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USGS2019

Tectono-magmatic evolution of porphyry belts in the central Tethys region of Turkey, the Caucasus, Iran, western Pakistan, and southern Afghanistan

Exploration in the central Tethys region of Turkey, Armenia, Azerbaijan, Georgia, Iran, and weste rn Pakistan has led to the identification of the giant Reko Diq (24 Mt Cu and 1300 t Au), Sar Cheshmeh (8.9 Mt Cu and 0.46 Mt Mo), Sungun (5.1 Mt Cu and 0.20 Mt Mo), and Kadjaran (4.6 Mt Cu, 0.94 Mt Mo, and 1100 t Au), and 10 other large (1–2 Mt Cu) porphyry deposits including Saindak, Cevizlidere, Teghout, Meiduk, and Halilağa. Continued exploration efforts have also resulted in the development of porphyry-related gold deposits such as Kişladağ (9.6 Moz Au), Çöpler (3.7 Moz Au), Aği Daği (1.7 Moz Au), and Sary Gunay (3.0 Moz Au), and in the generation of several other promising exploration projects. The distribution in space and time of porphyry deposits in the central Tethys region was shaped by complex pre- to post-mineral tectonic, igneous, collisional, uplift and burial events. These events are represented by a partially-overlapping and variably exhumed and covered collage of twenty-six Early Jurassic to Holocene magmatic belts permissive for the occurrence of porphyry deposits (porphyry tracts and sub-tracts). Twelve tracts or sub-tracts are characterized by compressional continental arcs that formed on drifting terranes or continental margins, 10 developed in compressional to extensional intra-oceanic arc and backarc-rift settings, and 4 formed in extensional post-collisional environments over amalgamated terranes. Eight of these belts were variably affected by coeval and younger metamorphic, fold-and-thrust, and extensional faulting events. Fifty-four porphyry Au-(Cu), Cu-Au, Cu-Mo, Mo-Cu deposits, 15 porphyry-related Au, Au-(Mo) and W-(Mo-Au) deposits, 239 porphyry prospects, and 68 other porphyry-related mineral sites were identified in the study region. Of the 376 porphyry and porphyry-related sites, about 11% formed in island arc, 42% in continental arc, 20% in backarc, and 27% in post-collisional settings. Of the 69 porphyry and porphyry-related deposits, 7% developed in intra-oceanic arc, 41% in continental arc, 27% in backarc, and 25% in post-collisional settings. The largest occur in either compressional continental arc (18 deposits including the Reko Diq and Sar Cheshmeh giants) or post-collisional (13 deposits including the Kadjaran and Sungun giants) environments. Ninety percent of the largest porphyry or porphyry-related deposits occur in only 9 of the 26 permissive porphyry tracts or sub-tracts. Moreover, 88, 90, and 77% of the identified Cu, Mo, and Au resources are contained in porphyry deposits that occur in only 4 of these 9 tracts. Of these 4 tracts, 3 outline arc settings, and one delimits a post-collisional environment. The compositional diversity of porphyry intrusions in these tectono-magmatic environments generally varies from island arc settings with the most restricted range (partly alkaline but mainly calc-alkaline dioritic to granodioritic-tonalitic), to continental arc (calc-alkaline dioritic-quartz dioritic, granodioritic, quartz monzonitic-granitic, and less commonly mildly alkaline), to backarc (mildly alkaline and calc-alkaline dioritic to granitic), to post-collisional settings with the most expansive range (alkaline and calc-alkaline mafic to felsic, and weakly peraluminous). Metal associations also vary broadly as a function of porphyry intrusion composition from weakly peraluminous to metaluminous felsic (Mo[±W ± Cu]; <2% of porphyry-related systems [i.e., Tyrnyauz]), to metaluminous felsic and intermediate (Cu-Mo[±Au]; 85% [i.e., Cevizlidere, Haft Cheshmeh, Kahang, Sar Cheshmeh, Sungun, Teghout, Reko Diq, Saindak]), to mildly alkaline felsic and intermediate (Cu-Au[±Mo] [i.e., Agarak, Kadjaran, Kale Kafi]) and mafic (Au-Cu; 12% [i.e., Çöpler]), and to alkaline felsic (Au-Mo; 1% of porphyry-related systems [i.e., Kişladağ). Tectonic changes were critical in triggering the formation of large porphyry deposits in the region. Large porphyry deposits were preferentially emplaced in continental arc settings shortly before major collisional events (Dar Alu, Kahang, Meiduk, Now Chun, and the giant Sar Cheshmeh and Reko Diq deposits), or in post-subduction environments shortly after collision (Bakirçay, Güzelyayla, Haft Cheshmeh, Masjed Daghi, and the giant Kadjaran and Sungun deposits) or during periods of prominent extension (Aği Daği, Halilağa, Kişladağ, Sari Gunay, and Zarshuran porphyry-related deposits). Collision-induced uplift, erosion, and removal of coeval volcanic rocks favorably exposed the hypabyssal level of subduction-related porphyry deposits. Extensional structures that developed parallel and orthogonal to the compressional principal stress component along transtensional or transpressional strike-slip faults or in pull-apart basins commonly controlled porphyry-related deposits in post-collisional settings. The latter deposits typically exhibit shallow epithermal levels of emplacement because of preservation by burial. Seventeen porphyry deposits and one porphyry-related deposit in the study region are reported to contain significant supergene resources. Relatively mature levels of secondary copper enrichment in dominantly granodioritic to granitic porphyry deposits occur in areas where large pyrite-rich quartz-sericite alteration zones have been preserved and exposed to surface oxidation (Güzelyayla and Ulutaş in northeastern Turkey; Agarak, Ankavan, Dastakert, Kadjaran, and Teghout in Armenia; Ali Javad in northern Iran; Kale Kafi in central Iran; Darreh Zar, Meiduk, Now Chun, and Sar Cheshmeh in southeastern Iran; and Tanjeel in southwestern Pakistan). Chalcocite blankets also developed over porphyry deposits in regions where significant post-mineral faulting has occurred (Muratdere and Sarıçayıryayla in western Turkey). Normal faulting also enhanced secondary enrichment of gold in the Halilağa porphyry and Sary Gunay porphyry-related deposits located respectively in western Turkey and northern Iran. Evaluation of provincial as well as local controls strongly suggests that continued exploration in the region will lead to the identification of additional porphyry and porphyry-related deposits. These deposits will likely be found under younger cover formations in porphyry belts that are already known, and in association with superjacent high- and intermediate-sulfidation epithermal deposits, or increasingly peripheral skarn, carbonate-replacement, and sediment-hosted deposits. Application of suitable exploration techniques to detect concealed and/or deformed deposits in porphyry belts that remain under-explored may also prove productive.

Tethys region↗

USGS2004

Probabilistic seismic hazard analysis for Sumatra, Indonesia and across the Southern Malaysian Peninsula

The ground motion hazard for Sumatra and the Malaysian peninsula is calculated in a probabilistic framework, using procedures developed for the US National Seismic Hazard Maps. We constructed regional earthquake source models and used standard published and modified attenuation equations to calculate peak ground acceleration at 2% and 10% probability of exceedance in 50 years for rock site conditions. We developed or modified earthquake catalogs and declustered these catalogs to include only independent earthquakes. The resulting catalogs were used to define four source zones that characterize earthquakes in four tectonic environments: subduction zone interface earthquakes, subduction zone deep intraslab earthquakes, strike-slip transform earthquakes, and intraplate earthquakes. The recurrence rates and sizes of historical earthquakes on known faults and across zones were also determined from this modified catalog. In addition to the source zones, our seismic source model considers two major faults that are known historically to generate large earthquakes: the Sumatran subduction zone and the Sumatran transform fault. Several published studies were used to describe earthquakes along these faults during historical and pre-historical time, as well as to identify segmentation models of faults. Peak horizontal ground accelerations were calculated using ground motion prediction relations that were developed from seismic data obtained from the crustal interplate environment, crustal intraplate environment, along the subduction zone interface, and from deep intraslab earthquakes. Most of these relations, however, have not been developed for large distances that are needed for calculating the hazard across the Malaysian peninsula, and none were developed for earthquake ground motions generated in an interplate tectonic environment that are propagated into an intraplate tectonic environment. For the interplate and intraplate crustal earthquakes, we have applied ground-motion prediction relations that are consistent with California (interplate) and India (intraplate) strong motion data that we collected for distances beyond 200 km. For the subduction zone equations, we recognized that the published relationships at large distances were not consistent with global earthquake data that we collected and modified the relations to be compatible with the global subduction zone ground motions. In this analysis, we have used alternative source and attenuation models and weighted them to account for our uncertainty in which model is most appropriate for Sumatra or for the Malaysian peninsula. The resulting peak horizontal ground accelerations for 2% probability of exceedance in 50 years range from over 100% g to about 10% g across Sumatra and generally less than 20% g across most of the Malaysian peninsula. The ground motions at 10% probability of exceedance in 50 years are typically about 60% of the ground motions derived for a hazard level at 2% probability of exceedance in 50 years. The largest contributors to hazard are from the Sumatran faults.

Tectonophysics↗

USGS2012

Dinocyst taphonomy, impact craters, cyst ghosts, and the Paleocene-Eocene thermal maximum (PETM)

Dinocysts recovered from sediments related to the Chesapeake Bay impact structure in Virginia and the earliest Eocene suboxic environment in Maryland show strange and intriguing details of preservation. Features such as curled processes, opaque debris, breakage, microborings and cyst ghosts, among others, invite speculation about catastrophic depositional processes, rapid burial and biological and chemical decay. Selected specimens from seven cores taken in the coastal plain of Virginia and Maryland show abnormal preservation features in various combinations that merit illustration, description, discussion and further study. Although the depositional environments described are extreme, many of the features discussed are known from, or could be found in, other environments. These environments will show both similarities to and differences from the extreme environments here.

Maryl;Virginia↗

USGS2019

Local niche differences predict genotype associations in sister taxa of desert tortoise

Aims To investigate spatial congruence between ecological niches and genotype in two allopatric species of desert tortoise that are species of conservation concern. Location Mojave and Sonoran Desert ecoregions; California, Nevada, Arizona, Utah, USA. Methods We compare ecological niches of Gopherus agassizii and Gopherus morafkai using species distribution modelling (SDM) and then calibrate a pooled‐taxa distribution model to explore local differences in species–environment relationships based on the spatial residuals of the pooled‐taxa model. We use multiscale geographically weighted regression (MGWR) applied to those residuals to estimate local species–environment relationships that can vary across the landscape. We identify multivariate clusters in these local species–environment relationships and compare them against models of (a) a geographically based taxonomic designation for two sister species and (b) an environmental ecoregion designation, with respect to their ability to predict a genotype association index for these two species. Results We find non‐identical niches for these species, with differences that span physiographic and vegetation niche dimensions. We find evidence for two distinct clusters of local species–environment relationships that when mapped, predict an index of genotype association for the two sister taxa better than did either the geographically based taxonomic designation or an environmental ecoregion designation. Main conclusions Exploring local species–environment relationships by coupling SDM and MGWR can benefit studies of biogeography and conservation. We find that niche separation in habitat selection conforms to genotypic differences between sister taxa of tortoise in a recent secondary contact zone. This result may inform decision making by agencies with regulatory or land management authority for the two sister taxa addressed here.

Arizona, California, Nevada, Utah↗

USGS2022

Defining an epidemiological landscape that connects movement ecology to pathogen transmission and pace-of-life

Pathogen transmission depends on host density, mobility and contact. These components emerge from host and pathogen movements that themselves arise through interactions with the surrounding environment. The environment, the emergent host and pathogen movements, and the subsequent patterns of density, mobility and contact form an ‘epidemiological landscape’ connecting the environment to specific locations where transmissions occur. Conventionally, the epidemiological landscape has been described in terms of the geographical coordinates where hosts or pathogens are located. We advocate for an alternative approach that relates those locations to attributes of the local environment. Environmental descriptions can strengthen epidemiological forecasts by allowing for predictions even when local geographical data are not available. Environmental predictions are more accessible than ever thanks to new tools from movement ecology, and we introduce a ‘movement-pathogen pace of life’ heuristic to help identify aspects of movement that have the most influence on spatial epidemiology. By linking pathogen transmission directly to the environment, the epidemiological landscape offers an efficient path for using environmental information to inform models describing when and where transmission will occur.

Ecology Letters↗

USGS2006

Evolution of a trench-slope basin within the Cascadia subduction margin: The Neogene Humboldt Basin, California

The Neogene Humboldt (Eel River) Basin is located along the north-eastern margin of the Pacific Ocean within the Cascadia subduction zone. This sedimentary basin originated near the base of the accretionary prism in post-Eocene time. Subduction processes since that time have elevated strata in the south-eastern portion of the basin above sea level. High-resolution chronostratigraphic data from the onshore portion of the Humboldt Basin enable correlation of time-equivalent lithofacies across the palaeomargin, reconstruction of slope-basin evolution, and preliminary delineation of climatic and tectonic influence on lithological variation. Emergent basin fill is divided into five lithofacies which clearly document shoaling of the inner trench slope from deep-water environments in early Miocene time to paralic environments in Pleistocene time. The oldest strata consist of hemipelagic mudstones and minor debris-flow breccias deposited in a deep-water setting during elevated sea level. These strata are overlain by glauconite-rich, fine-grained turbidites which heralded an increasing influx of terrigenous detritus. Water depths shoaled earlier in the eastern basin area as the palaeoshoreline prograded seaward. Turbidite deposition ceased in the eastern basin area at about 2-2 Ma, whereas 22 km to the west, turbidite deposition continued until about 1-8 Ma. Lithofacies at the western study site change abruptly across a middle Pleistocene unconformity from outer shelf to paralic deposits. In the east, a more complete Pleistocene section records transition from outer to inner shelf, beach and fluvial environments. The Humboldt Basin lithofacies sequence is overprinted by eustatic control of sediment source. Comparison of sediment character with palaeoceanographic conditions indicates dominance of hemipelagic facies during periods of elevated sea level in the middle Miocene and early Pliocene when depocentres were isolated from terrigenous sediment. Glauconite-rich facies were mobilized from an upper slope setting following these periods of elevated sea level and redeposited in a deep-marine environment. Pleistocene shoreline lithofacies display glacio-esutatic control of depositional environment by recording several cycles of nearshore to fluvial progressions. General models of accretionary prism behaviour and trench-slope basin evolution are compatible with the overall coarsening-upward lithofacies sequence filling the Humboldt Basin. Early structural barriers precluded deposition of terrigenous material except from locally derived debris flows; subsequent shoaling and burial of deactivated thrust-folds enabled turbidity flows to reach the basin floor. However, late-stage tectonism apparently controlled the onset of coarse-grained deposition in this sequence. Significant sand-rich turbidite deposition began in the middle Pliocene, synchronous with tectonic uplift of the southern basin margin. Conversely, cessation of turbidite deposition in the eastern basin area in latest Pliocene time was synchronous with growth of anticlinal structures which again blocked widespread dispersal of turbidity flows. This middle Pliocene to Holocene period of crustal shortening is synchronous with continued reduction in spreading rate along the southern Juan de Fuca ridge, and probably reflects partial coupling between the subducting lithosphere and the overlying accretionary prism.

California↗

USGS2003

The early Mesozoic Birdsboro central Atlantic margin basin in the Mid-Atlantic region, eastern United States

The early Mesozoic Birdsboro basin (new name) was a single, elongate depositional trough in the present Mid-Atlantic area of the eastern United States, extending north-eastward from central Virginia across Maryland, Pennsylvania, and New Jersey into southern New York. What now remains after erosion comprises the Barboursville, Culpeper, Gettysburg, and Newark remnants. Some 7?? km of late Triassic and early Jurassic continental sediments of varying provenances entered and spread across in the Birdsboro basin in several depositional environments. The five resulting sedimentary lithosomes include feldspathic sandstone, quartzose sandstone, red silty mudstone, gray shale, and fanglomerate. The extensive interbedding, intertonguing, and lateral gradation among these lithosomes suggest that they were contemporary and closely interrelated. The feldspathic sandstone lithosome contains sediment with a southeastern provenance that accumulated in a bajada environment extending the length of the southeastern side of the basin. Sediment in the quartzose sandstone lithosome had a northwestern provenance-the coarse-grained fraction formed regional alluvial fans at the mouths of four major input centers. The finer-grained fraction was deposited in the distal reaches of these fans and in the playa environments in the interfan areas; this fraction formed the red silty mudstone lithosome. Gray/black shales and argillites of the gray shale lithosome accumulated in lacustrine environments in the interfan areas. The fanglomerate lithosome comprises numerous small, lobate deposits of poorly sorted sediment along both basin margins. The location and time of activity of the northwest input centers largely determined the distribution and areal extent of the various depositional environments and consequent lithosome along the length and across the width of the basin. The Birdsboro basin was deformed (tilted, faulted, and folded) sometime after the deposition of the youngest preserved rocks (early Sinemurian). The deformation varied along the length of the basin, producing differences in the amount of tilting, structural elevation, and subsequent erosion. The present erosional remnants create the illusion of four originally separate depositional basins.

Geological Society of America Bulletin↗

USGS2003

Holocene evolution of the western Orinoco Delta, Venezuela

The pristine nature of the Orinoco Delta of eastern Venezuela provides unique opportunities to study the geologic processes and environments of a major tropical delta. Remote-sensing images, shallow cores, and radiocarbon-dating of organic remains form the basis for describing deltaic environments and interpreting the Holocene history of the delta. The Orinoco Delta can be subdivided into two major sectors. The southeast sector is dominated by the Rio Grande-the principal distributary-and complex networks of anastomosing fluvial and tidal channels. The abundance of siliciclastic deposits suggests that fluvial processes such as over-bank flooding strongly influence this part of the delta. In contrast, the northwest sector is represented by few major distributaries, and overbank sedimentation is less widespread relative to the southeast sector. Peat is abundant and occurs in herbaceous and forested swamps that are individually up to 200 km2 in area. Northwest-directed littoral currents transport large volumes of suspended sediment and produce prominent mudcapes along the northwest coast. Mapping of surface sediments, vegetation, and major landforms identified four principal geomorphic systems within the western delta plain: (1) distributary channels, (2) interdistributary flood basins, (3) fluvial-marine transitional environments, and (4) marine-influenced coastal environments. Coring and radiocarbon dating of deltaic deposits show that the northern delta shoreline has prograded 20-30 km during the late Holocene sea-level highstand. Progradation has been accomplished by a combination of distributary avulsion and mudcape progradation. This style of deltaic progradation differs markedly from other deltas such as the Mississippi where distributary avulsion leads to coastal land loss, rather than shoreline progradation. The key difference is that the Orinoco Delta coastal zone receives prodigious amounts of sediment from northwest-moving littoral currents that transport sediment from as far away as the Amazon system (???1600 km). Late Holocene progradation of the delta has decreased delta-plain gradients, increased water levels, and minimized over-bank flooding and siliciclastic sedimentation in the northwest sector. These conditions, coupled with large amounts of direct precipitation, have led to widespread peat accumulation in interdistributary basins. Because peat-forming environments cover up to 5000 km2 of the delta plain, the Orinoco may be an excellent analogue for interpreting ancient deltaic peat deposits.

Geological Society of America Bulletin↗

USGS2000

Spatial variation in fish assemblages across a beaver-influenced successional landscape

Beavers are increasingly viewed as “ecological engineers,” having broad effects on physical, chemical, and biological attributes of north-temperate landscapes. We examine the influence of both local successional processes associated with beaver activity and regional geomorphic boundaries on spatial variation in fish assemblages along the Kabetogama Peninsula in Voyageurs National Park, northern Minnesota, USA. Fish abundance and species richness exhibited considerable variation among drainages along the peninsula. Geological barriers to fish dispersal at outlets of some drainages has reduced fish abundance and species richness. Fish abundance and species richness also varied within drainages among local environments associated with beaver pond succession. Fish abundance was higher in upland ponds than in lowland ponds, collapsed ponds, or streams, whereas species richness was highest in collapsed ponds and streams. Cluster analyses based on fish abundance at sites classified according to successional environment indicated that four species (northern redbelly dace, Phoxinus eos ; brook stickleback, Culaea inconstans ; finescale dace, P. neogaeus ; and fathead minnow, Pimephales promelas ), were predominant in all successional environments. Several less abundant species were added in collapsed ponds and streams, with smaller size classes of large lake species (e.g., black crappie, Pomoxis nigromaculatus ; smallmouth bass, Micropertus dolomieui ; yellow perch, Perca flavescens ; and burbot, Lota lota ) being a component of these less abundant species. The addition of smaller size classes of large lake species indicates that dispersal of early life-history stages from Kabetogama Lake played a role in determining the species richness and composition of less abundant species in successional environments on the peninsula. Furthermore, collapsed-pond and stream environments closer to Kabetogama Lake had higher species richness than similar successional sites located farther from the lake. Cluster analyses based on fish abundance at sites classified according to drainage indicated that species composition among drainages was influenced both by the presence or absence of geological barriers to fish dispersal and the nonrandom distribution of collapsed ponds and streams. Based on these results, we present a hierarchical conceptual model suggesting how geomorphic boundaries and beaver pond succession interact to influence fish assemblage attributes. The presence of a productive and diverse fish assemblage in headwater streams of north-temperate areas requires the entire spatial and temporal mosaic of successional habitats associated with beaver activity, including those due to the creation and abandonment of beaver ponds. The ultimate impact of the local successional mosaic on fishes, however, will be strongly influenced by the regional geomorphic context in which the mosaic occurs.

Ecology↗

USGS2015

Geochemistry and occurrence of selenium: An overview

Selenium (Se) is both beneficial and toxic to animals, plants, and humans. Consequently, it is imperative to know its concentration in the environment and to understand the processes controlling its distribution. Determinations of Se concentrations in a variety of materials indicate that Se is widely distributed throughout the environment. The processes responsible for its distribution include volcanic activity, the burning of fossil fuels, the weathering of rocks and soils, groundwater transport, precipitation of minerals, adsorption, chemical or bacterial reduction and oxidation, and metabolic uptake and release by plants and animals. The importance of a particular process in controlling the distribution of Se is intimately linked to the speciation of Se, which is controlled by the pH and redox conditions of the environment. Selenium can exist as selenide (Se 2− ), elemental Se (Se 0 ), selenite (SeO 2− 3 ), and selenate (SeO 2− 4 ). Each oxidation state exhibits different chemical behavior. Selenide and elemental Se occur in acidic, reducing, and organic-rich environments. Metal selenides, Se-sulfides, and elemental Se are insoluble, and therefore biologically unavailable. For the pH and redox conditions of most soil and aquatic environments, SeO 2− 3 and SeO 2− 4 ; should be the dominant forms of Se. Selenite is immobilized by adsorption onto particles, particularly Fe oxyhydroxides. Selenate is highly mobile and biologically available because of the solubility of its salts and its weak adsorption by particles. Microbial action can change the speciation of Se through oxidation or reduction, or through the formation of organic Se compounds.

Book chapter↗

USGS1970

Water laws and concepts

Throughout human history various laws and customs have developed concerning the individual rights and rights in common to the waters of the earth. Many existing laws and concepts are clearly influenced by the environment in which they originated and reflect the relative abundance or scarcity of water. Many concepts reflect the people's original interests in the water and once established have been passed from generation to generation with little modification. Some laws and concepts have been carried by people in their migrations and colonial expansions to vastly different environments, with rather curious consequences. In many places water laws that had been well adapted to the natural environment have become less tenable because of man's activities in modifying that environment, or because of increasing use of water: Increasing consumptive use shifts the water economy toward lesser abundance or increasing deficiency; increasing nonconsumptive use results in pollution of the water resources, so that they become less suitable for other users. The water-rights systems in the United States vary from State to State: some are reasonably fitted to their environment, some have outlived their place in history, some are wasteful of water, some show favoritism to certain special interests or segments of the population. Water-use rights are universally recognized as real property, with constitutional protection against deprivation without due process of law.

Circular↗

USGS2009

Sidescan-Sonar Imagery and Surficial Geologic Interpretations of the Sea Floor in Western Rhode Island Sound

The U.S. Geological Survey (USGS) and National Oceanic and Atmospheric Administration (NOAA) have been working together to interpret sea-floor geology along the northeastern coast of the United States. In 2004, the NOAA Ship RUDE completed survey H11322, a sidescan-sonar and bathymetric survey that covers about 60 square kilometers of the sea floor in western Rhode Island Sound. This report interprets sidescan-sonar and bathymetric data from NOAA survey H11322 to delineate sea-floor features and sedimentary environments in the study area. Paleozoic bedrock and Cretaceous Coastal Plain sediments in Rhode Island Sound underlie Pleistocene glacial drift that affects the distribution of surficial Holocene marine and transgressional sediments. The study area has three bathymetric highs separated by a channel system. Features and patterns in the sidescan-sonar imagery include low, moderate, and high backscatter; sand waves; scarps; erosional outliers; boulders; trawl marks; and dredge spoils. Four sedimentary environments in the study area, based on backscatter and bathymetric features, include those characterized by erosion or nondeposition, coarse-grained bedload transport, sorting and reworking, and deposition. Environments characterized by erosion or nondeposition and coarse-grained bedload transport are located in shallower areas and environments characterized by deposition are located in deeper areas; environments characterized by sorting and reworking processes are generally located at moderate depths.

Open-File Report↗

USGS2010

The potential influence of changing climate on the persistence of salmonids of the inland west

The Earth's climate warmed steadily during the 20th century, and mean annual air temperatures are estimated to have increased by 0.6°C (Intergovernmental Panel on Climate Change, 2007). Although many cycles of warming and cooling have occurred in the past, the most recent warming period is unique in its rate and magnitude of change (Siegenthaler and others, 2005) and in its association with anthropogenic emissions of greenhouse gases (Intergovernmental Panel on Climate Change , 2007). The climate in the western United States warmed in concert with the global trend but at an accelerated rate (+0.8°C during the 20th century; Saunders and others, 2008). The region could also prove especially sensitive to future changes because the relatively small human population is growing rapidly, as are demands on limited water supplies. Regional hydrological patterns are dominated by seasonal snow accumulation at upper elevations. Most of the region is relatively dry, and both terrestrial and aquatic ecosystems are strongly constrained b y water availability (Barnett and others, 2008; Brown and others, 2008). Stream environments are dynamic and climatically extreme, and salmonid fishes are the dominant elements of the native biodiversity (McPhail and Lindsey, 1986; Waples and others, 2008). Salmonids have broad economic and ecologic importance, but a century of intensive water resource development, nonnative fish stocking, and land use has significantly reduced many populations and several taxa are now protected under the Endangered Species Act (Thurow and others, 1997; Trotter, 2008). Because salmonids require relatively pristine, cold water environments and are often isolated in headwater habitats, members of this group may be especially vulnerable to the effects of a warming climate (Keleher and Rahel, 1996; Rieman and others, 2007; Williams and others, 2009). Warming during the 20th century drove a series of environmental trends that have profound implications for many aspects of salmonid habitat, including disturbance regimes such as wildfire, and unfavorable changes to thermal and hydrologic properties of aquatic systems. Warmer air temperatures have been associated with decreased winter snow accumulations, have accelerated snowmelt, and have advanced the timing of peak runoff by several days to weeks across most of western North America (Stewart and others, 2005; Barnett and others, 2008). Less snow and earlier runoff decrease aquifer recharge, make less water available for groundwater inputs to streams, and are contributing to widespread decreases in summer low flows (Stewart and others, 2005; Rood and others, 2008; Luce and Holden 2009). Interannual variability in stream flow is increasing, as is the persistence of multi-year extreme conditions (McCabe and others, 2004; Pagano and Garen 2005). In many areas of western North America, flood risks have increased in association with warmer temperatures during the 20th century (Hamlet and Lettenmaier, 2005). Streams where midwinter temperatures are near freezing have proven especially sensitive to increased flooding because of associated transitional hydrological patterns (mixtures of rainfall and snowmelt) and propensity for occasional rain-on-snow events to rapidly melt winter snowpack and generate large floods (Hamlet and Lettenmaier, 2005). Stream temperatures in many areas are increasing (Peterson and Kitchell, 2001; Morrison and others, 2002; Bartholow, 2005; Kaushal and others, 2010), due to both air temperature increases and reduced summer flows that make streams more sensitive to warmer air temperatures (Isaak and others, 2010). In recent decades, wildfires have become more common across much of the western United States during periods of more frequent droughts (Westerling and others, 2006; Hoerling and Eischeid, 2007), and local stream temperature can increase in postfire environments (Gresswell, 1999; Dunham and others, 2007). Fire-related temperature increase within streams is commonly a transient phenomenon, lasting only until riparian vegetation has recovered (Gresswell, 1999); however, ongoing climate change could preclude recovery to higher stature, prefire vegetation types in some areas (McKenzie and others, 2004; van Mantgem and Stephenson, 2007), resulting in a loss of critical riparian shading. Additionally, when wildfires occur in steep mountain topographies, the vegetation that stabilize s soils on hillslopes is often killed and landslides become more prevalent (Gresswell, 1999). Landslides int o stream channels form debris flows composed of sediment slurries and dead trees that can scour channels to bedrock and further exacerbate stream heating, delay recovery of riparian areas, or extirpate fish populations (Gresswell, 1999; May and Gresswell, 2003; Dunham and others, 2007). Changes in stream environments will shift habitat distributions, sometimes unpredictably, in both time and space for many salmonid fishes. Water temperature fundamentally influences aquatic ecosystem health because distribution, reproduction, fitness, and survival of ectothermic organisms are inextricably linked to the thermal regime of the environment. Historically, research has focused on defining lethal thermal limits of salmonids (Eaton and others, 1995; Selong and others, 2001; Todd and others, 2008); however, water temperature is known to be important in biological processes at a variety of spatial scales and levels of biological organization (Rahel and Olden, 2008; McCullough and others, 2009). For instance, trout are affected directly by water temperature through feeding, metabolism, and growth rates, and indirectly by factors such as prey availability and species interactions (Wehrly and others, 2007; Rahel and Olden, 2008). Where cold water temperatures currently limit habitat suitability and distributions of some species (for example, at the highest and most northerly distributional extents; Nakano and others, 1996; Coleman and Fausch, 2007), a warming climate may gradually increase the quality and extent of suitable habitat. Over time, previously constrained populations are expected to expand into these new habitats and increase in number. Some evidence suggests this may already be happening in Alaska, where streams in recently deglaciated areas are being colonized by emigrants from nearby salmon and char populations (Milner and others, 2000). Unfortunately, many of the sensitive salmonid species that are often the focus of western managers are unlikely to benefit from future water temperature increases. Warmer stream temperatures will facilitate invasion by nonnative species that are broadly established in downstream areas into upstream areas where they will compete with native species (Rieman and others, 2006; Rahel and Olden, 2008; Fausch and others, 2009). In other cases, warmer stream temperatures will render thermally suitable habitats unsuitable in downstream areas and effect net losses of habitat because upstream distributions are often constrained by streams that are too small or steep (Hari and others, 2006; Isaak and others, 2010). Both scenarios are realistic for fish species like bull trout ( Salvelinus confluentus ) (Rieman and others, 2006; Rieman and others, 2007), the various subspecies of cutthroat trout ( Oncorhynchus clarkii ) (Williams and others, 2009), Gila trout ( Oncorhynchus gilae gilae ) (Kennedy and others, 2008), and Apache trout ( Oncorhynchus gilae apache ) (Rinne and Minckley, 1985; Carmichael and others, 1993). As native species are increasingly confined to smaller and more isolated habitats by a gradually warming climate, the effects of wildfires (whether related to lethal changes in water quality during a fire, channel debris flows, or chronic postfire warming ) could have greater proportional effects on remaining habitats (for example, Brown and others, 2001; Rieman and others, 2007). If these changes were accompanied by additional hydrologic alterations associated with changes to the magnitude, frequency, duration, timing, and rate of change of discharge patterns (Jager and others, 1999; Henderson and others, 2000), populations may begin to lose some of their historic resilience and become ever more susceptible to local extirpations. As dramatic and extensive as climatic and environmental trends are for salmonid habitats, global climate models (GCMs) project that many of these trends will continue and even accelerate until at least the middle of the 21st century (Intergovernmental Panel on Climate Change, 2007). Current projections suggest mean annual air temperatures will increase by an additional 1–3°C, and early indications are that climate trajectory is at the higher end of this range (Pittock, 2006; Raupach and others, 2007). Although predicted changes vary considerably, even the most conservative estimates suggest a warming rate that will be twice that observed during the 20th century. Projections for the midcentury are most certainly due to the effects of greenhouse gases already emitted or predicted in the short term, uncertainties of the effects of longer-term greenhouse gas emissions, short-term climate cycles, and process errors associated with climate models (Cox and Stephenson, 2007). Projections of changes in total precipitation are less certain than those for air temperatures, but most GCMs project relatively small changes in the Northwest, with the exception of slightly drier summer periods (Mote and others, 2008; Karl and others, 2009). In the Southwest, however, significant decreases (such as 15–30 percent ) are projected during most periods of the year, and this area is one of the few for which Intergovernmental Panel on Climate Change (2007) precipitation projections have a high level of certainty (Hoerling and Eischeid, 2007; Karl and others, 2009). Clearly, managers of native salmonids in the wester n United States should consider adjusting management strategies to accommodate a warmer and possibly drier future (Williams and others, 2009). Tools are needed to forecast where important changes may occur and how conservation efforts should be prioritized. In this Open-File Report, we document our initial efforts in this regard for 10 species and subspecies of inland trout and Montana Arctic grayling ( Thymallus arcticus ) across the western United States.

Arizona, California, Colorado, Idaho, Montana, Nev↗

USGS1976

Stratigraphy and petroleum possibilities of lower Upper Devonian (Frasnian and lower Famennian) strata, Southwestern Utah

The lower Upper Devonian rocks in southwestern Utah--the Guilmette Formation and equivalents--represent a final regressive pulse of the major Late Devonian marine inundation of the Western Interior of the United States and record marine carbonate deposition on a wide continental shelf. They consist primarily of limestone, dolomite, and quartz arenite deposited in a shallow north-trending miogeosyncline, which constituted a single major basin of accumulation on this shelf. The Guilmette Formation and equivalents were deposited in shallow normal to hypersaline marine waters. The environments of deposition include: a moderate- to high-energy intertidal environment, a moderate-energy subtidal environment, a lower energy, deeper subtidal environment below effective wave base, and a high-energy environment in local shallow areas of mud mounds and bioherms. The carbonate deposition of the Guilmette Formation and equivalents was interrupted periodically by the deposition of quartz arenites. These may represent the breaking up of the miogeosynclinal-cratonic pattern of deposition. In most areas, the Guilmette and equivalents are overlain by a thin transgressive marine quartz arenite deposit--the Cove Fort Quartzite and basal Leatham equivalent. Previous paleontologic evidence indicated a general Middle to Late Devonian age for the Guilmette Formation. The present study narrows this range and suggests that the age of the Guilmette Formation and its equivalents is late Middle Devonian (Stringocephalus brachiopod zone) to early Late Devonian (Uppermost Palmatolepis gigas conodont zone). Available subsurface data suggest that the petroleum possibilities of the Guilmette Formation and equivalents in southwestern Utah are poor. Several tests have penetrated .the interval with only minor shows of oil in rocks with low porosity and permeability. Nevertheless, many outcrop samples of the same interval, appear to have excellent porosity and permeability and a strongly fetid odor,

Utah↗

USGS1999

Selected elements and organic chemicals in bed sediment and fish tissue of the Tualatin River basin, Oregon, 1992-96

A variety of elements and organic compounds have entered the environment as a result of human activities. Such substances find their way to aquatic sediments from direct discharges to waterways, atmospheric emissions, and runoff. Some of these chemicals are known to harm fish or wildlife, either by direct toxicity, by reducing viability, or by limiting reproductive success. In aquatic systems, sediments become the eventual sink for most of these chemicals. Analyzing the sediments provides a first step in a chemical inventory that can lead to an assessment of potential biological impacts (Kennicutt and others, 1994). Many elements (iron, aluminum, calcium, and others) enter the environment from the natural weathering of rock. Additional amounts of elements have been contributed by human activities such as mining, metals production and processing, fossil fuel combustion, municipal waste incineration, and transportationrelated sources. The environmental presence of some elements, such as lead and mercury, is almost entirely due to human activity. Lead is often associated with the use of leaded gasoline and from the manufacture and disposal of lead storage batteries. Mercury was used historically in a variety of industrial processes and as a pesticide. Nriagu and Pacyna (1998) concluded that human activity is the “most important element in the global biogeochemical cycling of the trace metals.” The number of organic compounds in existence and their total production has more than tripled in the last century. Many of these compounds enter the environment directly as pesticides; others are inadvertently discharged. Some organic compounds have natural sources. Three general classes of organic compounds will be discussed: organochlorine compounds, polyaromatic hydrocarbons, and phthalates. Almost all organochlorine compounds are manmade. Many are pesticides that were used widely in the 1950s–60s (DDT and chlordanes, for example). Use of most organochlorine pesticides was restricted or banned in the United States in the 1970s–80s. Polychlorinated biphenyls (PCBs) are also organochlorine compounds; they were used for a variety of applications, but most commonly as insulators in electrical transformers and other equipment. In general, organochlorine compounds degrade very slowly in the environment and therefore, are routinely found in environmental samples, despite the fact that they are no longer used in the United States. They are hydrophobic that is they do not dissolve readily in water and, in aquatic systems, are almost exclusively associated with sediments or tissue. Because these compounds cause a variety of adverse health effects in wildlife, the U.S. Environmental Protection Agency (USEPA) has listed many as priority pollutants. Organochlorine compounds also have been implicated as endocrine disrupters— chemicals that can interfere with the normal function of hormones. Polyaromatic hydrocarbons (PAHs) are found in sediments throughout the world (Hites and others, 1980). Their presence is thought to be primarily anthropogenic. PAHs occur naturally in petroleum products and also are produced during combustion. They enter the environment from fuel spills, tar coatings, coal and other fossil fuel usage, road dust, and from the atmospheric deposition of combustion products (Prahl and others, 1984; Wakeham and others, 1980). Urban areas often have high concentrations of PAHs because of transportation-related sources (vehicle exhaust, paving materials, and releases of fuel or oil). Natural sources, such as forest fires, may contribute small amounts of PAHs. Several PAHs are known carcinogens (benzo[a]pyrene, for example); 16 are listed as USEPA priority pollutants. Phthalate compounds are often associated with urban areas. They are used in a wide variety of industrial applications and in inks, adhesives, resins, and as plasticizers (chemicals that increase the flexibility of plastics). In aquatic systems, phthalates are found mostly in sediments where they degrade very slowly. Phthalates are thought to be endocrine disrupters; Jobling and others (1995) found that some phthalates were weakly estrogenic. USEPA considers some phthalates to be possible carcinogens. This report describes the results of a reconnaissance survey of elements and organic compounds found in bed sediment and fish tissue in streams of the Tualatin River Basin. The basin is in northwestern Oregon to the west of the Portland metropolitan area (fig. 1). The Tualatin River flows for about 80 miles, draining an area of about 712 square miles, before it enters the Willamette River. Land use in the basin changes from mostly forested in the headwaters, to mixed forest and agriculture, to predominately urban. The basin supports a growing population of more than 350,000 people, most of whom live in lower parts of the basin. Water quality in the Tualatin River and its tributaries is expected to be affected by the increasing urbanization of the basin.

Oregon↗

USGS2020

Antibiotic resistant bacteria in wildlife: Perspectives on trends, acquisitions and dissemination, data gaps, and future directions

The proliferation of antibiotic resistant bacteria in the environment has potential negative economic and health consequences. Thus, previous investigations have targeted wild animals to understand the occurrence of antibiotic resistance in diverse environmental sources. In this critical review and synthesis, we summarize important concepts learned through the sampling of wildlife for antibiotic resistant indicator bacteria. These concepts are helpful for understanding dissemination of resistance through environmental pathways and helping to guide future research efforts. Our review is comprised of six sections. The first section briefly introduces antibiotic resistance as it pertains to bacteria harbored in environmental sources such as wild animals. Next, we differentiate wildlife from other animals in the context of how diverse taxa provide different information on antibiotic resistance in the environment. In the third section, we identify representative research and seminal works that illustrate important associations between the occurrence of antibiotic resistant bacteria in wildlife and anthropogenic inputs into the environment. For example, we highlight numerous investigations that support the premise that anthropogenic inputs into the environment drive the occurrence of antibiotic resistance in bacteria harbored by free-ranging wildlife. Additionally, we summarize previous research demonstrating foraging as a mechanism by which wildlife may be exposed to anthropogenic antibiotic resistance contamination in the environment. In the fourth section of our review, we summarize molecular evidence for the acquisition and dissemination of resistance among bacteria harbored by wildlife. In the fifth section, we identify what we believe to be important data gaps and potential future directions that other researchers may find useful towards the development of efficient, informative, and impactful investigations of antibiotic resistant bacteria in wildlife. Finally, we conclude our review by highlighting the need to move from surveys that simply identify antibiotic resistant bacteria in wildlife towards hypothesis-driven investigations that: (1) identify point sources of antibiotic resistance; (2) provide information on risk to human and animal health; (3) identify interventions that may interrupt environmentally mediated pathways of antibiotic resistance acquisition/transmission; and (4) evaluate whether management practices are leading to desirable outcomes.

Journal of Wildlife Diseases↗

USGS1978

Pressure gradients and boiling as mechanisms for localizing ore in porphyry systems

Fluid inclusions in ore zones of porphyry systems indicate that extensive boiling of hydrothermal fluids accompanies deposition of ore and gangue minerals. The boiling commonly accompanied a change from a lithostatic to a hydrostatic environment during evolution of an epizonal stock. Pressure gradients near the margin of the stock can determine whether ore or only a diffuse zone of mineralization is formed. A sharp drop in pressure in an epizonal environment is more likely to cause extensive boiling than a comparable change in a deeper environment, as the slope of the boiling curve steepens with an increase 'in pressure. The drop in pressure causes the hydrothermal fluids to boil and creates a crackle (stockwork) breccia, which hosts the veinlets of gangue quartz and ore minerals. The boiling selectively partitions CO 2 , H 2 S, and HCl into the vapor phase, changing the pH, composition, ionic strength, and thus the solubility product of metal complexes in the remaining liquid and causing the ore and gangue to come out of solution. Fluid inclusions trapped from boiling solutions can exhibit several forms, depending on the physical and chemical conditions of the hydrothermal fluid from which they were trapped. In one case, inclusions when heated can homogenize to either liquid or vapor at the same temperature, which is the true boiling temperature. In another case, homogenization of various inclusions can occur through a range of temperatures. The latter case results from the trapping of mixture of liquid and vapor. Variations in salinity can result from boiling of the hydrothermal fluid, or intermittent incorporation of high-salinity fluids from the magma, or trapping of fluids of varying densities at pressure-temperature conditions above the critical point of the fluid. In places, paleopressure-temperature transition zones can be recognized by fluid-inclusion homogenization temperatures and phase relationships and by the presence of anhydrite daughter minerals. Boiling of a hydrothermal fluid in the porphyry environment affects light stable isotopes. Hydrogen is preferentially fractionated into the vapor phase from water boiling below 223°C; above this temperature deuterium is selectively enriched in the vapor phase. In certain environments boiling creates a vapor-dominated system in which the condensate is swept away by meteoric waters and the H/D in the residual fluids is progressively increased through time.

Utah↗

USGS2019

Quantifying changes to infaunal communities associated with several deep-sea coral habitats in the Gulf of Mexico and their potential recovery from the DWH oil spill

Extensive information is available about infaunal soft-sediment communities in the Gulf of Mexico (Gulf) (Pequegnat et al. 1990, Rowe and Kennicutt II 2009, Wei et al. 2010), particularly from the large-scale sampling effort of the Deep Gulf of Mexico Benthos (DGOMB) project in the early 2000s (Rowe and Kennicutt II 2009). Infaunal soft-sediment communities in the northern Gulf differ by geographic location and depth (Rowe and Kennicutt II 2009, Wei et al. 2010). Density decreases with depth, while taxa diversity exhibits a mid-depth (1,100-1,300 m) maximum (Rowe and Kennicutt II 2009). Community composition is influenced by both geographic location and depth, with zones (as defined by Wei et al. 2010) encompassing specific depth ranges, ranging from 635 to 3,314 m, and separated into east and west components. These zones were correlated to detrital particulate organic carbon (POC) export flux, primarily from the Mississippi River (Wei et al. 2010), where POC flux decreases with depth (Biggs et al. 2008). The flux of POC has also been found to be higher in the northeast Gulf than the northwest (Biggs et al. 2008), and consequently, biomass of infaunal communities is positively correlated with sedimentorganic carbon content (Morse and Beazley 2008). Most of the deep Gulf is composed of soft-sediment environments, but the relative flat seafloor is punctuated in areas with other heterogeneous habitats, including chemosynthetic environments and deepsea coral habitats. Deep-sea corals create a complex three-dimensional structure that enhances local biodiversity, supporting diverse and abundant fish and invertebrate communities (Mortensen et al. 1995, Costello et al. 2005, Henry and Roberts 2007, Ross and Quattrini 2007, Buhl-Mortensen et al. 2010). In recent years, knowledge of the sphere of influence of deep-sea corals has expanded, with evidence that coral habitats also influence surrounding sediments (Mienis et al. 2012, Demopoulos et al. 2014, Fisher et al. 2014, Demopoulos et al. 2016, Bourque and Demopoulos 2018). Deep-sea corals are capable of altering their associated biotic and abiotic environment, thus serving as ecosystem engineers (e.g., Jones et al. 1994). The depositional environment and associated hydrodynamic regime around coral habitats differ from the extensive expanses of soft-sediments that dominate the sea floor (e.g., Mienis et al. 2009a. 2009a, Mienis et al. 2009b, Mienis et al. 2012), with the three-dimensional structure of the coral causing turbulent flows that enhance sediment accumulation adjacent to coral structures. In the northern Gulf, deep-sea corals generally occur on mounds of authigenic carbonate (Schroeder 2002) where elevation above the benthic boundary layer into higher velocity laminar flows allows for increased availability of food resources (Buhl-Mortensen and Mortensen 2005). The different hydrodynamics around corals likely affects the sediment geochemistry and in turn infaunal community structure and function (Demopoulos et al. 2014). Ecosystem-based research on Gulf infaunal communities has primarily focused on soft-sediment environments. Initial research on deep-sea coral-associated infaunal communities focused on Lophelia pertusa (e.g., Demopoulos et al. 2014), and more recent studies focused on octocorals (Fisher et al. 2014, Demopoulos et al. 2016, Bourque and Demopoulos 2018) and comparisons among coral habitat types (Bourque and Demopoulos 2018). Coral-adjacent sediment communities are distinctly different from nearby background soft-sediment (Demopoulos et al. 2014, Bourque and Demopoulos 2018), with a sphere of influence estimated to be between 14 and 100 m (Demopoulos et al. 2014, Bourque and Demopoulos 2018). The coral type (e.g., L. pertusa, Madrepora oculata, octocorals) also influences sediment communities, with L. pertusa habitats distinct from both M. oculata and octocoral habitats (Bourque and Demopoulos 2018). Differences among coral communities are influenced by depth,

Gulf of Mexico↗