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U.S. Geological Survey (USGS) Western Region Kasatochi Volcano Coastal and Ocean Science

Alaska is noteworthy as a region of frequent seismic and volcanic activity. The region contains 52 historically active volcanoes, 14 of which have had at least one major eruptive event since 1990. Despite the high frequency of volcanic activity in Alaska, comprehensive studies of how ecosystems respond to volcanic eruptions are non-existent. On August 7, 2008, Kasatochi Volcano, in the central Aleutian Islands, erupted catastrophically, covering the island with ash and hot pyroclastic flow material. Kasatochi Island was an annual monitoring site of the U.S. Fish and Wildlife Service, Alaska Maritime National Wildlife Refuge (AMNWR); therefore, features of the terrestrial and nearshore ecosystems of the island were well known. In 2009, the U.S. Geological Survey (USGS), AMNWR, and University of Alaska Fairbanks began long-term studies to better understand the effects of the eruption and the role of volcanism in structuring ecosystems in the Aleutian Islands, a volcano-dominated region with high natural resource values.

Fact Sheet↗

Organochlorine compounds and current-use pesticides in snow and lake sediment in Rocky Mountain National Park, Colorado, and Glacier National Park, Montana, 2002-03

Organochlorine compounds and current-use pesticides were measured in snow and lake-sediment samples from Rocky Mountain National Park in Colorado and Glacier National Park in Montana to determine their occurrence and distribution in high-elevation aquatic ecosystems. The U.S. Geological Survey, in cooperation with the National Park Service, collected snow samples at eight sites in Rocky Mountain National Park and at eight sites in Glacier National Park during spring of 2002 and 2003 just prior to the start of snowmelt. Surface sediments were collected from 11 lakes in Rocky Mountain National Park and 10 lakes in Glacier National Park during summer months of 2002 and 2003. Samples were analyzed for organochlorine compounds by gas chromatography with electron-capture detection and current-use pesticides by gas chromatography with electron-impact mass spectrometry. A subset of samples was reanalyzed using a third instrumental technique (gas chromatography with electron-capture negative ion mass spectrometry) to verify detected concentrations in the initial analysis and to investigate the presence of additional compounds. For the snow samples, the pesticides most frequently detected were endosulfan, dacthal, and chlorothalonil, all of which are chlorinated pesticides that currently are registered for use in North America. Concentrations of these pesticides in snow were very low, ranging from 0.07 to 2.36 nanograms per liter. Of the historical-use pesticides, hexachlorobenzene, dieldrin, and trans -nonachlor were detected in snow but only in one sample each. Annual deposition rates of dacthal, endosulfan, and chlorothalonil were estimated at 0.7 to 3.0 micrograms per square meter. These estimates are likely biased low because they do not account for pesticide deposition during summer months. For the lake-sediment samples, DDE ( p,p’ -dichlorodiphenyldichoroethene) and DDD ( p,p’ -dichlorodiphenyldichoroethane) were the most frequently detected organochlorine compounds. DDE and DDD are degradation products of DDT ( p,p’ -dichlorodiphenyltrichloroethane), which is a well-documented, persistent organochlorine insecticide that has been banned from use in the United States since 1972. Detected concentrations were very low, ranging from 0.12 to 4.7 micrograms per kilogram, and probably pose little threat to aquatic organisms in park lakes. DDD and DDE concentrations in a sediment core from Mills Lake in Rocky Mountain National Park indicate that atmospheric deposition of DDT and possibly other banned organochlorine compounds to high-elevation parks has been in decline since the 1970s. Commonly detected current-use pesticides in lake sediments included dacthal and endosulfan sulfate, which ranged in concentrations from 0.11 to 0.26 micrograms per kilogram for dacthal and 0.12 to 1.2 micrograms per kilogram for endosulfan sulfate. Both compounds were found in nearly all the snow samples, confirming that some current-use pesticides entering high-elevation aquatic ecosystems through atmospheric deposition are accumulating in lake sediments and potentially in aquatic biota.

Colorado, Montana↗

Assessment of rangeland ecosystem conditions in Grand Canyon-Parashant National Monument, Arizona

Sustainability of dryland ecosystems depends on the functionality of soil-vegetation feedbacks that affect ecosystem processes, such as nutrient cycling, water capture and retention, soil erosion and deposition, and plant establishment and reproduction. Useful, common indicators can provide information on soil and site stability, hydrologic function, and biotic integrity. Evaluation of rangeland health thus relies on describing the condition and sustainability of these individual, measurable, and observable indicators that are linked to important ecosystem processes. This report focuses on the ~200,000 acres of the Grand Canyon-Parashant National Monument that is administered by the National Park Service (NPS)—one of the largest NPS units where livestock grazing is a permitted land-use activity. Many ecosystems in the monument are characterized by a low degree of resilience to improper grazing because of low and variable precipitation. The monument is marked by a high degree of environmental heterogeneity, including a large elevation gradient, widely differing precipitation patterns, a diversity of geologic substrates, and unique combinations of plant species. The objective of this report is to (1) increase our understanding of the underlying landscape, soil, and climate setting factors that affect Grand Canyon-Parashant National Monument dryland ecosystem structure and function (also referred to as land potential) and (2) characterize the condition of monument ecosystems in relation to management concepts, such as rangeland health. Data were analyzed by elevation zone using both univariate and multivariate approaches. Survey results document the high level of diversity within the study area, including 15 unique soil taxa and 271 species of plants. We collected three new plant species for Grand Canyon-Parashant National Monument and 17 new species for the NPS portion of the monument. Results also document a strong association between rangeland health indicators and elevation, topographic setting, and soils. Soil factors found to explain important variation across plots include the amount of exposed bedrock, soil rockiness, soil texture (and associated hydrologic properties), and soil depth. We also found that dominant species turnover across elevation may represent species’ differences in adaptation to climates, including Larrea tridentata , Coleogyne ramosissima , and Artemisia spp. Bromus rubens is the most common invasive species of concern recorded in this study, but other common invasive species are Bromus tectorum , Erodium cicutarium , and Schismus arabicus . Correlations between an index of cattle use and indicators of rangeland health suggest that areas with high cattle use have increased bare ground, decreased ground cover, increased frequency of Schismus arabicus , decreased cover of Coleogyne ramosissima and Ephedra spp., and increased cover of Gutierrezia spp. The few strong correlations observed between indicators of vascular plant community cover or abundance and indicators of cattle activity support rangeland assessment and monitoring strategies that do not rely solely on plant-based indicators are needed. This work supports management of dryland ecosystems, including Grand Canyon-Parashant National Monument, using concepts of land potential. We conclude the report with recommendations on improving existing land-potential-based classification systems, associated interpretations, and methods for moving forward with a Grand Canyon-Parashant National Monument rangeland monitoring program.

Arizona↗

Effects of dams and geomorphic context on riparian forests of the Elwha River, Washington

Understanding how dams affect the shifting habitat mosaic of river bottomlands is key for protecting the many ecological functions and related goods and services that riparian forests provide and for informing approaches to riparian ecosystem restoration. We examined the downstream effects of two large dams on patterns of forest composition, structure, and dynamics within different geomorphic contexts and compared them to upstream reference conditions along the Elwha River, Washington, USA. Patterns of riparian vegetation in river segments downstream of the dams were driven largely by channel and bottomland geomorphic responses to a dramatically reduced sediment supply. The river segment upstream of both dams was the most geomorphically dynamic, whereas the segment between the dams was the least dynamic due to substantial channel armoring, and the segment downstream of both dams was intermediate due to some local sediment supply. These geomorphic differences were linked to altered characteristics of the shifting habitat mosaic, including older forest age structure and fewer young Populus balsamifera subsp. trichocarpa stands in the relatively static segment between the dams compared to more extensive early-successional forests (dominated by Alnus rubra and Salix spp.) and pioneer seedling recruitment upstream of the dams. Species composition of later-successional forest communities varied among river segments as well, with greater Pseudotsuga menziesii and Tsuga heterophylla abundance upstream of both dams, Acer spp. abundance between the dams, and P. balsamifera subsp. trichocarpa and Thuja plicata abundance below both dams. Riparian forest responses to the recent removal of the two dams on the Elwha River will depend largely on channel and geomorphic adjustments to the release, transport, and deposition of the large volume of sediment formerly stored in the reservoirs, together with changes in large wood dynamics.

Washington↗

Anthropogenic influences on the input and biogeochemical cycling of nutrients and mercury in Great Salt Lake, Utah, USA

Despite the ecological and economic importance of Great Salt Lake (GSL), little is known about the input and biogeochemical cycling of nutrients and trace elements in the lake. In response to increasing public concern regarding anthropogenic inputs to the GSL ecosystem, the US Geological Survey (USGS) and US Fish and Wildlife Service (USFWS) initiated coordinated studies to quantify and evaluate the significance of nutrient and Hg inputs into GSL. A 6??? decrease in ??15N observed in brine shrimp (Artemia franciscana) samples collected from GSL during summer time periods is likely due to the consumption of cyanobacteria produced in freshwater bays entering the lake. Supporting data collected from the outflow of Farmington Bay indicates decreasing trends in ??15N in particulate organic matter (POM) during the mid-summer time period, reflective of increasing proportions of cyanobacteria in algae exported to GSL on a seasonal basis. The C:N molar ratio of POM in outflow from Farmington Bay decreases during the summer period, supportive of the increased activity of N fixation indicated by decreasing ??15N in brine shrimp and POM. Although N fixation is only taking place in the relatively freshwater inflows to GSL, data indicate that influx of fresh water influences large areas of the lake. Separation of GSL into two distinct hydrologic and geochemical systems from the construction of a railroad causeway in the late 1950s has created a persistent and widespread anoxic layer in the southern part of GSL. This anoxic layer, referred to as the deep brine layer (DBL), has high rates of SO42 - reduction, likely increasing the Hg methylation capacity. High concentrations of methyl mercury (CH3Hg) (median concentration = 24 ng/L) were observed in the DBL with a significant proportion (31-60%) of total Hg in the CH3Hg form. Hydroacoustic and sediment-trap evidence indicate that turbulence introduced by internal waves generated during sustained wind events can temporarily mix the elevated CH3Hg concentrations in the DBL with the more biologically active upper brine layer (UBL). Brine shrimp collected during the summer/fall time periods contained elevated Hg concentrations (median concentration = 0.34 mg/kg, dry weight (dw)) relative to samples collected during the spring (median concentration < 0.2 mg/kg, dw). Higher Hg in brine shrimp during the summer and fall may reflect the higher proportion of adult brine shrimp during this time period, resulting in an increased time for bioaccumulation of Hg. Eared grebes (Podiceps nigricollis) consume brine shrimp from GSL during the fall molting period. Median Hg concentrations in eared grebe livers increased by almost three times during the 3-5 month fall molting period. Selected duck species utilizing GSL have consistently exceeded the US Environmental Protection Agency (USEPA) screening level for Hg (0.3 mg/kg Hg wet weight), resulting in the issuance of warnings against unlimited human consumption of breast muscle tissue.

Applied Geochemistry↗

Biodiversity loss and its impact on humanity

The most unique feature of Earth is the existence of life, and the most extraordinary feature of life is its diversity. Approximately 9 million types of plants, animals, protists and fungi inhabit the Earth. So, too, do 7 billion people. Two decades ago, at the first Earth Summit, the vast majority of the world's nations declared that human actions were dismantling the Earth's ecosystems, eliminating genes, species and biological traits at an alarming rate. This observation led to the question of how such loss of biological diversity will alter the functioning of ecosystems and their ability to provide society with the goods and services needed to prosper.

Nature↗

The Caloosahatchee River Estuary: A monitoring partnership between Federal, State, and local governments, 2007-13

The tidal Caloosahatchee River and downstream estuaries have substantial environmental, recreational, and economic value for southwest Florida residents and visitors. Modifications to the Caloosahatchee River watershed have altered the predevelopment hydrology, thereby threatening the environmental health of estuaries in the area. Hydrologic monitoring of the freshwater contributions from tributaries to the tidal Caloosahatchee River and its estuaries is necessary to adequately describe the total freshwater inflow and constituent loads to the delicate estuarine system. From 2007 to 2013, the U.S. Geological Survey (USGS), in cooperation with the Florida Department of Environmental Protection (FDEP) and the South Florida Water Management District (SFWMD), operated a flow and salinity monitoring network at tributaries flowing into and at key locations within the tidal Caloosahatchee River. This network was designed to supplement existing long-term monitoring stations, such as W.P. Franklin Lock, also known as S–79, which are operated by the USGS in cooperation with the U.S. Army Corps of Engineers, Lee County, and the City of Cape Coral. Additionally, a monitoring station was operated on Sanibel Island from 2010 to 2013 as part of the USGS Greater Everglades Priority Ecosystem Science initiative and in partnership with U.S. Fish and Wildlife Service (J.N. Ding Darling National Wildlife Refuge). Moving boat water-quality surveys throughout the tidal Caloosahatchee River and downstream estuaries began in 2011 and are ongoing. Information generated by these monitoring networks has proved valuable to the FDEP for developing total maximum daily load criteria, and to the SFWMD for calibrating and verifying a hydrodynamic model. The information also supports the Caloosahatchee River Watershed Protection Plan.

Florida↗

Predicting spread of invasive exotic plants into dewatered reservoirs after dam removal on the Elwha River, Olympic National Park, Washington

The National Park Service is planning to start the restoration of the Elwha River ecosystem in Olympic National Park by removing two high head dams beginning in 2011. The potential for dispersal of exotic plants into dewatered reservoirs following dam removal, which would inhibit restoration of native vegetation, is of great concern. We focused on predicting long-distance dispersal of invasive exotic plants rather than diffusive spread because local sources of invasive species have been surveyed. We included the long-distance dispersal vectors: wind, water, birds, beavers, ungulates, and users of roads and trails. Using information about the current distribution of invasive species from two surveys, various geographic information system techniques and models, and statistical methods, we identified high-priority areas for Park staff to treat prior to dam removal, and areas of the dewatered reservoirs at risk after dam removal.

Washington↗

A hydrogeomorphic classification of connectivity of large rivers of the Upper Midwest, United States

River connectivity is defined as the water-mediated exchange of matter, energy, and biota between different elements of the riverine landscape. Connectivity is an especially important concept in large-river corridors (channel plus floodplain ) because large rivers integrate fluxes of water, sediment, nutrients, contaminants, and other transported constituents emanating from large contributing drainage basins, and thereby contribute to the complexity of large-river ecosystems. Large rivers are also highly valued for socioeconomic goods and services, which has led to historical fragmentation, lack of connectivity, and contentiousness about best policies for managing large-river corridors. The classification is intended to serve as a template for understanding geographic variation in large rivers within the Midwest, to aid in designing scientific studies of large river ecological processes, and to match specific river-management and restoration objectives to specific river reaches. The focus of the classification is on measuring river connectivity from available hydrological and geomorphic data. We provide a multiscale assessment and classification for segments of 15 rivers that meet various criteria for largeness. All rivers are tributaries to the Mississippi River system. The 11,600 kilometers (km) that qualified as large were classified by major alterations (unimpounded, navigation pools, storage reservoir) and additionally assessed for their network continuity as a function of numbers and heights of dams. Among the 15 rivers, 55 percent of segment length was unimpounded, 30 percent was in navigation pools, and 15 percent was under storage reservoirs. Assessment of network longitudinal connectivity among river segments documented the contrast between river segments with low-head navigation dams (Upper Mississippi, Illinois, Ohio, Green, and Cumberland Rivers) and those segments with high-head dams (mostly in the Upper Missouri River). The longest unimpounded river pathways exist in the Lower Missouri River and connected tributaries where nearly 1,300 km of the Missouri River connect to an additional 1,800 km of the Middle and Lower Mississippi Rivers. At our finest scale, we present a statistically based, component classification based on 10-km segments. Cluster analysis of hydrologic variables from 66 streamflow-gaging stations yielded 5 clusters calculated from 5 ecohydrological metrics related to lateral connectivity with the floodplain. A separate cluster analysis of 5 geomorphologic variables associated with each of the 1,172 river segments also yielded 5 clusters. When the hydrologic variables were associated with corresponding segments, the cluster analysis yielded 8 hydrogeomorphic clusters that could be explained in terms of their contribution to floodplain connectivity. Although the clusters overlap considerably in principal component space, the resulting hydrogeomorphic classification leads to a physically reasonable distribution of classes. The resulting classification is intended to increase geographic awareness of the range of variation of connectivity potential among large rivers of the Upper Midwest, to increase understanding of the extent of alteration of these rivers, and potentially to serve as a template for stratifying study designs of large-river corridor ecological processes.

Colorado, Illinois, Indiana, Iowa, Kansas, Kentuck↗

Evaluation of strategies for balancing water use and streamflow reductions in the upper Charles River basin, eastern Massachusetts

The upper Charles River basin, located 30 miles southwest of Boston, Massachusetts, is experiencing water shortages during the summer. Towns in the basin have instituted water-conservation programs and water-use bans to reduce summertime water use. During July through October, streamflow in the Charles River and its tributaries regularly falls below 0.50 cubic foot per second per square mile, the minimum streamflow used by the U.S. Fish and Wildlife Service as its Aquatic Base Flow standard for maintaining healthy freshwater ecosystems. To examine how human water use could be changed to mitigate these water shortages, a numerical ground-water flow model was modified and used in conjunction with response coefficients and optimization techniques. Streamflows at 10 locations on the Charles River and its tributaries were determined under various water-use scenarios and climatic conditions. A variety of engineered solutions to the water shortages were examined for their ability to increase water supplies and summertime streamflows. Results indicate that although human water use contributes to the problem of low summertime streamflows, human water use is not the only, or even the primary, cause of low flows in the basin. The lowest summertime streamflows increase by 12 percent but remain below the Aquatic Base Flow standard when all public water-supply pumpage and wastewater flows in the basin are eliminated in a simulation under average climatic conditions. Under dry climatic conditions, the same measures increase the lowest average monthly streamflow by 95 percent but do not increase it above the Aquatic Base Flow standard. The most promising water-management strategies to increase streamflows and water supplies, based on the study results, include wastewater recharge to the aquifer, altered management of pumping well schedules, regional water-supply sharing, and water conservation. In a scenario that simulated towns sharing water supplies, streamflow in the Charles River as it exits the basin increased by 18 percent during July through September and an excess water-supply capacity of 13.4 cubic feet per second, above and beyond average use, would be available to all towns in the basin. These study results could help water suppliers and regulators evaluate strategies for balancing ground-water development and streamflow reductions in the basin.

Massachusetts↗

Getting the message across: using ecological integrity to communicate with resource managers

This chapter describes and illustrates how concepts of ecological integrity, thresholds, and reference conditions can be integrated into a research and monitoring framework for natural resource management. Ecological integrity has been defined as a measure of the composition, structure, and function of an ecosystem in relation to the system’s natural or historical range of variation, as well as perturbations caused by natural or anthropogenic agents of change. Using ecological integrity to communicate with managers requires five steps, often implemented iteratively: (1) document the scale of the project and the current conceptual understanding and reference conditions of the ecosystem, (2) select appropriate metrics representing integrity, (3) define externally verified assessment points (metric values that signify an ecological change or need for management action) for the metrics, (4) collect data and calculate metric scores, and (5) summarize the status of the ecosystem using a variety of reporting methods. While we present the steps linearly for conceptual clarity, actual implementation of this approach may require addressing the steps in a different order or revisiting steps (such as metric selection) multiple times as data are collected. Knowledge of relevant ecological thresholds is important when metrics are selected, because thresholds identify where small changes in an environmental driver produce large responses in the ecosystem. Metrics with thresholds at or just beyond the limits of a system’s range of natural variability can be excellent, since moving beyond the normal range produces a marked change in their values. Alternatively, metrics with thresholds within but near the edge of the range of natural variability can serve as harbingers of potential change. Identifying thresholds also contributes to decisions about selection of assessment points. In particular, if there is a significant resistance to perturbation in an ecosystem, with threshold behavior not occurring until well beyond the historical range of variation, this may provide a scientific basis for shifting an ecological assessment point beyond the historical range. We present two case studies using ongoing monitoring by the US National Park Service Vital Signs program that illustrate the use of an ecological integrity approach to communicate ecosystem status to resource managers. The Wetland Ecological Integrity in Rocky Mountain National Park case study uses an analytical approach that specifically incorporates threshold detection into the process of establishing assessment points. The Forest Ecological Integrity of Northeastern National Parks case study describes a method for reporting ecological integrity to resource managers and other decision makers. We believe our approach has the potential for wide applicability for natural resource management.

Book chapter↗

Water quality monitoring protocol for wadeable streams and rivers in the Northern Great Plains Network

Preserving the national parks unimpaired for the enjoyment of future generations is a fundamental purpose of the National Park Service (NPS). To address growing concerns regarding the overall physical, chemical, and biological elements and processes of park ecosystems, the NPS implemented science-based management through “Vital Signs” monitoring in 270 national parks (NPS 2007). The Northern Great Plains Network (NGPN) is among the 32 National Park Service Networks participating in this monitoring effort. The NGPN will develop protocols over the next several years to determine the overall health or condition of resources within 13 parks located in Nebraska, North Dakota, South Dakota, and Wyoming. The NGPN identified water resources as a Vital Sign to monitor because water quality and quantity are important aspects of ecological processes that operate across multiple temporal and spatial scales. In the semi-arid region of the Northern Great Plains, surface-water resources within the NGPN are ecologically important. The 13 parks within the NGPN are diverse and vary greatly in size, visitation, and water resources. For example, the measured surface area of the Badlands National Park is about 243,000 acres, which represents nearly one-half of the combined acreage of all 13 NGPN park units; however, water resources within the park are scarce and the majority of streams are intermittent. The Badlands National Park annually hosts nearly 860,000 visitors. Mount Rushmore National Memorial also has limited water resources but hosts nearly 3 million visitors per year within its 1,278 acres. The Missouri National Recreational River contains the greatest portion of waterbodies within the NGPN, consisting of 139 rivers and streams within an areal extent of about 69,000 acres. Although water resources and acreage of the NGPN parks are varied, unifying factors among the parks include the relatively low population density within the Great Plains area and the strong emphasis on agrarian land use throughout the region. To address the diverse water quality concerns, NGPN received input from park staff and conducted pilot studies in 2009 and 2010. These factors, in combination with the NGPN budget allocations, resulted in development of the NGPN’s water quality monitoring protocol. This protocol will provide a context to aid park resource managers in their day-to-day decisions and allow the assessment of the status (current conditions) and trends (directional changes across time) of streams/rivers within selected NGPN parks. Data collected from integrating water resource monitoring, in combination with the inventory of additional Vital Signs, can be used to assess resources and to aid in sound managerial decisions by the NGPN parks. As recommended by Oakley et al. (2003), this protocol provides a narrative and the rationale for selection of streams and rivers within the NGPN that will be measured for water quality, including dissolved oxygen, pH, specific conductivity, and temperature. Standard operating procedures (SOPs) that detail the steps to collect, manage, and disseminate the NGPN water quality data are in an accompanying document. The sampling design documented in this protocol may be updated as monitoring information is collected and interpreted, and as refinement of methodologies develop through time. In addition, evaluation of data and refinement of the program may necessitate potential changes of program objectives. Changes to the NGPN water quality protocols and SOPs will be carefully documented in a revision history log.

Colorado, Montana, Nebraska, North Dakota, South D↗

Freshwater unionid mussels threatened by predation of Round Goby (Neogobius melanostomus)

Indigenous freshwater mussels (Unionidae) are integral to riverine ecosystems, playing a pivotal role in aquatic food webs and providing ecological services. With populations on the decline worldwide, freshwater mussels are of conservation concern. In this study, we explore the propensity of the invasive Round Goby (Neogobius melanostomus) fish to prey upon indigenous freshwater mussels. First, we conducted lab experiments where Round Gobies were given the opportunity to feed on juvenile unionid mussels and macroinvertebrates, revealing rates and preferences of consumption. Several Round Gobies consumed whole freshwater mussels during these experiments, as confirmed by mussel counts and x-ray images of the fishes. Next, we investigated Round Gobies collected from stream habitats of the French Creek watershed, which is renowned for its unique and rich aquatic biodiversity. We developed a novel DNA metabarcoding method to identify the specific species of mussels consumed by Round Goby and provide a new database of DNA gene sequences for 25 indigenous unionid mussel species. Several of the fishes sampled had consumed indigenous mussels, including the Elktoe (non-endangered), Creeper (non-endangered), Long Solid (state endangered), and Rayed Bean (federally endangered) species. The invasive Round Goby poses a growing threat to unionid mussels, including species of conservation concern. The introduction of the invasive Round Goby to freshwaters of North America is shaping ecosystem transitions within the aquatic critical zone having widespread implications for conservation and management.

Maryland, New York, Pennsylvania, West Virginia↗

Monitoring land use on military installations

The US Geological Survey's Land Cover Trends is a research projects aimed to understand the rates, trends, causes, and consequences of contemporary US land use and land-cover change. The project is using the EPA Level III eco-regions as a geographic framework to process geospatial data collected between 1973 and 2000 to characterize ecosystem responses to land-use changes. The results are expected to be used for collaborative environmental change consequences research with various partners including the National Science Foundation, the National Oceanic and Atmospheric Administration, and the US Fish and Wildlife Service. The Land Cover project can provide geographic understanding of the state of the nation's ecosystems. The project is scheduled to be completed by 2010 and expected to provide an unbiased, national synthesis of land-cover changes.

Military Engineer↗

San Diego Multiple Species Conservation Program (MSCP) Rare Plant Monitoring Review and Revision

Introduction The San Diego Multiple Species Conservation Program (MSCP) was developed for the conservation of plants and animals in the south part of San Diego County, under the California Natural Community Conservation Planning Act of 1991 (California Department of Fish and Game) and the Federal Endangered Species Act of 1973, as amended (16 U.S. Code 1531-1544.) The Program is on the leading edge of conservation, as it seeks to both guide development and conserve at-risk species with the oversight of both State and Federal agencies. Lands were identified for inclusion in the MSCP based on their value as habitat for at-risk plants or plant communities (Natural Community Conservation Planning, 2005). Since its inception in the mid-1990s the Program has protected over 100,000 acres, involving 15 jurisdictions and the U.S. Fish and Wildlife Service (USFWS) and California Department of Fish and Game (CDFG) in the conservation of 87 taxa. Surveys for covered species have been conducted, and management and monitoring have been implemented at some high priority sites. Each jurisdiction or agency manages and monitors their conservation areas independently, while collaborating regionally for long-term protection. The San Diego MSCP is on the forefront of conservation, in one of the most rapidly growing urban areas of the country. The planning effort that developed the MSCP was state-of-the-art, using expert knowledge, spatial habitat modeling, and principles of preserve design to identify and prioritize areas for protection. Land acquisition and protection are ahead of schedule for most jurisdictions. Surveys have verified the locations of many rare plant populations known from earlier collections, and they provide general information on population size and health useful for further conservation planning. Management plans have been written or are in development for most MSCP parcels under jurisdictional control. Several agencies are developing databases for implementation and management tracking. In many ways this program is at the cutting edge of regional conservation, testing concepts, developing techniques, and demonstrating conservation effectiveness in new and uncharted ways. Periodic program review is crucial to the continued success of the program, as it moves from a phase of planning and acquisition to one of management and monitoring. Ecological monitoring is the key to assessing the success of the protection and management implemented at each individual reserve and for the MSCP as a whole. The ultimate goal of the Program is conservation of at-risk taxa and their habitats, as well as underlying ecological processes that contribute to sustainability of the ecosystem. Monitoring guidelines and timetables were developed by Ogden Environmental and Energy Services Co., Inc. (1996), and reviewed by Conservation Biology Institute (2001). The Program is in transition now, from the initial stage of land protection to one of land management and monitoring to determine population responses to management regimes. Several agencies have already invested substantial effort in status and trend monitoring, while others are developing their monitoring plans. Management is ongoing at several sites. With both management and monitoring, collaboration and coordination among jurisdictions can be especially fruitful in conserving resources and maximizing success.

Scientific Investigations Report↗

Assessing biological effects from highway-runoff constituents

Increased emphasis on evaluation of nonpoint-source pollution has intensified the need for techniques that can be used to discern the toxicological effects of complex chemical mixtures. In response, the use of biological assessment techniques is receiving increased regulatory emphasis. When applied with documented habitat assessment and chemical analysis, these techniques can increase our understanding of the influence of environmental contaminants on the biological integrity and ecological function of aquatic communities. The contaminants of greatest potential concern in highway runoff are those that arise from highway construction, maintenance, and use. The major contaminants of interest are deicers; nutrients; metals; petroleum-related organic compounds, such as polycyclic aromatic hydrocarbons (PAHs), benzene, toluene, ethylbenzene, and xylene (BTEX), and methyl tert -butyl ether (MTBE); sediment washed off the road surface; and agricultural chemicals used in highway maintenance. Hundreds, if not thousands, of biological endpoints (measurable responses of living organisms) may be either directly or associatively affected by contaminant exposure. Measurable effects can occur throughout ecosystem processes across the wide range of biological complexity, ranging from responses at the biochemical level to the community level. The challenge to the environmental scientist is to develop an understanding of the relationship of effects at various levels of biological organization in order to determine whether a causal relationship exists between chemical exposure and substantial ecological impairment. This report provides a brief history of the evolution of biological assessment techniques, a description of the major classes of contaminants that are of particular interest in highway runoff, an overview of representative biological assessment techniques, and a discussion of data-quality considerations. Published reports with a focus on the effects of highway runoff on the local ecosystem were reviewed to provide information on (1) the suitability of the existing data for a quantitative national synthesis, (2) the methods available to study the effects of highway runoff on local ecosystems, and (3) the potential for adverse effects on the roadside environment and receiving waters. Although many biological studies have been done, the use of different methods and a general lack of sufficient documentation precludes a quantitative national synthesis on the basis of the existing data. The Federal Highway Administration, the U.S. Environmental Protection Agency, the U.S. Geological Survey, the Intergovernmental Task Force on Monitoring Water Quality, and the National Resources Conservation Service all have developed and documented methods for assessing the effects of contaminants on ecosystems in receiving waters. These published methods can be used to formulate a set of protocols to provide consistent information from highway-runoff studies. Review of the literature indicates (qualitatively) that highway runoff (even from highways with high traffic volume) may not usually be acutely toxic. Tissue analysis and community assessments, however, indicate effects from highway- runoff sediments near discharge points (even from sites near highways with relatively low traffic volumes). At many sites, elevated concentrations of highway-runoff constituents were measured in tissues of species associated with aquatic sediments. Community assessments also indicate decreases in the diversity and productivity of aquatic ecosystems at some sites receiving highway runoff. These results are not definitive, however, and depend on many site-specific criteria that were not sufficiently documented in most of the studies reviewed.

Open-File Report↗

Conservation planning for the Colorado River in Utah

Strategic planning is increasingly recognized as necessary for providing the greatest possible conservation benefits for restoration efforts. Rigorous, science-based resource assessment, combined with acknowledgement of broader basin trends, provides a solid foundation for determining effective projects. It is equally important that methods used to prioritize conservation investments are simple and practical enough that they can be implemented in a timely manner and by a variety of resource managers. With the help of local and regional natural resource professionals, we have developed a broad-scale, spatially-explicit assessment of 146 miles (~20,000 acres) of the Colorado River mainstem in Grand and San Juan Counties, Utah that will function as the basis for a systematic, practical approach to conservation planning and riparian restoration prioritization. For the assessment we have: 1) acquired, modified or created spatial datasets of Colorado River bottomland conditions; 2) synthesized those datasets into habitat suitability models and estimates of natural recovery potential, fire risk and relative cost; 3) investigated and described dominant ecosystem trends and human uses, and; 4) suggested site selection and prioritization approaches. Partner organizations (The Nature Conservancy, National Park Service, Bureau of Land Management and Utah Forestry Fire and State Lands) are using the assessment and datasets to identify and prioritize a suite of restoration actions to increase ecosystem resilience and improve habitat for bottomland species. Primary datasets include maps of bottomland cover types, bottomland extent, maps of areas inundated during high and low flow events, as well as locations of campgrounds, roads, fires, invasive vegetation treatment areas and other features. Assessment of conditions and trends in the project area entailed: 1) assemblage of existing data on geology, changes in stream flow, and predictions of future conditions; 2) identification of fish and wildlife species present and grouping species into Conservation Elements (CEs) based on habitat needs, and: 3) acquisition, review and creation of spatial datasets characterizing vegetation, fluvial geomorphic and human features within the bottomland. Interpretation of aerial imagery and assimilation of pre-existing spatial data were central to our efforts in characterizing resources conditions. Detailed maps of vegetation and channel habitat features in the project area were generated from true color, high resolution (0.3m) imagery flown September 16, 2010. We also mapped channel habitat features at high flow on 1.0-m resolution, publicly available, true color imagery. We obtained additional layers such as land ownership, roads, fire history, non-native vegetation treatment areas, and recreational use features from public sources and project partners. Habitat suitability models were created for groups of terrestrial species by combining spatial datasets with the habitat needs of conservation elements, guided by literature, where available, and extensive use of expert knowledge. Conservation elements for endangered fish species life stages were identified but not modeled. Terrestrial CE’s included: • Riparian Overstory -yellow-billed cuckoo, Bullock’s oriole, black-headed grosbeak, blue grosbeak, warbling vireo, Cooper's hawk, screech owl, saw-whet owl, and bald eagle, (best: tall trees, dense canopy, diverse shrub understory, no tamarisk); • Riparian Understory - southwestern willow flycatcher, common yellowthroat, yellow warbler, yellow-breasted chat, beaver, northern river otter, black-necked garter snake, (best: dense mesic shrubs near still water, no tamarisk); • Bat Feeding - Allen's big-eared bat, Townsend's big-eared bat, fringed myotis, Yuma myotis, big free-tailed bat, spotted bat (best: diverse vegetation, close to still water); • Bat Watering - big free-tailed and spotted bats (best: still water with no tall vegetation); •

Utah↗

Summary of science, activities, programs, and policies that influence the rangewide conservation of Greater Sage-Grouse (Centrocercus urophasianus)

The Greater Sage-Grouse, has been observed, hunted, and counted for decades. The sagebrush biome, home to the Greater Sage-Grouse, includes sagebrush-steppe and Great Basin sagebrush communities, interspersed with grasslands, salt flats, badlands, mountain ranges, springs, intermittent creeks and washes, and major river systems, and is one of the most widespread and enigmatic components of Western U.S. landscapes. Over time, habitat conversion, degradation, and fragmentation have accumulated across the entire range such that local conditions as well as habitat distributions at local and regional scales are negatively affecting the long-term persistence of this species. Historic patterns of human use and settlement of the sagebrush ecosystem have contributed to the current condition and status of sage-grouse populations. The accumulation of habitat loss, persistent habitat degradation, and fragmentation by industry and urban infrastructure, as indicated by U.S. Fish and Wildlife Service (USFWS) findings, presents a significant challenge for conservation of this species and sustainable management of the sagebrush ecosystem. Because of the wide variations in natural and human history across these landscapes, no single prescription for management of sagebrush ecosystems (including sage-grouse habitats) will suffice to guide the collective efforts of public and private entities to conserve the species and its habitat. This report documents and summarizes several decades of work on sage-grouse populations, sagebrush as habitat, and sagebrush community and ecosystem functions based on the recent assessment and findings of the USFWS under consideration of the Endangered Species Act. As reflected here, some of these topics receive a greater depth of discussion because of the perceived importance of the issue for sagebrush ecosystems and sage-grouse populations. Drawing connections between the direct effects on sagebrush ecosystems and the effect of ecosystem condition on habitat condition, and finally the connection between habitat quality and sage-grouse population dynamics remains an important goal for science, management, and conservation. This effort is necessary, despite the perception that these complicated, indirect relations are difficult to characterize and manage, and the many advances in understanding and application developed toward this end have been documented here to help inform regional planning and policy decisions.

Arizona;California;Colorado;Montana;Nebraska;Nevad↗