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At least 1,009 records · Page 56Linked to original sources
USGS2009

Pathogenic prion protein is degraded by a manganese oxide mineral found in soils

Prions, the aetiological agents of transmissible spongiform encephalopathies, exhibit extreme resistance to degradation. Soil can retain prion infectivity in the environment for years. Reactive soil components may, however, contribute to the inactivation of prions in soil. Members of the birnessite family of manganese oxides (MnO 2 ) rank among the strongest natural oxidants in soils. Here, we report the abiotic degradation of pathogenic prion protein (PrP TSE ) by a synthetic analogue of naturally occurring birnessite minerals. Aqueous MnO 2 suspensions degraded the PrP TSE as evidenced by decreased immunoreactivity and diminished ability to seed protein misfolding cyclic amplification reactions. Birnessite-mediated PrP TSE degradation increased as a solution's pH decreased, consistent with the pH-dependence of the redox potential of MnO 2 . Exposure to 5.6 mg MnO2 ml -1 (PrP TSE :MnO 2 =1 : 110) decreased PrPTSE levels by ???4 orders of magnitude. Manganese oxides may contribute to prion degradation in soil environments rich in these minerals. ?? 2009 SGM.

Journal of General Virology↗
USGS2025

Integration of GNSS-R derived soil moisture into the USGS Wildland Fire Potential Index

Observations of soil moisture have been found to improve predictions of fire danger as soil moisture impacts both fuel load and fuel moisture. A relative soil moisture process was developed and integrated into the USGS Wildland Fire Potential Index data products. The process uses soil moisture estimates from the CYGNSS GNSS-R constellation and compares current to historical values which then modifies the fuel moisture term in the WFPI equations. Comparisons of WFPI with the soil moisture enhanced version over known large fire events indicate a potential improvement in predicting large fire probability. The goal of this process is to identify areas prone to large fire activity that can be used to target additional CYGNSS observations to assist with wildfire monitoring.

Conference Paper↗
USGS2022

Deconstructing the microbial necromass continuum to inform soil carbon sequestration

Microbial necromass is a large, dynamic and persistent component of soil organic carbon, the dominant terrestrial carbon pool. Quantification of necromass carbon stocks and its susceptibility to global change is becoming standard practice in soil carbon research. However, the typical proxies used for necromass carbon do not reveal the dynamic nature of necromass carbon flows and transformations within soil that ultimately determine necromass persistence. In this review, we define and deconstruct four stages of the necromass continuum: production, recycling, stabilization and destabilization. Current understanding of necromass dynamics is described for each continuum stage. We highlight recent advances, methodological limitations and knowledge gaps which need to be addressed to determine necromass pool sizes and transformations. We discuss the dominant controls on necromass process rates and aspects of soil microscale structure including biofilms and food web interactions. The relative importance of each stage of the continuum is then compared in contrasting ecosystems and for climate change drivers. From the perspective of the continuum, we draw three conclusions to inform future research. First, controls on necromass persistence are more clearly defined when viewed through the lens of the continuum; second, destabilization is the least understood stage of the continuum with recycling also poorly evidenced outside of a few ecosystems; and third, the response of necromass process rates to climate change is unresolved for most continuum stages and ecosystems. Future mechanistic research focused on the role of biotic and abiotic soil microscale structure in determining necromass process rates and the relative importance of organo–mineral and organo–organo interactions can inform necromass persistence in different climate change scenarios. Our review demonstrates that deconstructing the necromass continuum is key to predicting the vulnerability and persistence of necromass carbon in a changing world.

Functional Ecology↗
USGS2006

Multi-scale responses of soil stability and invasive plants to removal of non-native grazers from an arid conservation reserve

Disturbances and ecosystem recovery from disturbance both involve numerous processes that operate on multiple spatial and temporal scales. Few studies have investigated how gradients of disturbance intensity and ecosystem responses are distributed across multiple spatial resolutions and also how this relationship changes through time during recovery. We investigated how cover of non-native species and soil-aggregate stability (a measure of vulnerability to erosion by water) in surface and subsurface soils varied spatially during grazing by burros and cattle and whether patterns in these variables changed after grazer removal from Mojave National Preserve, California, USA. We compared distance from water and number of ungulate defecations — metrics of longer-term and recent grazing intensity, respectively, — as predictors of our response variables. We used information-theoretic analyses to compare hierarchical linear models that accounted for important covariates and allowed for interannual variation in the disturbance–response relationship at local and landscape scales. Soil stability was greater under perennial vegetation than in bare interspaces, and surface soil stability decreased with increasing numbers of ungulate defecations. Stability of surface samples was more affected by time since removal of grazers than was stability of subsurface samples, and subsurface soil stability in bare spaces was not related to grazing intensity, time since removal, or any of our other predictors. In the high rainfall year (2003) after cattle had been removed for 1–2 years, cover of all non-native plants averaged nine times higher than in the low-rainfall year (2002). Given the heterogeneity in distribution of large-herbivore impacts that we observed at several resolutions, hierarchical analyses provided a more complete understanding of the spatial and temporal complexities of disturbance and recovery processes in arid ecosystems.

California↗
USGS2009

The influence of microtopography on soil nutrients in created mitigation wetlands

This study explores the relationship between microtopography and soil nutrients (and trace elements), comparing results for created and reference wetlands in Virginia, and examining the effects of disking during wetland creation. Replicate multiscale tangentially conjoined circular transects were used to quantify microtopography both in terms of elevation and by two microtopographic indices. Corresponding soil samples were analyzed for moisture content, total C and N, KCl-extractable NH4-N and NO3-N, and Mehlich-3 extractable P, Ca, Mg, K, Al, Fe, and Mn. Means and variances of soil nutrient/element concentrations were compared between created and natural wetlands and between disked and nondisked created wetlands. Natural sites had higher and more variable soil moisture, higher extractable P and Fe, lower Mn than created wetlands, and comparatively high variability in nutrient concentrations. Disked sites had higher soil moisture, NH4-N, Fe, and Mn than did nondisked sites. Consistently low variances (Levene test for inequality) suggested that nondisked sites had minimal nutrient heterogeneity. Across sites, low P availability was inferred by the molar ratio (Mehlich-3 [P/(Al + Fe)] < 0.06); strong intercorrelations among total C, total N, and extractable Fe, Al, and P suggested that humic-metal-P complexes may be important for P retention and availability. Correlations between nutrient/element concentrations and microtopographic indices suggested increased Mn and decreased K and Al availability with increased surface roughness. Disking appears to enhance water and nutrient retention, as well as nutrient heterogeneity otherwise absent from created wetlands, thus potentially promoting ecosystem development. ?? 2008 Society for Ecological Restoration International.

Restoration Ecology↗
USGS2005

Field-scale investigation of infiltration into a compacted soil liner

Little field-scale research has been done to evaluate the effectiveness of compacted soil barriers in retarding the movement of water and leachates. In response to this need, the Illinois State Geological Survey constructed and instrumented an experimental compacted soil liner. Infiltration of water into the liner has been monitored for two years. The objectives of this investigation were to determine whether a soil liner could be constructed to meet the U.S. EPA's requirement for a saturated hydraulic conductivity of less than or equal to 1.0×10 −7 cm/s, to quantify the areal variability of the hydraulic properties of the liner, and to determine the transit time for water and tracers through the liner. The liner measures 8 m×15 m×0.9 m and was designed and constructed to simulate compacted soil liners built at waste disposal facilities. The surface of the liner was flooded to form a pond on April 12, 1988. Since flooding, infiltration has been monitored with four large-ring (LR) and 32 small-ring (SR) infiltrometers, and a water-balance (WB) method that accounted for total infiltration and evaporation. Ring-infiltrometer and WB data were analyzed using cumulative-infiltration curves to determine infiltration fluxes. The SR data are lognormally distributed, and the SR and LR data form two statistically distinct populations. Small-ring data are nearly identical with WB data; because there is evidence of leakage in the LRs, the SR and WB data are considered more reliable. Geostatistical analysis of the SR infiltration data revealed that the infiltration-flux data were unstructured (random) at scales greater than 0.8 m. This analysis shows that it is possible to construct a compacted soil liner with a uniformly low saturated hydraulic conductivity, and that classical statistics should adequately estimate the mean infiltration flux of the liner and the associated uncertainty in that value. Saturated hydraulic conductivity of the liner was estimated using Darcy's Law and the Green-Ampt Approximation; the average values for these calculations, based on the first and second years of SR data, were 4.0×10 −8 and 3.4×10 −8 cm/s, respectively. Breakthrough of water at the liner's bottom is expected to occur approximately six years after the initial ponding of the liner.

Groundwater↗
USGS2007

Soil gas screening for chlorinated solvents at three contaminated karst sites in Tennessee

Soil gas was sampled using active sampling techniques and passive collectors at three sites in Tennessee to evaluate the effectiveness of these techniques for locating chlorinated solvent sources and flowpaths in karst aquifers. Actively collected soil gas samples were analyzed in the field with a portable gas chromatograph, and the passive soil gas collectors were analyzed in the lab with gas chromatography/mass spectrometry. Results of the sampling indicate that the effectiveness of both techniques is highly dependent on the distribution of the contaminants in the subsurface, the geomorphic and hydrogeologic characteristics of the site, and, in one case, on seasonal conditions. Both active and passive techniques identified areas of elevated subsurface chlorinated solvent concentrations at a landfill site where contamination remains concentrated in the regolith. Neither technique detected chlorinated solvents known to be moving in the bedrock at a manufacturing site characterized by thick regolith and an absence of surficial karst features. Passive soil gas sampling had varied success detecting flowpaths for chloroform in the bedrock at a train derailment site characterized by shallow regolith and abundant surficial karst features. At the train derailment site, delineation of the contaminant flowpath through passive soil gas sampling was stronger and more detailed under Winter conditions than summer.

Tennessee↗
USGS2019

Microsite enhancements for soil stabilization and rapid biocrust colonization in degraded drylands

In dryland ecosystems, natural recovery of biological soil crusts (biocrusts) following disturbance may be slow or inhibited, necessitating active restoration practices. While biocrusts can be readily propagated under environmentally controlled conditions, rehabilitation in the field is complicated by environmental stresses which may be particularly acute in degraded, destabilized soils with harsh climatic conditions at the soil surface. In this study, we first present the results of a field trial at a severely degraded rangeland site examining the stabilizing effects of various soil amendments (polysaccharide glues and polyacrylamides) in combination with biocrust inoculum. We found that a psyllium compound was the only amendment to maintain effectiveness after 19 months, and the only treatment that maintained biocrust inoculum throughout the trial. In a subsequent short‐term experiment where plots were shaded and watered, we examined how biocrust inoculation rate (0, 20, and 40% initial cover) and the psyllium‐based amendment affected biocrust growth. After 4 months, visible biocrust cover in inoculated plots was greater than in controls, but only chlorophyll a exhibited a dosage‐response to inoculum application rate, indicating preferential establishment of cyanobacteria. Psyllium did not affect biocrust development but did improve soil stability. Shade and watering buffered against temperature extremes (up to 15°C) and increased the duration of moist surface conditions necessary for biocrust growth by up to 30%, mimicking conditions more common in the fall and winter months. Our results suggest that inducing early successional biocrusts on a highly degraded site is possible with suitable microclimate conditions.

Restoration Ecology↗
USGS2026

Alternative approaches to dryland reclamation enhance vegetation cover and soil stability at a former uranium mine

Introduction Conventional reclamation methods to recover dryland ecosystems after mineral extraction often have low success. Alternative reclamation techniques may help overcome the many challenges to establishing persistent native vegetation and stable soils. Objectives Compare conventional reclamation approaches that focus primarily on soil stabilization to alternative approaches that may improve native ecosystem restoration at the Kanab North Mine in northern Arizona. Methods In a fully crossed experiment, conventional seed mix (native and non-native species) and seeding methods (drill-seeding) were compared to alternative practices, including a native-only seed mix, connectivity modifiers (ConMods) with hand seeding, and a biocrust inoculation. Restoration metrics like plant establishment, species composition, soil surface cover and stability, biocrust establishment, and near-surface wind-driven sediment were monitored over the first 5 years post-reclamation. Results While all restoration metrics improved with time, compared to traditional methods, ConMods increased total, graminoid, and native plant species cover, and the native-only seed mix increased woody, native, and perennial species cover. Biocrust inoculation increased late-successional biocrust development, but biocrusts only persisted over 5 years in combination with ConMods. Soil stability increased in all treatments, but both ConMods and biocrust inoculation increased stability compared to traditional practices. Conclusion Overall, alternative approaches to reclamation tested here (ConMods, native seed, and biocrust inoculation) were more effective than traditional practices at increasing total plant cover, facilitating biocrust establishment, and promoting soil stability after uranium mine reclamation.

Arizona↗
USGS2013

Soil diversity and hydration as observed by ChemCam at Gale crater, Mars

The ChemCam instrument, which provides insight into martian soil chemistry at the submillimeter scale, identified two principal soil types along the Curiosity rover traverse: a fine-grained mafic type and a locally derived, coarse-grained felsic type. The mafic soil component is representative of widespread martian soils and is similar in composition to the martian dust. It possesses a ubiquitous hydrogen signature in ChemCam spectra, corresponding to the hydration of the amorphous phases found in the soil by the CheMin instrument. This hydration likely accounts for an important fraction of the global hydration of the surface seen by previous orbital measurements. ChemCam analyses did not reveal any significant exchange of water vapor between the regolith and the atmosphere. These observations provide constraints on the nature of the amorphous phases and their hydration.

Science↗
USGS1998

Sensitivity of boreal forest carbon balance to soil thaw

We used eddy covariance; gas-exchange chambers; radiocarbon analysis; wood, moss, and soil inventories; and laboratory incubations to measure the carbon balance of a 120-year-old black spruce forest in Manitoba, Canada. The site lost 0.3 ?? 0.5 metric ton of carbon per hectare per year (ton C ha-1 year-1) from 1994 to 1997, with a gain of 0.6 ?? 0.2 ton C ha-1 year-1 in moss and wood offset by a loss of 0.8 ?? 0.5 ton C ha-1 year-1 from the soil. The soil remained frozen most of the year, and the decomposition of organic matter in the soil increased 10-fold upon thawing. The stability of the soil carbon pool (~150 tons C ha-1) appears sensitive to the depth and duration of thaw, and climatic changes that promote thaw are likely to cause a net efflux of carbon dioxide from the site.

Science↗
USGS2016

Radiocarbon constraints imply reduced carbon uptake by soils during the 21st century

Soil is the largest terrestrial carbon reservoir and may influence the sign and magnitude of carbon cycle-climate feedbacks. Many Earth system models (ESMs) estimate a significant soil carbon sink by 2100, yet the underlying carbon dynamics determining this response have not been systematically tested against observations. We used 14C data from 157 globally distributed soil profiles sampled to 1 m depth to show that ESMs underestimated the mean age of soil carbon by more than six-fold (430±50 years vs. 3100±1800 years). Consequently, ESMs overestimated the carbon sequestration potential of soils by nearly two-fold (40±27%). These biases suggest that ESMs must better represent carbon stabilization processes and the turnover time of slow and passive reservoirs when simulating future atmospheric CO2 dynamics.

Science↗
USGS2015

Aspect-dependent soil saturation and insight into debris-flow initiation during extreme rainfall in the Colorado Front Range

Hydrologic processes during extreme rainfall events are poorly characterized because of the rarity of measurements. Improved understanding of hydrologic controls on natural hazards is needed because of the potential for substantial risk during extreme precipitation events. We present field measurements of the degree of soil saturation and estimates of available soil-water storage during the September 2013 Colorado extreme rainfall event at burned (wildfire in 2010) and unburned hillslopes with north- and south-facing slope aspects. Soil saturation was more strongly correlated with slope aspect than with recent fire history; south-facing hillslopes became fully saturated while north-facing hillslopes did not. Our results suggest multiple explanations for why aspect-dependent hydrologic controls favor saturation development on south-facing slopes, causing reductions in effective stress and triggering of slope failures during extreme rainfall. Aspect-dependent hydrologic behavior may result from (1) a larger gravel and stone fraction, and hence lower soil-water storage capacity, on south-facing slopes, and (2) lower weathered-bedrock permeability on south-facing slopes, because of lower tree density and associated deep roots penetrating bedrock as well as less intense weathering, inhibiting soil drainage.

Geology↗
USGS2012

Changes in faunal and vegetation communities along a soil calcium gradient in northern hardwood forests

Depletion of Ca from forest soils due to acidic deposition has had potentially pervasive effects on forest communities, but these impacts remain largely unknown. Because snails, salamanders, and plants play essential roles in the Ca cycle of northern hardwood forests, we hypothesized that their community diversity, abundance, and structure would vary with differences in biotic Ca availability. To test this hypothesis, we sampled 12 upland hardwood forests representing a soil Ca gradient in the Adirondack Mountains, New York (USA), where chronic deposition has resulted in acidified soils but where areas of well-buffered soils remain Ca rich due to parent materials. Along the gradient of increasing soil [Ca 2+ ], we observed increasing trends in snail community richness and abundance, live biomass of redback salamanders (Plethodon cinereus (Green, 1818)), and canopy tree basal area. Salamander communities were dominated by mountain dusky salamanders (Desmognathus ochrophaeus Cope, 1859) at Ca-poor sites and changed continuously along the Ca gradient to become dominated by redback salamanders at the Ca-rich sites. Several known calciphilic species of snails and plants were found only at the highest-Ca sites. Our results indicated that Ca availability, which is shaped by geology and acidic deposition inputs, influences northern hardwood forest ecosystems at multiple trophic levels, although the underlying mechanisms require further study.

New York↗
USGS2019

Uncertainty of reference pixel soil moisture averages sampled at SMAP core validation sites

Despite extensive efforts to maximize ground coverage and improve upscaling functions within core validation sites (CVS) of the NASA Soil Moisture Active/Passive (SMAP) mission, spatial averages of point-scale soil moisture observations often fail to accurately capture the true average of the reference pixels. Therefore, some level of pixel-scale sampling error from in situ observations must be considered during the validation of SMAP soil moisture retrievals. Here, uncertainties in the SMAP core site average soil moisture (CSASM) due to spatial sampling errors are examined and their impact on CSASM-based SMAP calibration and validation metrics is discussed. The estimated uncertainty (due to spatial sampling limitations) of mean CSASM over time is found to be large, translating into relatively large sampling uncertainty levels for SMAP retrieval bias when calculated against CSASM. As a result, CSASM-based SMAP bias estimates are statistically insignificant at nearly all SMAP CVS. In addition, observations from temporary networks suggest that these (already large) bias uncertainties may be underestimated due to under-sampled spatial variability. The unbiased root-mean-square error (ubRMSE) of CSASM is estimated via two approaches: classical sampling theory and triple collocation, both of which suggest that CSASM ubRMSE is generally within the range 0.01 to 0.02 m3/m3. Although limitations in both methods likely lead to underestimation of ubRMSE, the results suggest that CSASM captures the temporal dynamics of the footprint-scale soil moisture relatively well and is thus a reliable reference for SMAP ubRMSE calculations. Therefore, spatial sampling errors are revealed to have very different impacts on efforts to estimate SMAP bias and ubRMSE metrics using CVS data.

Journal of Hydrometeorology↗
USGS2025

Determination of provenance soil type using inductively coupled plasma mass spectrometry (ICP-MS) analyses of Pinus ponderosa ash

This study demonstrates the feasibility of determining soil provenance from tree ash composition using elemental analysis and chemometric techniques. To date, no published studies have applied chemometric approaches to classify ash for provenance determination following forest fires. In this work, Pinus ponderosa ash was analyzed to distinguish samples based on soil type and geographic location. Pinus ponderosa , a widely distributed pine species in the western United States where wildfires are prevalent, was selected as a model system. Needles were collected from trees grown in five distinct soil types across northern Arizona and Colorado, then dry-ashed under controlled conditions. Classification was performed using three preprocessing techniques and five machine learning algorithms, including hierarchical modeling structures to optimize separation. Partial least squares discriminant analysis (PLS-DA) following a Box-Cox transformation yielded the highest classification accuracy, achieving a prediction kappa value of 0.98 for soil type identification. However, classification performance decreased when distinguishing both soil type and geographic location, indicating that additional variability may influence predictive accuracy in broader applications. These findings highlight the potential of inductively coupled plasma mass spectrometry (ICP-MS) and machine learning for post-wildfire forensic analysis and environmental monitoring.

Applied Spectroscopy↗
USGS2021

Active virus-host interactions at sub-freezing temperatures in Arctic peat soil

Background Winter carbon loss in northern ecosystems is estimated to be greater than the average growing season carbon uptake and is primarily driven by microbial decomposers. Viruses modulate microbial carbon cycling via induced mortality and metabolic controls, but it is unknown whether viruses are active under winter conditions (anoxic and sub-freezing temperatures). Results We used stable isotope probing (SIP) targeted metagenomics to reveal the genomic potential of active soil microbial populations under simulated winter conditions, with an emphasis on viruses and virus-host dynamics. Arctic peat soils from the Bonanza Creek Long-Term Ecological Research site in Alaska were incubated under sub-freezing anoxic conditions with H 2 18 O or natural abundance water for 184 and 370 days. We sequenced 23 SIP-metagenomes and measured carbon dioxide (CO 2 ) efflux throughout the experiment. We identified 46 bacterial populations (spanning 9 phyla) and 243 viral populations that actively took up 18 O in soil and respired CO 2 throughout the incubation. Active bacterial populations represented only a small portion of the detected microbial community and were capable of fermentation and organic matter degradation. In contrast, active viral populations represented a large portion of the detected viral community and one third were linked to active bacterial populations. We identified 86 auxiliary metabolic genes and other environmentally relevant genes. The majority of these genes were carried by active viral populations and had diverse functions such as carbon utilization and scavenging that could provide their host with a fitness advantage for utilizing much-needed carbon sources or acquiring essential nutrients. Conclusions Overall, there was a stark difference in the identity and function of the active bacterial and viral community compared to the unlabeled community that would have been overlooked with a non-targeted standard metagenomic analysis. Our results illustrate that substantial active virus-host interactions occur in sub-freezing anoxic conditions and highlight viruses as a major community-structuring agent that likely modulates carbon loss in peat soils during winter, which may be pivotal for understanding the future fate of arctic soils' vast carbon stocks.

Microbiome↗
USGS2016

Inter-annual variability of area-scaled gaseous carbon emissions from wetland soils in the Liaohe Delta, China

Global management of wetlands to suppress greenhouse gas (GHG) emissions, facilitate carbon (C) sequestration, and reduce atmospheric CO 2 concentrations while simultaneously promoting agricultural gains is paramount. However, studies that relate variability in CO 2 and CH 4 emissions at large spatial scales are limited. We investigated three-year emissions of soil CO 2 and CH 4 from the primary wetland types of the Liaohe Delta, China, by focusing on a total wetland area of 3287 km 2 . One percent is Suaeda salsa , 24% is Phragmites australis , and 75% is rice. While S . salsa wetlands are under somewhat natural tidal influence, P . australis and rice are managed hydrologically for paper and food, respectively. Total C emissions from CO 2 and CH 4 from these wetland soils were 2.9 Tg C/year, ranging from 2.5 to 3.3 Tg C/year depending on the year assessed. Primary emissions were from CO 2 (~98%). Photosynthetic uptake of CO 2 would mitigate most of the soil CO 2 emissions, but CH 4 emissions would persist. Overall, CH 4 fluxes were high when soil temperatures were >18°C and pore water salinity <18 PSU. CH 4 emissions from rice habitat alone in the Liaohe Delta represent 0.2% of CH 4 carbon emissions globally from rice. With such a large area and interannual sensitivity in soil GHG fluxes, management practices in the Delta and similar wetlands around the world have the potential not only to influence local C budgeting, but also to influence global biogeochemical cycling.

Liaohe Delta↗