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USGS2001

Newly emergent and future threats of alien species to Pacific birds and ecosystems

Although the devastating effects of established alien species to Pacific birds and ecosystems are generally well recognized by the avian conservation community, we raise the under appreciated issue of effects of incipient and future invasions. Although special attention to Pacific bird species “on the brink” is to a certain extent appropriate and necessary, a comparable focus on stopping new invasions appears desperately needed. All indications suggest that introductions will escalate with the trend toward ever increasing commerce and unrestricted trade unless stronger preventative measures are implemented very soon. The threat to Pacific island avifaunas from the brown tree snake ( Bniga irregularis ) is well-known, but as many as several hundred of the world’s snake species, some of which are repeatedly smuggled illegally as pets, might have similar impacts on native birds if transported to Pacific islands. We touch upon a sampling of obviously severe potential future threats, with the hope of raising awareness and resolve to fix the current woefully inadequate system for prevention of and rapid response to new invasions.

Studies in Avian Biology↗

USGS2010

Hydrogeomorphic segments and hydraulic microhabitats of the Niobrara River, Nebraska— With special emphasis on the Niobrara National Scenic River

The Niobrara River is an ecologically and economically important resource in Nebraska. The Nebraska Department of Natural Resources’ recent designation of the hydraulically connected surface- and groundwater resources of the Niobrara River Basin as “fully appropriated” has emphasized the importance of understanding linkages between the physical and ecological dynamics of the Niobrara River so it can be sustainably managed. In cooperation with the Nebraska Game and Parks Commission, the U.S. Geological Survey investigated the hydrogeomorphic and hydraulic attributes of the Niobrara River in northern Nebraska. This report presents the results of an analysis of hydrogeomorphic segments and hydraulic microhabitats of the Niobrara River and its valley for the approximately 330-mile reach from Dunlap Diversion Dam to its confluence with the Missouri River. Two spatial scales were used to examine and quantify the hydrogeomorphic segments and hydraulic microhabitats of the Niobrara River: a basin scale and a reach scale. At the basin scale, digital spatial data and hydrologic data were analyzed to (1) test for differences between 36 previously determined longitudinal hydrogeomorphic segments; (2) quantitatively describe the hydrogeomorphic characteristics of the river and its valley; and (3) evaluate differences in hydraulic microhabitat over a range of flow regimes among three fluvial geomorphic provinces. The statistical analysis of hydrogeomorphic segments resulted in reclassification rates of 3 to 28 percent of the segments for the four descriptive geomorphic elements. The reassignment of classes by discriminant analysis resulted in a reduction from 36 to 25 total hydrogeomorphic segments because several adjoining segments shared the same ultimate class assignments. Virtually all of the segment mergers were in the Canyons and Restricted Bottoms (CRB) fluvial geomorphic province. The most frequent classes among hydrogeomorphic segments, and the dominant classes per unit length of river, are: a width-restricted valley confinement condition, sinuous-planview pattern, irregular channel width, and an alternate bar configuration. The Niobrara River in the study area flows through a diversity of fluvial geomorphic settings in its traverse across northern Nebraska. In the Meandering Bottoms (MB) fluvial geomorphic province, river discharge magnitudes are low, and the valley exerts little control on the channel-planview pattern. Within the CRB province, the river flows over a diversity of geologic formations, and the valley and river narrow and expand in approximate synchronicity. In the Braided Bottoms (BB) fluvial geomorphic province, the river primarily flows over Cretaceous Pierre Shale, the valley and channel are persistently wide, and the channel slope is generally uniform. The existence of vegetated islands and consequent multithread channel environments, indicated by a higher braided index, mostly coincided with reaches having gentler slopes and less unit stream power. Longitudinal hydrology curves indicate that the flow of the Niobrara River likely is dominated by groundwater as far downstream as Norden. Unit stream power values in the study area vary between 0 and almost 2 pounds per foot per second. Within the MB province, unit stream power steadily increases as the Niobrara gains discharge from groundwater inflow, and the channel slope steepens. The combination of steep slopes, a constrained channel width, and persistent flow within the CRB province results in unit stream power values that are between three and five times greater than those in less confined segments with comparable or greater discharges. With the exception of hydrogeomorphic segment 3, which is affected by Spencer Dam, unit stream power values in the BB province are generally uniform. Channel sinuosity values in the study area varied generally between 1 and 2.5, but with locally higher values measured in the MB province and at the entrenched bedrock meanders of hydrogeomorphic segment 18 in the CRB province. The differences in channel morphology and hydraulic geometries between fluvial geomorphic provinces are evident in the types, relative abundance, and response of hydraulic microhabitats to changing discharges. The four gaging stations chosen for hydraulic microhabitat analysis are distributed among three different fluvial geomorphic provinces. In the MB province, the smaller channel and lower discharges resulted in the dominance of shallow and intermediate-depth hydraulic environments with the vast majority of hydraulic microhabitat restricted to shallow categories even during upper-decile discharges. In the CRB province, intermediate depth hydraulic conditions, particularly intermediate-swift, dominate over all ranges of discharge. Hydraulic microhabitat conditions were most diverse in the BB province, with most hydraulic microhabitat categories present over the entire range of discharges analyzed. The calculated differences in hydraulic microhabitat distributions, abundance, and adjustments between streamflow-gaging stations were the result of differences in physical structure of the channel and subsequent channel hydraulic geometry. At the reach scale, field measurements made in water years 2008 and 2009 in four study reaches within the Scenic Reach were used to (1) characterize the elevation and geomorphic processes associated with fluvial landforms, (2) build hydraulic geometry relations, (3) examine flow hydraulics over a range of discharges, and (4) examine the types and responses of hydraulic microhabitats to a range of flow magnitudes. Four landform groups were identified and named in order of increasing elevation: low flood plains, intermediate flood plains, low terraces, and high terraces. The terraces were poorly characterized because the surveys did not extend across the full width of the alluvial valley bottom. The two lowest fluvial landforms are likely active in the modern hydroclimatic regime. Sediment samples obtained in the study reaches indicate that the primary bed material in the active channel ranged in size from coarse silt to coarse sand. Grain-size distributions from samples also indicate that the bed of the Niobrara River among the study reaches coarsens and has increasing grainsize variability in the downstream direction. Values of at-a-station hydraulic geometry exponents indicate that the Niobrara River in the study reaches adjusts its geometry to changing discharges primarily through increases in flow depth and velocity. Relations at one cross section indicated that, at least locally, changes in width were also an important channel adjustment mechanism. Hydraulic behavior over the range of flows measured was not consistent among all study reaches, but two general modes of hydraulic behavior were observed in the reaches with substantial coverage of the bed by fine sediment. At the Sunny Brook and Muleshoe study reaches, average boundary-shear stress remained approximately constant, and hydraulic resistance decreased, for discharges below 900 cubic feet per second (ft 3 /s). Above 900 ft 3 /s, average boundary shear stress and hydraulic resistance both increased. The Rock Barn study reach did not exhibit the same two-mode hydraulic behavior observed at the Sunny Brook and Muleshoe reaches. The coincident increase in boundary shear stress above 900 ft 3 /s observed at the Sunny Brook and Muleshoe study reaches represents a potential hydraulic threshold above which bedload transport rates were likely to increase markedly. No consistent bed-adjustment pattern (scour or fill) was identified in the study reaches over the range of flows or over the measurement season. Analysis of hydraulic microhabitats over the range of discharges measured at the study reaches indicates that some percentage of most habitat niche categories was available for at least one discharge condition, but the majority of hydraulic habitat available was within the intermediate-swift and deepswift habitat niche categories. Deep-swift conditions dominated nearly all study reaches under all measured discharge conditions. Slight differences in habitat distributions were observed between the study reaches with substantial coverage of the bed by fine sediment—Sunny Brook, Muleshoe, and Rock Barn—and the bedrock-dominated reach, Crooked Creek. Although the four study reaches occupy three different hydrogeomorphic segments, the types, relative abundance, and response of hydraulic microhabitat niche distributions to changing discharge conditions generally were similar among all reaches.

Nebraska↗

USGS1990

Seismic imaging of extended crust with emphasis on the western United States

Understanding of the crust has improved dramatically following the application of seismic reflection and refraction techniques to studies of the deep crust. This is particularly true in areas where the last tectonic event was extensional, such as the Basin and Range province of the western United States and much of western Europe. In these regions, a characteristic reflective pattern has emerged, whereby the lower crust is highly reflective and the upper crust and upper mantle are either poorly reflective or strikingly nonreflective. In the metamorphic-core-complex belt in the western United States, where extension can be as much as an order of magnitude greater than in the more classic continental rift zones, the lower crustal reflectivity thickens and rises, yielding a picture of a crust that is reflective throughout. Synthetic seismic studies have documented that the reflectivity in these regions can be modeled by numerous laminae tens of meters thick and hundreds of meters across, characterized by inter-layered high and low velocities. Two geologic factors are interpreted as contributing to this layered character: ductile strain, responding to stress in the thermally weakened middle and lower crust, and intrusive layering, corresponding to injection of subhorizontal sheets of mantle-derived magmas. These two processes yield a variety of geologic structures, including transposed compositional layering, mylonitic ductile shear zones, and intrusive mafic sheets, all of which occur at the proper scales to cause the prominent reflectivity observed. If metamorphic core complexes are representative of extended continental crust world-wide, then these results suggest that magmatism and ductile flow have also contributed to the evolution of the middle and lower crust in many other areas around the world.

Special Papers of the Geological Society of Americ↗

USGS1964

Simazine and other s-triazine compounds as aquatic herbicides in fish habitats

This investigation studied simazine (2-chloro-4,6-bis(ethylamino)- s -triazine), atrazine (2-chloro-4-ethylamino-6-isopropylamino- s -triazine), propazine (2-chloro-4,6-bis(isopropylamino)- s -triazine), and prometone (2-methoxy-4,6-bis(isopropylamino)- s -triazine). Preemergence applications of granular formulations of simazine on attaclay or calcium sulfate of simazine at 1 to 2 ppmw controlled Potamogeton , Najas , Ceratophyllum , Heteranthera and Zannichelli a. Higher rates were required to control filamentous algae ( Cladophora and Pithophora ) and chara ( Chara vulgaris ). Early postemergence applications of wettable powder to submersed aquatics and filamentous algae were often effective. Atrazine gave similar results. Concentrations of 0.5 to 1.0 were effective in controlling Cladophora and Pithophora and three species of Potamogeton in pond applications. Spray applications, generally, were more effective than broadcasting granular atrazine. Propazine and prometone did not control submersed species in concentrations up to 3 ppmw. Simazine had a relatively high margin of safety with respect to acute toxicity to fish. It was less toxic than propazine, prometone or atrazine. Granular forms were less toxic than wettable powder or emulsifiable concentrates. Laboratory tests on bottom organisms gave an acute LD 50 toxic dosage of 28 ppmw. Field observations did not demonstrate a serious reduction in the production of bottom organisms. However, the control of aquatic vegetation brought about ecological changes affecting bottom dwelling and weed clinging organisms. These changes would affect certain fishes with special food habits.

Weeds↗

USGS2026

Combining individual and close-kin mark–recapture to design an effective wildlife population survey

Close-kin mark–recapture (CKMR) is a promising approach for assessing population size of species that have been difficult to survey using more traditional methods. Here, we combine individual and close-kin mark–recapture in a single modeling framework (ICKMR) and provide an example of study design using this approach for Pacific walrus ( Odobenus rosmarus divergens ). We develop the ICKMR model and test it using simulated datasets, then use properties of the pseudo-likelihood to investigate the expected precision in estimates of abundance with different proposed survey designs. Our motivating example, the Pacific walrus, is an ice-associated marine mammal found in the Bering and Chukchi seas, where it is an important resource for Indigenous peoples. Pacific walrus abundance declined in the late 20th century, and it is currently a species of conservation concern due to potential impacts of climate change, particularly the loss of sea ice. To reduce uncertainty in population size estimates, researchers undertook a genetic mark–recapture sampling campaign from 2013 to 2017 and collected tissue samples from over 8000 individuals. Another campaign of a similar scale is ongoing (2023–2028). While sample collection was designed for individual mark–recapture, advances in CKMR methods and associated molecular techniques mean that these samples could also be suitable for CKMR. The advantages of CKMR over mark–recapture include an increased effective sample size (because each individual tags itself and its parents, siblings, and offspring) and additional insights into demographic quantities of interest. To make best use of genetic samples, we combine individual mark–recapture (IMR) with CKMR (ICKMR) and investigate whether different sampling strategies can increase precision in estimates of abundance. Our modeling approach includes special considerations for walrus life history, including a multi-year inter-birth interval. We found that expected coefficients of variation (CVs) of the ICKMR estimates of abundance, adult female survival, juvenile female survival, and proportion of breeding females are lower than those expected from IMR alone, and with ICKMR, fewer years of sampling can be conducted to obtain sufficient precision in estimates of abundance. This work demonstrates the utility of ICKMR and could be applicable across a variety of taxa.

Ecology↗

USGS2024

Evaluating mountain lion diet before and after a removal of feral horses in a semiarid environment

Non-native species can affect ecosystems by influencing native predator-prey dynamics. Therefore, management interventions designed to remove non-natives may inadvertently lead to increased predation on native species. Feral horses are widely distributed throughout the arid parts of western North America. A growing body of research indicates that horses can be an important prey species to mountain lions in ecosystems where they overlap. In December 2020, the Bureau of Land Management removed 455 horses from the Delamar Mountains, Nevada, USA. We leveraged this management intervention to implement a before–after–control–impact study to test hypotheses about predation on horses and native ungulates. We predicted (1) that horses would comprise an important part of the diet in this mixed-prey community, (2) following removal, the proportion of horses in the diet would decrease and native ungulates would increase, and (3) mountain lion home ranges overlapping the treatment areas would increase in response to decreased prey availability. From 2018 to 2022, we investigated 1360 clusters from 29 GPS-collared lions and identified 1056 prey items. To model the probability of a predation event (a kill), we fit a mixed-effects logistic regression model for ungulate prey as a function of lion sex, treatment area (in/out), and treatment period (pre-/post-removal). We used a log-linear regression model to evaluate changes in home range size. The most common prey were mule deer (55%), feral horses (32%), and coyotes (4%). Twenty-two of 29 lions consumed horses, although the rate of horse consumption was highly variable across individuals. Horses of both sexes and all age classes were predated. In contrast to predictions, our models detected no effect of removals on diet composition (β interaction = 0.30 ± 1.1), nor did the removal influence home range size (β interaction = 0.02 ± 0.02). Despite a 46% reduction in horse abundance, we found no evidence for prey-switching following the horse removal treatment. Removal magnitude, rapid horse immigration, and/or behavioral specialization of individual mountain lions may help explain these results. Our findings have important implications for mountain lion and feral horse management in arid environments characterized by high prey diversity, but low prey abundance.

Nevada↗

USGS2010

Two mechanisms of aquatic and terrestrial habitat change along an Alaskan Arctic coastline

Arctic habitats at the interface between land and sea are particularly vulnerable to climate change. The northern Teshekpuk Lake Special Area (N-TLSA), a coastal plain ecosystem along the Beaufort Sea in northern Alaska, provides habitat for migratory waterbirds, caribou, and potentially, denning polar bears. The 60-km coastline of N-TLSA is experiencing increasing rates of coastline erosion and storm surge flooding far inland resulting in lake drainage and conversion of freshwater lakes to estuaries. These physical mechanisms are affecting upland tundra as well. To better understand how these processes are affecting habitat, we analyzed long-term observational records coupled with recent short-term monitoring. Nearly the entire coastline has accelerating rates of erosion ranging from 6 m/year from 1955 to 1979 and most recently peaking at 17 m/year from 2007 to 2009, yet an intensive monitoring site along a higher bluff (3–6 masl) suggested high interannual variability. The frequency and magnitude of storm events appears to be increasing along this coastline and these patterns correspond to a greater number of lake tapping and flooding events since 2000. For the entire N-TLSA, we estimate that 6% of the landscape consists of salt-burned tundra, while 41% is prone to storm surge flooding. This offset may indicate the relative frequency of low-magnitude flood events along the coastal fringe. Monitoring of coastline lakes confirms that moderate westerly storms create extensive flooding, while easterly storms have negligible effects on lakes and low-lying tundra. This study of two interacting physical mechanisms, coastal erosion and storm surge flooding, provides an important example of the complexities and data needs for predicting habitat change and biological responses along Arctic land–ocean interfaces.

Alaska↗

USGS2006

High tides and rising seas: potential effects on estuarine waterbirds

Coastal waterbirds are vulnerable to water-level changes especially under predictions of accelerating sea-level rise and increased storm frequency in the next century. Tidal and wind-driven fluctuations in water levels affecting marshes, their invertebrate communities, and their dependent waterbirds are manifested in daily, monthly, seasonal, annual, and supra-annual (e.g., decadal or 18.6-yr) periodicities. Superimposed on these cyclic patterns is a long-term (50?80 yr) increase in relative sea-level rise that varies from about 2?4 + mm/yr along the Atlantic coastline. At five study sites selected on marsh islands from Cape Cod, Massachusetts to coastal Virginia, we monitored marsh elevation changes and flooding, tide variations over time, and waterbird use. We found from longterm marsh core data that marsh elevations at three of five sites may not be sufficient to maintain pace with current sea-level rise. Results of the short-term (3?4 yr) measures using surface elevation tables suggest a more dramatic difference, with marsh elevation change at four of five sites falling below relative sea-level rise. In addition, we have found a significant increase (in three of four cases) in the rate of surface marsh flooding in New Jersey and Virginia over the past 70?80 yr during May?July when waterbirds are nesting on or near the marsh surface. Short-term, immediate effects of flooding will jeopardize annual fecundity of many species of concern to federal and state agencies, most notably American Black Duck (Anas rubripes), Nelson?s Sharp-tailed Sparrow (Ammodramus nelsoni), Saltmarsh Sharp-tailed Sparrow (A. caudacutus), Seaside Sparrow (A. maritima), Coastal Plain Swamp Sparrow (Melospiza georgiana nigrescens), Black Rail (Laterallus jamaicensis), Forster?s Tern (Sterna forsteri), Gull-billed Tern (S. nilotica), Black Skimmer (Rynchops niger), and American Oystercatcher (Haemotopus palliatus). Forster?s Terns are probably most at risk given the large proportion of their breeding range in the mid-Atlantic and their saltmarsh specialization. At a scale of 1?2 decades, vegetation changes (saltmeadow cordgrass [Spartina patens] and salt grass [Distichlis spicata] converting to smooth cordgrass [Spartina alternifl ora]), interior pond expansion and erosion of marshes will reduce nesting habitat for many of these species, but may enhance feeding habitat of migrant shorebirds and/or migrant or wintering waterfowl. At scales of 50?100 yr, reversion of marsh island complexes to open water may enhance populations of open-bay waterfowl, e.g., Bufflehead (Bucephala albeola) and Canvasback (Aythya valisneria), but reduce nesting habitats dramatically for the above named marsh-nesting species, may reduce estuarine productivity by loss of the detrital food web and nursery habitat for fish and invertebrates, and cause redistribution of waterfowl, shorebirds, and other species. Such scenarios are more likely to occur in the mid- and north Atlantic regions since these estuaries are lower in sediment delivery on average than those in the Southeast. A simple hypothetical example from New Jersey is presented where waterbirds are forced to shift from submerged natural marshes to nearby impoundments, resulting in roughly a 10-fold increase in density. Whether prey fauna are sufficiently abundant to support this level of increase remains an open question, but extreme densities in confined habitats would exacerbate competition, increase disease risk, and possibly increase predation.

Book chapter↗

USGS2005

An onboard data analysis method to track the seasonal polar caps on Mars

The Martian seasonal CO2 ice caps advance and retreat each year. They are currently studied using instruments such as the THermal EMission Imaging System (THEMIS), a visible and infra-red camera on the Mars Odyssey spacecraft [1]. However, each image must be downlinked to Earth prior to analysis. In contrast, we have developed the Bimodal Image Temperature (BIT) histogram analysis method for onboard detection of the cap edge, before transmission. In downlink-limited scenarios when the entire image cannot be transmitted, the location of the cap edge can still be identified and sent to Earth. In this paper, we evaluate our method on uncalibrated THEMIS data and find 1) agreement with manual cap edge identifications to within 28.2 km, and 2) high accuracy even with a smaller analysis window, yielding large reductions in memory requirements. This algorithm is currently being considered as a capability enhancement for the Odyssey second extended mission, beginning in fall 2006.

European Space Agency, (Special Publication) ESA S↗

USGS2015

An evaluation of the efficiency of minnow traps for estimating the abundance of minnows in desert spring systems

Desert springs are sensitive aquatic ecosystems that pose unique challenges to natural resource managers and researchers. Among the most important of these is the need to accurately quantify population parameters for resident fish, particularly when the species are of special conservation concern. We evaluated the efficiency of baited minnow traps for estimating the abundance of two at-risk species, Foskett Speckled Dace Rhinichthys osculus ssp. and Borax Lake Chub Gila boraxobius , in desert spring systems in southeastern Oregon. We evaluated alternative sample designs using simulation and found that capture–recapture designs with four capture occasions would maximize the accuracy of estimates and minimize fish handling. We implemented the design and estimated capture and recapture probabilities using the Huggins closed-capture estimator. Trap capture probabilities averaged 23% and 26% for Foskett Speckled Dace and Borax Lake Chub, respectively, but differed substantially among sample locations, through time, and nonlinearly with fish body size. Recapture probabilities for Foskett Speckled Dace were, on average, 1.6 times greater than (first) capture probabilities, suggesting “trap-happy” behavior. Comparison of population estimates from the Huggins model with the commonly used Lincoln–Petersen estimator indicated that the latter underestimated Foskett Speckled Dace and Borax Lake Chub population size by 48% and by 20%, respectively. These biases were due to variability in capture and recapture probabilities. Simulation of fish monitoring that included the range of capture and recapture probabilities observed indicated that variability in capture and recapture probabilities in time negatively affected the ability to detect annual decreases by up to 20% in fish population size. Failure to account for variability in capture and recapture probabilities can lead to poor quality data and study inferences. Therefore, we recommend that fishery researchers and managers employ sample designs and estimators that can account for this variability.

Oregon↗

USGS2025

Metal fingerprints of Eocene rhyolite magmas coincident with Carlin-type gold deposition in Nevada USA

Eocene magmatic systems contemporaneous with world-class Carlin-type Au deposits in Nevada (USA) have been proposed by some researchers as a key ingredient for Au mineralization, though evidence conclusively demonstrating their genetic relationship remains tenuous. This study provides the first direct evidence of the pre-eruptive metal budget of volatile- and metal-charged silicic magmas coincident in time (~41 to 34 Ma) and space (within 5 km) with Carlin-type Au deposits. We characterize the pre-eruptive metal fingerprints of these diverse magmatic systems to assess their potential as sources of metals for Carlin-type Au mineralization. Metal abundances from quartz-hosted melt inclusions (Au, Te, Ag, Sb, Tl, Mo, W, Sn, As, Pb, Co, Cu, Ni, and Zn) characterized in situ by SHRIMP-RG and LA-ICP-MS represent our best (and only) estimates for the pre-eruptive metal budget in these systems. Median metal concentrations are generally within one order of magnitude of average upper crust and average continental rhyolite values. But there are two notable exceptions, with median Au contents extending >1 order of magnitude higher than average upper crust and median Cu contents ranging >1 order of magnitude lower than upper crust. Despite this, melts contain lower Au/Cu (<0.1), Au/Ag (<5), and Au/Tl (<0.3) than most ore-grade Carlin-type rock samples and quartz-hosted fluid inclusions, regardless of their age and timing relative to nearby Carlin-type Au mineralization. The metal fingerprints of these magmatic systems, de-fined both by traditional and multivariate compositional data analysis techniques, are distinct from one another. Yet none are particularly specialized, e.g., high Au/Cu, in terms of being ideal ingredients as postulated by magmatic models for Carlin-type Au mineralization. Magmatic Au contents do not appear to be correlated with rhyolite “flavors” in the way that Cu, Sn, and Nb contents are. Fluid/melt partitioning modeling and magma volume estimates support the idea that a diverse array of non-specialized silicic magmas could feasibly contribute some or potentially all of the Au, Ag, and Cu in Carlin-type systems. The compositional diversity among contemporaneous magmatic systems could possibly contribute to some of the diversity observed across Carlin-type Au districts in Nevada.

Nevada↗

USGS2023

Coproduction and modeling spatial contact networks prevent bias about infectious hematopoietic necrosis virus transmission for Snake River Basin salmonids

Much remains unknown about variation in pathogen transmission across the geographic range of a free-ranging fish or animal species and about the influence of movement (associated with husbandry practices or animal behavior) on pathogen transmission. Salmonid hatcheries are an ideal system in which to study these processes. Salmonid hatcheries are managed for endangered species recovery, supplementation of threatened or at-risk fish stocks, support of fisheries, and ecosystem stability. Infectious hematopoietic necrosis virus (IHNV) is a rhabdovirus of significant concern to salmon aquaculture. Landscape IHNV transmission dynamics previously had been estimated only for salmonid hatcheries in the Lower Columbia River Basin (LCRB). The objectives of this study were to estimate IHNV transmission dynamics in a unique geographic region, the Snake River Basin (SRB), and to quantitatively estimate the effect of model coproduction on inference because previous assessments of coproduction have been qualitative. In contrast to the LCRB, the SRB has hatchery complexes consisting of a main hatchery and ≥1 satellite facility. Knowledge about hatchery complexes was held by a subset of project researchers but would not have been available to project modelers without coproduction. Project modelers generated and tested multiple versions of Bayesian susceptible-exposedinfected models to realistically represent the SRB and estimate the effect of coproduction. Models estimated the frequency of transmission routes, route-specific infection probabilities, and infection probabilities for combinations of salmonid hosts and IHNV lineages. Model results indicated that in the SRB, avoiding exposure to IHNV-positive adult salmonids is the most important action to prevent juvenile infections. Migrating adult salmonids exposed juvenile cohort-sites most frequently, and the infection probability was greatest following exposure to migrating adults. Without coproduction, the frequency of exposure by migrating adults would have been overestimated by 70 cohort-sites, and the infection probability following exposure to migrating adults would have been underestimated by∼0.09. The coproduced model had less uncertainty in the infection probability if no transmission route could be identified (Bayesian credible interval (BCI) width = 0.12) compared to the model without coproduction (BCI width = 0.34). Evidence for virus lineage MD specialization on steelhead and rainbow trout (both Oncorhynchus mykiss) was apparent without model coproduction. In the SRB, we found a greater probability of virus lineage UC infection in Chinook salmon (Oncorhynchus tshawytscha) compared to in O. mykiss, whereas in the LCRB, UC more clearly exhibited a generalist approach. Coproduction influenced estimates that depended on transmission routes, which operated differently at main hatcheries and satellite sites within hatchery complexes. Hatchery complexes are found outside of the SRB and are not specific to salmonid hatcheries alone. There is great potential for coproduction and modeling spatial contact networks to advance understanding about infectious disease transmission in complex production systems and surrounding free-ranging animal populations.

Idaho, Oregon, Washington↗

USGS2016

Prioritizing avian species for their risk of population-level consequences from wind energy development

Recent growth in the wind energy industry has increased concerns about its impacts on wildlife populations. Direct impacts of wind energy include bird and bat collisions with turbines whereas indirect impacts include changes in wildlife habitat and behavior. Although many species may withstand these effects, species that are long-lived with low rates of reproduction, have specialized habitat preferences, or are attracted to turbines may be more prone to declines in population abundance. We developed a prioritization system to identify the avian species most likely to experience population declines from wind facilities based on their current conservation status and their expected risk from turbines. We developed 3 metrics of turbine risk that incorporate data on collision fatalities at wind facilities, population size, life history, species’ distributions relative to turbine locations, number of suitable habitat types, and species’ conservation status. We calculated at least 1 measure of turbine risk for 428 avian species that breed in the United States. We then simulated 100,000 random sets of cutoff criteria (i.e., the metric values used to assign species to different priority categories) for each turbine risk metric and for conservation status. For each set of criteria, we assigned each species a priority score and calculated the average priority score across all sets of criteria. Our prioritization system highlights both species that could potentially experience population decline caused by wind energy and species at low risk of population decline. For instance, several birds of prey, such as the long-eared owl, ferruginous hawk, Swainson’s hawk, and golden eagle, were at relatively high risk of population decline across a wide variety of cutoff values, whereas many passerines were at relatively low risk of decline. This prioritization system is a first step that will help researchers, conservationists, managers, and industry target future study and management activity.

PLoS ONE↗

USGS2011

Summary report of responses of key resources to the 2000 Low Steady Summer Flow experiment, along the Colorado River downstream from Glen Canyon Dam, Arizona

In the spring and summer of 2000, a series of steady discharges of water from Glen Canyon Dam on the Colorado River were used to evaluate the effects of aquatic habitat stability and water temperatures on native fish growth and survival, with a special focus on the endangered humpback chub (Gila cypha), downstream from the dam in Grand Canyon. The steady releases were bracketed by peak powerplant releases in late-May and early-September. The duration and volume of releases from the dam varied between spring and summer. The intent of the experimental hydrograph was to mimic predam river discharge patterns by including a high, steady discharge in the spring and a low, steady discharge in the summer. The hydrologic experiment was called the Low Steady Summer Flow (LSSF) experiment because steady discharges of 226 m3/s dominated the hydrograph for 4 months from June through September 2000. The experimental hydrograph was developed in response to one of the U.S. Fish and Wildlife Service's Recommended and Prudent Alternatives (RPA) in its Biological Opinion of the Operation of Glen Canyon Dam Final Environmental Impact Statement. The RPA focused on the hypothesis that seasonally adjusted steady flows were dam operations that might benefit humpback chub more than the Record of Decision operations, known as Modified Low Fluctuating Flow (MLFF) operations. Condensed timelines between planning and implementation (2 months) of the experiment and the time required for logistics, purchasing, and contracting resulted in limited data collection during the high-release part of the experiment that occurred in spring. The LSSF experiment is the longest planned hydrograph that departed from the MLFF operations since Record of Decision operations began in 1996. As part of the experiment, several studies focused on the responses of physical properties related to environments that young-of-year (YOY) native fish might occupy (for example, measuring mainstem and shoreline water temperature, and quantifying useable shorelines). The part of the hydrograph that included a habitat maintenance flow (a 4-day spike at a powerplant capacity of 877 m3/s) and sustained high releases in April and May (averaging 509 m3/s) resulted in sediment export to Lake Mead, the reservoir downstream from Glen Canyon Dam, which is outside the study area. Some mid-elevation sandbar building (between 566 and 877 m3/s stage elevations) occurred from existing sediment deposits rather than from sediment inputs from tributaries during the previous winter. Low releases in the summer combined with low tributary sediment inputs resulted in minor sediment accumulation in the study area. The September habitat maintenance flow reworked accumulated sediment and resulted in increases in the area of some backwaters. The mainstem water temperatures in the reach near the Little Colorado River during the LSSF experiment varied little from previous years. Mainstem water temperatures in western Grand Canyon average 17 to 20 degrees C. During the LSSF, backwaters warmed more than other shoreline environments during the day, but most backwaters returned to mainstem water temperatures overnight. Shoreline surface water temperatures from river mile (RM) 30 to 72 varied between 9 and 28 degrees C in the middle of the day in July. These temperatures are within the optimal temperature range for humpback chub growth and spawning, which is between 15 and 24 degrees C. How surface water temperatures transfer to subsurface water temperatures is unknown. Data collection associated with the response of fish to the 2000 LSSF hydrograph focused on fish growth and abundance along the Colorado River in Grand Canyon. The target resource, humpback chub and other native fishes, did not respond in a strongly positive or strongly negative manner to the LSSF hydrograph during the sampling period, which extended from June to September 2000. In 2000, the mean total length of YOY native fishes was similar to the mean

Arizona↗

USGS2009

Late Quaternary sediment-accumulation rates within the inner basins of the California Continental Borderland in support of geologic hazard evaluation

An evaluation of the geologic hazards of the inner California Borderland requires determination of the timing for faulting and mass-movement episodes during the Holocene. Our effort focused on basin slopes and turbidite systems on the basin floors for the area between Santa Barbara and San Diego, California. Dating condensed sections on slopes adjacent to fault zones provides better control on fault history where high-resolution, seismic-reflection data can be used to correlate sediment between the core site and the fault zones. This study reports and interprets 147 radiocarbon dates from 43 U.S. Geological Survey piston cores as well as 11 dates from Ocean Drilling Program Site 1015 on the floor of Santa Monica Basin. One hundred nineteen dates from 39 of the piston cores have not previously been published. Core locations were selected for hazard evaluation, but despite the nonuniform distribution of sample locations, the dates obtained for the late Quaternary deposits are useful for documenting changes in sediment-accumulation rates during the past 30 ka. Cores from basins receiving substantial sediment from rivers, i.e., Santa Monica Basin and the Gulf of Santa Catalina, show a decrease in sediment supply during the middle Holocene, but during the late Holocene after sea level had reached the current highstand condition, rates then increased partly in response to an increase in El Ni??o-Southern Oscillation events during the past 3.5 ka. ?? 2009 The Geological Society of America.

Special Paper of the Geological Society of America↗

USGS2002

Palynology and microstratigraphy of Cretaceous-Tertiary boundary sections in southwestern North Dakota

Palynology is used to bracket or pinpoint the Cretaceous - Tertiary (K-T) boundary in 17 measured sections near the contact of the Hell Creek Formation and the Ludlow Member of the Fort Union Formation in southwestern North Dakota . Palynostratigraphy is the most reliable method for locating the K-T extinction horizon - which defines the K-T boundary - in nonmarine rocks. The palynological database includes 110 taxa for which relative abundance or presence or absence data were recorded in more than 350 samples based on surveys of more than 700 000 specimens. These data from laterally extensive outcrops in the badlands along the Little Missouri River provide a temporal framework for concurrent studies in the area on megafossil paleobotany, vertebrate paleontology, lithostratigraphy, magnetostratigraphy, and chemostratigraphy. Palynology demonstrates extinction of 30% or more of the Maastrichtian palynoflora, including characteristic Maastrichtian taxa ("K taxa"), at the K-T boundary . Most of the palynomorph taxa discussed probably represent higher-level plant taxa (botanical genera or families). The K-T boundary is shown to be coincident with the Hell Creek-Fort Union formational contact at only two localities; it is as much as 2.7mabove the base of the Fort Union Formation at others. Thus, a distinctive interval of Fort Union strata of Cretaceous age is recognized that is characterized by occurrences of numerous K taxa, usually in low percentage abundance, up to the K-T boundary . This interval documents a regional paleoenvironmental change that is independent of the extinction event and that is important to understanding the K-T transition throughout western North America.

North Dakota↗

USGS2015

Determinants of public support for threatened and endangered species management: A case study of Cape Lookout National Seashore

Gaining public support for management actions is important to the success of public land management agencies' efforts to protect threatened and endangered species. This is especially relevant at national parks, where managers balance two aspects of their conservation mission: to protect resources and to provide for public enjoyment. This study examined variables potentially associated with support for management actions at Cape Lookout National Seashore, a unit of the National Park Service. Two visitor surveys were conducted at the park at different seasons, and a resident survey was conducted for households in Carteret County, North Carolina, where the park is located. The goal of the project was to provide park managers with information that may help with the development of communication strategies concerning the park's conservation mission. These communication strategies may help to facilitate mutual understanding and garner public support for management actions. Several variables were examined as potential determinants that park managers ought to consider when developing communication strategies. Multinomial logistic regression was applied to examine the relationships between these variables and the likelihood of support for or opposition to management actions. The variables examined included perceived shared values of park resources, general environmental attitudes, level of familiarity with park resources and regulations, knowledge about threatened and endangered species, level of trust in the decision-making process, and perceived shared values with park management. In addition, demographic variables such as income level, respondent age, residency status, and visitor type were also used. The results show that perceived values of threatened and endangered species, trust in park managers and the decision-making process, and perceived share values with park managers were among the strongest indicators of support for management actions. Different user groups also exhibited different levels of support, with groups engaged in specialized recreation activities (fishers) being the most likely to oppose management actions. While our findings are not surprising, they corroborate past research that has shown an effective communications strategy should be customized to target different audiences. In addition, management should focus on developing long-term relationships that build trust in and foster credibility of decision-making processes.

North Carolina↗

USGS2019

Rare earth element mineral deposits in the United States

Because of their unique special chemical properties, many of the metals in the group of rare earth elements (REEs) have essential applications in 21st century technologies. Examples of products that use REEs are cell phones, computers, fluorescent and light-emitting-diode lights, flat-screen television and computer monitors, and in high-strength magnets used by clean energy technologies such as the generators of wind turbines and batteries of hybrid and electric vehicles. REEs are used in many defense applications, such as in components of jet engines, missile guidance systems, antimissile defense systems, satellites, and communication systems. The rare earth elements have become vital to manufacturing numerous high-tech products, which has been accompanied by a large increase in their demand. At the same time, there has been concern by the United States and many other Nations about the near-monopoly of mining, processing, and supply of REEs from one Nation, China. Between 2011 and 2017, China produced approximately 84 percent of the world’s REEs, and during this time the United States only produced REEs between 2012 and 2015. The U.S. production came entirely from the Mountain Pass mine in California, providing only about 4 percent of the world REE supply. Because REEs are essential for technological applications and are primarily supplied by one Nation, there has been an increased concern in identifying new sources of REEs, including economic REE deposits. In response to these concerns, since 2009, the U.S. Geological Survey (USGS) has conducted numerous studies focused on the distribution, geology, and potential resources for the REE-bearing mineral deposits in the United States. The basic characteristics of mineral deposit types that host REE enrichments in the United Sates are summarized in this report, with selected examples. Several types of REE-enriched mineral deposits are reviewed, including deposits in carbonatites, alkaline igneous rocks, sedimentary phosphate-rich rocks (phosphorite), regions containing REE-rich veins, iron oxide deposits containing REE-bearing apatite, monazite-xenotime-bearing placer deposits (heavy-mineral sands), and ion-adsorption clay deposits (REE in granite-derived regolith). A better understanding of these mineral deposits will assist in identifying domestic resources to help alleviate the dependence on imported REEs. The economic development of REE mineral deposits is affected by many factors beyond mining, such as commodity prices and mineral processing costs. Most of the REEs are hosted by minerals that have complex chemical formulas; this presents more challenges to process and extract the REEs. Continued advancements and refinements in mineral processing techniques may allow REE deposits with complex mineralogy to be economically developed in the future.

Circular↗