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Construction details and operation of a respirometer with capabilities for controlling the oxygen level at preselected levels is described. The interaction of an oxygen sensor and electronic switch energizes an electrolysis cell which replenishes oxygen used by a test organism. Respiration rate of any aquatic or semiaquatic organism may be determined by this apparatus.
The spleen and head kidney of striped bass Morone saxatilis were examined by electron microscopy, including examination of ultrastructural localization of peroxidase. The spleen is composed of a loosely organized reticulum that supports the red and white pulp. The principal hematopoietic and mature blood cells observed were erythrocytes, erythroblasts, lymphocytes, macrophages, thrombocytes, and aggregates of pigmented macrophages. In addition, limited numbers of neutrophils, neutrophilic myelocytes (immature neutrophils), plasma cells, eosinophils and monocytes were identified. Reticular cells and fibers appeared to provide a structural framework for both cells and blood sinuses in the spleen. Like the spleen, the head kidney contained erythrocytes, macrophages, monocytes, lymphocytes, and other less frequently observed cell types. A distinct difference in the cytologic composition of the two organs, however, was in the greater number of neutrophilic myelocytes found in the head kidney, where these cells were often arranged in groups. Positive peroxidase reactions were observed for neutrophils, neutrophilic myelocytes, macrophage phagolysosomes, and pigmented macrophages in both the spleen and head kidney.
Because infection with Ichthyophthirius multifiliis has been reported to result in osmotic stress, genesis of the plasma chloride and chloride cell response of channel catfish Ictalurus punctatus to the infection was studied from day 0 to day 7 postexposure (PE). Parasite population densities ranged from 0.08 to 0.22 trophonts per gill filament during days 1–5 PE and increased to 2.1 at day 7 PE. Population increases were the result of infection by a new generation of infective theronts and reproduction by the parasite on the host. Mean plasma chloride concentrations of fish were not significantly different among days 0–5 PE (range of means, 93.01–97.87 meq/L), but by day 7 PE the mean had declined significantly, to 83.73 meq/L. Maintenance of relatively stable plasma chloride concentrations for 5 d was associated with chloride cell proliferation. The number of interlamellar filament chloride cells had significantly increased by day 1 PE, and the number of chloride cells in the lamellae had significantly increased by day 5 PE. No further increase had occurred by day 7 PE. Vacuolization of chloride cells, examined by electron microscopy, became more common as infection progressed, and many chloride cells appeared to be degenerating by day 5 PE.
Five lots of commercially purchased juvenile rainbow trout Oncorhynchus mykiss (17–44 g) stocked in a continuous-production water recirculation system became infested with gill amoebae. The amoebae were introduced into the recirculation system, as evidenced by their presence on gills of fish held in quarantine tanks. Based on their morphology, as seen in histological sections and by electron microscopy, the amoebae appeared to be more closely related to the family Cochliopodiidae than to other taxa of free-living amoebae. Attempts to culture the amoebae in different media, at different temperatures of incubation, and in fish cell culture were not successful. Initial treatment of the recirculation system with formalin at 167 parts per million (ppm) for 1 h eliminated amoebae from the gills. Subsequent treatments of the entire system with formalin at 50–167 ppm reduced the intensity of further infestations.
The vectors involved in the spread of whirling disease, which is caused by Myxobolus cerebralis, are only partly understood. However, the parasite has rapidly become established in many regions, suggesting that it is easily disseminated. We gained insight into transport vectors by examining the surface porosity of common wading equipment materials and the adherence of M. cerebralis myxospores to them. Interstitial spaces within rubber, felt, lightweight nylon, and neoprene were measured on scanning electron microscope images. Myxospores were applied to each material, the material was rinsed, and the myxospores recovered to assess adherence. The mean interstitial space size of rubber was the smallest (2.0 ??m), whereas that of felt was the largest (31.3 ??m). The highest recovery rates were from rubber and the glass control. Percent myxospore recovery varied by material, the recovery from felt being lower than that from all other materials. The potential for felt to carry even small numbers of myxospores suggests that the introduction of M. cerebralis by felt-soled wading boots is possible. ?? Copyright by the American Fisheries Society 2008.
Our goal was to understand movement and its interaction with survival for populations of stream salmonids at long-term study sites in the northeastern United States by employing passive integrated transponder (PIT) tags and associated technology. Although our PIT tag antenna arrays spanned the stream channel (at most flows) and were continuously operated, we are aware that aspects of fish behavior, environmental characteristics, and electronic limitations influenced our ability to detect 100% of the emigration from our stream site. Therefore, we required antenna efficiency estimates to adjust observed emigration rates. We obtained such estimates by testing a full-scale physical model of our PIT tag antenna array in a laboratory setting. From the physical model, we developed a statistical model that we used to predict efficiency in the field. The factors most important for predicting efficiency were external radio frequency signal and tag type. For most sampling intervals, there was concordance between the predicted and observed efficiencies, which allowed us to estimate the true emigration rate for our field populations of tagged salmonids. One caveat is that the model's utility may depend on its ability to characterize external radio frequency signals accurately. Another important consideration is the trade-off between the volume of data necessary to model efficiency accurately and the difficulty of storing and manipulating large amounts of data.
Previously published studies of the age estimation of channel catfish Ictalurus punctatus based on otoliths have reported using the sagittae, whereas it is likely they were actually using the lapilli. This confusion may have resulted because in catfishes (ostariophyseans) the lapilli are the largest of the three otoliths, whereas in nonostariophysean fish the sagittae are the largest. Based on (1) scanning electron microscope microphotographs of channel catfish otoliths, (2) X-ray computed tomography scans of a channel catfish head, (3) descriptions of techniques used to removed otoliths from channel catfish reported in the literature, and (4) a sample of channel catfish otoliths received from fisheries biologists from around the country, it is clear that lapilli are most often used for channel catfish aging studies, not sagittae, as has been previously reported. Fisheries scientists who obtain otoliths from channel catfish can use the information in this paper to correctly identify otolith age.
Microdissection and transverse semithin sections were used to perform a light microscopy survey of the gross morphology and cellular anatomy of the alimentary canal, respectively, of Lygus hesperus Knight, a key pest of cotton (Gossypium hirsutum L.), alfalfa (Medicago sativa L.), and other crops. The gross morphology of the alimentary canal showed a relatively unadorned tube compared with other hemipterans, with variably shaped compartments and one small diverticulum. However, the epithelial cell anatomy of the gut was relatively complex, with the midgut having the most diverse structure and cell types. The midgut was typical of the "Lygus-type gut" seen in the older literature, i.e., it consisted of three major regions, the first (descending), second (ascending), and third (descending) ventriculi, with different variants of three major epithelial cell types in each region. Our light microscopy (LM) study suggests that the three cell types are nondifferentiated regenerative cells (which sparsely occurred throughout the midgut but were abundant in the anterior region of the first ventriculus), endocrine cells, and columnar cells. Although the Lygus gut cells strongly resemble those cell types seen in other insects, their identification should be confirmed via transmission electron microscopy to be considered definitive. These cell types differed in the size and opacity of vesicles, geometry of cell surface in the gut lumen, and size, shape, and concentration of brush-border microvilli and location within the gut. Comparison of gut structure in L. hesperus with that of other hemipterans, especially in relation to hemipteran phylogeny and feeding strategies, is discussed.
The need for coordinated regional and global electronic databases to assist prevention, early detection, rapid response, and control of biological invasions is well accepted. The Pacific Basin Information Node (PBIN), a node of the National Biological Information Infrastructure, has been increasingly engaged in the invasive species enterprise since its establishment in 2001. Since this time, PBIN has sought to support frontline efforts at combating invasions, through working with stakeholders in conservation, agriculture, forestry, health, and commerce to support joint information needs. Although initial emphasis has been on Hawaii, cooperative work with other Pacific islands and countries of the Pacific Rim is already underway and planned.
Nonprofit scientific societies hope that their activities advance their particular mission and impact their profession and, in the broadest sense, humanity in positive ways. The digital age has provided unprecedented mechanisms to enhance the delivery of science to the world. The marketplace of scientific publishing is a rapidly shifting mosaic of challenges and opportunities, and the responses of nonprofit and commercial publishers vary widely, but their outcomes are still uncertain. The response of the American Society of Mammalogists (ASM) provides an example of how a relatively small society has altered its scientific delivery to enhance member benefits while attempting to sustain its economic viability. Since 2000, ASM has moved from a self-publishing, break-even, print-only model to a copublishing agreement with a commercial publisher (Alliance Communications Group, a division of Allen Press, Inc., Lawrence, Kansas), which now offers members various print and electronic options and generates a shared royalty. Although it is too early to gauge the economic impact of these changes, the ASM leadership clearly attempted to signal its desire for members to view their society as a package of opportunities for edification and involvement rather than just a provider of serial subscriptions. Future challenges facing nonprofit scientific societies include open access, fiscal realities, archiving of publications, and scientific and societal impact; future opportunities include a strengthening of member responsibilities and professionalism, development of data registries to enhance scientific progress, and bundling of like societies. The manner in which nonprofit scientific societies respond to these challenges and opportunities will no doubt affect their sustainability and future impact. ?? 2007 American Society of Mammalogists.
Quantifying incubation patterns has often involved long observation periods in the field, video cameras, or the use of other electronic devices that sometimes require the partial destruction of clutches and insertion of artificial eggs. In this study, we used an inexpensive, nondestructive method involving temperature probes combined with data loggers to examine the incubation rhythm of female Black-throated Blue Warblers ( Dendroica caerulescens ). The method provided detailed records of on–off patterns for females for selected 24-h periods during incubation. Female warblers spent an average (±SE) of 64.0% of daylight hours incubating in bouts lasting 20.5 ± 1.5 min and made 2.4 ± 0.1 departures from the nest/h on trips that lasted 10.6 ± 0.7 min. Incubation bouts were longer and females spent more time incubating per hour in the mornings and late afternoons than at mid-day. Older females had longer incubation bouts and tended to have shorter incubation periods than did yearling females, suggesting that experienced individuals were more effective incubators. Because of its ease of use and because nests with probes were not depredated at a higher rate than controls, we suggest that the temperature probe/data logger method is an efficient and effective way to quantify incubation rhythms for open-cup nesting birds.
We provide a map of lower and central Taylor Valley, Antarctica, that shows deposits from Taylor Glacier, local alpine glaciers, and grounded ice in the Ross Embayment. From our electronic database, which includes 153 sites from the coast 50 km upvalley to Pearse Valley, we show the distribution of permafrost type and soil subgroups according to Soil Taxonomy. Soils in eastern Taylor Valley are of late Pleistocene age, cryoturbated due to the presence of ground ice or ice-cemented permafrost within 70 cm of the surface, and classified as Glacic and Typic Haploturbels. In central Taylor Valley, soils are dominantly Typic Anhyorthels of mid-Pleistocene age that have dry-frozen permafrost within the upper 70 cm. Salt-enriched soils (Salic Anhyorthels and Petrosalic Anhyorthels) are of limited extent in Taylor Valley and occur primarily on drifts of early Pleistocene and Pliocene age. Soils are less developed in Taylor Valley than in nearby Wright Valley, because of lesser salt input from atmospheric deposition and salt weathering. Ice-cemented permafrost is ubiquitous on Ross Sea, pre-Ross Sea, and Bonney drifts that occur within 28 km of the McMurdo coast. In contrast, dry-frozen permafrost is prevalent on older (???115 ky) surfaces to the west. ?? 2008 Regents of the University of Colorado.
Most instruments used in seismological practice to record ground motion are pendulum seismographs, velocigraphs, or accelerographs. In most cases it is assumed that seismic instruments are only sensitive to the translational motion of the instrument's base. In this study the full equation of pendulum motion, including the inputs of rotations and tilts, is considered. It is shown that tilting the accelerograph's base can severely impact its response to the ground motion. The method of tilt evaluation using uncorrected strong-motion accelerograms was first suggested by Graizer (1989), and later tested in several laboratory experiments with different strong-motion instruments. The method is based on the difference in the tilt sensitivity of the horizontal and vertical pendulums. The method was applied to many of the strongest records of the Mw 6.7 Northridge earthquake of 1994. Examples are shown when relatively large tilts of up to a few degrees occurred during strong earthquake ground motion. Residual tilt extracted from the strong-motion record at the Pacoima Dam-Upper Left Abutment reached 3.1?? in N45??E direction, and was a result of local earthquake-induced tilting due to high-amplitude shaking. This value is in agreement with the residual tilt measured by using electronic level a few days after the earthquake. The method was applied to the building records from the Northridge earthquake. According to the estimates, residual tilt reached 2.6?? on the ground floor of the 12-story Hotel in Ventura. Processing of most of the strongest records of the Northridge earthquake shows that tilts, if happened, were within the error of the method, or less than about 0.5??.
Of all the filters applied to recordings of seismic waves, which include source, path, and site effects, the one we know most precisely is the instrument filter. Therefore, it behooves seismologists to accurately remove the effect of the instrument from raw seismograms. Applying instrument corrections allows analysis of the seismogram in terms of physical units (e.g., displacement or particle velocity of the Earth’s surface) instead of the output of the instrument (e.g., digital counts). The instrument correction can be considered the most fundamental processing step in seismology since it relates the raw data to an observable quantity of interest to seismologists. Complicating matters is the fact that, in practice, the term “instrument correction” refers to more than simply the seismometer. The instrument correction compensates for the complete recording system including the seismometer, telemetry, digitizer, and any anti‐alias filters. Knowledge of all these components is necessary to perform an accurate instrument correction. The subject of instrument corrections has been covered extensively in the literature (Seidl, 1980; Scherbaum, 1996). However, the prospect of applying instrument corrections still evokes angst among many seismologists—the authors of this paper included. There may be several reasons for this. For instance, the seminal paper by Seidl (1980) exists in a journal that is not currently available in electronic format and cannot be accessed online. Also, a standard method for applying instrument corrections involves the programs TRANSFER and EVALRESP in the Seismic Analysis Code (SAC) package (Goldstein et al. , 2003). The exact mathematical methods implemented in these codes are not thoroughly described in the documentation accompanying SAC.
Earthquakes are complex events that involve a myriad of interactions among multiple geologic features and processes. One of the tools that is available to assist with their study is computer simulation, particularly dynamic rupture simulation. A dynamic rupture simulation is a numerical model of the physical processes that occur during an earthquake. Starting with the fault geometry, friction constitutive law, initial stress conditions, and assumptions about the condition and response of the near‐fault rocks, a dynamic earthquake rupture simulation calculates the evolution of fault slip and stress over time as part of the elastodynamic numerical solution (Ⓔ see the simulation description in the electronic supplement to this article). The complexity of the computations in a dynamic rupture simulation make it challenging to verify that the computer code is operating as intended, because there are no exact analytic solutions against which these codes’ results can be directly compared. One approach for checking if dynamic rupture computer codes are working satisfactorily is to compare each code’s results with the results of other dynamic rupture codes running the same earthquake simulation benchmark. To perform such a comparison consistently, it is necessary to have quantitative metrics. In this paper, we present a new method for quantitatively comparing the results of dynamic earthquake rupture computer simulation codes.
A modest but noteworthy M w 5.9 earthquake occurred in the Bay of Bengal beneath the central Bengal fan at 21:51 Indian Standard Time (16:21 UTC) on 21 May 2014. Centered over 300 km from the eastern coastline of India (Fig. 1), it caused modest damage by virtue of its location and magnitude. However, shaking was very widely felt in parts of eastern India where earthquakes are uncommon. Media outlets reported as many as four fatalities. Although most deaths were blamed on heart attacks, the death of one woman was attributed by different sources to either a roof collapse or a stampede (see Table S1, available in the electronic supplement to this article). Across the state of Odisha, as many as 250 people were injured (see Table S1), most after jumping from balconies or terraces. Light damage was reported from a number of towns on coastal deltaic sediments, including collapsed walls and damage to pukka and thatched dwellings. Shaking was felt well inland into east‐central India and was perceptible in multistoried buildings as far as Chennai, Delhi, and Jaipur at distances of ≈1600  km (Table 1).
The Albuquerque Seismological Laboratory (ASL) has preserved a collection of photographs of seismographic equipment, stations, and drawings used by the United States Coast and Geodetic Survey (USC&GS) in the early-to-mid-twentieth century. The photographs were transferred to ASL from the US Department of Commerce building in Washington DC after ASL became established as a USC&GS facility for seismological research and instrumentation testing in 1961. The photographs were variously used in publications to document USC&GS activities or used internally to document instrument installation, operation, and/or components. The historic photograph collection is made up of hundreds of photographs that were originally printed in the 1930s and 1940s. Our hope is that the archival of these records, as well as brief descriptions about their significance, will help preserve some of the knowledge about seismological advances in the United States during this time period. We provide digital scans of the complete ASL historic photo collection and discuss the historical context of select images in the Electronic Supplement of this document.
Modern seismic data are collected, distributed, and analyzed using digital formats, and this has become a standard for the field. Although most modern seismometers still make use of analog electronic circuits, their data are converted from an analog voltage output to time‐tagged counts by way of digitization. Although much of the digitization process is not complicated to conceptualize, there is a fair bit of jargon in digitizer specifications, and a few pitfalls that can arise in the processes of recording and analyzing ground‐motion data. In this article, we review some of the fundamental physical properties of data acquisition systems and the basic steps in digitizing data from an analog instrument (specifically a seismometer). We then briefly discuss the digitization process and some of the key properties needed to make these data useful for seismological applications. Finally, we discuss some of the filtering processes that naturally arise from digitization and how it can affect the processing workflow. The end goal is to provide a user guide that will enable seismologists to have a working knowledge of the digitization process. We focus on aspects central to seismological applications and have tried to avoid getting bogged down in signal processing formalism.