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At least 1,009 records · Page 56Linked to original sources
USGS2021

Exploiting common senses: Sensory ecology meets wildlife conservation and management

Multidisciplinary approaches to conservation and wildlife management are often effective in addressing complex, multi-factor problems. Emerging fields such as conservation physiology and conservation behaviour can provide innovative solutions and management strategies for target species and systems. Sensory ecology combines the study of ‘how animals acquire’ and process sensory stimuli from their environments, and the ecological and evolutionary significance of ‘how animals respond’ to this information. We review the benefits that sensory ecology can bring to wildlife conservation and management by discussing case studies across major taxa and sensory modalities. Conservation practices informed by a sensory ecology approach include the amelioration of sensory traps, control of invasive species, reduction of human–wildlife conflicts and relocation and establishment of new populations of endangered species. We illustrate that sensory ecology can facilitate the understanding of mechanistic ecological and physiological explanations underlying particular conservation issues and also can help develop innovative solutions to ameliorate conservation problems.

Conservation Physiology↗
USGS2007

Otolith research for Puget Sound

Otoliths are hard structures located in the brain cavity of fish. These structures are formed by a buildup of calcium carbonate within a gelatinous matrix that produces light and dark bands similar to the growth rings in trees. The width of the bands corresponds to environmental factors such as temperature and food availability. As juvenile salmon encounter different environments in their migration to sea, they produce growth increments of varying widths and visible 'checks' corresponding to times of stress or change. The resulting pattern of band variations and check marks leave a record of fish growth and residence time in each habitat type. This information helps Puget Sound restoration by determining the importance of different habitats for the optimal health and management of different salmon populations. The USGS Western Fisheries Research Center (WFRC) provides otolith research findings directly to resource managers who put this information to work.

Washington↗
USGS2009

The Ozark Highlands

The Ozark Highlands include diverse topographic, geologic, soil, and hydrologic conditions that support a broad range of habitat types. The landscape features rugged uplands - some peaks higher than 2,500 feet above sea level - with exposed rock and varying soil depths and includes extensive areas of karst terrain. The Highlands are characterized by extreme biological diversity and high endemism (uniqueness of species). Vegetation communities are dominated by open oak-hickory and shortleaf pine woodlands and forests. Included in this vegetation matrix is an assemblage of various types of fens, forests, wetlands, fluvial features, and carbonate and siliceous glades. An ever-growing human population in the Ozark Highlands has become very dependent on reservoirs constructed on major rivers in the region and, in some cases, groundwater for household and public water supply. Because of human population growth in the Highlands and increases in industrial and agricultural activities, not only is adequate water quantity an issue, but maintaining good water quality is also a challenge. Point and nonpoint sources of excessive nutrients are an issue. U.S. Geological Survey (USGS) partnership programs to monitor water quality and develop simulation tools to help stakeholders better understand strategies to protect the quality of water and the environment are extremely important. The USGS collects relevant data, conducts interpretive studies, and develops simulation tools to help stakeholders understand resource availability and sustainability issues. Stakeholders dependent on these resources are interested in and benefit greatly from evolving these simulation tools (models) into decision support systems that can be used for adaptive management of water and ecological resources. The interaction of unique and high-quality biological and hydrologic resources and the effects of stresses from human activities can be evaluated best by using a multidisciplinary approach that the USGS can provide. Information varying from defining baseline resource conditions to developing simulation models will help resource managers and users understand the human impact on resource sustainability. Varied expertise and experience in biological and water-resources activities across the entire Highlands make the USGS a valued collaborator in studies of Ozark ecosystems, streams, reservoirs, and groundwater. A large part of future success will depend on the involvement and active participation of key partners.

Fact Sheet↗
USGS2002

Atlas of water resources in the Black Hills area, South Dakota

The Black Hills area is an important resource center that provides an economic base for western South Dakota through tourism, agriculture, the timber industry, and mineral resources. In addition, water originating from the area is used for municipal, industrial, agricultural, and recreational purposes throughout much of western South Dakota. The Black Hills area also is an important recharge area for aquifers in the northern Great Plains. Population growth, resource development, and periodic droughts have the potential to affect the quantity, quality, and availability of water within the Black Hills area. Growth has resulted in competing interests for available water supplies. The Black Hills Hydrology Study was initiated in 1990 to address these concerns. This long-term study is a cooperative effort between the U.S. Geological Survey (USGS), the South Dakota Department of Environment and Natural Resources, and the West Dakota Water Development District, which represents various local and county cooperators.

Hydrologic Atlas↗
USGS2012

National assessment of shoreline change: Historical shoreline change in the Hawaiian Islands

Sandy beaches of the United States are some of the most popular tourist and recreational destinations. Coastal property constitutes some of the most valuable real estate in the country. Beaches are an ephemeral environment between water and land with unique and fragile natural ecosystems that have evolved in equilibrium with the ever-changing winds, waves, and water levels. Beachfront lands are the site of intense residential and commercial development even though they are highly vulnerable to several natural hazards, including marine inundation, flooding and drainage problems, effects of storms, sea-level rise, and coastal erosion. Because the U.S. population continues to shift toward the coast where valuable coastal property is vulnerable to erosion, the U.S. Geological Survey (USGS) is conducting a national assessment of coastal change. One aspect of this effort, the National Assessment of Shoreline Change, uses shoreline position as a proxy for coastal change because shoreline position is one of the most commonly monitored indicators of environmental change (for example, Fletcher, 1992; Dolan and others, 1991; Douglas and others, 1998; Galgano and others, 1998). Additionally, the National Research Council (1990) recommended the use of historical shoreline analysis in the absence of a widely accepted model of shoreline change. A principal purpose of the USGS shoreline change research is to develop a common methodology so that shoreline change analyses for the continental U.S., portions of Hawaii, and Alaska can be updated periodically in a consistent and systematic manner. The primary objectives of this study were to (1) develop and implement improved methods of assessing and monitoring shoreline movement, and (2) improve current understanding of the processes controlling shoreline movement. Achieving these ongoing long-term objectives requires research that (1) examines the original sources of shoreline data (for example, maps, air photos, global positioning system (GPS), Light Detection and Ranging (lidar)); (2) evaluates the utility of different shoreline proxies (for example, geomorphic feature, water mark, tidal datum, elevation), including the errors associated with each; (3) investigates bias and potential errors associated with integrating different shoreline proxies from different sources; (4) develops standard, uniform methods of shoreline change analysis; (5) examines the effects of human activities on shoreline movement and rates of change; and (6) investigates alternative mathematical methods for calculating historical rates of change and uncertainties associated with them. This report summarizes historical shoreline changes on the three most densely populated islands of the eight main Hawaiian Islands: Kauai, Oahu, and Maui. The report emphasizes the hazard from “chronic” (decades to centuries) erosion at regional scales and strives to relate this hazard to the body of knowledge regarding coastal geology of Hawaii because of its potential impact on natural resources, the economy, and society. Results are organized by coastal regions (island side) and sub-regions (common littoral characteristics). This report of Hawaii coasts is part of a series of reports that include text summarizing methods, results, and implications of the results. In addition, geographic information system (GIS) data used in the analyses are made available for download (Romine and others, 2012). The rates of shoreline change and products presented in this report are not intended for site-specific analysis of shoreline movement, nor are they intended to replace any official source of shoreline change information identified by local or State government agencies, or other Federal entities that are used for regulatory purposes. Rates of shoreline change presented herein may differ from other published rates, and differences do not necessarily indicate that the other rates are inaccurate. Some discrepancies are to be expected, considering the many possible ways of determining shoreline positions and rates of change, and the inherent uncertainty in calculating these rates. Rates of shoreline change presented in this report represent shoreline movement under past conditions and are not intended for use in predicting future shoreline positions or future rates of shoreline change.

Hawai'i↗
USGS2015

Concentrations of hormones, pharmaceuticals and other micropollutants in groundwater affected by septic systems in New England and New York

Septic-system discharges can be an important source of micropollutants (including pharmaceuticals and endocrine active compounds) to adjacent groundwater and surface water systems. Groundwater samples were collected from well networks tapping glacial till in New England (NE) and sandy surficial aquifer New York (NY) during one sampling round in 2011. The NE network assesses the effect of a single large septic system that receives discharge from an extended health care facility for the elderly. The NY network assesses the effect of many small septic systems used seasonally on a densely populated portion of Fire Island. The data collected from these two networks indicate that hydrogeologic and demographic factors affect micropollutant concentrations in these systems. The highest micropollutant concentrations from the NE network were present in samples collected from below the leach beds and in a well downgradient of the leach beds. Total concentrations for personal care/domestic use compounds, pharmaceutical compounds and plasticizer compounds generally ranged from 1 to over 20 μg/L in the NE network samples. High tris(2-butoxyethyl phosphate) plasticizer concentrations in wells beneath and downgradient of the leach beds (> 20 μg/L) may reflect the presence of this compound in cleaning agents at the extended health-care facility. The highest micropollutant concentrations for the NY network were present in the shoreline wells and reflect groundwater that is most affected by septic system discharges. One of the shoreline wells had personal care/domestic use, pharmaceutical, and plasticizer concentrations ranging from 0.4 to 5.7 μg/L. Estradiol equivalency quotient concentrations were also highest in a shoreline well sample (3.1 ng/L). Most micropollutant concentrations increase with increasing specific conductance and total nitrogen concentrations for shoreline well samples. These findings suggest that septic systems serving institutional settings and densely populated areas in coastal settings may be locally important sources of micropollutants to adjacent aquifer and marine systems.

New York↗
USGS2021

Linking field and laboratory studies: Reproductive effects of perfluorinated substances on avian populations

Although both laboratory and field studies are needed to effectively assess effects and risk of contaminants to free-living organisms, the limitations of each must be understood. The objectives of this paper are to examine information on field studies of reproductive effects of perfluorinated substances (PFASs) on bird populations, discuss the differences among field studies, and then place those results in context with laboratory studies. Hypotheses to explain the divergences between field studies and between laboratory and field studies will be discussed. Those differences include mixture issues, misattribution of the mechanism or the specific PFAS causing impairments, as well as other possible reasons. Finally, suggestions to better link laboratory and field studies will be presented. Integr Environ Assess Manag 2021;17:690–696. Published 2021. This article is a US Government work and is in the public domain in the USA.

Integrated Environmental Assessment and Management↗
USGS2020

Effects of latitude, season, and temperature on Lake Sturgeon movement

Ecologists have a limited understanding of the rangewide variation in movement behavior in freshwater fishes, but recent expansion of biotelemetry allows biologists to investigate how fish movement can help to predict behavioral shifts in response to changing environments. The Lake Sturgeon Acipenser fulvescens is a wide-ranging, migratory, coolwater species, making it a candidate species for studying patterns in movement ecology. We conducted a literature review and meta-analysis of seasonal movement data compiled from 38 Lake Sturgeon telemetry studies in North America to build an understanding of spatiotemporal variation in movement behavior. Lake Sturgeon movement studies were underrepresented for low-latitude populations in the Mississippi, Missouri, and Ohio/Tennessee River basins. Highest movement usually occurred during spring spawning migrations, whereas other populations exhibited their highest movement in the fall, potentially in order to overwinter near spawning grounds. Our meta-regression analysis indicated that latitude or summer maximum temperature best predicted standardized mean difference between spring and summer movement in Lake Sturgeon populations across the species’ range. Our results suggest that Lake Sturgeon populations at lower latitudes and those that experience warmer summer temperatures have lower summer movement relative to spring movement. Managers may use this information to prioritize actions promoting the conservation of seasonally important habitats for the continued recovery of migratory coolwater fish (e.g., Lake Sturgeon) that potentially experience stressful thermal conditions.

North American Journal of Fisheries Management↗
USGS1979

Coal depositional models in some Tertiary and Cretaceous coal fields in the U.S. Western Interior

Detailed stratigraphic and sedimentological studies of the Tertiary Tongue River Member of the Fort Union Formation in the Powder River Basin, Wyoming, and the Cretaceous Blackhawk Formation and Star Point Sandstone in the Wasatch Plateau, Utah, indicate that the depositional environments of coal played a major role in controlling coal thickness, lateral continuity, potential minability, and type of floor and roof rocks. The potentially minable, thick coal beds of the Tongue River Member were primarily formed in long-lived floodbasin backswamps of upper alluvial plain environment. Avulsion of meandering fluvial channels contributed to the erratic lateral extent of coals in this environment. Laterally extensive coals formed in floodbasin backswamps of a lower alluvial plain environment; however, interruption by overbank and crevasse-splay sedimentation produced highly split and merging coal beds. Lacustrine sedimentation common to the lower alluvial plain, similar to the lake-covered lower alluvial valley of the Atchafalaya River Basin, is related to a high-constructive delta. In contrast to these alluvial coals are the deltaic coal deposits of the Blackhawk Formation. The formation consists of three coal populations: upper delta plain, lower delta plain, and ‘back-barrier’. Coals of the lower delta plain are thick and laterally extensive, in contrast to those of the upper delta plain and ‘back-barrier’, which contain abundant, very thin and laterally discontinuous carbonaceous shale partings. The reworking of the delta-front sediments of the Star Point Sandstone suggests that the Blackhawk-Star Point delta was a high-destructive system.

Utah, Wyoming↗
USGS2004

Developing index maps of water-harvest potential in Africa

The food security problem in Africa is tied to the small farmer, whose subsistence farming relies heavily on rain-fed agriculture. A dry spell lasting two to three weeks can cause a significant yield reduction. A small-scale irrigation scheme from small-capacity ponds can alleviate this problem. This solution would require a water harvest mechanism at a farm level. In this study, we looked at the feasibility of implementing such a water harvest mechanism in drought prone parts of Africa. A water balance study was conducted at different watershed levels. Runoff (watershed yield) was estimated using the SCS curve number technique and satellite derived rainfall estimates (RFE). Watersheds were delineated from the Africa-wide HYDRO-1K digital elevation model (DEM) data set in a GIS environment. Annual runoff volumes that can potentially be stored in a pond during storm events were estimated as the product of the watershed area and runoff excess estimated from the SCS Curve Number method. Estimates were made for seepage and net evaporation losses. A series of water harvest index maps were developed based on a combination of factors that took into account the availability of runoff, evaporation losses, population density, and the required watershed size needed to fill a small storage reservoir that can be used to alleviate water stress during a crop growing season. This study presents Africa-wide water-harvest index maps that could be used for conducting feasibility studies at a regional scale in assessing the relative differences in runoff potential between regions for the possibility of using ponds as a water management tool. ?? 2004 American Society of Agricultural Engineers.

Applied Engineering in Agriculture↗
USGS2014

Multilocus phylogeography and systematic revision of North American water shrews (genus: Sorex )

North American water shrews, which have traditionally included Sorex alaskanus , S. bendirii , and S. palustris , are widely distributed through Nearctic boreal forests and adapted for life in semiaquatic environments. Molecular mitochondrial signatures for these species have recorded an evolutionary history with variable levels of regional divergence, suggesting a strong role of Quaternary environmental change in speciation processes. We expanded molecular analyses, including more-comprehensive rangewide sampling of specimens representing North American water shrew taxa, except S. alaskanus , and sequencing of 4 independent loci from the nuclear and mitochondrial genomes. We investigated relative divergence of insular populations along the North Pacific Coast, and newly recognized diversity from southwestern montane locations, potentially representing refugial isolates. Congruent independent genealogies, lack of definitive evidence for contemporary gene flow, and high support from coalescent species trees indicated differentiation of 4 major geographic lineages over multiple glacial cycles of the late Quaternary, similar to a growing number of boreal taxa. Limited divergence of insular populations suggested colonization following the last glacial. Characterization of southwestern montane diversity will require further sampling but divergence over multiple loci is indicative of a relictual sky-island fauna. We have reviewed and revised North American water shrew taxonomy including the recognition of 3 species within what was previously known as S. palustris . The possibility of gene flow between most distantly related North American water shrew lineages coupled with unresolved early diversification of this group and other sibling species reflects a complex but potentially productive system for investigating speciation processes.

Journal of Mammalogy↗
USGS2007

Effects of wastewater disinfection on waterborne bacteria and viruses

Wastewater disinfection is practiced with the goal of reducing risks of human exposure to pathogenic microorganisms. In most circumstances, the efficacy of a wastewater disinfection process is regulated and monitored based on measurements of the responses of indicator bacteria. However, inactivation of indicator bacteria does not guarantee an acceptable degree of inactivation among other waterborne microorganisms (e.g., microbial pathogens). Undisinfected effluent samples from several municipal wastewater treatment facilities were collected for analysis. Facilities were selected to provide a broad spectrum of effluent quality, particularly as related to nitrogenous compounds. Samples were subjected to bench-scale chlorination and dechlorination and UV irradiation under conditions that allowed compliance with relevant discharge regulations and such that disinfectant exposures could be accurately quantified. Disinfected samples were subjected to a battery of assays to assess the immediate and long-term effects of wastewater disinfection on waterborne bacteria and viruses. In general, (viable) bacterial populations showed an immediate decline as a result of disinfectant exposure; however, incubation of disinfected samples under conditions that were designed to mimic the conditions in a receiving stream resulted in substantial recovery of the total bacterial community. The bacterial groups that are commonly used as indicators do not provide an accurate representation of the response of the bacterial community to disinfectant exposure and subsequent recovery in the environment. UV irradiation and chlorination/dechlorination both accomplished measurable inactivation of indigenous phage; however, the extent of inactivation was fairly modest under the conditions of disinfection used in this study. UV irradiation was consistently more effective as a virucide than chlorination/dechlorination under the conditions of application, based on measurements of virus (phage) diversity and concentration. Taken together, and when considered in conjunction with previously published research, the results of these experiments illustrate several important limitations of common disinfection processes as applied in the treatment of municipal wastewaters. In general, it is not clear that conventional disinfection processes, as commonly implemented, are effective for control of the risks of disease transmission, particularly those associated with viral pathogens. Microbial quality in receiving streams may not be substantially improved by the application of these disinfection processes; under some circumstances, an argument can be made that disinfection may actually yield a decrease in effluent and receiving water quality. Decisions regarding the need for effluent disinfection must account for site-specific characteristics, but it is not clear that disinfection of municipal wastewater effluents is necessary or beneficial for all facilities. When direct human contact or ingestion of municipal wastewater effluents is likely, disinfection may be necessary. Under these circumstances, UV irradiation appears to be superior to chlorination in terms of microbial quality and chemistry and toxicology. This advantage is particularly evident in effluents that contain appreciable quantities of ammonia-nitrogen or organic nitrogen.

Water Environment Research↗
USGS2021

Individual variation in temporal dynamics of post-release habitat selection

Translocated animals undergo a phase of behavioral adjustment after being released in a novel environment, initially prioritizing exploration and gradually shifting toward resource exploitation. This transition has been termed post-release behavioral modification. Post-release behavioral modification may also manifest as changes in habitat selection through time, and these temporal dynamics may differ between individuals. We aimed to evaluate how post-release behavioral modification is reflected in temporal dynamics of habitat selection and its variability across individuals using a population of translocated female greater sage-grouse as a case study. Sage-grouse were translocated from Wyoming to North Dakota (USA) during the summers of 2018–2020. We analyzed individual habitat selection as a function of sagebrush cover, herbaceous cover, slope, and distance to roads. Herbaceous cover is a key foraging resource for sage-grouse during summer; thus, we expected a shift from exploration to exploitation to manifest as temporally-varying selection for herbaceous cover. For each individual sage-grouse ( N = 26), we tested two competing models: a null model with no time-dependence and a model with time-dependent selection for herbaceous cover. We performed model selection at the individual level using an information-theoretic approach. Time-dependence was supported for five individuals, unsupported for seven, and the two models were indistinguishable based on AIC c for the remaining fourteen. We found no association between the top-ranked model and individual reproductive status (brood-rearing or not). We showed that temporal dynamics of post-release habitat selection may emerge in some individuals but not in others, and that failing to account for time-dependence may hinder the detection of steady-state habitat selection patterns. These findings demonstrate the need to consider both temporal dynamics and individual variability in habitat selection when conducting post-release monitoring to inform translocation protocols.

Frontiers in Conservation Science↗
USGS2019

Estimating domestic well locations and populations served in the contiguous U.S. for years 2000 and 2010

Domestic wells provide drinking water supply for approximately 40 million people in the United States. Knowing the location of these wells, and the populations they serve, is important for identifying heavily used aquifers, locations susceptible to contamination, and populations potentially impacted by poor-quality groundwater. The 1990 census was the last nationally consistent survey of a home’s source of water, and has not been surveyed since. This paper presents a method for projecting the population dependent on domestic wells for years after 1990, using information from the 1990 census along with population data from subsequent censuses. The method is based on the “domestic ratio” at the census block-group level, defined here as the number of households dependent on domestic wells divided by the total population. Analysis of 1990 data (>220,000 block-groups) indicates that the domestic ratio is a function of the household density. As household density increases, the domestic ratio decreases, once a household density threshold is met. The 1990 data were used to develop a relationship between household density and the domestic ratio. The fitted model, along with household density data from 2000 and 2010, was used to estimate domestic ratios for each decadal year. In turn, the number of households dependent on domestic wells was estimated at the block-group level for 2000 and 2010. High-resolution census-block population data were used to refine the spatial distribution of domestic-well usage and to convert the data into population numbers. The results are presented in two downloadable raster datasets for each decadal year. It is estimated that the total population using domestic-well water in the contiguous U.S. increased 1.5% from 1990 to 2000 to a total of 37.25 million people and increased slightly from 2000 to 2010 to 37.29 million people.

Science of the Total Environment↗
USGS2024

A survey of the severity of mental health symptoms in the planetary science community

There is a growing recognition of a mental health crisis within the academic and research communities. Members of the planetary science community have called for healthier work environments to improve mental well-being. As a preliminary step towards improving workplace culture, we sought to determine whether the broader mental health crisis extends to planetary science and to assess the severity of anxiety, depressive and stress symptoms. Our 2022 mental health survey of the planetary science community suggests that the severity of anxiety and depressive symptoms in the community is greater than in the general US population. Furthermore, anxiety and depressive symptoms are more severe for graduate students and postdoctoral researchers than any other career stage. Comparing groups within planetary science, we found that anxiety, depressive and/or stress symptoms appear greater among marginalized groups, such as women, people of colour and members of the LGBTQ+ community. A mental health problem is impacting the planetary science community. Improving well-being will promote enhanced research quality and productivity.

Nature Astronomy↗
USGS1972

Factors of ecologic succession in oligotrophic fish communities of the Laurentian Great Lakes

Oligotrophic fish communities of the Great Lakes have undergone successive disruptions since the mid-1800s. Major contributing factors have been intensive selective fisheries, extreme modification of the drainage, invasion of marine species, and progressive physical–chemical changes of the lake environments. Lake Ontario was the first to be affected as its basin was settled and industrialized earliest, and it was the first to be connected by canals to the mid-Atlantic where the alewife ( Alosa pseudoharengus ) and sea lamprey ( Petromyzon marinus ) which ultimately became established in the Great Lakes were abundant. Oligotrophic fish communities were successively disrupted in Lakes Erie, Huron, Michigan, and Superior as the affects of population growth, industrialization, and marine invaders spread upward in the Laurentian drainage.The degree and sequence of response of families offish and species within families differed for each factor, but the sequence of change among families and species has been the same in response to each factor as it affected various lakes at different times. The ultimate result of the disruption of fish communities has been a reduction of productivity of oligotrophic species that ranges from extreme in Lake Ontario to moderate in Lake Superior, and which has reached a state of instability and rapid change in the upper three Great Lakes by the rnid-1900s similar to the situation in Lake Ontario in the mid-1800s. Since oligotrophic species (primarily salmonines, coregonines, and deepwater cottids) are the only kinds of fish that fully occupied the entire volume of the deepwater Great Lakes (Ontario, Huron, Michigan, and Superior), the fish biomass of these lakes has been reduced as various species declined or disappeared. In Lake Erie, which is shallow, and in the shallow bays of the deep lakes, oligotrophic species were replaced by mesotrophic species, primarily percids, which have successively increased and declined. All oligotrophic species are greatly reduced or extinct in lakes Ontario and Erie, and are in various stages of decline in lakes Huron, Michigan, and Superior, from greatest to least, respectively. The percids appear to be near the end of their sequence of succession in lakes Erie, Ontario, and Huron (primarily Saginaw Bay) where only the yellow perch ( Perca flavescens ) remains abundant. The yellow perch appears to be on the brink of decline in Lake Erie, which has been more severely influenced by water quality change than the other lakes.

Journal of the Fisheries Research Board of Canada↗
USGS2016

Seeing the forest through the trees: Considering roost-site selection at multiple spatial scales

Conservation of bat species is one of the most daunting wildlife conservation challenges in North America, requiring detailed knowledge about their ecology to guide conservation efforts. Outside of the hibernating season, bats in temperate forest environments spend their diurnal time in day-roosts. In addition to simple shelter, summer roost availability is as critical as maternity sites and maintaining social group contact. To date, a major focus of bat conservation has concentrated on conserving individual roost sites, with comparatively less focus on the role that broader habitat conditions contribute towards roost-site selection. We evaluated roost-site selection by a northern population of federally-endangered Indiana bats ( Myotis sodalis ) at Fort Drum Military Installation in New York, USA at three different spatial scales: landscape, forest stand, and individual tree level. During 2007–2011, we radiotracked 33 Indiana bats (10 males, 23 females) and located 348 roosting events in 116 unique roost trees. At the landscape scale, bat roost-site selection was positively associated with northern mixed forest, increased slope, and greater distance from human development. At the stand scale, we observed subtle differences in roost site selection based on sex and season, but roost selection was generally positively associated with larger stands with a higher basal area, larger tree diameter, and a greater sugar maple ( Acer saccharum ) component. We observed no distinct trends of roosts being near high-quality foraging areas of water and forest edges. At the tree scale, roosts were typically in American elm ( Ulmus americana ) or sugar maple of large diameter (>30 cm) of moderate decay with loose bark. Collectively, our results highlight the importance of considering day roost needs simultaneously across multiple spatial scales. Size and decay class of individual roosts are key ecological attributes for the Indiana bat, however, larger-scale stand structural components that are products of past and current land use interacting with environmental aspects such as landform also are important factors influencing roost-tree selection patterns.

PLoS ONE↗
USGS2024

Deep learning workflow to support in-flight processing of digital aerial imagery for wildlife population surveys

Deep learning shows promise for automating detection and classification of wildlife from digital aerial imagery to support cost-efficient remote sensing solutions for wildlife population monitoring. To support in-flight orthorectification and machine learning processing to detect and classify wildlife from imagery in near real-time, we evaluated deep learning methods that address hardware limitations and the need for processing efficiencies to support the envisioned in-flight workflow. We developed an annotated dataset for a suite of marine birds from high-resolution digital aerial imagery collected over open water environments to train the models. The proposed 3-stage workflow for automated, in-flight data processing includes: 1) image filtering based on the probability of any bird occurrence, 2) bird instance detection, and 3) bird instance classification. For image filtering, we compared the performance of a binary classifier with Mask Region-based Convolutional Neural Network (Mask R-CNN) as a means of sub-setting large volumes of imagery based on the probability of at least one bird occurrence in an image. On both the validation and test datasets, the binary classifier achieved higher performance than Mask R-CNN for predicting bird occurrence at the image-level. We recommend the binary classifier over Mask R-CNN for workflow first-stage filtering. For bird instance detection, we leveraged Mask R-CNN as our detection framework and proposed an iterative refinement method to bootstrap our predicted detections from loose ground-truth annotations. We also discuss future work to address the taxonomic classification phase of the envisioned workflow.

Massachusetts, Wisconsin↗