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At least 1,027 records · Page 57Linked to original sources
USGS2011

Water quality and amphibian health in the Big Bend region of the Rio Grande Basin

Male and female Rio Grande leopard frogs (Rana berlandieri) were collected in May 2005 from the main stem and tributaries of the Rio Grande in the Big Bend region of Texas. Frogs were examined for (1) incidence of testicular ovarian follicles in males; (2) thyroid epithelial cell height, a potential index of exposure to thyroid-disrupting contaminants; and (3) incidence of liver melanomacrophage aggregates, a general index of exposure to contaminants. Standard parameters of surface water quality and concentrations of selected elements, including heavy metals, were determined at each frog collection site. Heavy metals also were measured in whole-frog composite extracts. Water cadmium concentrations in most sites and chloride concentrations in the main stem exceeded federal criteria for freshwater aquatic life. Mercury was detected in frogs from the two collection sites in Terlingua Creek. There was a seventeen percent incidence of testicular ovarian follicles in male frogs. Mean thyroid epithelial cell height was greater in frogs from one of the Terlingua Creek sites (Terlingua Abajo). No differences were observed in the incidence of hepatic macrophage aggregates among sites. In conclusion, although potential cause-effect relationships between indices of habitat quality and amphibian health could not be established, the results of this study raise concerns about the general quality of the aquatic habitat and the potential long-term consequences to the aquatic biota of the Big Bend region. The presence of ovarian follicles in male frogs is noteworthy but further study is necessary to determine whether this phenomenon is natural or anthropogenically induced.

Texas Journal of Science↗
USGS2014

Identification of evolutionary hotspots based on genetic data from multiple terrestrial and aquatic taxa and gap analysis of hotspots in protected lands encompassed by the South Atlantic Landscape Conservation Cooperative.

The southeastern United States is a recognized hotspot of biodiversity for a variety of aquatic taxa, including fish, amphibians, and mollusks. Unfortunately, the great diversity of the area is accompanied by a large proportion of species at risk of extinction . Gap analysis was employed to assess the representation of evolutionary hotspots in protected lands w h ere an evolutionary hotspot was defined as an area with high evolutionary potential and measured by atypical patterns of genetic divergence, genetic diversity, and to a lesser extent genetic similarity across multiple terrestrial or aquatic taxa. A survey of the primary literature produced 16 terrestrial and 14 aquatic genetic datasets for estimation of genetic divergence and diversity. Relative genetic diversity and divergence values for each terrestrial and aquatic dataset were used for interpolation of multispecies genetic surfaces and subsequent visualization using ArcGIS. The multispecies surfaces interpolated from relative divergences and diversity data identified numerous evolutionary hotspots for both terrestrial and aquatic taxa , many of which were afforded some current protection. For instance, 14% of the cells identified as hotspots of aquatic diversity were encompassed by currently protected areas. Additionally, 25% of the highest 1% of terrestrial diversity cells were afforded some level of protection. In contrast, areas of high and low divergence among species, and areas of high variance in diversity were poorly represented in the protected lands. Of particular interest were two areas that were consistently identified by several different measures as important from a conservation perspective. These included an area encompassing the panhandle of Florida and southern Georgia near the Apalachicola National Forest (displaying varying levels of genetic divergence and greater than average levels of genetic diversity) and a large portion of the coastal regions of North and South Carolina (displaying low genetic divergence and greater than average levels of genetic diversity) . Our results show the utility o f genetic data sets for identifying cross - species patterns of genetic diversity and divergence (i.e., evolutionary hotspots) in aquatic and terrestrial environments for use in conservation design and delivery across the southeastern United States.

Alabama, Florida, Georgia, North Carolina, South C↗
USGS2006

Use of models to map potential capture of surface water

The effects of ground-water withdrawals on surface-water resources and riparian vegetation have become important considerations in water-availability studies. Ground water withdrawn by a well initially comes from storage around the well, but with time can eventually increase inflow to the aquifer and (or) decrease natural outflow from the aquifer. This increased inflow and decreased outflow is referred to as “capture.” For a given time, capture can be expressed as a fraction of withdrawal rate that is accounted for as increased rates of inflow and decreased rates of outflow. The time frames over which capture might occur at different locations commonly are not well understood by resource managers. A ground-water model, however, can be used to map potential capture for areas and times of interest. The maps can help managers visualize the possible timing of capture over large regions. The first step in the procedure to map potential capture is to run a ground-water model in steady-state mode without withdrawals to establish baseline total flow rates at all sources and sinks. The next step is to select a time frame and appropriate withdrawal rate for computing capture. For regional aquifers, time frames of decades to centuries may be appropriate. The model is then run repeatedly in transient mode, each run with one well in a different model cell in an area of interest. Differences in inflow and outflow rates from the baseline conditions for each model run are computed and saved. The differences in individual components are summed and divided by the withdrawal rate to obtain a single capture fraction for each cell. Values are contoured to depict capture fractions for the time of interest. Considerations in carrying out the analysis include use of realistic physical boundaries in the model, understanding the degree of linearity of the model, selection of an appropriate time frame and withdrawal rate, and minimizing error in the global mass balance of the model.

Conference Paper↗
USGS2011

Spatially explicit shallow landslide susceptibility mapping over large areas

Recent advances in downscaling climate model precipitation predictions now yield spatially explicit patterns of rainfall that could be used to estimate shallow landslide susceptibility over large areas. In California, the United States Geological Survey is exploring community emergency response to the possible effects of a very large simulated storm event and to do so it has generated downscaled precipitation maps for the storm. To predict the corresponding pattern of shallow landslide susceptibility across the state, we have used the model Shalstab (a coupled steady state runoff and infinite slope stability model) which susceptibility spatially explicit estimates of relative potential instability. Such slope stability models that include the effects of subsurface runoff on potentially destabilizing pore pressure evolution require water routing and hence the definition of upslope drainage area to each potential cell. To calculate drainage area efficiently over a large area we developed a parallel framework to scale-up Shalstab and specifically introduce a new efficient parallel drainage area algorithm which produces seamless results. The single seamless shallow landslide susceptibility map for all of California was accomplished in a short run time, and indicates that much larger areas can be efficiently modelled. As landslide maps generally over predict the extent of instability for any given storm. Local empirical data on the fraction of predicted unstable cells that failed for observed rainfall intensity can be used to specify the likely extent of hazard for a given storm. This suggests that campaigns to collect local precipitation data and detailed shallow landslide location maps after major storms could be used to calibrate models and improve their use in hazard assessment for individual storms.

California↗
USGS2005

Coral disease and health workshop: Coral histopathology II, July 12-14, 2005

The health and continued existence of coral reef ecosystems are threatened by an increasing array of environmental and anthropogenic impacts. Coral disease is one of the prominent causes of increased mortality among reefs globally, particularly in the Caribbean. Although over 40 different coral diseases and syndromes have been reported worldwide, only a few etiological agents have been confirmed; most pathogens remain unknown and the dynamics of disease transmission, pathogenicity and mortality are not understood. Causal relationships have been documented for only a few of the coral diseases, while new syndromes continue to emerge. Extensive field observations by coral biologists have provided substantial documentation of a plethora of new pathologies, but our understanding, however, has been limited to descriptions of gross lesions with names reflecting these observations (e.g., black band, white band, dark spot). To determine etiology, we must equip coral diseases scientists with basic biomedical knowledge and specialized training in areas such as histology, cell biology and pathology. Only through combining descriptive science with mechanistic science and employing the synthesis epizootiology provides will we be able to gain insight into causation and become equipped to handle the pending crisis. One of the critical challenges faced by coral disease researchers is to establish a framework to systematically study coral pathologies drawing from the field of diagnostic medicine and pathology and using generally accepted nomenclature. This process began in April 2004, with a workshop titled Coral Disease and Health Workshop: Developing Diagnostic Criteria co-convened by the Coral Disease and Health Consortium (CDHC), a working group organized under the auspices of the U.S. Coral Reef Task Force, and the International Registry for Coral Pathology (IRCP). The workshop was hosted by the U.S. Geological Survey, National Wildlife Health Center (NWHC) in Madison, Wisconsin and was focused on gross morphology and disease signs observed in the field. A resounding recommendation from the histopathologists participating in the workshop was the urgent need to develop diagnostic criteria that are suitable to move from gross observations to morphological diagnoses based on evaluation of microscopic anatomy. As a continuation of building the foundation and framework for coral disease diagnostics, the CDHC convened the Coral Disease and Health Workshop: Coral Histopathology II in Charleston, South Carolina, July 11-14, 2005. The workshop was hosted by the Department of Pathology and Laboratory Medicine at the Medical University of South Carolina, Charleston, SC which provided expertise, facilities and equipment in support of the workshop. All of the histological slides and related photographs used in the discussions were prepared and supplied by the IRCP. This workshop brought together 15 experts in veterinary and medical pathology and coral biology from national and international research institutes and government laboratories. The mission was to devise a standardized approach to examining microscopic anatomy and pathology of corals and a standardized nomenclature to facilitate accurate descriptions of the microscopic morphology of corals and enhance communication among specialists investigating causes of coral death. 2 The participants of this workshop deliberated for 3 days to refine the nomenclature for gross and microscopic anatomy of corals and systematically described microscopic changes associated with selected coral diseases. The findings and recommendations from the deliberations will be submitted to the research community for peer review. The standardized nomenclature and descriptions produced at this workshop will ultimately be made available to the scientific community through a variety of media including the World Wide Web. An exciting highlight of this meeting was provided by Professor Robert Ogilvie (MUSC Department of Cell Biology and Anatomy) when he introduced participants to a new digital technology that is revolutionizing histology and histopathology in the medical field. The Virtual Slide technology creates digital images of histological tissue sections by computer scanning actual slides in high definition and storing the images for retrieval and viewing. Virtual slides now allow any investigator with access to a computer and the web to view, search, annotate and comment on the same tissue sections in real time. Medical and veterinary slide libraries across the country are being converted into virtual slides to enhance biomedical education, research and diagnosis. The coral health and disease researchers at this workshop deem virtual slides as a significant way to increase capabilities in coral histology and a means for pathology consultations on coral disease cases on a global scale.

NOAA Technical Memorandum↗
USGS1973

Boron-bearing potassium feldspar of authigenic origin in closed-basin deposits

Silicic vitric tuffs in saline, alkaline lacustrine deposits are commonly altered to a variety of zeolites and potassium feldspar. The tuffs generally show a lateral gradation, in a basinward direction, of fresh glass to zeolites and then to potassium feldspar. Zeolites were formed early in diagenesis by reaction of the glass with the interstitial water. The feldspar, however, was formed later by reaction of the zeolites with interstitial water, and its formation can be correlated with water of relatively high salinity and alkalinity. Semiquantitative spectrographic analyses for boron in the zeolites and potassium feldspar show that most of the boron resides in the relatively late feldspar. The boron content of the zeolites is commonly less than 100 ppm, whereas the boron content of the potassium feldspar is commonly greater than 1,000 ppm. Boron apparently substitutes for aluminum in the feldspar structure and causes distortion of the monoclinic unit cell such that the b and c dimensions are shortened. These boron-bearing potassium feldspars having anomalous cell parameters seem unique to saline, alkaline lacustrine deposits and could serve as a prospecting aid for locating buried saline minerals.

Journal of Research of the U.S. Geological Survey↗
USGS1989

Picornaviruses and reoviruses of fishes

The number of fish viruses isolated in cell culture or observed by electron microscopy continues to increase rapidly. Until recently, most viruses that were isolated from finfish and characterized were found to be members of the Rhabdoviridae, Iridoviridae, or Herpesviridae (Wolf and Mann 1980). In a comprehensive review of fish viruses published in 1984, there were no picornaviruses and only two reoviruses listed (Wolf 1984). The expansion of aquaculture into the rearing of new species at high density in different geographic areas, and the use of improved methods of detection that include newly developed cell lines and increased sampling effort, have led to the discovery of fish viruses representing nearly all families of animal viruses. Among the newest additions, are a member of the family Picornaviridae and several new viruses that belong within the Reoviridae.

Book chapter↗
USGS1989

Isolation of a reovirus from coho salmon ( Oncorhynchus kisutch ) in Oregon, USA

Reoviruses isolated from aquatic animals share certain common characteristics: (1) a typical reovirus-like morphology which shows an icosahedral particle with a double capsid that is approximately 75 nm in diameter; (2) a genome with eleven segments of double-stranded RNA (dsRNA) distributed as three large, three medium and five small segments with a total molecular weight of approximately 15 x 106; (3) a virion composed of five major and several minor structural proteins that range in molecular weight from 32,000 to 137,000; and (4) form plaque-like syncytia in monolayer cultures of fish cells. Intact virus particles have buoyant densities in CsCl of 1.34 to 1.36 g/ml. The viruses have been isolated from fish and shellfish collected in both the marine and freshwater environments and will replicate in several fish cell lines (Plumb et al., 1979; Meyers and Hirai, 1980; Winton et al., 1981; Nagabayashi and Mori, 1983; Hedrick et al., 1984; Chen and Jiang, 1984). The original four aquatic reovirus isolates have been compared by Winton et al., 1987.

Book chapter↗
USGS2012

Exploring the erodibility of sediments and harmful algal blooms in the Gulf of Maine

Investigators at the U.S. Geological Survey (USGS) are cooperating with scientists at Woods Hole Oceanographic Institution (WHOI) to investigate harmful algal blooms along the New England coast in the Gulf of Maine. These blooms are caused by cysts of the dinoflagellate Alexandrium fundyense that overwinter in the bottom sediments and germinate in spring. Depending on conditions such as temperature, light, nutrient levels, and currents, these single-celled organismscan create a bloom along the coast, called ‘red tides.’Shellfish that have ingested these cells in sufficient concentration can become toxic to humans and require that the shellfisheries be closed. After the spring bloom, the organisms form cysts that sink to the sea floor and are sequestered in the bottom sediments over the winter.

EcoSystem Indicator Partnership Journal↗
USGS2001

Immunogenetics and resistance to avian malaria in Hawaiian honeycreepers (Drepanidinae)

Although a number of factors have contributed to the decline and extinction of Hawai‘i’s endemic terrestrial avifauna, introduced avian malaria ( Plasmodium relicturn ) is probably the single most important factor preventing recovery of these birds in low-elevation habitats. Continued decline in numbers, fragmentation of populations, and extinction of species that are still relatively common will likely continue without new, aggressive approaches to managing avian disease. Methods of intervention in the disease cycle such as chemotherapy and vaccine development are not feasible because of efficient immune-evasion strategies evolved by the parasite, technical difficulties associated with treating wild avian populations, and increased risk of selection for more virulent strains of the parasite. We are investigating the natural evolution of disease resistance in some low-elevation native bird populations, particularly Hawai‘i ‘Amakihi ( Hemignathus virens ), to perfect genetic methods for identifying individuals with a greater immunological capacity to survive malarial infection. We are focusing on genetic analyses of the major histocompatibility complex, due to its critical role in both humoral and cell-mediated immune responses. In the parasite, we are evaluating conserved ribosomal genes as well as variable genes encoding cell-surface molecules as a first step in developing a better understanding of the complex interactions between malarial parasites and the avian immune system. A goal is to provide population managers with new criteria for maintaining long-term population stability for threatened species through the development of methods for evaluating and maintaining genetic diversity in small populations at loci important in immunological responsiveness to pathogens.

Hawai'i↗
USGS2017

Groundwater flow model for the Little Plover River basin in Wisconsin’s Central Sands

The Little Plover River is a groundwater-fed stream in the sand plains region of central Wisconsin. In this region, sandy sediment deposited during or soon after the last glaciation forms an important unconfined sand and gravel aquifer. This aquifer supplies water for numerous high-capacity irrigation, municipal, and industrial wells that support a thriving agricultural industry. In recent years the addition of many new wells, combined with observed diminished flows in the Little Plover and other nearby rivers, has raised concerns about the impacts of the wells on groundwater levels and on water levels and flows in nearby lakes, streams, and wetlands. Diverse stakeholder groups, including well operators, Growers, environmentalists, local land owners, and regulatory and government officials have sought a better understanding of the local groundwater-surface water system and have a shared desire to balance the water needs of the he liagricultural, industrial, and urban users with the maintenance and protection of groundwater-dependent natural resources. To help address these issues, the Wisconsin Department of Natural Resources requested that the Wisconsin Geological and Natural History Survey and U.S. Geological Survey cooperatively develop a groundwater flow model that could be used to demonstrate the relationships among groundwater, surface water, and well withdrawals and also be a tool for testing and evaluating alternative water management strategies for the central sands region. Because of an abundance of previous studies, data availability, local interest, and existing regulatory constraints the model focuses on the Little Plover River watershed, but the modeling methodology developed during this study can apply to much of the larger central sands of Wisconsin. The Little Plover River groundwater flow model simulates three-dimensional groundwater movement in and around the Little Plover River basin under steady-state and transient conditions. This model explicitly includes all high-capacity wells in the model domain and simulates seasonal variations in recharge and well pumping. The model represents the Little Plover River, and other significant streams and drainage ditches in the model domain, as fully connected to the groundwater system, computes stream base flow resulting from groundwater discharge, and routes the flow along the stream channel. A separate soil-water-balance (SWB) model was used to develop groundwater recharge arrays as input for the groundwater flow model. The SWB model uses topography, soils, land use, and climatic data to estimate recharge as deep drainage from the soil zone. The SWB model explicitly includes recharge originating as irrigation water, and computes irrigation using techniques similar to those used by local irrigation operators. The groundwater flow model uses the U.S. Geological Survey’s MODFLOW modeling code which is freely available, widely accepted, and commonly used by the groundwater community. The groundwater flow model and the SWB model use identical high-resolution numerical grids having model cells 100 feet on a side, with physical properties assigned to each grid cell. This grid allows accurate geographic placement of wells, streams, and other model features. The 3-dimensional grid has three layers; layers 1 and 2 represent the sand and gravel aquifer and layer 3 represents the underlying sandstone. The distribution of material properties in the model (hydraulic conductivity, aquifer thickness, etc.) comes from previous published geologic studies of the region, updated by calibration to recent streamflow and groundwater level data. The SWB model operates on a daily time step. The groundwater flow model was calibrated to monthly stress periods with time steps ranging from 1 to 16 days. More detailed time discretization is possible. The groundwater model was calibrated to water-level and streamflow data collected during 2013 and 2014 by adjusting model parameters (primarily hydraulic conductivity, storage, and recharge) until the model produced a conditionally optimal fit between field observations and model output, subject to consistency with previously published geologic studies. Calibration was performed under both steady and transient conditions, and used a sophisticated parameter-estimation procedure (PEST) for the calibration process and to identify important model parameters. For the Little Plover River, the two most important parameters are the global recharge multiplier and the hydraulic conductivity of the stream bed. The calibrated model produces water-level and mass-balance results that are consistent with field observations and previous studies of the area. The completed model is a powerful tool for testing and demonstrating alternative water-management scenarios. Example model applications described in this report include simulating how the cumulative impacts of pumping and land-use change have affected average baseflow in the Little Plover River. Depletion-potential mapping represents a method for predicting which wells and well locations have the greatest impact on nearby surface-water resources. The completed model is publicly available, along with a companion user’s guide to assist with its operation, at http://wgnhs.org/littleplover- river-groundwater-model.

Wisconsin↗
USGS1996

Hematology and clinical chemistry of sea otters vaptured in Prince William Sound, Alaska following the Exxon Valdez Oil Spill

Hematologic and serum chemical analyses were performed on sea otter blood samples collected from 31 adult males, 63 adult females, and 42 pups captured in western Prince William Sound (oiled area), and 12 adult males, 40 adult females, and 15 pups captured in eastern Prince William Sound (unoiled area) in 1989 and 1990. Hematologic differences between eastern and western adult males were minimal. Both hematocrits and hemoglobins were higher in western than eastern otters but the biological significance of this is equivocal. Western males had higher absolute eosinophil counts, suggesting possible systemic hypersensitivity reactions. Western males had higher serum protein and serum globulin levels than eastern males, suggesting greater antigenic stimulation (more inflammatory and/or infectious conditions). There were no differences in hematologic parameters between eastern and western female otters. Some chemistry changes were present, but the degree of difference was small. Total protein and serum globulin levels were slightly higher in western females, a finding also seen in adult males. Mean levels of liver enzymes for western females were somewhat higher than for the eastern otters, suggesting the possibility of subclinical liver disease. As a group, western pup hematocrits, hemoglobins, and red cell counts were significantly lower than those of eastern pups. From a biological perspective, these reductions were minimal but supported by individual animal data. The red cell data suggest a mild anemia in western pups; however, the degree of anemia was minimal, so that biological significance was equivocal. Other hematologic and clinical chemical differences between eastern and western pups were not striking and were also of equivocal biological significance.

Alaska↗
USGS2018

2D and 3D potential field mapping and modelling at the Fallon FORGE site, Nevada, USA

Accurate geological characterization of Fallon FORGE is important for preparing the site as an EGS laboratory. As part of this effort, a 3D geologic map was constructed previously from well logs, surface geologic mapping, 2D seismic profiles, interpreted gravity & magnetic maps, and a gravity-inferred basement surface. In this study, we have conducted both 2D and 3D modelling of high-resolution gravity and magnetic data (pre-existing and new) in an effort to further refine and test this 3D geologic map at Fallon. This effort enabled a direct comparison of the 2D and 3D model results. Potential field modelling was guided by rock-property measurements of samples from drill-core and outcrop from the Fallon area. In total, five 2D potential field model profiles, up to 30 km in length, were constructed that extend across the Fallon area. The 3D gravity model volume was 8 km (N-S) x 8 km (E-W) x 4 km (thick). The majority of the 3D gravity model volume had 100 m cubic cells; but cells near the land surface were 1 m thick to adequately capture topography. Overall, the 2D & 3D geophysical modelling largely confirmed the previously constructed 3D geologic map at Fallon for three reasons: 1) lithologic boundaries in the 2D & 3D density models mostly agree with those in the 3D geologic map, 2) the rock properties used in the models lie within the range of independent measurements made on representative rock samples from the region, and 3) the match between the observed and calculated anomalies are largely within the measurement error of the observed fields. In places where the geophysical and geologic models differ, geophysical model results have revealed subsurface structural features that have helped refine geologic interpretations which, in turn, lead to adjustments to the 3D geologic map. In this paper, we present the 2D & 3D geophysical model results and discuss how they were utilized to confirm and refine our 3D geologic understanding of the Fallon FORGE site.

Geothermal Resources Council Transactions↗
USGS1969

The role of larval Chironomidae in the production of lacustrine copropel in Mud Lake, Marion County, Florida

Mud Lake is a shallow (avg 45 cm), alkaline (pH 7.7–10.2), brown‐water lake having an area of about 180 ha. A study of its organic sediment was undertaken because it appears to be a present‐day analogue of the richly organic lacustrine oozes that were the precursors of the oil shales of the Green River Formation (Eocene). The water contains about 200 ppm total dissolved solids. The soft ooze is about 1 m thick and consists of minute fecal pellets produced primarily by larvae of Chironomus ( Chironomus ) sp. Mean numbers of larvae ranged from 120 to 580 m −2 ; such a small population may reflect extensive predation by fish. The small diversity of Chironomidae at this latitude may reflect the fact that few organisms can tolerate the physical conditions produced by the shallow water. Experiments with laboratory‐reared Mud Lake midges showed that the numbers of fecal pellets produced generally increased with the concentration of algal cells available; that only when the larvae were fed blue‐green algae were the fecal pellets coherent and durable—larvae fed green algae produced pellets that disintegrated, returning the undigested algae to the food supply; and that larvae fed blue‐green algae changed from filter‐feeding to grazing on the fecal pellets when suspended algal cells became sparse. We conclude that the sediment in Mud Lake is pelletal because only blue‐green algae are available for food and that the larvae probably graze because all the blue‐greens live only on, or in, the fecal pellets. Early instars produce ovoid pellets; later instars produce longer, cylindrical pellets. The analogy between the Mud Lake pelletal ooze and the Eocene precursors of the Green River Formation oil shale is enhanced by the facts that some oil shale thin sections show minute fecal pellets and that certain beds of rich oil shale contain numerous unmineralized remains of immature chironomids.

Florida↗
USGS2022

Exploring declustering methodology for addressing geothermal exploration bias

Geothermal resources assessments use data that are unevenly distributed in space, with more data collected in areas with known thermal features. To meet the assumptions for geostatistical modeling (e.g., variography and kriging) such as having a random sample representative of the population, declustering may be needed to correct for spatial sample bias. Several declustering methods exist and to understand how best to use these methods, we apply these to real data and samples of that data. The work described herein summarizes the application of cell-based declustering to shallow temperature data (~20 cm) collected in a survey across a thermal feature in the Lower Geyser Basin, Yellowstone National Park, Wyoming. The sample dataset is a regular grid (3-m spacing) of temperatures across a 72-m square area, providing a shallow, subsurface temperature dataset collected with minimal spatial bias (a few grid locations near a hot spring could not be sampled). To test the influence of sample clustering on geothermal estimates, this dense dataset is sub-sampled irregularly to evaluate bias on temperature estimation. Three sampling strategies were tested: a simple random sample, a stratified random sample, and a stratified biased random sample. The naive mean (before declustering) values for each dataset were compared to the post-declustering mean to evaluate the effectiveness of declustering on correcting the mean for spatial bias. For the limited number of sample datasets evaluated, we found that although cell-based declustering did partially correct the mean, some bias remained (i.e., the estimate was improved, but not fully corrected). It is possible that the procedure documented herein (applied here to only a few random samples) could be applied to many random samples, so that robust conclusions might be drawn (e.g., Is there always some remaining bias in declustered estimates? Does it depend on the number of sample points?). In particular, bias could be evaluated for persistency, and uncertainty could be evaluated.

Geothermal Resources Council Transactions↗
USGS2002

The epizootiology of type C botulism in fish-eating birds at Salton Sea, California

During 1996, type C avian botulism killed over 15,000 fish-eating birds at the Salton Sea in southern California. Amont those affected were nearly 10,000 western white pelicans (Pelecanus erythrorhynchos) and over 1,200 endangered California brown pelicans (Pelecanus occidentalis californicus). Since 1996, smaller epizootics have occurred every year. Type C botulism is not typically associated with fish-eating birds. In the case of the Salton Sea, Mozambique tilapia (Oreochromis mossambicus) are the suspected source of type C toxin, although the mechanism by which the fish acquire the toxin is still unknown. The goals of this study were to: 1) Determine presence/absence of active Clostridium botulinum type C and type C botulinum toxin in tilapia in the Salton Sea. 2) Use geospatial analyses to evaluate relationships between patterns of mortality in birds and fish and presence/absence of toxin and/or toxin-producing bacteria in sediments and fish. We investigated a method of detecting C. botulinum type C cells in the intestinal contents of Mozambique tilapia. This method involved extraction of predominantly cellular DNA and uses a polymerase chain reaction assay to detect presence of type C toxin gene. We collected sick, dead and healthy fish from various sites throughout the Sea during the summers of 1999 to 2001 in order to test them for the presence of active C. botulinum type C by PCR and for the presence of type C toxin by ELISA and mouse test. The results demonstrate that the tilapia population in the Salton Sea harbors C. botulinum type C cells within their gastrointestinal tract and the prevalence of this organism varies from year to year. The total number of fish with toxin-producing bacteria was significantly greater in 2000 than in 2001. No difference in the numbers of positives was detected between sick and dead fish compared to live fish, and there were no differences noted with regard to location of fish collection. The prevalence of active type C toxin in tilapia was low and the majority of samples positive for toxin by ELISA were negative on mouse test. Further investigation is currently underway. From 1999-2001, routine surveillance was conducted July through November to detect morbidity and mortality in pelicans. Location of retrieval and total number of birds collected were documented. In all three years, the majority of botulism-affected pelicans were retrieved from the vicinities of the river deltas although the Whitewater River had the fewest birds of the three. It has yet to be determined what roles the tilapia and pelican populations play in influencing these patterns.

California↗
USGS1977

Virion RNA polymerases of two salmonid rhabdoviruses

RNA-dependent RNA polymerases were found to be associated with two salmonid rhabdoviruses: infectious hematopoietic necrosis (IHN) virus and the virus of hemorrhagic septicemia (VHS). The protein composition of these rhabdoviruses closely resembles that of rabies virus rather than that of vesicular stomatitis virus (McAllister and Wagner, 1975). The optimal temperature for in vitro transcription was found to be approximately 18 degrees C for IHN virus and approximately 15 degrees for VHS, closely approximating optimal temperatures for growth of these viruses in salmonid cells. Unlike vesicular stomatitis virus, manganese ion (1 mM) could be used as a divalent cation substitute for magnesium ion (5 mM). The in vitro transcription products of IHN and VHS viruses hybridized completely to the homologous genome but not at all to the heterologous genome.

Journal of Virology↗
USGS1996

Global distribution of plant-extractable water capacity of soil

Plant-extractable water capacity of soil is the amount of water that can be extracted from the soil to fulfill evapotranspiration demands. It is often assumed to be spatially invariant in large-scale computations of the soil-water balance. Empirical evidence, however, suggests that this assumption is incorrect. In this paper, we estimate the global distribution of the plant-extractable water capacity of soil. A representative soil profile, characterized by horizon (layer) particle size data and thickness, was created for each soil unit mapped by FAO (Food and Agriculture Organization of the United Nations)/Unesco. Soil organic matter was estimated empirically from climate data. Plant rooting depths and ground coverages were obtained from a vegetation characteristic data set. At each 0.5°×0.5° grid cell where vegetation is present, unit available water capacity (cm water per cm soil) was estimated from the sand, clay, and organic content of each profile horizon, and integrated over horizon thickness. Summation of the integrated values over the lesser of profile depth and root depth produced an estimate of the plant-extractable water capacity of soil. The global average of the estimated plant-extractable water capacities of soil is 8ċ6cm (Greenland, Antarctica and bare soil areas excluded). Estimates are less than 5, 10 and 15 cm—over approximately 30, 60, and 89 per cent of the area, respectively. Estimates reflect the combined effects of soil texture, soil organic content, and plant root depth or profile depth. The most influential and uncertain parameter is the depth over which the plant- extractable water capacity of soil is computed, which is usually limited by root depth. Soil texture exerts a lesser, but still substantial, influence. Organic content, except where concentrations are very high, has relatively little effect.

International Journal of Climatology↗