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Nucleation and growth of strike slip faults in granite

Fractures within granodiorite of the central Sierra Nevada, California, were studied to elucidate the mechanics of faulting in crystalline rocks, with emphasis on the nucleation of new fault surfaces and their subsequent propagation and growth. Within the study area the fractures form a single, subparallel array which strikes N50°–70°E and dips steeply to the south. Some of these fractures are identified as joints because displacements across the fracture surfaces exhibit dilation but no slip. The joints are filled with undeformed minerals, including epidote and chlorite. Other fractures are identified as small faults because they display left-lateral strike slip separations of up to 2 m. Slickensides, developed on fault surfaces, plunge 0°–20° to the east. The faults occur parallel to, and in the same outcrop with, the joints. The faults are filled with epidote, chlorite, and quartz, which exhibit textural evidence of shear deformation. These observations indicate that the strike slip faults nucleated on earlier formed, mineral-filled joints. Secondary, dilational fractures propagated from near the ends of some small faults contemporaneously with the left-lateral slip on the faults. These fractures trend 25°±10° from the fault planes, parallel to the direction of inferred local maximum compressive stress. The faults did not propagate into intact rock in their own planes as shear fractures. Rather, adjacent faults were linked together by secondary, dilational fractures. Extensive secondary fracturing between faults produced larger fault zones that accommodate 10–100 m of left-lateral slip. As deformation progressed, faulting evolved from relatively short, closely spaced faults to longer, more widely spaced fault zones.

Journal of Geophysical Research Solid Earth↗

The growth of geological structures by repeated earthquakes 1. Conceptual framework

In many places, earthquakes with similar characteristics have been shown to recur. If this is common, then relatively small deformations associated with individual earthquake cycles should accumulate over time to create geological structures. Following this paradigm, we show that existing models developed to describe leveling line changes associated with the seismic cycle can be adapted to explain geological features associated with a fault. In these models an elastic layer containing the fault overlies a viscous half-space with a different density. Fault motion associated with an earthquake results in immediate deformation followed by a long period of readjustment as stresses relax in the viscous layer and isostatic equilibrium is restored. Deformation is also caused as a result of the loading and unloading due to sediment deposition and erosion. In this paper, the parameters that control the growth of dip-slip structures are identified. We find that the flexural rigidity of the crust (or the apparent elastic thickness) provides the main control of the width of a structure. The loading due to erosion and deposition of sediment determines the ratio of uplift to subsidence between the two sides of the fault. The flexure due to sediment load is much more important in this respect than whether the fault is normal or reverse in character. We find that, in general, real structures are associated with apparent elastic thicknesses of 4 km or less and thus with very low flexural rigidities.

Journal of Geophysical Research Solid Earth↗

Positive feedback and momentum growth during debris-flow entrainment of wet bed sediment

Debris flows typically occur when intense rainfall or snowmelt triggers landslides or extensive erosion on steep, debris-mantled slopes. The flows can then grow dramatically in size and speed as they entrain material from their beds and banks, but the mechanism of this growth is unclear. Indeed, momentum conservation implies that entrainment of static material should retard the motion of the flows if friction remains unchanged. Here we use data from large-scale experiments to assess the entrainment of bed material by debris flows. We find that entrainment is accompanied by increased flow momentum and speed only if large positive pore pressures develop in wet bed sediments as the sediments are overridden by debris flows. The increased pore pressure facilitates progressive scour of the bed, reduces basal friction and instigates positive feedback that causes flow speed, mass and momentum to increase. If dryer bed sediment is entrained, however, the feedback becomes negative and flow momentum declines. We infer that analogous feedbacks could operate in other types of gravity-driven mass flow that interact with erodible beds.

Nature Geoscience↗

Growth form and lifespan of herbaceous species mediate the role of traits in short-term drought response

Increased climate variability is expected to intensify short-term drought events. Plants have evolved stress tolerance strategies involving trade-offs in resource conservation, mycorrhizal collaboration and plant size, yet how these strategies promote drought resistance across different herbaceous plant groups remains unknown. Leveraging 63 globally distributed grassland and shrubland sites from the International Drought Experiment, we identified plant traits linked to drought resistance in 661 populations of 421 species after 1 year of extreme drought. We assessed how traits, site precipitation and drought severity affected cover change across growth forms and lifespans, and how trait–environment interactions influenced drought resistance. Across all species, leaf N (an acquisitive trait) was associated with drought resistance, whereas in forbs, drought resistance was also associated with a conservative root trait and plant size. In addition, interactions among traits mediated drought resistance; root traits predicted performance only in concert with other traits. Environmental variables influenced trait effects on drought resistance, notably for annuals in wetter sites, suggesting that drought-escape strategies in annuals may be advantageous only under mild stress. Our study highlights variability in traits that predict drought resistance across herbaceous plant groups, emphasizing the importance of species context, environmental stress and the selection of traits in research and management.

Nature Ecology and Evolution↗

Divergent genes encoding the putative receptors for growth hormone and prolactin in sea lamprey display distinct patterns of expression

Growth hormone receptor (GHR) and prolactin receptor (PRLR) in jawed vertebrates were thought to arise after the divergence of gnathostomes from a basal vertebrate. In this study we have identified two genes encoding putative GHR and PRLR in sea lamprey (Petromyzon marinus) and Arctic lamprey (Lethenteron camtschaticum), extant members of one of the oldest vertebrate groups, agnathans. Phylogenetic analysis revealed that lamprey GHR and PRLR cluster at the base of gnathostome GHR and PRLR clades, respectively. This indicates that distinct GHR and PRLR arose prior to the emergence of the lamprey branch of agnathans. In the sea lamprey, GHR and PRLR displayed a differential but overlapping pattern of expression; GHR had high expression in liver and heart tissues, whereas PRLR was expressed highly in the brain and moderately in osmoregulatory tissues. Branchial PRLR mRNA levels were significantly elevated by stage 5 of metamorphosis and remained elevated through stage 7, whereas levels of GHR mRNA were only elevated in the final stage (7). Branchial expression of GHR increased following seawater (SW) exposure of juveniles, but expression of PRLR was not significantly altered. The results indicate that GHR and PRLR may both participate in metamorphosis and that GHR may mediate SW acclimation.

Scientific Reports↗

Morphological, elemental, and boron isotopic insights into pathophysiology of diseased coral growth anomalies

Growth anomalies (GAs) impact both coral skeleton and soft tissues and are detrimental to reef health. This tumor-like disease is increasingly found throughout the tropics and is commonly associated with high human population density, yet little is known about the etiology, pathology, or calcification behavior of the disease. Here, we investigate potential mechanisms involved in the development of GAs through chemical and morphological characterization of GA skeletons in Porites compressa from a site of high disease prevalence (Coconut Island, Hawaii). A comprehensive suite of trace elements and boron isotopes (δ11B) were measured in skeletal GAs to assess calcification behavior and uptake of essential and toxic metals. Scanning electron microscopy of GA skeleton revealed it to be highly porous consisting of a matrix with a disorganized crystal structure, in contrast to the dense well-organized normal skeleton of P. compressa. Elemental analyses revealed decreased Mg/Ca and increased U/Ca in GA skeletons relative to paired unaffected samples, suggesting a decreased abundance of rapidly accreting microstructures “centers of calcification” in the GAs. Estimates of carbonate system parameters based on δ11B and B/Ca measurements indicate reduced pH (–0.05 units) and [CO32–] within the calcifying fluid of GAs, which may have implications for GA calcification. Higher levels of essential (V/Ca and Mo/Ca) elements in GAs potentially indicate increased abundance of holobiont-associated, nitrogen-fixing bacteria and higher Sb/Ca and Nd/Ca indicate alteration in the accumulation/depuration of these toxic metals. In aggregate, our findings show that dystrophic calcification processes could explain structural differences seen in GA vs unaffected skeletons and highlight the use of approaches herein to shed light on disease pathophysiology in corals.

Scientific Reports↗

Growth models and the expected distribution of fluctuating asymmetry

Multiplicative error accounts for much of the size-scaling and leptokurtosis in fluctuating asymmetry. It arises when growth involves the addition of tissue to that which is already present. Such errors are lognormally distributed. The distribution of the difference between two lognormal variates is leptokurtic. If those two variates are correlated, then the asymmetry variance will scale with size. Inert tissues typically exhibit additive error and have a gamma distribution. Although their asymmetry variance does not exhibit size-scaling, the distribution of the difference between two gamma variates is nevertheless leptokurtic. Measurement error is also additive, but has a normal distribution. Thus, the measurement of fluctuating asymmetry may involve the mixing of additive and multiplicative error. When errors are multiplicative, we recommend computing log E ( l ) − log E ( r ), the difference between the logarithms of the expected values of left and right sides, even when size-scaling is not obvious. If l and r are lognormally distributed, and measurement error is nil, the resulting distribution will be normal, and multiplicative error will not confound size-related changes in asymmetry. When errors are additive, such a transformation to remove size-scaling is unnecessary. Nevertheless, the distribution of l − r may still be leptokurtic.

Biological Journal of the Linnean Society↗

Effects of life history variation on size and growth in stream-dwelling Atlantic salmon

A large size variation amongst life histories for stream-dwelling Atlantic salmon Salmo salar was found and the relative effect of life histories on size varied over time. As early as December (age 0+ years), fish that later smolted at age 2+ years were significantly larger than fish that did not smolt at age 2+ years. In contrast, there were no mass differences at age 0+ years between fish that would mature or not at age 1+ years (October). The mass differences between smolts and non-smolts persisted until smolting, and differences between mature and immature fish first appeared in May (age 1+ years). Following September (age 1+ years), there was also a significant interaction between smolting and maturity. Previously mature and immature age 2+ year smolts were not significantly different in size, but immature age 2+ year non-smolts were much lighter than mature age 2+ year non-smolts. Based on mass differences, the apparent 'decision' to smolt occurred c. 5 months before (winter, age 0+ years) the decision to mature (late spring, age 1+ years). In addition to strong seasonal growth variation, sizes of freshwater Atlantic salmon were largely structured by the complex interaction between smolt-age and maturity. ?? 2003 The fisheries Society of the British Isles.

Journal of Fish Biology↗

Root growth and function of three Mojave Desert grasses in response to elevated atmospheric CO2 concentration

Root growth and physiological responses to elevated CO 2 were investigated for three important Mojave Desert grasses: the C 3 perennial Achnatherum hymenoides , the C 4 perennial Pleuraphis rigida and the C 3 annual Bromus madritensis ssp. rubens . Seeds of each species were grown at ambient (360 μl l −1 ) or elevated (1000 μl l −1 ) CO 2 in a glasshouse and harvested at three phenological stages: vegetative, anthesis and seed fill. Because P. rigida did not flower during the course of this study, harvests for this species represent three vegetative stages. Primary productivity was increased in both C 3 grasses in response to elevated CO 2 (40 and 19% for A. hymenoides and B. rubens , respectively), but root biomass increased only in the C 3 perennial grass. Neither above-ground nor below-ground biomass of the C 4 perennial grass was significantly affected by the CO 2 treatment. Elevated CO 2 did not significantly affect root surface area for any species. Total plant nitrogen was also not statistically different between CO 2 treatments for any species, indicating no enhanced uptake of N under elevated CO 2 . Physiological uptake capacities for NO 3 and NH 4 were not affected by the CO 2 treatment during the second harvest; measurements were not made for the first harvest. However, at the third harvest uptake capacity was significantly decreased in response to elevated CO 2 for at least one N form in each species. NO 3 uptake rates were lower in A. hymenoides and P. rigida , and NH 4 uptake rates were lower in B. rubens at elevated CO 2 . Nitrogen uptake on a whole root-system basis (NO 3 +NH 4 uptake capacity × root biomass) was influenced positively by elevated CO 2 only for A. hymenoides after anthesis. These results suggest that elevated CO 2 may result in a competitive advantage for A. hymenoides relative to species that do not increase root-system N uptake capacity. Root respiration measurements normalized to 20 °C were not significantly affected by the CO 2 treatment. However, specific root respiration was significantly correlated with either root C∶N ratio or root water content when all data per species were included within a simple regression model. The results of this study provide little evidence for up-regulation of root physiology in response to elevated CO 2 and indicate that root biomass responses to CO 2 are species-specific.

New Phytologist↗

Population growth, fecundity, and survivorship in recovering populations of bighorn sheep

The single greatest obstacle to the restoration of large, healthy, populations of bighorn sheep ( Ovis canadensis ) in the western United States is epizootic outbreaks of bronchopneumonia that may kill 20–100% of the animals in populations. Although the species is capable of rapid initial growth rates following restoration into new habitat (λ = 1.23–1.30 have been observed), these rates of increase are typical only a few years following the release of a population, and then most populations either decline to extirpation or remnant status (<30 animals) or remain at <100 individuals. We studied the fecundity and survivorship of three increasing, and three declining and suspected diseased, populations of bighorn sheep (the latter were subjected to outbreaks of bronchopneumonia) located in or near several large national parks in the western United States from 1991 to 1996. Titers verified both population categories were exposed to the bacteria Pasteurella haemolytica serotypes 3; 4; and 3, 4, 10; Moraxella sp., and parainfluenza-3 and bluetongue (BT) viruses. Pregnancy rates of adult ewes were not different in increasing or decreasing populations (pooled rate = 0.93; p = 0.57), but pregnancy rates of yearlings were lower (0.00 for decreasing vs. 0.33 for increasing populations), initial production of lambs and annual recruitment of lambs was lower (0.14, decreasing vs. 0.66, p < 0.05). Adult survival was lower during the first year of an epizootic, 0.62, in one population, but recovered to 0.85 by the second and subsequent years. Survival of adult rams was variable in diseased populations; in two populations rams appeared to be disproportionately impacted, but in a third population rams survived better during the epizootic. In all the increasing park (unhunted) populations, adult ram survival (0.94 ± 0.01) was higher than adult ewe survival (0.89 ± 0.02) ( p = 0.10), in contrast to published information from hunted populations where ram survival was lower. Removal of about 20% of one population for restorations severely impacted one declining population. Removals of 12–20% appeared to be excessive and were not readily compensated for in the Canyonlands National Park desert bighorn population. Disease was a significant limiting factor to restoration of bighorn sheep in the study areas; six of 11 total recovering populations we monitored closely were negatively influenced by apparent disease at some time during our observations.

Restoration Ecology↗

Survival, growth and reproduction of non-indigenous Nile tilapia, Oreochromis niloticus (Linnaeus 1758). I. Physiological capabilities in various temperatures and salinities

The physiological tolerances of non-native fishes is an integral component of assessing potential invasive risk. Salinity and temperature are environmental variables that limit the spread of many non-native fishes. We hypothesised that combinations of temperature and salinity will interact to affect survival, growth, and reproduction of Nile tilapia, Oreochromis niloticus , introduced into Mississippi, USA. Tilapia withstood acute transfer from fresh water up to a salinity of 20 and survived gradual transfer up to 60 at typical summertime (30&deg;C) temperatures. However, cold temperature (14&deg;C) reduced survival of fish in saline waters &ge;10 and increased the incidence of disease in freshwater controls. Although fish were able to equilibrate to saline waters in warm temperatures, reproductive parameters were reduced at salinities &ge;30. These integrated responses suggest that Nile tilapia can invade coastal areas beyond their point of introduction. However, successful invasion is subject to two caveats: (1) wintertime survival depends on finding thermal refugia, and (2) reproduction is hampered in regions where salinities are &ge;30. These data are vital to predicting the invasion of non-native fishes into coastal watersheds. This is particularly important given the predicted changes in coastal landscapes due to global climate change and sea-level rise.

Mississippi↗

Regulating continent growth and composition by chemical weathering

Continents ride high above the ocean floor because they are underlain by thick, low-density, Si-rich, and Mg-poor crust. However, the parental magmas of continents were basaltic, which means they must have lost Mg relative to Si during their maturation into continents. Igneous differentiation followed by lower crustal delamination and chemical weathering followed by subduction recycling are possible solutions, but the relative magnitudes of each process have never been quantitatively constrained because of the lack of appropriate data. Here, we show that the relative contributions of these processes can be obtained by simultaneous examination of Mg and Li (an analog for Mg) on the regional and global scales in arcs, delaminated lower crust, and river waters. At least 20% of Mg is lost from continents by weathering, which translates into >20% of continental mass lost by weathering (40% by delamination). Chemical weathering leaves behind a more Si-rich and Mg-poor crust, which is less dense and hence decreases the probability of crustal recycling by subduction. Net continental growth is thus modulated by chemical weathering and likely influenced by secular changes in weathering mechanisms. ?? 2008 by The National Academy of Sciences of the USA.

Proceedings of the National Academy of Sciences of↗

Discovery of prolactin-like in lamprey: Role in osmoregulation and new insight into the evolution of the growth hormone/prolactin family

We used a representative of one of the oldest extant vertebrate lineages (jawless fish or agnathans) to investigate the early evolution and function of the growth hormone (GH)/prolactin (PRL) family. We identified a second member of the GH/PRL family in an agnathan, the sea lamprey ( Petromyzon marinus ). Structural, phylogenetic, and synteny analyses supported the identification of this hormone as prolactin-like (PRL-L), which has led to added insight into the evolution of the GH/PRL family. At least two ancestral genes were present in early vertebrates, which gave rise to distinct GH and PRL-L genes in lamprey. A series of gene duplications, gene losses, and chromosomal rearrangements account for the diversity of GH/PRL-family members in jawed vertebrates. Lamprey PRL-L is produced in the proximal pars distalis of the pituitary and is preferentially bound by the lamprey PRL receptor, whereas lamprey GH is preferentially bound by the lamprey GH receptor. Pituitary PRL-L messenger RNA (mRNA) levels were low in larvae, then increased significantly in mid-metamorphic transformers (stage 3); thereafter, levels subsided in final-stage transformers and metamorphosed juveniles. The abundance of PRL-L mRNA and immunoreactive protein increased in the pituitary of juveniles under hypoosmotic conditions, and treatment with PRL-L blocked seawater-associated inhibition of freshwater ion transporters. These findings clarify the origin and divergence of GH/PRL family genes in early vertebrates and reveal a function of PRL-L in osmoregulation of sea lamprey, comparable to a role of PRLs that is conserved in jawed vertebrates.

PNAS↗

Effects of fluctuating flows and a controlled flood on incubation success and early survival rates and growth of age-0 rainbow trout in a large regulated river

Hourly fluctuations in flow from Glen Canyon Dam were increased in an attempt to limit the population of nonnative rainbow trout Oncorhynchus mykiss in the Colorado River, Arizona, due to concerns about negative effects of nonnative trout on endangered native fishes. Controlled floods have also been conducted to enhance native fish habitat. We estimated that rainbow trout incubation mortality rates resulting from greater fluctuations in flow were 23–49% (2003 and 2004) compared with 5–11% under normal flow fluctuations (2006–2010). Effects of this mortality were apparent in redd excavations but were not seen in hatch date distributions or in the abundance of the age-0 population. Multiple lines of evidence indicated that a controlled flood in March 2008, which was intended to enhance native fish habitat, resulted in a large increase in early survival rates of age-0 rainbow trout. Age-0 abundance in July 2008 was over fourfold higher than expected given the number of viable eggs that produced these fish. A hatch date analysis indicated that early survival rates were much higher for cohorts that hatched about 1 month after the controlled flood (∼April 15) relative to those that hatched before this date. The cohorts that were fertilized after the flood were not exposed to high flows and emerged into better-quality habitat with elevated food availability. Interannual differences in age-0 rainbow trout growth based on otolith microstructure supported this hypothesis. It is likely that strong compensation in survival rates shortly after emergence mitigated the impact of incubation losses caused by increases in flow fluctuations. Control of nonnative fish populations will be most effective when additional mortality is applied to older life stages after the majority of density-dependent mortality has occurred. Our study highlights the need to rigorously assess instream flow decisions through the evaluation of population-level responses.

Arizona↗

Effects of suture material and ultrasonic transmitter size on survival, growth, wound healing, and tag expulsion in rainbow trout

We examined the effects of suture material (braided silk versus Monocryl) and relative ultrasonic transmitter size on healing, growth, mortality, and tag retention in rainbow trout Oncorhynchus mykiss . In experiment 1, 40 fish (205–281 mm total length [TL], 106–264 g) were implanted with Sonotronics IBT‐96–2 (23 × 7 mm; weight in air, 4.4 g; weight in water, 2.4 g) or IBT 96–2E (30 × 7 mm; weight in air, 4.9 g; weight in water, 2.4 g) ultrasonic telemetry tags. In experiment 2, 20 larger fish (342–405 mm TL; 520–844 g) were implanted with Sonotronics IBT‐96–5 ultrasonic tags (36 × 11 mm; weight in air, 9.1 g; weight in water, 4.1 g). The tag burdens for all implanted fish ranged from 1.1% to 3.4%, and fish in both studies were held at 10–15°C. At the conclusion of both experiments (65 d after surgery), no mortalities were observed in any of the 60 tagged fish, most incisions were completely healed, and all fish in both experiments grew in length, although tagged fish grew more slowly than control fish in experiment 1. In both experiments, fish sutured with silk expelled tags more frequently than those sutured with Monocryl. Expulsion was observed in 45–50% of the fish sutured with silk and 0–25% of the fish sutured with Monocryl. Tag expulsion was not observed until 25–35 d after surgery. Fish sutured with silk exhibited a more severe inflammatory response 3 weeks after surgery than those sutured with Monocryl. In experiment 1, the rate of expulsion was linked to the severity of inflammation. Although braided silk sutures were applied faster than Moncryl sutures in both experiments, knots tied with either material were equally reliable and fish sutured with Monocryl experienced less inflammation and lower rates of tag expulsion.

Transactions of the American Fisheries Society↗

Influence of Didymosphenia geminata blooms on prey composition and associated diet and growth of Brown Trout

We compared diet, stomach fullness, condition, and growth of Brown Trout Salmo trutta among streams with or without blooms of the benthic diatom Didymosphenia geminata in the Black Hills, South Dakota. In Rapid Creek, where D. geminata blooms covered ∼30% of the stream bottom, Brown Trout consumed fewer ephemeropterans (6–8% by weight) than individuals from two stream sections that have not had D. geminata blooms (Castle and Spearfish creeks; 13–39% by weight). In contrast, dipterans (primarily Chironomidae) represented a larger percentage of Brown Trout diets from Rapid Creek ( D. geminata blooms present; 16–28% dry weight) compared with diets of trout from streams without D. geminata blooms (6–19% dry weight). Diets of small Brown Trout (100–199 mm TL) reflected the invertebrate species composition in benthic stream samples; in Rapid Creek, ephemeropterans were less abundant whereas dipterans were more abundant than in streams without D. geminata blooms. Stomach fullness and condition of Brown Trout from Rapid Creek were generally greater than those of Brown Trout from other populations. Linkages among invertebrate availability, diet composition, and condition of Brown Trout support the hypothesis that changes in invertebrate assemblages associated with D. geminata (i.e., more Chironomidae) could be contributing to high recruitment success for small Brown Trout in Rapid Creek.

Transactions of the American Fisheries Society↗

Interactions between hatch dates, growth rates, and mortality of Age-0 native Rainbow Smelt and nonnative Alewife in Lake Champlain

Timing of hatch in fish populations can be critical for first-year survival and, therefore, year-class strength and subsequent species interactions. We compared hatch timing, growth rates, and subsequent mortality of age-0 Rainbow Smelt Osmerus mordax and Alewife Alosa pseudoharengus , two common open-water fish species of northern North America. In our study site, Lake Champlain, Rainbow Smelt hatched (beginning May 26) almost a month earlier than Alewives (June 20). Abundance in the sampling area was highest in July for age-0 Rainbow Smelt and August for age-0 Alewives. Late-hatching individuals of both species grew faster than those hatching earlier (0.6 mm/d versus 0.4 for Rainbow Smelt; 0.7 mm/d versus 0.6 for Alewives). Mean mortality rate during the first 45 d of life was 3.4%/d for age-0 Rainbow Smelt and was 5.5%/d for age-0 Alewives. Alewife mortality rates did not differ with hatch timing but daily mortality rates of Rainbow Smelt were highest for early-hatching fish. Cannibalism is probably the primary mortality source for age-0 Rainbow Smelt in this lake. Therefore, hatching earlier may not be advantageous because the overlap of adult and age-0 Rainbow Smelt is highest earlier in the season. However, Alewives, first documented in Lake Champlain in 2003, may increase the mortality of age-0 Rainbow Smelt in the summer, which should favor selection for earlier hatching.

Vermont↗