 during most of the runout. Segregation was measured by placing ∼600 coarse tracer pebbles on the bed, which, when entrained into the flow, segregated upwards at ∼6–7.5 cm s −1 . When excavated from the deposit these were distributed in a horseshoe-shaped pattern that became increasingly elevated closer to the deposit termination. Although there was clear evidence for inverse grading during the flow, transect sampling revealed that the resulting leveed deposit was strongly graded laterally, with only weak vertical grading. We construct an empirical, three-dimensional velocity field resembling the experimental observations, and use this with a particle-size segregation model to predict the segregation and transport of material through the flow. We infer that coarse material segregates to the flow surface and is transported to the flow front by shear. Within the flow head, coarse material is overridden, then recirculates in spiral trajectories due to size-segregation, before being advected to the flow edges and deposited to form coarse-particle-enriched levees.

Journal of Geophysical Research↗

The Missoula and Bonneville floods—A review of ice-age megafloods in the Columbia River basin

The Channeled Scabland of eastern Washington State, USA, brought megafloods to the scientific forefront. A 30,000-km2 landscape of coulees and cataracts carved into the region’s loess-covered basalt attests to overwhelming volumes of energetic water. The scarred landscape, garnished by huge boulder bars and far-travelled ice-rafted erratics, spurred J Harlen Bretz’s vigorously disputed flood hypothesis in the 1920s. First known as the Spokane flood, it was rebranded the Missoula flood once understood that the water came from glacial Lake Missoula, formed when the Purcell Trench lobe of the last-glacial Cordilleran ice sheet dammed the Clark Fork valley in northwestern Idaho with ice a kilometer thick. Bretz’s flood evidence in the once-remote Channeled Scabland, widely seen and elaborated by the 1950s, eventually swayed consensus for cataclysmic flooding. Missoula flood questions then turned to some that continue today: how many? when? how big? what routes? what processes? The Missoula floods passed through eastern Washington by a multitude of valleys, coulees and scabland tracts, some contemporaneously, some sequentially. Which routings and their timing depended on the positions of various lobes of the multi-pronged Cordilleran ice sheet and the erosional development of the channels themselves. The first floods mostly followed the big bend of Columbia valley looping through north-central Washington. But the south-advancing Okanogan ice lobe soon blocked that path, forming long-lasting glacial Lake Columbia in the impounded Columbia valley. Missoula floods into this lake were diverted south out of the Columbia valley and into eastern Washington coulees and scabland tracts. At least four floods entered Moses Coulee, but then as the Okanogan lobe advanced over and blocked the head of that coulee, more eastern paths took the water, including Grand Coulee and the Telford-Crab-Creek and Cheney-Palouse scabland tracts. Flood routing also depended on the erosion of the coulees. At some point, headward erosion of upper Grand Coulee lowered the divide saddle between the west-running Columbia valley and the deep and wide Grand Coulee heading southwest. Still uncertain is when this happened and the consequences with respect to the stage and extent of glacial Lake Columbia and to flood access to the other, higher, flood routes. Downstream, all flood routes converged onto Pasco Basin, flowed through Wallula Gap and the Columbia River Gorge into the Pacific Ocean, following submarine canyons and depositing sediment layers on abyssal plains. Stratigraphic studies indicate dozens—likely more than a hundred—separate Missoula floods during the last glacial period. Over the length of the flood route, backwater areas and depositional basins preserve multiple flood beds, many of which are separated by signs of time, including volcanic ash layers and soil development in subaerial environments; and varve-like beds and pelagic mud layers in lacustrine and marine settings. Evidence also comes from the glacial Lake Missoula basin, where stratigraphy indicates dozens of filling and emptying cycles. Varve counts in conjunction of radiocarbon dating and paleomagnetic secular variation show the repeated filling-and-release cycles of glacial Lake Missoula had intervals possibly as long as 100 years early in the lake’s history but diminished to just one or two years for the last few floods. This behavior accords with jökulhlaup-style floods released by subglacial drainage from a self-dumping ice-dammed lake. But not yet clear is whether such a mechanism applies to all the floods or if some emptied more cataclysmically as hypothesized by some. Radiocarbon dating of sparse organic materials remains key to defining flood chronology but has been lately bolstered by analyses of terrestrial cosmogenic nuclides and optically stimulated luminescence. Varve counts and paleomagnetic secular variation studies help to define durations and intervals represented by sequences of flood beds. The ~16 ka Mount St. Helens Set S tephra is commonly interbedded within flood deposits, enabling correlation of deposits among sites. Tephra from the 13.7–13.4 ka eruption of Glacier Peak overlies all glacial Lake Missoula and Missoula flood deposits, defining an end time. Overall conclusions are that glacial Lake Missoula was extant and producing floods for at least 3–4 ky during 20–14 ka. At least ~75 floods preceded Mount St Helens Set S, followed by 30 or more after the tephra fall. Most floods entered glacial Lake Columbia, impounded by the Okanogan lobe, for 2–5 ky between about 18.5 and 15 ka. Glacial Lake Columbia outlived Lake Missoula by >200–400 yr but may have been born later since at least one flood came down the Columbia valley before the Okanogan ice lobe blocked the Columbia valley at 18.5–18 ka. The maximum extent of the Okanogan and Purcell Trench lobes, many Missoula floods, substantial erosion of upper Grand Coulee, and the widespread tephra falls from Mount St. Helens eruptions all happened about 17–15 ka. People, in the area since 16.6–15.3 ka, almost certainly witnessed the last of the Missoula floods and later large floods from other ice-dammed lakes in the Columbia River basin. Quantitative flow analyses give peak discharge estimates and support understanding of erosional and depositional processes. The first flow assessments were simple cross-section calculations but recent assessments employ two-dimensional hydrodynamic models. The general finding is that emplacement of the maximum stage evidence requires about 20 million m3/s near the Lake Missoula outlet and about 5–15 million m3/s through Wallula Gap and downstream in the Columbia River Gorge. These hydraulic analyses raise still-unresolved questions regarding canyon erosion and possible additional water sources. The large Pleistocene Bonneville flood entered the Columbia River system from the southeast from pluvial Lake Bonneville, the Pleistocene predecessor to Great Salt Lake in the eastern Great Basin. During the last glacial, the lake basin filled, covering >50,000 km2 with 10,400 km3 of water before reaching its maximum possible stage governed by Red Rock Pass, the lowest divide separating the basin from the Snake River basin to the north. The overtopping lake rapidly incised 108–125 m into the Red Rock Pass outlet, spilling half of its total lake volume. G.K. Gilbert described the essential sequence in the 1870s, but the flood was mostly forgotten until the late 1950s when Harold Malde linked the spectacular scabland topography and bouldery “melon gravel” on the Snake River Plain to the Lake Bonneville overflow. The Bonneville flood appears to have been a singular event at about 18 ka. No evidence of multiple or pre-last-glacial spillovers has yet been found. Its total volume was about twice that of a maximum Lake Missoula flood yet its peak discharge was ~1 million m3/s, less than a tenth of the largest Missoula floods. Its comparatively simple flow path and much steadier flow make the Bonneville flood ideal for new studies of erosional and depositional processes. At least two floods seem to have passed down the Columbia valley after the last of the Missoula floods, including a large flood about ~14 ka likely from cataclysmic demise of the thinning Okanogan ice lobe dam impounding glacial Lake Columbia. Floods from earlier glacial ages left scant yet clear evidence in the Channeled Scabland and Columbia valley. But their source, timing, and magnitudes are little understood. Some deposits are paleomagnetically reversed, thus older than ~800 ka. Last-glacial floods and perhaps older ones affected the Snake River Plain, some likely sourced in lakes dammed by alpine glaciers in central Idaho.

Idaho, Oregon, Washington↗

Faunal and stable isotopic analyses of benthic foraminifera from the Southeast Seep on Kimki Ridge offshore southern California, USA

We investigated the benthic foraminiferal faunal and stable carbon and oxygen isotopic composition of a 15-cm push core (NA075-092b) obtained on a Telepresence-Enabled cruise to the Southeast Seep on Kimki Ridge offshore southern California. The seep core was taken at a depth of 973 m in the vicinity of a Beggiatoa bacterial mat and vesicomyid clams (Calyptogena) and compared to previously published data of living assemblages from ~ 714 m, four reference cores obtained at ~ 1030 m, and another one at 739 m. All of the reference sites are also from the Inner Continental Borderland but with no evidence of methane seepage. No endemic species were found at the seep site and most of the taxa recovered there have been reported previously from other seep or low oxygen environments. Q- and R-mode cluster analyses clearly illustrated differences in the faunal assemblages o f the seep and non-seep sites. The living assemblage at Southeast Seep was characterized by abundant Takayanagia delicata, Cassidulina translucens, and Spiroplectammina biformis , whereas the non-seep San Pedro Basin reference assemblage was comprised primarily of Chilostomella oolina and Globobulimina pacifica . Density and species richness we re lower at the seep site compared to the non-seep site, reflecting the harsher living conditions there. The dead assemblage at the seep site was dominated by Gyroidina turgida compared to Cassidulina translucens at the ~ 1030 m non-seep site and Cassidulina translucens, Pseudoparrella pacifica, and Takayanagia delicata at the 739 m non-seep site. Density was three times lower at Southeast Seep than at the non-seep sites of comparable water depth but species richness was ~ 30% higher. Stable carbon isotopic values were considerably depleted in the seep samples compared to the non-seep samples, with a progression from lightest to heaviest average δ 13 C values evident at the seep site reflecting microhabitat preference and vital effect: the deep infaunal species of Globobulimina , the shallow infaunal species Uvigerina peregrina , the epifaunal species Cibicidoides wuellerstorfi , and the shallow infaunal but aragonite-shelled species Hoeglundina elegans . The δ 13 C values downcore among each benthic species indicates ongoing fluid seepage through at least the last 3800 cal yr B.P. at Southeast Seep. Besides the continual local seepage, evidence from δ 13 C values of planktic foraminifera in the seep core suggest two pulses of methane (at 3000 and 3700 cal yr B.P.) were released that were large enough to influence much of the water column. Paired benthic and planktic foraminiferal stable oxygen isotope records provide evidence that there were no paleoenvironmental changes such as increased bottom-water temperature or changes in oxygen isotopic composition of bottom and pore waters during this 3800-year record to induce the methane releases. Instead, Southeast Seep appears to be the result of local faulting providing pathways for fluid to flow to the seafloor at a fault stepover or transpressional bend in the regional strike-slip system.

California↗

Getting to the root of restoration: Considering root traits for improved restoration outcomes under drought and competition

A foundational goal of trait‐based ecology, including trait‐based restoration, is to link specific traits to community assembly, biodiversity, and ecosystem function. Despite a growing awareness of the importance of belowground traits for ecological processes, a synthesis of how to root traits can inform restoration of terrestrial plant communities is lacking. We reviewed and summarized existing literature focused on root traits in relation to plant performance measures (i.e. survival, establishment, productivity) in the contexts of drought and competition (including invasion). Root traits related to belowground resource acquisition (e.g. high specific root length, deep roots) are frequently related to drought avoidance (i.e. a plant strategy based on optimizing water uptake to maintain function), whereas studies relating root traits to drought tolerance (i.e. a plant strategy that allows plants to withstand low hydration) remain limited. More studies have linked root traits to plant competitive effects (i.e. the influence of a plant has on neighbors) than to competitive responses (i.e. a plant's ability to resist the effects of neighbors). Because plants with acquisitive traits decrease resources to the detriment of neighbors, root traits associated with rapid resource acquisition (e.g. high specific root length) may be important for understanding competitive effects. Albeit more limited, research suggests root traits associated with resource conservation or stress tolerance (e.g. high root tissue density, high root diameter) may elucidate mechanisms related to competitive responses. Re‐vegetation outcomes may be improved by considering root traits, but only if clear links are made between traits and plant performance in varied contexts.

Restoration Ecology↗

Argillization by descending acid at Steamboat Springs, Nevada

Steamboat Springs, Nevada, an area of present-day hot springs, clearly illustrates the genetic dependence of some kaolin deposits on hot-spring activity. Andesite, granodiorite and arkosic sediments are locally altered at the land surface to siliceous residues consisting of primary quartz and anatase, plus opal from primary silicates. These siliceous residues commonly exhibit the textural and structural features of their unaltered equivalents. Beneath the siliceous residues, kaolin and alunite replace primary silicates and fill open spaces, forming a blanketlike deposit. Beneath the kaolin-alunite zone, montmorillonite, commonly accompanied by pyrite, replaces the primary silicates. On the ground surface, the same alteration mineral zones can be traced outward from the siliceous residue; however, hematite rather than pyrite accompanies montmorillonite. Chemical analysis indicates that sulfuric acid is the active altering agent. The acid forms from hydrogen sulfide that exsolves from deep thermal water, rises above the water table and is oxidized by sulfur-oxidizing bacteria living near the ground surface. This acid dissolves in precipitation or condensed water vapor and percolates downward destroying most of the primary minerals producing a siliceous residue. Coincidence of the water table with the downward transition from siliceous residue to kaolin-alunite signifies decreasing hydrogen metasomatism because of dilution of descending acid by ground water. In hot-spring areas, beds of siliceous sinter deposited at the surface by hypogene thermal water look, superficially, like areas of surficial acid alteration. Features diagnostic of a surficial alteration are the relict rock structures of a siliceous residue and a kaolin-alunite zone immediately beneath.

Nevada↗

Alligators and crocodiles as indicators for restoration of Everglades ecosystems

Alligators and crocodiles integrate biological impacts of hydrological operations, affecting them at all life stages through three key aspects of Everglades ecology: (1) food webs, (2) diversity and productivity, and (3) freshwater flow. Responses of crocodilians are directly related to suitability of environmental conditions and hydrologic change. Correlations between biological responses and environmental conditions contribute to an understanding of species' status and trends over time. Positive or negative trends of crocodilian populations relative to hydrologic changes permit assessment of positive or negative trends in restoration. The crocodilian indicator uses monitoring parameters (performance measures) that have been shown to be both effective and efficient in tracking trends. The alligator component uses relative density (reported as an encounter rate), body condition, and occupancy rates of alligator holes; the crocodile component uses juvenile growth and hatchling survival. We hypothesize that these parameters are correlated with hydrologic conditions including depth, duration, timing, spatial extent and water quality. Salinity is a critical parameter in estuarine habitats. Assessments of parameters defined for crocodilian performance measures support these hypotheses. Alligators and crocodiles are the charismatic megafauna of the Everglades. They are both keystone and flagship species to which the public can relate. In addition, the parameters used to track trends are easy to understand. They provide answers to the following questions: How has the number of alligators or crocodiles changed? Are the animals fatter or thinner than they should be? Are the animals in the places (in terms of habitat and geography) where they should be? As surely as there is no other Everglades, no other single species defines the Everglades as does the American alligator. The Everglades is the only place in the world where both alligators and crocodiles exist. Crocodilians clearly respond to changes in hydrologic parameters of management interest. These relationships are easy to communicate and mean something to managers, decision makers, and the public. Having crocodilians on the list of system-wide, general indicators provides us with one of the most powerful tools we have to communicate progress of ecosystem restoration in Greater Everglades ecosystems to diverse audiences.

Florida↗

Trends in late Maastrichtian calcareous nannofossil distribution patterns, Western North Atlantic margin

First and last occurrences of several Maastrichtian calcareous nannofossil species are shown to be diachronous across paleodepth and paleoenvironment using the graphic correlation method. Calcareous nannofossil assemblages examined from eleven cores from a deep- to shallow-water transect along the eastern United States Atlantic margin document that the first occurrence of Micula murus (Martini 1961) Bukry 1973 is diachronous, appearing 2.0 million years earlier in open ocean sites than in shallow marine sites. The first occurrence (FO) of Lithraphidites kennethii Perch-Nielsen 1984 is also nonsynchronous, appearing in the deep ocean before its FO in neritic waters. The last occurrence (LO) of L. praequadratus Roth 1978 is diachronous across paleodepth, going locally extinct first in deeper water. The LO of Watznaueria bybelliae Self-Trail 1999 is also diachronous, going locally extinct first in shallow-water settings. Ceratolithoides amplector Burnett 1997, C. pricei Burnett 1997, C. self-trailiae Burnett 1997, C. ultimus Burnett 1997, Cribrocorona gallica (Stradner 1963) Perch-Nielsen 1973. Micula praemurus (Bukry 1973) Stradner and Steinmetz 1984, Pseudomicula quadratus Perch-Nielsen et al. 1978, and Semihololithus spp. are present consistently in common to frequent abundances in ODP holes 1050C and 1052E on the Blake Nose, but they are rare or absent from neritic sections in Coastal Plain cores. It is apparent that these species flourished in an open ocean setting, suggesting that differences in assemblage abundance and diversity between deep ocean and nearshore areas were controlled by paleoceanographic factors. These species are not used for biostratigraphy, but may be useful indicators of open ocean conditions. The line of correlation (LOC) for nine Coastal Plain cores clearly defines the Cretaceous-Tertiary (K/T) boundary unconformity at the top of the Maastrichtian section (Peedee Formation) and the Campanian-Maastrichtian (C/M) unconformity at the base of the Maastrichtian section (Peedee/Donoho Creek formational contact). The K/T boundary unconformity is undulatory in nature; updip Maastrichtian sections have been stripped to a greater depth than the downdip sections. The uppermost Campanian, all of the lowermost Maastrichtian, and the basal upper Maastrichtian sediments are missing from the study area.

Micropaleontology↗

Effects of high salinity wastewater discharges on unionid mussels in the Allegheny River, Pennsylvania

We examined the effect of high salinity wastewater (brine) from oil and natural gas drilling on freshwater mussels in the Allegheny River, Pennsylvania, during 2012. Mussel cages (N = 5 per site) were deployed at two sites upstream and four sites downstream of a brine treatment facility on the Allegheny River. Each cage contained 20 juvenile northern riffleshell mussels Epioblasma torulosa rangiana). Continuous specific conductance and temperature data were recorded by water quality probes deployed at each site. To measure the amount of mixing throughout the entire study area, specific conductance surveys were completed two times during low-flow conditions along transects from bank to bank that targeted upstream (reference) reaches, a municipal wastewater treatment plant discharge upstream of the brine-facility discharge, the brine facility, and downstream reaches. Specific conductance data indicated that high specific conductance water from the brine facility (4,000–12,000 µS/cm; mean 7,846) compared to the reference reach (103–188 µS/cm; mean 151) is carried along the left descending bank of the river and that dilution of the discharge via mixing does not occur until 0.5 mi (805 m) downstream. Juvenile northern riffleshell mussel survival was severely impaired within the high specific conductance zone (2 and 34% at and downstream of the brine facility, respectively) and at the municipal wastewater treatment plant (21%) compared to background (84%). We surveyed native mussels (family Unionidae) at 10 transects: 3 upstream, 3 within, and 4 downstream of the high specific conductance zone. Unionid mussel abundance and diversity were lower for all transects within and downstream of the high conductivity zone compared to upstream. The results of this study clearly demonstrate in situ toxicity to juvenile northern riffleshell mussels, a federally endangered species, and to the native unionid mussel assemblage located downstream of a brine discharge to the Allegheny River.

Pennsylvania↗

Evaluation of larval lamprey survival following salvage: A pilot study

Larval lampreys ( Entosphenus tridentatus and Lampetra spp.) are vulnerable to anthropogenic water-level fluctuations that can dewater their habitat. Dewatering events occur regularly in the Columbia River Basin for operation and management of hydropower facilities, seasonal or maintenance closures of irrigation diversions, and in-water construction projects, including for habitat restoration. Salvage efforts which can be initiated before, during, and after dewatering events are resource-intensive and are conducted based on the assumption that salvage will reduce lamprey mortality. This pilot study was the first formal assessment of the efficacy of salvage efforts, evaluating the survival and performance of larval lamprey following various salvage techniques. Lampreys were salvaged during dewatering events at three field sites under variable environmental conditions (summer and fall of 2020) and then held in the laboratory for 60 days to monitor survival, growth, and burrowing performance. Four salvage treatments were defined to represent combinations of typical salvage techniques and stressors, including multiple passes of standard electrofishing (SEF), lamprey-specific electrofishing (LEF), and modified lamprey-specific electrofishing (MLEF; probes in direct contact with dewatered, but moist substrate) as well as extended exposure on the surface and walking on sediment where lampreys were burrowed. Control groups did not experience dewatering and were collected using LEF in areas away from treatment groups. Treatments were designed to increase in intensity, from treatment 1 (walking and exposure) to treatment 4 (multiple passes of SEF, LEF and MLEF). Study sites included an earthen hatchery rearing pond (North Toutle Hatchery) dewatered in July, and two irrigation diversions (Wapato and Sunnyside diversions on Yakima River) dewatered at the end of the irrigation season in October. Treatments were executed inside circular 1 m2 enclosures that were randomly positioned in habitats expected to be dewatered. A solid, weighted ring at the bottom of the enclosure penetrated the sediment and netting extended through the water column to a floating upper ring. We deployed eight enclosures per treatment at each test site, executed the four salvage treatments, collected lamprey from within each enclosure and transported them to the laboratory, along with the control groups, for the 60-day holding period. Burrowing performance was tested in sand 1 day after the field effort and in field-collected sediment 30 days after the field effort. Mortality was documented and lamprey were measured at 1, 30, and 60 days in the laboratory and fish weights were used to calculate standard growth rate (SGR) for each site and treatment group. We collected 328 larval lampreys at our three test sites, including 71 controls and 257 larvae exposed to dewatering and salvage treatments. Overall mortality for the 60-day laboratory holding period was 11.9%. Most mortality occurred within 1-day after treatment (51.3%) and there was limited mortality past 30 days (2.6%). At the North Toutle Hatchery, we observed substantial mortality during the field tests in July, both inside and outside of our test enclosures. Mortality within our test enclosures ranged from 96.7 to 98.8% for treatment 1, 45.9 to 52.2% for treatment 3 and 6.7 to 7.1% for treatment 4. The elevated mortality at this site and logistical challenges with the execution of treatments 1 and 2 resulted in few fish (5 total for treatment 1) or no fish (treatment 2) available for testing in the laboratory. Only one larval lamprey died during field tests at the Wapato and Sunnyside irrigation diversions during testing in October. The single mortality was in treatment 1 (11.1%) and no mortalities were observed outside of the test enclosures. We used logistic regression to estimate survival of larval lampreys transported to the laboratory and held for 24 h. The Wapato and Sunnyside field sites were pooled for logistic regression and the North Toutle Hatchery site was analyzed separately due to dramatically different environmental conditions. We found that treatment 1 reduced larval survival more than any other treatment during both the summer and fall dewatering events. Trends among survival for treatments 2-4 were less clear. The unique stressor included in the first treatment, but not in other treatments, was a 2-hour exposure period during which larvae were left lying on the surface of the sediment. Treatment 1 also experienced a walking action (foot pressure on the surface of the exposed sediment). The walking action was also included in treatment 4, both before and after dewatering, along with multiple passes of various electrofishing techniques, as this treatment was designed to be a worst-case scenario for lamprey salvage. Despite what appeared to be significant stressors associated with treatment 4, the logistic regression for survival up to 24 hours in the laboratory showed that the odds of surviving treatment 4 were 16 times higher than the odds of surviving treatment 1 at Wapato and Sunnyside (combined). The same comparison at the North Toutle Hatchery showed the odds were 226 times higher for lamprey to survive treatment 4 compared to treatment 1. Lamprey from all study sites initiated burrowing activity with median times less than 10.5 seconds in both sand (day 1) and field-collected sediment (day 30). The fastest burrowing start times were less than 1.0 second and the slowest was 3.2 minutes. Lamprey behavioral responses during burrowing ability tests were variable. Some lampreys immediately moved from the release location near the surface of the water toward the sediment and began burrowing while others swam around the aquarium near the surface of the water before exploring the sediment to select a burrowing location. The median time to complete burrowing for all treatment groups and sample periods ranged from 9.9 to 48.1 seconds. No significant differences in SGR were detected between treatment and control groups at any test site. Laboratory water temperatures for the North Toutle Hatchery study groups were maintained at 15°C, giving lamprey a growth advantage compared to the Wapato and Sunnyside groups which were maintained at 10℃. SGR for lamprey collected at the North Toutle Hatchery ranged from 0.83% weight gain/day for controls to 2.04%/day for treatment 3. SGR at Wapato ranged from 0.27 to 0.67%/day and from 0.60 to 0.90 %/day at Sunnyside. Overall, SGR was consistently lower at every site for the controls compared to any of the treatment groups, although none of the differences were significant. The variability at some sites in initial lamprey size, combined with inherent variability in growth rates, limited our ability to make conclusions about how different salvage treatments influenced SGR. Treatment 1 stood out among the salvage treatments at all study sites. In this treatment, lampreys exposed on the surface of the sediment, awaiting salvage, were vulnerable to reduced survival, even under mild environmental conditions. The risk of mortality was greatest for the summer dewatering event at the North Toutle Hatchery. The remaining treatments, even with multiple passes of various electrofishing techniques, did not generally have large negative impacts on lamprey during our tests. Lamprey survival rates for these treatments were relatively high, especially at the fall dewatering sites when environmental conditions were mild. Thus, salvage efforts, despite being resource intensive, likely have limited negative outcomes for larval lamprey and make substantial contributions to lamprey conservation efforts.

Report↗

Chemical transfers along slowly eroding catenas developed on granitic cratons in southern Africa

A catena is a series of distinct but co-evolving soils arrayed along a slope. On low-slope, slowly eroding catenas the redistribution of mass occurs predominantly as plasma, the dissolved and suspended constituents in soil water. We applied mass balance methods to track how redistribution via plasma contributed to physical and geochemical differentiation of nine slowly eroding (~ 5 mm ky − 1 ) granitic catenas. The catenas were arrayed in a 3 × 3 climate by relief matrix and located in Kruger National Park, South Africa. Most of the catenas contained at least one illuviated soil profile that had undergone more volumetric expansion and less mass loss, and these soils were located in the lower halves of the slopes. By comparison, the majority of slope positions were eluviated. Soils from the wetter climates (550 and 730 mm precipitation yr − 1 ) generally had undergone greater collapse and lost more mass, while soils in the drier climate (470 mm yr − 1 ) had undergone expansion and lost less mass. Effects of differences in catena relief were less clear. Within each climate zone, soil horizon mass loss and strain were correlated, as were losses of most major elements, illustrating the predominant influence of primary mineral weathering. Nevertheless, mass loss and volumetric collapse did not become extreme because of the skeleton of resistant primary mineral grains inherited from the granite. Colloidal clay redistribution, as traced by the ratio of Ti to Zr in soil, suggested clay losses via suspension from catena eluvial zones. Thus illuviation of colloidal clays into downslope soils may be crucial to catena development by restricting subsurface flow there. Our analysis provides quantitative support for the conceptual understanding of catenas in cratonic landscapes and provides an endmember reference point in understanding the development of slowly eroding soil landscapes.

Geoderma↗

Effects of larval-juvenile treatment with perchlorate and co-treatment with thyroxine on zebrafish sex ratios

The objective of this study was to determine the effect of larval-juvenile exposure to perchlorate, a thyroid hormone synthesis inhibitor, on the establishment of gonadal sex ratios in zebrafish. Zebrafish were exposed to untreated water or water containing perchlorate at 100 or 250 ppm for a period of 30 days starting at 3 days postfertilization (dpf). Recovery treatments consisted of a combination of perchlorate and exogenous thyroxine (T4; 10 nM). Thyroid histology was assessed at the end of the treatment period (33 dpf), and gonadal histology and sex ratios were determined in fish that were allowed an additional 10-day period of growth in untreated water. As expected, exposure to perchlorate caused changes in thyroid histology consistent with hypothyroidism and these effects were reversed by co-treatment with exogenous T4. Perchlorate did not affect fish survival but co-treatment with T4 induced higher mortality. However, relative to the corresponding perchlorate concentration, co-treatment with T4 caused increased mortality only at a perchlorate concentration of 100 ppm. Perchlorate alone or in the presence of T4 suppressed body length at 43 dpf relative to control values. Perchlorate exposure skewed the sex ratio toward female in a concentration-dependent manner, and co-treatment with T4 not only blocked the feminizing effect of perchlorate but also overcompensated by skewing the sex ratio towards male. Moreover, co-treatment with T4 advanced the onset of spermatogenesis in males. There was no clear association between sex ratios and larval survival or growth. We conclude that endogenous thyroid hormone plays a role in the establishment of gonadal sex phenotype during early development in zebrafish. ?? 2006 Elsevier Inc. All rights reserved.

General and Comparative Endocrinology↗

Relation of water quality to land use in the drainage basins of six tributaries to the lower Delaware River, New Jersey, 2002-07

Concentrations and loads of water-quality constituents in six streams in the lower Delaware River Basin of New Jersey were determined in a multi-year study conducted by the U.S. Geological Survey, in cooperation with the New Jersey Department of Environmental Protection. Two streams receive water from relatively undeveloped basins, two from largely agricultural basins, and two from heavily urbanized basins. Each stream was monitored during eight storms and at least eight times during base flow during 2002-07. Sampling was conducted during base flow before each storm, when stage was first observed to rise, and several times during the rising limb of the hydrographs. Agricultural and urban land use has resulted in statistically significant increases in loads of nitrogen and phosphorus species relative to loads in undeveloped basins. For example, during the growing season, median storm flow concentrations of total nitrogen in the two streams in agricultural areas were 6,290 and 1,760 mg/L, compared to 988 and 823 mg/L for streams in urban areas, and 719 and 333 mg/L in undeveloped areas. Although nutrient concentrations and loads were clearly related to land useurban, agricultural, and undeveloped within the drainage basins, other basin characteristics were found to be important. Residual nutrients entrapped in lake sediments from streams that received effluent from recently removed sewage-treatment plants are hypothesized to be the cause of extremely high levels of nutrient loads to one urban stream, whereas another urban stream with similar land-use percentages (but without the legacy of sewage-treatment plants) had much lower levels of nutrients. One of the two agricultural streams studied had higher nutrient loads than the other, especially for total phosphorous and organic nitrogen. This difference appears to be related to the presence (or absence) of livestock (cattle).

Scientific Investigations Report↗