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Airborne bacteria in Earth’s lower stratosphere resemble taxa detected in the troposphere: results from a new NASA aircraft bioaerosol collector (ABC)
Airborne microorganisms in the upper troposphere and lower stratosphere remain elusive due to a lack of reliable sample collection systems. To address this problem, we designed, installed, and flight-validated a novel Aircraft Bioaerosol Collector (ABC) for NASA's C-20A that can make collections for microbiological research investigations up to altitudes of 13.7 km. Herein we report results from the first set of science flights—four consecutive missions flown over the United States (US) from 30 October to 2 November, 2017. To ascertain how the concentration of airborne bacteria changed across the tropopause, we collected air during aircraft Ascent / Descent (0.3 to 11 km), as well as sustained Cruise altitudes in the lower stratosphere (~12 km). Bioaerosols were captured on DNA-treated gelatinous filters inside a cascade air sampler, then analyzed with molecular and culture-based characterization. Several viable bacterial isolates were recovered from flight altitudes, including Bacillus sp., Micrococcus sp., Arthrobacter sp., and Staphylococcus sp. from Cruise samples and Brachybacterium sp. from Ascent/Descent samples. Using 16S V4 sequencing methods for a culture-independent analysis of bacteria, the average number of total OTUs was 305 for Cruise samples and 276 for Ascent/Descent samples. Some taxa were more abundant in the flight samples than the ground samples, including OTUs from families Lachnospiraceae, Ruminococcaceae and Erysipelotrichaceae as well as the following genera: Clostridium, Mogibacterium, Corynebacterium, Bacteroides, Prevotella, Pseudomonas , and Parabacteroides . Surprisingly, our results revealed a homogeneous distribution of bacteria in the atmosphere up to 12 km. The observation could be due to atmospheric conditions producing similar background aerosols across the western US, as suggested by modeled back trajectories and satellite measurements. However, the influence of aircraft-associated bacterial contaminants could not be fully eliminated and that background signal was reported throughout our dataset. Considering the tremendous engineering challenge of collecting biomass at extreme altitudes where contamination from flight hardware remains an ever-present issue, we note the utility of using the stratosphere as a proving ground for planned life detection missions across the solar system.
The scientific bases for preservation of the Mariana crow
The Panel recently released the report and recommendations resulting from its work over the last six months. Although primarily focused on the Mariana Crow, the report highlights that this is a matter potentially far more serious than the preservation of the crow on Guam and Rota. The report includes major sections dealing with the need to intensify research and control activities on the Brown Tree Snake both on Guam and in all appropriate areas to which the snake could spread if uncontained and on the population biology and behavior of the Mariana Crow on Guam and Rota.
An overview of raptor biology and conservation in Latin America
Prior to the last decade, biological studies of raptorial birds in Latin America were, with a few exceptions, nonexistent. For many species all that was known was the general range and habitat type. While the logistical and political challenges are still present, the last few years has seen the opening of a door to what will almost surely be a flood of scientific investigations. From over 40,000 ground miles traveled in 16 countries, field contact with over two thirds of the raptor species, and interviews with conservation officers in 10 nations, I will report on some raptor concentration areas, identify topics for future research, and generalize on raptor conservation issues. I will also briefly mention some recent biological studies and touch briefly on the challenges awaiting the biologist who tries his or her hand at reaping the rewards that are present in abundance for those who engage in raptor studies in Latin America.
Wind River watershed restoration: Annual report of U.S. Geological Survey activities November 2010 – October 2011
This report summarizes work completed by U.S. Geological Survey’s Columbia River Research Laboratory (USGS-CRRL) in the Wind River subbasin during November 2010 through October 2011 under Bonneville Power Administration (BPA) contract 40481. The primary focus of USGS activities during this contract was on tagging of juvenile steelhead Oncorhynchus mykiss with Passive Integrated Transponder (PIT) tags, and working toward a network of instream PIT tag detection systems to monitor movements and life histories of these fish.
Core descriptions, core photographs, physical property logs and surface textural data of sediment cores recovered from the continental shelf of the Monterey Bay National Marine Sanctuary during the research cruises M-1-95-MB, P-2-95-MB, and P-1-97-MB
In response to the 1992 creation of the Monterey Bay National Marine Sanctuary (MBNMS), the United States Geological Survey (USGS) initiated a multiyear investigation of the Sanctuary continental margin. As part of the investigative effort, this report summarizes the shipboard procedures, subsequent laboratory analyses, and data results from three seafloor sampling cruises conducted on the continental shelf between Monterey peninsula, CA and San Francisco, CA. The cruises were conducted in 1995 aboard the NOAA Ship McArthur (M-1-95-MB) and in 1995 and 1997 aboard the R/V Point Sur (P-2-95-MB and P-1-97-MB). Scientists and representatives from the Environmental Protection Agency (EPA), the National Oceanic and Atmospheric Administration (NOAA), the California Department of Fish and Game (CDFG), the University of California Santa Cruz (UCSC), and the San Jose State University Moss Landing Marine Laboratory (SJSU-MLML) supported the research effort. In this report we present sediment descriptions, sediment textural data, physical property logs, station metadata, and photographs of subcores from a total of three hundred and eighty four sample stations. At these sites either a box corer, MultiCore™r, grab sampler or a combination of these sampling devices were used to collect the sea floor sediments. The report is presented in an interactive web-based format with each mapped core station linked to the corresponding description and photo, and to a spreadsheet of surface texture and other sampling data.
A Methodology to Assess the National and Regional Impacts of U.S. Wind Energy Development on Birds and Bats
This scientific investigations report describes an effort by the U.S. Geological Survey (USGS) that used research, monitoring data, and modeling to develop a methodology to assess both the current and future population-level consequences of wind energy development on species of birds and bats that are present in the United States during any part of their life cycle. The methodology is currently applicable to birds and bats, focuses primarily on the effects of collisions with turbines, and can be applied to any species that breeds in, migrates through, or otherwise uses any part of the United States. The methodology assesses species at the national and regional scales and identifies those species potentially in need of more detailed study, as well as those species that are likely at low risk from wind energy development. This approach is fundamentally different from existing methods focusing on impacts at individual facilities. This report supersedes USGS Scientific Investigations Report 2015–5066 by the same authors, which described a preliminary version of the methodology. Following reviews of the preliminary methodology by a panel of external experts, public comments, and additional internal review, the methodology was revised and finalized. The three components of the refined methodology described in this new report rely on publicly available fatality information, population estimates, species range maps, turbine location data, biological characteristics of species, and population models. First, three metrics are combined to determine direct and indirect relative effects from wind energy facilities to generate a list of species scores. Second, a generic population model estimates the expected change in population trend caused by the additive mortality from collisions with wind turbines. Third, the methodology combines an estimate of observed fatalities and an estimate of potential biological removal to assess the possibility of a decrease in population size. The latter two components are quantitative. In a test case, the methodology was used to analyze data for six bird species and three bat species. Components of the methodology are based on simplifying assumptions and require information that, for many species, may be sparse or unreliable or may require further study. These assumptions should be carefully considered when using outputs from the methodology. Increases in the quality of data for fatalities from collisions with wind turbines, species distributions, abundance, and demography will likely improve results for uses of the methodology. The methodology’s design identifies and prioritizes a subset of the bird and bat species that may experience population-level impacts from collisions with wind turbines, both currently and from future wind energy development in the United States. Results of an assessment using this methodology could focus future research to improve our understanding of those impacts and to guide avoidance and minimization strategies. In addition, this methodology can be used to identify species for more intensive demographic modeling or to highlight those species that may not require any additional research because effects of wind energy development on their populations are projected to be small. The effects of wind energy facilities on nine unidentified species used in the test case described in this report have not been assessed. Their data were simply used to show the application of the methodology to real-world data and the types of outputs it would produce.
Updates to CE-QUAL-W2 models for select U.S. Army Corps of Engineers reservoirs in the Willamette Valley Project and an inter-reservoir reach of the Middle Fork Willamette River, northwestern Oregon
Mechanistic models capable of simulating hydrodynamics and water temperature in rivers and reservoirs are valuable tools for investigating thermal conditions and their relation to dam operations and streamflow in river basins where upstream water storage and management decisions have an important influence on river reaches with threatened fish populations. In particular, models allow managers to investigate how new, untried operations or hypothetical structures might influence streamflow and temperature conditions downstream. CE-QUAL-W2 is a two-dimensional (laterally averaged) hydrodynamic water-quality model that has previously been used to investigate the downstream effects of dam operations and other anthropogenic influences on stream temperature in the Willamette River Basin in northwestern Oregon, a region with two populations of fish species designated as threatened under the Endangered Species Act. By linking CE-QUAL-W2 river models to models of upstream, large Willamette Valley Project dams and reservoirs, these models can be used to investigate how dam operations at individual dams can influence streamflow and thermal conditions in downstream river reaches as an integrated system. Integrated model simulations that include the large dams and reservoirs linked to downstream river reaches can help managers develop a better understanding of tradeoffs associated with potential retrofits or operational changes across the multipurpose dams in the Willamette Valley Project, the effect of dam management on downstream tributaries and the Willamette River, and the resulting potential effect on threatened fish populations and habitat conditions. River models capable of simulating river corridors downstream from U.S. Army Corps of Engineers dams were previously updated and integrated to simulate conditions that occurred from March through October of 2011 (a cool and wet year), 2015 (a hot and dry year), and 2016 (a moderately hot and dry year) using CE-QUAL-W2 version 4.2. These river models encompass the following: Coast Fork Willamette and Middle Fork Willamette Rivers, the Row River, and Fall Creek downstream from Cottage Grove, Dexter, Dorena, and Fall Creek Dams, respectively; South Fork McKenzie River downstream from Cougar Dam; McKenzie River downstream from its confluence with the South Fork McKenzie River; South Santiam River downstream from Foster Dam; North Santiam River downstream from Big Cliff Dam; and Willamette River from its start at the confluence of the Middle Fork Willamette and Coast Fork Willamette Rivers to Willamette Falls (river mile 26.0; near West Linn, Oregon). This report documents model modifications, boundary condition data sources or estimation methods, and goodness-of-fit statistics for six CE-QUAL-W2 reservoir models and one river model upstream from the existing river models. These models simulate (1) Hills Creek Lake; (2) Lookout Point Lake and Dexter Reservoir on the Middle Fork Willamette River; (3) the Middle Fork Willamette River reach between Hills Creek Dam upstream and Lookout Point Lake downstream; (4) Cougar Reservoir on the South Fork McKenzie River; (5) Green Peter Lake on the Middle Santiam River and Foster Lake on the South Santiam River; and (6) Detroit Lake and (7) Big Cliff Reservoir on the North Santiam River. These CE-QUAL-W2 models were built by a variety of researchers to simulate a range of conditions in past years; this report documents their upgrade to U.S. Geological Survey (USGS) edition 7 of version 4.2 of CE-QUAL-W2 and updates each model to simulate conditions from January through December of 2011, 2015, and 2016. Also included in this report is an explanation of modifications to the CE-QUAL-W2 source code that constitute USGS edition 7 of CE-QUAL-W2 version 4.2. Each of the models described in this report can be run in isolation or linked to downstream models as a “system model” to simulate conditions in tributaries and (or) in the Willamette Valley Project as a whole. As part of the model updates described in this report, some model parameters were adjusted to improve stability or decrease model error, and boundary conditions including meteorological, hydrologic, and temperature inputs were developed and updated for model years 2011, 2015, and 2016, as necessary. In some cases, the data sources used to drive previous model versions were no longer available, which required the development and checking of new data sources or estimation techniques. Goodness-of-fit statistics for outflow from the dams and in simulated river reaches generally show a good model fit, with the models simulating subdaily water temperatures at most comparable locations with a mean absolute error of generally less than 1 degree Celsius (°C) and a reasonably low bias. Model simulation of the thermal vertical profiles in each reservoir also produced an overall mean absolute error of generally less than 1 °C for all 3 years, with the exception of the Hills Creek Lake Model and the Cougar Reservoir Model in years when the reservoirs did not fill (2015 and 2016). Both of these models have known calibration issues and tend to be sensitive to the choice of certain structural parameters in the model. Overall, the calibration process was focused on obtaining model settings that led to realistic water temperature predictions in all 3 years (2011, 2015, and 2016) without over-calibrating specifically to any single year. A complete investigation of model error for these reservoir submodels was beyond the scope of this investigation but could be undertaken in the future if better model performance for these two reservoirs is desired.
Report of the committee on glaciers, 1936–37
The Committee was enlarged during the past year by one more member, Prof. J. E. Church of Reno, Nevada, Chairman of the Committee on Snow, who agreed to serve on it while the Chairman of the Committee on Glaciers in turn accepted membership on the Committee on Snow. Thus the two Committees, whose spheres of work are in some respects intimately related, have been brought into closer touch with each other. Although the Committee on Glaciers has assembled considerable data on different lines of glaciologic research during the past few years, it seems best to confine this report, like the preceding ones, to a record of the variations—advance or recession—of glaciers in the continental United States and Alaska, and to reserve the other data for presentation later, in separate papers. The variations of glaciers here reported are for the 12‐month period from the autumn of 1935 to the autumn of 1936.
Climate change science and modeling
This chapter provides a brief background on climate change science, climate simulation models, and models that project the impacts of changes in climate on tree species and ecosystems. Throughout the chapter, boxes list resources for more information on each topic. A more detailed scientific review of climate change science, trends, and modeling can be found in the Intergovernmental Panel on Climate Change (IPCC) Fifth Assessment Report (IPCC 2014), and the Fourth National Climate Assessment (U.S. Global Climate Research Program [USGCRP] 2017).
Studies by the U.S. Geological Survey in Alaska, 2004
The collection of six papers that follow continues the series of U.S. Geological Survey (USGS) investigative reports in Alaska under the broad umbrella of the geologic sciences. This series represents new and sometimes-preliminary findings that are of interest to Earth scientists in academia, government, and industry; to land and resource managers; and to the general public. The reports presented in Studies by the U.S. Geological Survey in Alaska cover a broad spectrum of topics from various parts of the State, serving to emphasize the diversity of USGS efforts to meet the Nation's needs for Earth-science information in Alaska. This professional paper is the first 'online only' version of Studies by the U.S. Geological Survey in Alaska, reflecting the current trend toward disseminating research results on the World Wide Web with rapid posting of completed reports.
Studies by the U.S. Geological Survey in Alaska, 2005
Summary The collection of papers that follows continues the series of U.S. Geological Survey (USGS) investigative reports in Alaska under the broad umbrella of the geologic sciences. This series represents new and sometimes-preliminary findings that are of interest to Earth scientists in academia, government, and industry; to land and resource managers; and to the general public. The reports presented in Studies by the U.S. Geological Survey in Alaska cover a broad spectrum of topics from various parts of the State, serving to emphasize the diversity of USGS efforts to meet the Nation’s needs for Earth-science information in Alaska. This professional paper is one of a series of “online only” versions of Studies by the U.S. Geological Survey in Alaska , reflecting the current trend toward disseminating research results on the World Wide Web with rapid posting of completed reports.
Studies by the U.S. Geological Survey in Alaska, 2007
The collection of papers that follow continues the series of U.S. Geological Survey (USGS) investigative reports in Alaska under the broad umbrella of the geologic sciences. This series represents new and sometimes-preliminary findings that are of interest to Earth scientists in academia, government, and industry; to land and resource managers; and to the general public. The reports presented in Studies by the U.S. Geological Survey in Alaska cover a broad spectrum of topics from various parts of the State, serving to emphasize the diversity of USGS efforts to meet the Nation's needs for Earth-science information in Alaska. This professional paper is one of a series of 'online only' versions of Studies by the U.S. Geological Survey in Alaska, reflecting the current trend toward disseminating research results on the World Wide Web with rapid posting of completed reports.
Studies by the U.S. Geological Survey in Alaska, 2008-2009
The collection of papers that follow continues the series of U.S. Geological Survey (USGS) investigative reports in Alaska under the broad umbrella of the geologic sciences. This series represents new and sometimes-preliminary findings that are of interest to Earth scientists in academia, government, and industry; to land and resource managers; and to the general public. The reports presented in Studies by the U.S. Geological Survey in Alaska cover a broad spectrum of topics from various parts of the State, serving to emphasize the diversity of USGS efforts to meet the Nation's needs for Earth-science information in Alaska. This professional paper is one of a series of 'online only' versions of Studies by the U.S. Geological Survey in Alaska, reflecting the current trend toward disseminating research results on the World Wide Web with rapid posting of completed reports.
Studies by the U.S. Geological Survey in Alaska, 2010
The collection of papers that follows continues the series of U.S. Geological Survey (USGS) investigative reports in Alaska under the broad umbrella of the geologic sciences. This series represents new and sometimes-preliminary findings that are of interest to Earth scientists in academia, government, and industry; to land and resource managers; and to the general public. The reports presented in Studies by the U.S. Geological Survey in Alaska cover a broad spectrum of topics from various parts of the State, serving to emphasize the diversity of USGS efforts to meet the Nation’s needs for Earth-science information in Alaska. This professional paper is one of a series of “online only” versions of Studies by the U.S. Geological Survey in Alaska , reflecting the current trend toward disseminating research results on the World Wide Web with rapid posting of completed reports.
Studies by the U.S. Geological Survey in Alaska, 2011
The collection of papers that follow continues the series of U.S. Geological Survey (USGS) investigative reports in Alaska under the broad umbrella of the geologic sciences. This series represents new and sometimes-preliminary findings that are of interest to Earth scientists in academia, government, and industry; to land and resource managers; and to the general public. The reports presented in Studies by the U.S. Geological Survey in Alaska cover a broad spectrum of topics from various parts of the State, serving to emphasize the diversity of USGS efforts to meet the Nation's needs for Earth-science information in Alaska. This professional paper is one of a series of "online only" versions of Studies by the U.S. Geological Survey in Alaska , reflecting the current trend toward disseminating research results on the World Wide Web with rapid posting of completed reports.
Wind River Watershed Restoration: Annual Report April 2005 - March 2006
This report summarizes work completed by U.S. Geological Survey’s Columbia River Research Laboratory (USGS-CRRL) in the Wind River subbasin during the period April 2005 through March 2006 under Bonneville Power Administration (BPA) contract 22095. During this period, we collected temperature, flow, and habitat data to characterize habitat condition and variation within and among tributaries and mainstem sections in the Wind River subbasin. We also conducted electrofishing and snorkeling surveys to determine juvenile salmonid populations within select study areas throughout the subbasin. Portions of this work were completed with additional funding from U.S. Fish and Wildlife Service (USFWS) and the Lower Columbia Fish Enhancement Group (LCFEG).
How and why is the timing and occurrence of seasonal migrants in the Gulf of Maine changing due to climate?
Plants and animals undergo certain recurring life-cycle events, such as migrations between summer and winter habitats or the annual blooming of plants. Known as phenology, the timing of these events is very sensitive to changes in climate (and changes in one species’ phenology can impact entire food webs and ecosystems). Shifts in phenology have been described as a “fingerprint” of the temporal and spatial responses of wildlife to climate change impacts. Thus, phenology provides one of the strongest indicators of the adaptive capacity of organisms (or the ability of organisms to cope with future environmental conditions). In this study, researchers are exploring how the timing and occurrence of a number of highly migratory marine animals is changing due to a series of climatic and ecological shifts. First, using existing long-term historical data series, they will determine the direction and magnitude of how migration, abundance, or other phenological factors have changed for marine mammals, sea turtles, and fishes that migrate into the Gulf of Maine on a seasonal basis. Because marine animals are inherently difficult to detect, the team will apply dynamic occupancy models to evaluate seasonal migration patterns and habitat use across multiple habitats in the Gulf of Maine region. The project team will also synthesize regional information on a key, ecologically-important prey fish, sandlance, whose timing and abundance is a strong predictor of the occurrence and behavior of predator species targeted in this study as well as a range of other regional fish and wildlife of conservation and management concern. Results from this component of the project will identify coastal fish and wildlife species that are relatively more or less able to adapt and thus potentially vulnerable to climate change; determine the likely primary drivers of those changes; and identify data gaps and future monitoring needs. Ultimately, this information will be available and useful for regional coastal management and adaptation decisions that will allow managers to effectively plan for the future. In a second component of the project, researchers will focus specifically on changes in migration patterns of the endangered North Atlantic right whale. While shifts in the distribution and time of recurring life events are adaptive responses that may help species cope with climate impacts, they can also lead to changes in how species interact with humans. The North Atlantic right whale is one of the most endangered whale species on the planet. In the North Atlantic Ocean, ship strikes and entanglements with commercial fishing gear represent fatal threats to right whales. Recent reports suggest that North Atlantic right whale migration patterns have changed. Many researchers posit that shifts in migration are responsible for recent increases in the overlap between right whales and human activities, especially fishing. To help understand how changes in right whale movements and behaviors may overlap with ship traffic, and thus put the animals at risk of encountering vessels, we will combine right whale habitat models with ship traffic maps. The end result will be a set of maps identifying risk levels.