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At least 1,027 records · Page 57Linked to original sources
USGS2002

Parasite (Ribeiroia ondatrae) infection linked to amphibian malformations in the western United States

Parasites and pathogens can influence the survivorship, behavior, and very structure of their host species. For example, experimental studies have shown that trematode parasites can cause high frequencies of severe limb malformations in amphibians. In a broad-scale field survey covering parts of California, Oregon, Washington, Idaho, and Montana, we examined relationships between the frequency and types of morphological abnormalities in amphibians and the abundance of trematode parasite infection, pH, concentrations of 61 pesticides, and levels of orthophosphate and total nitrate. We recorded severe malformations at frequencies ranging from 1% to 90% in nine amphibian species from 53 aquatic systems. Infection of larvae by the trematode Ribeiroia ondatrae was associated with, and functionally related to, higher frequencies of amphibian limb malformations than found in uninfected populations (≤5%). Parasites were concentrated around the basal tissue of hind limbs in infected anurans, and malformations associated with infection included skin webbings, supernumerary limbs and digits, and missing or malformed hind limbs. In the absence of Ribeiroia, amphibian populations exhibited low (0-5%) frequencies of abnormalities involving missing digits or distal portions of a hind limb. Species were affected differentially by the parasite, and Ambystoma macrodactylum, Hyla regilla, Rand aurora, R. luteiventris, and Taricha torosa typically exhibited the highest frequencies of abnormalities. None of the water-quality variables measured was associated with malformed amphibians, but aquatic snail hosts (Planorbella spp.) were significant predictors of the presence and abundance of Ribeiroia infection. Morphological comparisons of adult specimens of Ribeiroia collected from different sites and raised in experimental definitive hosts suggested that all samples represented the same species - R. ondatrae. These field results, coupled with experimental research on the effects of Ribeiroia on amphibians, demonstrate that Ribeiroia infection is an important and widespread cause of amphibian limb malformations in the western United States. The relevance of trematode infection to declines of amphibian populations and the influence of habitat modification on the pathology and life cycle of Ribeiroia are emphasized as areas requiring further research.

Ecological Monographs↗
USGS2007

The Charles River, Eastern Massachusetts: Scientific Information in Support of Environmental Restoration

Human activity has profoundly altered the Charles River and its watershed over the past 375 years. Restoration of environmental quality in the watershed has become a high priority for private- and public-sector organizations across the region. The U.S. Environmental Protection Agency and the Massachusetts Executive Office of Environmental Affairs worked together to coordinate the efforts of the various organizations. One result of this initiative has been a series of scientific studies that provide critical information concerning some of the major hydrologic and ecological concerns in the watershed. These studies have focused upon: * Streamflows - Limited aquifer storage, growing water demands, and the spread of impervious surfaces are some of the factors exacerbating low summer streamflows in headwater areas of the watershed. Coordinated management of withdrawals, wastewater returns, and stormwater runoff could substantially increase low streamflows in the summer. Innovative approaches to flood control, including preservation of upstream wetland storage capacity and construction of a specially designed dam at the river mouth, have greatly reduced flooding in the lower part of the watershed in recent decades. * Water quality - Since the mid-1990s, the bacterial quality of the Charles River has improved markedly, because discharges from combined sewer overflows and the number of illicit sewer connections to municipal storm drains have been reduced. Improved management of stormwater runoff will likely be required, however, for full attainment of State and Federal water-quality standards. Phosphorus inputs from a variety of sources remain an important water-quality problem. * Fish communities and habitat quality - The Charles River watershed supports a varied fish community of about 20 resident and migratory species. Habitat conditions for fish and other aquatic species have improved in many parts of the river system in recent years. However, serious challenges remain, including the control of nutrients, algae, and invasive plants, mitigation of dam impacts, addressing remaining sources of bacteria to the river, and remediation of contaminated bottom habitat and the nontidal salt wedge in the lower river.

General Information Product↗
USGS2015

Literature review of giant gartersnake ( Thamnophis gigas ) biology and conservation

This report reviews the available literature on giant gartersnakes ( Thamnophis gigas ) to compile existing information on this species and identify knowledge gaps that, if addressed, would help to inform conservation efforts for giant gartersnakes. Giant gartersnakes comprise a species of semi-aquatic snake precinctive to wetlands in the Central Valley of California. The diversion of surface water and conversion of wetlands to agricultural and other land uses resulted in the loss of more than 90 percent of natural giant gartersnake habitats. Because of this habitat loss, giant gartersnakes are now listed by the United States and California Endangered Species Acts as Threatened. Most extant populations occur in the rice-growing regions of the Sacramento Valley, which comprises the northern portion of the giant gartersnake’s former range. The huge demand for water in California for agriculture, industry, recreation, and other human consumption, combined with periodic severe drought, places remaining giant gartersnake habitats at increased risk of degradation and loss. This literature review summarizes the available information on giant gartersnake distribution, habitat relations, behavior, demography, and other aspects of its biology relevant to conservation. This information is then compiled into a graphical conceptual model that indicates the importance of different aspects of giant gartersnake biology for maintaining positive population growth, and identifies those areas for which important information relevant for conservation is lacking. Directing research efforts toward these aspects of giant gartersnake ecology will likely result in improvements to conserving this unique species while meeting the high demands for water in California.

Open-File Report↗
USGS2005

Aquatic assemblages of the highly urbanized Santa Ana River Basin, California

We assessed the structure of periphyton, benthic macroinvertebrate, and fish assemblages and their associations with environmental variables at 17 sites on streams of the highly urbanized Santa Ana River basin in Southern California. All assemblages exhibited strong differences between highly urbanized sites in the valley and the least-impacted sites at the transition between the valley and undeveloped mountains. Results within the urbanized area differed among taxa. Periphyton assemblages were dominated by diatoms (>75% of total taxa). Periphyton assemblages within the urbanized area were not associated with any of the measured environmental variables, suggesting that structure of urban periphyton assemblages might be highly dependent on colonization dynamics. The number of Ephemeroptera, Trichoptera, and Plecoptera (EPT) taxa included in macroinvertebrate assemblages ranged from 0 to 6 at urbanized sites. Benthic macroinvertebrate assemblages had significant correlations with several environmental variables within the urban area, suggesting that stream size and permanence were important determinants of distribution among the species able to survive conditions in urban streams. Only 4 of 16 fish species collected were native to the drainage. Fish assemblages of urbanized sites included two native species, arroyo chub Gila orcuttii and Santa Ana sucker Catostomus santaanae, at sites that were intermediate in coefficient of variation of bank-full width, depth, bed substrate, and water temperature. Alien species dominated urbanized sites with lesser or greater values for these variables. These results suggest that urban streams can be structured to enhance populations of native fishes. Continued study of urban streams in the Santa Ana River basin and elsewhere will contribute to the basic understanding of ecological principles and help preserve the maximum ecological value of streams in highly urbanized areas.

American Fisheries Society Symposium↗
USGS2023

Predatory impacts of invasive Blue Catfish in an Atlantic coast estuary

Objective Predatory invasive fishes may consume species of management interest and alter food webs. Blue Catfish Ictalurus furcatus is a large-bodied, salinity-tolerant species that exhibits broad diet breadth and preys on species of both conservation concern and fisheries management interest. To better understand the ecological consequences of the establishment of Blue Catfish fisheries, estimates of predatory impacts are needed. Methods Using a Monte Carlo simulation, we integrated abundance estimates, diet information, and consumption-to-biomass ratios to estimate population-level Blue Catfish predation for a large Chesapeake Bay tributary along the mid-Atlantic coast of the United States, the James River. Result Population-level annual predation estimates by Blue Catfish exceeded 100 metric tons for several species or taxa of interest, including an estimated 400.7 metric tons (95% CI = 272.6–613.2) of blue crab Callinectes sapidus . Prey species abundances were unknown and thus limited opportunities to evaluate prey population responses. For instance, effects of Blue Catfish on blue crab populations remain unknown without tributary-specific estimates of blue crab abundance, but comparisons to landings data suggests that Blue Catfish predation on blue crab in the James River may be low compared with harvest. Conclusion Estimation of Blue Catfish predatory effects may inform development of management goals and objectives that balance diverse stakeholder interests. This work provides beneficial information to assess trade-offs of Blue Catfish fisheries and their effects on coastal aquatic resources.

Virginia↗
USGS2025

Application of transcriptomics concentration-response modeling for prioritization of contaminants detected in tributaries of the North American Great Lakes

As part of the Great Lakes Restoration Initiative, chemical monitoring and surveillance efforts have detected approximately 330 chemicals in surface water of Great Lakes tributaries. There were 140 chemicals for which no empirical toxicity data were available. The aim of this study was to generate transcriptomic points of departure (tPODs) for 10 of these compounds and demonstrate how they could be applied in a screening-level prioritization. Organisms representing three trophic levels of the aquatic food web ( Pimephales promelas , Daphnia magna , and Raphidocelis subcapitata ) were exposed for 24 hr to a half-log dilution series of nominal exposure concentrations typically ranging from 66.7–0.021 µM of each chemical. In addition to observations of apical effects (e.g., survival and morphology), whole body transcriptomic responses (tPODs) to each chemical were evaluated with targeted analysis using TempO-seq for P. promelas and D. magna and nontargeted RNA-seq for R. subcapitata . The tPODs ranged from 0.18–10.8 µM for P. promelas and 0.32–29 µM for D. magna , with the most potent of the chemicals tested being fipronil carboxamide for both species. For R. subcapitata , the tPODs ranged from 0.04–1.77 µM, with gabapentin as the most potent chemical tested. Empirically derived tPODs from these data-poor chemicals were compared with concentrations detected in the Great Lakes basin. Environmental concentrations were less than the tPODs except for R. subcapitata and 3,4-dichlorophenyl isocyanate. Similarly, tPODs from previously tested data-rich chemicals were compared with environmental concentrations, in which case tPODs from several chemicals overlapped environmental concentrations. This work demonstrates the potential utility of emerging ecological high-throughput transcriptomics assays to support screening and prioritization of data-poor environmental contaminants.

Environmental Toxicology and Chemistry↗
USGS2019

Life-history variation of two inland salmonids revealed through otolith microchemistry analysis

Increasingly, otolith microchemistry analysis is used as a tool to trace fish migrations, especially migrations of diadromous fishes. Yet, few studies have used otolith microchemistry to trace migrations in small inland watersheds, leaving major knowledge gaps in our understanding of inland fish spatial ecology. Here, we evaluate the use of tributary habitat for spawning and describe and compare fluvial brown trout ( Salmo trutta ) and rainbow trout ( Oncorhynchus mykiss ) natal origin distribution, time spent in natal streams, and spawning site fidelity. 63% of rainbow trout and 57% of brown trout migrated after hatching. Brown trout showed greater variation in time spent in natal tributaries, suggesting that individuals are temporally distributing risk among offspring. By contrast, rainbow trout showed greater variation in natal origin, suggesting that individuals are spatially distributing risk among offspring. Our results indicate there is high inter- and intraspecific migration variation in inland salmonid populations, which may be linked to access to a mosaic of spawning and rearing habitat types.

Colorado, Wyoming↗
USGS2016

Land cover changes associated with recent energy development in the Williston Basin; Northern Great Plains, USA

The Williston Basin in the Northern Great Plains has experienced rapid energy development since 2000. To evaluate the land cover changes resulting from recent (2000 – 2015) development, the area and previous land cover of all well pads (pads) constructed during this time was determined, the amount of disturbed and reclaimed land adjacent to pads was estimated, land cover changes were analyzed over time for three different well types, and the effects from future development were predicted. The previous land cover of the 12,990 ha converted to pads was predominately agricultural (49.5%) or prairie (47.4%) with lesser amounts of developed (2.3%), aquatic (0.5%), and forest (0.4%). Additionally, 12,121 ha have likely been disturbed and reclaimed. The area required per gas well remained constant through time while the land required per oil well increased initially and then decreased as development first shifted from conventional to unconventional drilling and then to multi-bore pads. For non-oil-and- gas wells (i.e. stratigraphic test wells, water wells, injection wells, etc.), the area per well increased through time likely due to increased produced water disposal requirements. Future land cover change is expected to be 2.7 times greater than recent development with much of the development occurring in five counties in the core Bakken development area. Direct land cover change and disturbance from recent and expected development are predicted to affect 0.4% of the landscape across the basin; however, in the core Bakken development area, 2.3% of the landscape will be affected including 2.1% of the remaining grassland. Although future development will result in significant land cover change, evolving industry practices and proactive siting decisions, such as development along energy corridors and placing pads in areas previously altered by human activity, have the potential to reduce the ecological effects of future energy development in the Williston Basin.

Williston Basin↗
USGS2006

Coastal wetlands of the northern Gulf of California: Inventory and conservation status

1. Above 28°N, the coastline of the northern Gulf of California is indented at frequent intervals by negative or inverse estuaries that are saltier at their backs than at their mouths due to the lack of freshwater inflow. These ‘esteros’ total over 215 000 ha in area and encompass mangrove marshes below 29°N and saltgrass ( Distichlis palmeri ) marshes north of 29°N. An additional 6000 ha of freshwater and brackish wetlands are found in the Colorado River delta where fresh water enters the intertidal zone. 2. The mangrove marshes in the Gulf of California have been afforded some degree of protected status in Mexico, but the northern saltgrass esteros do not have priority conservation status and are increasingly becoming development targets for resorts, vacation homes and aquaculture sites. 3. We conducted an inventory of the marshes using aerial photography and satellite images, and evaluated the extent and type of development on each marsh. We reviewed the available literature on the marshes to document their vegetation types and ecological functions in the adjacent marine and terrestrial ecosystems. 4. Over 95% of the mangrove marshes have been developed for shrimp farming. However, the farms are built adjacent to, rather than in, the marshes, and the mangrove stands are still mostly intact. 5. The majority of saltgrass marshes above the mangrove line are still relatively unspoiled. However, resort and vacation home development is taking place on land surrounding them. 6. We recommend a system of protected reserves incorporating the pristine wetlands, along with water quality management and buffer zones for the more developed esteros. The saltgrass marshes should be considered for conservation protection, similar to the protection given to the southern mangrove marshes whose value has already been recognized.

Gulf of California↗
USGS2006

Vascular Plant and Vertebrate Inventory of Gila Cliff Dwellings National Monument

Executive Summary This report summarizes the results of the first comprehensive biological inventory of Gila Cliff Dwellings National Monument (NM) in western New Mexico. This project was part of a larger effort to inventory plants and vertebrates in eight National Park Service units in Arizona and New Mexico. Our surveys address many of the objectives that were set forth in the monument's natural resource management plan almost 20 years ago, but until this effort, those goals were never accomplished. From 2001 to 2003 we surveyed for vascular plants and vertebrates (amphibians, reptiles, birds, and mammals) at Gila Cliff Dwellings NM to document presence of species within the boundaries of the monument. For all taxonomic groups that we studied, we collected 'incidental' sightings on U.S. Forest Service lands adjacent to the monument, and in a few cases we did formal surveys on those lands. Because we used repeatable study designs and standardized field techniques, these inventories can serve as the first step in a biological monitoring program for Gila Cliff Dwellings NM and surrounding lands. We recorded 552 species at Gila Cliff Dwellings NM and the surrounding lands (Table 1). We found no non-native species of reptiles, birds, or mammals, one non-native amphibian (American bullfrog), and 33 non-native plants. Particularly on lands adjacent to the monument we found that the American bullfrog was very abundant, which is a cause for significant management concern. Species of non-native plants that are of management concern include red brome, bufflegrass, and cheatgrass. For a park unit of its size and geographic location, we found the plant and vertebrate communities to be fairly diverse; for each taxonomic group we found representative species from a wide range of taxonomic orders and/or families. The monument's geographic location, with influences from the Rocky Mountain, Chihuahuan Desert, and Madrean ecological provinces, plays an important role in determining the species richness at the monument. Also important is the wide range of conditions at the site. The diversity of plants results from a wide variety of soil types and aspects (from the cool, moist Cliff Dweller Canyon to dry mesa slopes) and an abundance of water from the West Fork of the Gila River. In turn, the vertebrate communities respond to this diversity of vegetation, topography, and microsites. For example, for each taxonomic group we found species that were only associated with a single community type, most often the riparian areas along the West and Middle forks of the Gila River. We found cause for significant concern with regard to loss of species in the last few decades. One species of amphibian (Chiricahua leopard frog) is certainly extirpated from the area. Three other species of amphibians (Mexican spadefoot, Woodhouse's toad, and red-spotted toad), reported as being 'common' in the area in 1971, were not found during our surveys. In addition, we did not find three species of rodents that were found in 1965: silky pocket mouse, Ord's kangaroo rat, and southern grasshopper mouse. The monument's aquatic vertebrate component, in particular, may be at a critical juncture whereby other species, such as gartersnakes, may be poised for extirpation. Declining abundance of native fish species has been demonstrated from long-term monitoring of these communities along the Middle Fork of the Gila River. This report includes lists of species recorded by us or species likely to be recorded with additional survey effort. It also includes management implications from our work - how the monument staff might better maintain or enhance the unique biological resources of the monument. This study is the first step in a long-term process of compiling information on the biological resources of the monument and its surrounding areas. We recommend additional inventory and monitoring studies and identify components of our effort that could be improved upon

Open-File Report↗
USGS2011

Concentrations, loads, and sources of polychlorinated biphenyls, Neponset River and Neponset River Estuary, eastern Massachusetts

Polychlorinated biphenyls (PCBs) are known to contaminate the Neponset River, which flows through parts of Boston, Massachusetts, and empties into the Neponset River Estuary, an important fish-spawning area. The river is dammed and impassable to fish. The U.S. Geological Survey, in cooperation with the Massachusetts Department of Fish and Game, Division of Ecological Restoration, Riverways Program, collected, analyzed, and interpreted PCB data from bottom-sediment, water, and (or) fish-tissue samples in 2002, 2004-2006. Samples from the Neponset River and Neponset River Estuary were analyzed for 209 PCB congeners, PCB homologs, and Aroclors. In order to better assess the overall health quality of river-bottom sediments, sediment samples were also tested for concentrations of 31 elements. PCB concentrations measured in the top layers of bottom sediment ranged from 28 nanograms per gram (ng/g) just upstream of the Mother Brook confluence to 24,900 ng/g measured in Mother Brook. Concentrations of elements in bottom sediment were generally higher than background concentrations and higher than levels considered toxic to benthic organisms according to freshwater sediment-quality guidelines defined by the U.S. Environmental Protection Agency. Concentrations of dissolved PCBs in water samples collected from the Neponset River (May 13, 2005 to April 28, 2006) averaged about 9.2 nanograms per liter (ng/L) (annual average of monthly values); however, during the months of August (about 16.5 ng/L) and September (about 15.6 ng/L), dissolved PCB concentrations were greater than 14 ng/L, the U.S. Environmental Protection Agency's freshwater continuous chronic criterion for aquatic organisms. Concentrations of PCBs in white sucker (fillets and whole fish) were all greater than 2,000 ng/g wet wt, the U.S. Environmental Protection Agency's guideline for safe consumption of fish: PCB concentrations measured in fish-tissue samples collected from the Tileston and Hollingsworth and Walter Baker Impoundments were 3,490 and 2,450 ng/g wet wt (filleted) and 6,890 and 4,080 ng/g wet wt (whole fish). Total PCB-congener concentrations measured in the whole bodies of estuarine bait fish (common mummichog) averaged 708 ng/g wet wt. PCBs that pass from the Neponset River to the Neponset River Estuary are either dissolved or associated with particulate matter (including living and nonliving material) suspended in the water column. A small proportion of PCBs may also be transported as part of the body burden of fish and wildlife. During the period May 13, 2005 to April 28, 2006, about 5,100 g (3.8 L or 1 gal) of PCBs were transported from the Neponset River to the Neponset River Estuary. Generally, about one-half of these PCBs were dissolved in the water column and the other half were associated with particulate matter; however, the proportion that was either dissolved or particulate varied seasonally. Most PCBs transported from the river to the estuary are composed of four or fewer chlorine atoms per biphenyl molecule. The data suggest that widespread PCB contamination of the lower Neponset River originated from Mother Brook, a Neponset River tributary, starting sometime around the early 1950s or earlier. In 1955, catastrophic dam failure caused by flooding likely released PCB-contaminated sediment downstream and into the Neponset River Estuary. PCBs from this source area likely continued to be released after the flood and during subsequent rebuilding of downstream dams. Today (2007), PCBs are mostly trapped behind these dams; however, some PCBs either diffuse or are entrained back into the water column and are transported downstream by river water into the estuary or volatilize into the atmosphere. In addition to the continuing release of PCBs from historically contaminated bottom sediment, PCBs are still (2007) originating from source areas along Mother and Meadow Brook as well as other sources along the river and Boston Harbor. PCBs from the river (transported by river water) and from the harbor (transported by tidal action) appear to have contaminated parts of the Neponset River Estuary.

Massachusetts↗
USGS2025

Small waterbodies of large conservation concern: Towards an integrated approach to more accurately measuring surface water dynamics

Millions of small waterbodies are dispersed throughout the middle of the North American continent, and billions of dollars have been invested to conserve, restore, and manage these waterbodies in the 20th and 21st centuries. Small waterbody conservation has been supported by different stakeholders aiming at improving water quality, enhancing floodwater storage, and supporting migratory bird breeding habitat. Conservation agencies are using hydrological and biological monitoring, modeling, and mapping to adaptively manage small waterbodies in the face of stressors such as invasive species and climate change. As remote sensing estimates of small waterbody surface water extent have become easier to access, understanding the capabilities and limitations of using remote sensing, especially in areas lacking surface water monitoring, is important for conservation decision making. Here, we used in situ monitoring and process-based hydrological modeling to explore remote sensing accuracy, especially related to waterbody size, emergent aquatic vegetation cover, and climatic conditions. Overall, we found that the accuracy of satellite and aerial imagery surface water mapping approaches vastly decreased for waterbodies smaller than 2 ha. We also found emergent vegetation could be masking surface water in waterbodies larger than 2 ha and that accuracy of some remote sensing estimates may decrease during wetter climatic periods. These results indicate that sensors commonly used for surface water applications alone may not be able to accurately detect small waterbody surface water, which supports the need for combining monitoring and modeling to understand how small waterbodies may respond to future changes in climate and land use.

Minnesota↗
USGS2019

Landscape controls on the distribution and ecohydrology of central Oregon springs

Small springs in semiarid landscapes are essential for maintaining aquatic biodiversity and supporting livestock grazing operations. However, little is known about controls on the distribution and physical characteristics of small springs, the aquatic species they support, or their sensitivity to disturbance. We address this information gap in the Crooked River subbasin, a tributary of the Deschutes River in Oregon. We conducted spatial analyses on 2,519 mapped springs to investigate the influence of landscape controls (precipitation and bedrock permeability) on spring density in the Crooked River subbasin and the adjacent Upper Deschutes subbasin. Spring density was highest in areas of low bedrock permeability ( P < 0.0001) and high annual precipitation ( P < 0.0001). We suggest that the high density of small springs on low‐permeability bedrock indicates that these springs generally have short, shallow flow paths and thus may be susceptible to forecasted climate changes. A survey of 137 springs in the Crooked River subbasin revealed the hydrogeologic setting affects spring discharge type ( P = 0.017), temperature ( P = 0.011), and pH ( P = 0.026). We found a high frequency of anthropogenic impacts on springs: 95% of diffuse‐discharge springs and 79% of discrete‐discharge springs were disturbed by livestock grazing. Species inventories at 10 of the most intact surveyed springs confirm that small springs are biologically diverse, with 151 total species of plants and 135 total taxa of macroinvertebrates. Springs in the Crooked River subbasin are ecologically important habitats but require careful management to protect against livestock disturbance and development.

Oregon↗
USGS2023

Practical guide to measuring wetland carbon pools and fluxes

Wetlands cover a small portion of the world, but have disproportionate influence on global carbon (C) sequestration, carbon dioxide and methane emissions, and aquatic C fluxes. However, the underlying biogeochemical processes that affect wetland C pools and fluxes are complex and dynamic, making measurements of wetland C challenging. Over decades of research, many observational, experimental, and analytical approaches have been developed to understand and quantify pools and fluxes of wetland C. Sampling approaches range in their representation of wetland C from short to long timeframes and local to landscape spatial scales. This review summarizes common and cutting-edge methodological approaches for quantifying wetland C pools and fluxes. We first define each of the major C pools and fluxes and provide rationale for their importance to wetland C dynamics. For each approach, we clarify what component of wetland C is measured and its spatial and temporal representativeness and constraints. We describe practical considerations for each approach, such as where and when an approach is typically used, who can conduct the measurements (expertise, training requirements), and how approaches are conducted, including considerations on equipment complexity and costs. Finally, we review key covariates and ancillary measurements that enhance the interpretation of findings and facilitate model development. The protocols that we describe to measure soil, water, vegetation, and gases are also relevant for related disciplines such as ecology. Improved quality and consistency of data collection and reporting across studies will help reduce global uncertainties and develop management strategies to use wetlands as nature-based climate solutions.

Wetlands↗
USGS2024

Cytology in cnidaria using Exaiptasia as a model

A need exists for additional methods to examine cnidaria at the cellular level to aid our understanding of health, anatomy, and physiology of this important group of organisms. This need is particularly acute given that disease is emerging as a major factor in declines of ecologically important functional groups such as corals. Here we describe a simple method to process cnidarian cells for microscopic examination using the model organism Exaiptasia . We show that this organism has at least 18 cell types or structures that can be readily distinguished based on defined morphological features. Some of these cells can be related back to anatomic features of the animal both at the light microscope and ultrastructural level. The cnidome of Exaiptasia may be more complex than what is currently understood. Moreover, cnidarian cells, including some types of cnidocytes, phagocytize cells other than endosymbionts. Finally, our findings shed light on morphologic complexity of cell-associated microbial aggregates and their intimate intracellular associations. The tools described here could be useful for other cnidaria.

Diseases of Aquatic Organisms↗
USGS2019

One hundred pressing questions on the future of global fish migration science, conservation, and policy

Migration is a widespread but highly diverse component of many animal life histories. Fish migrate throughout the world's oceans, within lakes and rivers, and between the two realms, transporting matter, energy, and other species (e.g., microbes) across boundaries. Migration is therefore a process responsible for myriad ecosystem services. Many human populations depend on the presence of predictable migrations of fish for their subsistence and livelihoods. Although much research has focused on fish migration, many questions remain in our rapidly changing world. We assembled a diverse team of fundamental and applied scientists who study fish migrations in marine and freshwater environments to identify pressing unanswered questions. Our exercise revealed questions within themes related to understanding the migrating individual's internal state, navigational mechanisms, locomotor capabilities, external drivers of migration, the threats confronting migratory fish including climate change, and the role of migration. In addition, we identified key requirements for aquatic animal management, restoration, policy, and governance. Lessons revealed included the difficulties in generalizing among species and populations, and in understanding the levels of connectivity facilitated by migrating fishes. We conclude by identifying priority research needed for assuring a sustainable future for migratory fishes.

Frontiers in Ecology and Evolution↗
USGS2010

Invertebrate composition and abundance associated with Didymosphenia geminata in a montane stream

Didymosphenia geminata , a relatively new aquatic nuisance species that can form extensive, mucilaginous mats on stream substrates, was reported from Rapid Creek, South Dakota in 2002. To examine the association between D. geminata and the invertebrate community in Rapid Creek, macroinvertebrates were quantified using three gear types in the fall of 2006. D. geminata was present at two of four sites sampled (range = 5.53 to 809.68 g m &minus;2 dry mass). At each site, invertebrates were collected using dip nets, Surber samplers, and drift nets. The combined percentage of Ephemeroptera, Plecoptera, and Trichoptera in areas with D. geminata was lower (41%) than in areas without D. geminata (76%). Diptera abundance was higher at sites with D. geminata than in sites where D. geminata was absent.

Journal of Freshwater Ecology↗
USGS2018

Interior Least Tern sandbar nesting habitat measurements from Landsat Thematic Mapper imagery

Sandbars of large sand-bedded rivers of the central United States serve important ecological functions to many species, including the endangered Interior Least Tern ( Sternula antillarum , ILT). The ILT is a colonial bird that feeds on fish and nests primarily on riverine sandbars during its annual breeding season of around May through July, depending on region. During this time, ILTs require bare sand of sufficient elevation so as not to be inundated between nest initiation and fledging of hatchlings. Partly because of decreases in available sandbar habitat from river channelization and impoundment, ILTs were listed as endangered in 1985. Sandbars used by ILTs in central United States rivers are highly dynamic and undergo substantive changes across a wide range of temporal and spatial scales. River hydrology is the primary driver of sandbar morphodynamics in these systems. Better characterization of sandbar area with time, accounting for varying flow regimes, allows for a better understanding of landscape-scale ecology for sandbar-dependent species such as the ILT. This work uses remote-sensing techniques to quantify sandbar area that may be used by ILTs at the land-scape scale and how it has changed with time. The assessment of landscape-scale trends in sandbar area with time requires datasets with high temporal resolution and long record periods covering large geographic areas. Evaluation of remotely sensed datasets requires consideration of river stage fluctuations. To make this assessment, we developed land-cover classification datasets within active channel masks using all available images from the Landsat Thematic Mapper series of satellites meeting cloud-free (40 percent or less) and ice-free criteria. Landsat imagery was selected because of its long record period, spatial coverage, and regular reimaging cycle, making it well suited to monitor ILT sandbar habitat with time. We also attributed each scene with discharge or stage using a new database integrating U.S. Geological Survey and U.S. Army Corps of Engineers river data with Landsat metadata. This report documents development of these riverine classification datasets with a focus on applicability to the ILT. This framework may be used to continue monitoring the ILT sandbar nesting habitat or to evaluate other aquatic and terrestrial species whose life cycles are related to sandbars and channel complexity.

Data Series↗