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Macroinvertebrate instream flow studies after 20 years: A role in stream management and restoration

Over the past two decades of refinement and application of instream flow evaluations, we have examined the hydraulic habitat of aquatic macroinvertebrates in a variety of conditions, along with the role of these macroinvertebrates in sustaining ecosystem integrity. Instream flow analyses assume that predictable changes in channel flow characteristics can, in turn, be used to predict the change in the density or distribution of lotic species or, more appropriately, the availability of useable habitat for those species. Five major hydraulic conditions most affect the distribution and ecological success of lotic biota: suspended load, bedload movement, and water column effects, such as turbulence, velocity profile, and substratum interactions (near-bed hydraulics). The interactions of these hydraulic conditions upon the morphology and behavior of the individual organisms govern the distribution of aquatic biota. Historically, management decisions employing the Physical Habitat Simulation (PHABSIM) have focused upon prediction of available habitat for life stages of target fish species. Regulatory agencies have rarely included evaluation of benthos for flow reservations. Although ‘taxonomic discomfort’ may be cited for the reluctant use or creation of benthic criteria, we suggest that a basic misunderstanding of the links between benthic macroinvertebrate and the fish communities is still a problem. This is derived from the lack of a perceived ‘value’ that can be assigned to macroinvertebrate species. With the exception of endangered mussel species (for which PHABSIM analysis is probably inappropriate), this is understandable. However, it appears that there is a greater ability to predict macroinvertebrate distribution (that is, a response to the change in habitat quality or location) and diversity without complex population models. Also, habitat suitability criteria for water quality indicator taxa (Ephemeroptera, Plecoptera, and Trichoptera; the so-called ‘EPTs’) may also provide additional management options to stream regulators. The greatest application for macroinvertebrate criteria will be in low-order streams where a more immediate link to fish communities can be established. We present an example from Queens Creek, in North Carolina, USA, in which monthly allocations required to preserve the integrity of the benthic macroinvertebrate community were significantly higher than for the target benthic fish species, Cottus bairdi . In the months when both Cottus and community diversity of macroinvertebrates were the ‘bottleneck’ life stages, preservation of only fish species could result in an additional 5–25% loss in macroinvertebrate habitat. We suggest that, as there becomes an increased emphasis on maintaining macroinvertebrates as monitors of stream health, there will be a concurrent emphasis on incorporating hydraulic habitat conditions as a part of bioassessment.

Regulated Rivers: Research & Management↗

Use of chemical analysis and assays of semipermeable membrane devices extracts to assess the response of bioavailable organic pollutants in streams to urbanization in six metropolitan areas of the United States

Studies to assess the effects of urbanization on stream ecosystems are being conducted as part of the U.S. Geological Survey’s National Water-Quality Assessment (NAWQA) Program. The overall objectives of these studies are to (1) determine how hydrologic, geomorphic, water quality, habitat, and biological characteristics respond to land-use changes associated with urbanization in specific environmental settings, and (2) compare these responses across environmental settings. As part of an integrated assessment, semipermeable membrane devices (SPMDs) were deployed in streams along a gradient of urban land-use intensity in and around Atlanta, Georgia; Raleigh-Durham, North Carolina; and Denver-Fort Collins, Colorado, in 2003; and Dallas-Fort Worth, Texas; Milwaukee-Green Bay, Wisconsin; and Portland, Oregon, in 2004. Sites were selected to avoid point-source discharge and to minimize natural variability within each of the six metropolitan areas. In addition to standard chemical analysis for hydrophobic organic contaminants, three assays were used to address mixtures and potential toxicity: (1) Fluoroscan provides an estimate of the total concentration of polycyclic aromatic hydrocarbons (PAHs); (2) the P450RGS assay indicates the presence and levels of aryl hydrocarbon receptor agonists; and (3) Microtox® measures toxicological effects on photo-luminescent bacteria. Of the 140 compounds targeted or identified by gas chromatography/mass spectrometry analysis in this study, 67 were not detected. In terms of numbers and types of compounds, the following were detected: 2 wood preservatives, 6 insecticides (parent compounds), 5 herbicides, 22 polycyclic aromatic hydrocarbons, 2 dibenzofurans, 4 polychlorinated biphenyls, 7 compounds associated with fragrances or personal care products, 4 steroids associated with wastewater, 5 polydibromated diphenyl ethers (flame retardants), 3 plasticizers, 3 antimicrobials/disinfectants, and 3 detergent metabolites. Of the 73 compounds detected and three assays utilized, 29 were detected in 25 percent or more of the streams and were strongly related to increases in urban intensity (defined as having a Spearman’s rho > 0.5 with percent urban land cover) in at least one of the six metropolitan areas investigated. These 29 endpoints included 16 PAHs, a wood preservative (pentachloroanisole), 2 insecticides (chlorpyrifos and chlordane), 3 herbicides (benfluralin, trifluralin, and dacthal), a synthetic musk (hexahydrohexamethylcyclopentabenzopyran, HHCB), 2 furans (methyldibenzofuran and benzo[b]naphtho[2,3-d]furan), and a flame retardant (BDE 47). In addition, the number of compounds detected and results of the Fluoroscan and P450RGS assays were strongly related to urban intensity. Average water concentrations estimated from SPMDs were compared to screening benchmarks for the protection of human health and aquatic life; of the 14 compounds with available benchmarks, 3 compounds (anthracene, dieldrin, and diazinon) exceeded those levels in one or more streams. Both dieldrin and anthracene exceeded their respective benchmarks in seven streams, and diazinon in only one stream. There were more exceedances in Milwaukee-Green Bay and Raleigh-Durham than in the other metropolitan areas, and there were no exceedances in Dallas-Fort Worth. The six metropolitan areas studied differed in the number and types of endpoints related to urban intensity, probably from a combination of factors governing source strength, transport, and fate of hydrophobic compounds. The number of endpoints strongly related to urban intensity ranged from 3 in Dallas-Fort Worth and Portland to 21 in Raleigh-Durham. High frequencies of detection and strong correlations with urban land cover for pyrogenic PAHs (such as unsubstituted 4-ringed PAHs) in all six metropolitan areas indicate that these compounds are an important component of urbanization, regardless of location. Pentachloroanisole, dibenzofurans, and petrogenic PAHs (alkylated PAHs and heterocyclic dibenzothiophenes) were frequently detected and strongly related to urban intensity in Atlanta, Raleigh-Durham, Milwaukee-Green Bay, and Denver-Fort Collins. Two insecticides were related to urban intensity: chlorpyrifos in Atlanta, Raleigh-Durham, and Dallas-Fort Worth; and chlordane in Raleigh-Durham. Three herbicides were strongly related to urban intensity: trifluralin in Atlanta and Raleigh-Durham; benfluralin in Atlanta, and dacthal in Denver-Fort Collins. The detection frequencies for most wastewater indicator compounds were too low to establish relations with urban intensity. Of the wastewater compounds analyzed, HHCB in Raleigh-Durham and Denver-Fort Collins, and BDE 47 in Denver-Fort Collins and Dallas-Forth Worth, had the strongest relations with urban intensity. In addition to pyrogenic PAHs, levels of aryl hydrocarbon receptor agonists (as measured by the P450RGS assay) were strongly related to increasing urban intensity in all six metropolitan areas. PAHs were the only group of aryl hydrocarbon agonists consistently detected and related with urban intensity in all six metropolitan areas. It is unknown which compounds in the SPMDs caused the increased response in the P450RGS assay because the SPMDs likely contained many aryl hydrocarbon receptor agonists not quantified by chemical analysis. It is clear that bioavailable, aryl hydrocarbon receptor agonists increase in streams with increasing urban intensity in the basin. Potential toxicity mediated by this metabolic pathway should be considered in integrated assessments of the response of aquatic biota to urbanization.

Scientific Investigations Report↗

White-nose syndrome in bats: U.S. Geological Survey updates

White-nose syndrome (WNS) is a devastating disease that has killed millions of hibernating bats since it first appeared in New York in 2007 and has spread at an alarming rate from the northeastern to the central United States and Canada. The disease is named for the white fungus Geomyces destructans that infects the skin of the muzzle, ears, and wings of hibernating bats. The U.S. Geological Survey (USGS) National Wildlife Health Center (NWHC), the USGS Fort Collins Science Center, the U.S. Fish and Wildlife Service, and other partners continue to play a primary role in WNS research. Studies conducted at the NWHC led to the discovery (Blehert and others, 2009), characterization, and naming (Gargas and others, 2009) of the cold-loving fungus G. destructans and to the development of standardized criteria for diagnosing the disease (Meteyer and others, 2009). Additionally, scientists at the NWHC have pioneered laboratory techniques for studying the effects of the fungus on hibernating bats (Lorch and others, 2011). To determine if bats are affected by white-nose syndrome, scientists look for a characteristic microscopic pattern of skin erosion caused by G. destructans (Meteyer and others, 2009). Field signs of WNS can include visible white fungal growth on the bat's muzzle, wings, or both, but these signs alone are not a reliable disease indicator - laboratory examination and testing are required for disease confirmation. Infected bats also arouse from hibernation more frequently than uninfected bats (Warnecke and others, 2012) and often display abnormal behaviors in their hibernation sites, such as congregating at or near cave openings and daytime flights during winter. These abnormal behaviors may contribute to the bat's accelerated consumption of stored fat reserves, causing emaciation, a characteristic documented in some of the bats that die with WNS. During hibernation, bats likely have lowered immunity (Bouma and others, 2010), which may facilitate the ability of G. destructans to colonize and damage large areas of wing membrane (fig. 2). A current hypothesis suggests that erosion or ulceration of wing membrane caused by the fungus has the potential to alter the physiology of hibernating bats, resulting in fatal disruption of hydration, electrolyte balance, circulation, and thermoregulation (Cryan and others, 2010). Current estimates of bat population declines in the northeastern United States since the emergence of WNS are over 80 percent (Turner and others, 2011). This sudden and widespread mortality associated with WNS is unprecedented in hibernating bats, among which large-scale disease outbreaks have not been previously documented. It is unlikely that species of bats affected by WNS will recover quickly because most are long-lived and have only a single pup per year. Consequently, repopulation after widespread mortality of breeding adults will be a slow process. Worldwide, bats play essential roles as pollinators, seed dispersers, and as primary consumers of insects. The true ecological consequences of the recent large-scale reductions in populations of hibernating bats are not yet known. However, farmers might feel the impact. A recent economic analysis indicated that insect control services (ecosystem services) provided by bats to U.S. agriculture is valued between 4 to 50 billion dollars nationwide per year (Boyles and others, 2011). The number of North American bats estimated to have died from WNS thus far had the capacity to consume up to 8,000 tons of insects per year (Boyles and others, 2011). The area of North America affected by WNS continues to expand. Within the last 2 years, the disease has been confirmed in several Central States, including Alabama, Indiana, Kentucky, Ohio, Tennessee, and Missouri. High mortality of bats has not yet been reported at these locations, and it remains to be seen if WNS will develop and manifest in other States with the same severity as that in the Northeast.

Alabama;Connecticut;Delaware;Illinois;Indiana;Iowa↗

Myxobolus cerebralis in native cutthroat trout of the Yellowstone Lake ecosystem

The exotic parasite Myxobolus cerebralis was first detected in native adult Yellowstone cutthroat trout Oncorhynchus clarkii bouvierii from Yellowstone Lake in 1998, seriously threatening the ecological integrity of this pristine, naturally functioning ecosystem. We immediately began to assess the prevalence and spatial extent of M. cerebralis infection in Yellowstone cutthroat trout within Yellowstone Lake and to determine the infection risk of age-0 Yellowstone cutthroat trout, the relative abundance and actinospore production of lubificid worms, and the basic environmental characteristics of tributaries. During 1999-2001, juvenile and adult Yellowstone cutthroat trout were infected throughout Yellowstone Lake; the highest prevalence (15.3-16.4%) occurred in the northern and central regions. Exposure studies in 13 streams indicated that Pelican and Clear creeks and the Yellowstone River were positive for M. cerebralis; the highest prevalence (100%) and severity was found in Pelican Creek during mid-July. Sexually mature individuals of the oligochaete Tubifex tubifex were most abundant in early summer, were genetically homogenous, and were members of a lineage known to produce moderate to high levels of M. cerebralis triactinomyxons. Only 20 of the 3,037 sampled tubificids produced actinospores after 7 d in culture, and none of the actinospores were M. cerebralis. However, one non-actinospore-producing T. tubifex from Pelican Creek tested positive for M. cerebralis by polymerase chain reaction. Stream temperatures at Pelican Creek, a fourth-order, low-gradient stream, were over 20??C during the first exposure period, suggesting that T. tubifex were capable of producing triactinomyxons at elevated temperatures in the wild. Although the infection of otherwise healthy adult Yellowstone cutthroat trout within Yellowstone Lake suggests some resistance, our sentinel cage exposures indicated that this subspecies may be more susceptible to whirling disease than previous laboratory challenges have indicated, and M. cerebralis may be contributing to a significant recent decline in this population. ?? Copyright by the American Fisheries Society 2006.

Wyoming↗

Effects of Abandoned Coal-Mine Drainage on Streamflow and Water Quality in the Mahanoy Creek Basin, Schuylkill, Columbia, and Northumberland Counties, Pennsylvania, 2001

This report assesses the contaminant loading, effects to receiving streams, and possible remedial alternatives for abandoned mine drainage (AMD) within the Mahanoy Creek Basin in east-central Pennsylvania. The Mahanoy Creek Basin encompasses an area of 157 square miles (407 square kilometers) including approximately 42 square miles (109 square kilometers) underlain by the Western Middle Anthracite Field. As a result of more than 150 years of anthracite mining in the basin, ground water, surface water, and streambed sediments have been adversely affected. Leakage from streams to underground mines and elevated concentrations (above background levels) of acidity, metals, and sulfate in the AMD from flooded underground mines and (or) unreclaimed culm (waste rock) degrade the aquatic ecosystem and impair uses of the main stem of Mahanoy Creek from its headwaters to its mouth on the Susquehanna River. Various tributaries also are affected, including North Mahanoy Creek, Waste House Run, Shenandoah Creek, Zerbe Run, and two unnamed tributaries locally called Big Mine Run and Big Run. The Little Mahanoy Creek and Schwaben Creek are the only major tributaries not affected by mining. To assess the current hydrological and chemical characteristics of the AMD and its effect on receiving streams, and to identify possible remedial alternatives, the U.S. Geological Survey (USGS) began a study in 2001, in cooperation with the Pennsylvania Department of Environmental Protection and the Schuylkill Conservation District. Aquatic ecological surveys were conducted by the USGS at five stream sites during low base-flow conditions in October 2001. Twenty species of fish were identified in Schwaben Creek near Red Cross, which drains an unmined area of 22.7 square miles (58.8 square kilometers) in the lower part of the Mahanoy Creek Basin. In contrast, 14 species of fish were identified in Mahanoy Creek near its mouth at Kneass, below Schwaben Creek. The diversity and abundance of fish species in Mahanoy Creek decreased progressively upstream from 13 species at Gowen City to only 2 species each at Ashland and Girardville. White sucker (Catostomus commersoni), a pollution-tolerant species, was present at each of the surveyed reaches. The presence of fish at Girardville was unexpected because of the poor water quality and iron-encrusted streambed at this location. Generally, macroinvertebrate diversity and abundance at these sites were diminished compared to Schwaben Creek and other tributaries draining unmined basins, consistent with the observed quality of streamwater and streambed sediment. Data on the flow rate and chemistry for 35 AMD sources and 31 stream sites throughout the Mahanoy Creek Basin were collected by the USGS during high base-flow conditions in March 2001 and low base-flow conditions in August 2001. A majority of the base-flow streamwater samples met water-quality standards for pH (6.0 to 9.0); however, few samples downstream from AMD sources met criteria for acidity less than alkalinity (net alkalinity = 20 milligrams per liter as CaCO3) and concentrations of dissolved iron (0.3 milligram per liter) and total manganese (1.0 milligram per liter). Iron, aluminum, and various trace elements including cobalt, copper, lead, nickel, and zinc, were present in many streamwater samples at concentrations at which continuous exposure can not be tolerated by aquatic organisms without an unacceptable effect. Furthermore, concentrations of sulfate, iron, manganese, aluminum, and (or) beryllium in some samples exceeded drinking-water standards. Other trace elements, including antimony, arsenic, barium, cadmium, chromium, selenium, silver, and thallium, did not exceed water-quality criteria for protection of aquatic organisms or human health. Nevertheless, when considered together, concentrations of iron, manganese, arsenic, cadmium, chromium, copper, lead, nickel, and zinc in a majority of the streambed sediment samples from Mahanoy Creek and

Scientific Investigations Report↗

Reduced Myxobolus cerebralis actinospore production in a Colorado reservior may be linked to changes in Tubifex tubifex population structure

Elucidating the dynamics of a parasitic infection requiring two hosts in a natural ecosystem can be a daunting task. Myxobolus cerebralis (Mc), the myxozoan parasite that causes whirling disease in some salmonids, was detected in the Colorado River upstream of Windy Gap Reservoir (WGR) in 1988. Subsequently, whirling disease was implicated in the decline of wild Rainbow Trout Oncorhynchus mykiss in the river when WGR was identified as a point source of Mc triactinomyxons (TAMs). Between 1997 and 2004, numerous investigations began to elucidate the etiology of Mc in WGR. During this period, Mc TAM production in WGR declined more than 90%. Explanations for the decline have included differences in stream discharge between years, changes in the thermal regime of the lake, severe drought, changes in the fish population structure in WGR, and reductions in the prevalence and severity of Mc infection in salmonids in the Colorado and Fraser rivers upstream of WGR. All of these have been discredited as explanations for the reduced TAM production. In 2005, a new study was conducted to replicate the studies completed in 1998. In this paper, the results of a new real-time polymerase chain reaction assay utilized to quantify the mitochondrial 16S rDNA specific to each of four lineages of Tubifex tubifex in pooled samples of 50 oligochaetes are presented. These results suggest that compared with 1998, the densities of aquatic oligochaetes and T. tubifex have increased, TAM production has been greatly reduced, and the decline is congruent with the dominance of lineages I, V, and VI of T. tubifex—three lineages that are refractory or highly resistant to Mc infection—in the oligochaete population. While it is possible that the resistant lineages function as biofilters that deactivate Mc myxospores, the reason for the decline in TAM production in WGR remains an enigma.

Colorado↗

Ecological assessment of wadeable streams on O`ahu, Hawai'i, 2006-2007: A pilot study

In 2006–07, the U.S. Geological Survey (USGS) Pacific Islands Water Science Center (PIWSC), in cooperation with the Hawai‘i Department of Health (HDOH), conducted a pilot study as a participant in the U.S. Environmental Protection Agency’s (USEPA) Wadeable Streams Assessment (WSA) program. Forty randomly selected sites on perennial streams on O‘ahu, Hawai‘i, were surveyed for habitat characteristics, water chemistry, and benthic macroinvertebrate assemblages. Of the original sampling frame of approximately 505.2 miles of perennial stream, roughly 96.7±30.7 miles were found to be nonperennial or estuarine and another 200.5±64.7 miles were judged to be inaccessible. The scope of this report presents an assessment of the remaining 208±57.6 miles of accessible, wadeable, perennial stream length on O‘ahu. Benthic macroinvertebrate assemblages were used to determine the ecological condition at each site. Components of the benthic macroinvertebrate assemblages were assessed using the multimetric Preliminary–Hawaiian Benthic Index of Biotic Integrity (P–HBIBI) developed by Wolff (2005). Based on the P–HBIBI scores, an estimated 5.8±5.8 percent of the island’s total stream length is in most disturbed condition, 56±13.5 percent is in intermediately disturbed condition, and 38.2±13.2 percent is in least disturbed condition. Windward O‘ahu had the highest percentage of stream length in least disturbed biological condition at 56.7±20.8 percent. Using the relative abundance of insects, one of the core metrics that make up the P–HBIBI, 43.4±14.2 percent of the islandwide stream length was classified in the most disturbed condition—52±31.2 percent of the Honolulu region stream length and 51.4±23.3 percent of the windward O‘ahu stream length. An analysis of total nitrogen (N) estimated approximately 41.1±13.7 percent of the stream length on O‘ahu was in most disturbed condition. Regionally, the Honolulu region had the largest proportion, 61.3±28.6 percent, of most disturbed stream length in terms of total N. An analysis of total phosphorus (P) classified approximately 43.2±14 percent of the stream length on O‘ahu as most disturbed. Regionally, windward O‘ahu had the largest proportion, 78.4±19.5 percent, of stream length classified as most disturbed. An analysis of embeddedness classified 30.3±14.7 percent of O‘ahu’s stream length as most. Regionally, windward O‘ahu had the largest proportion, 43.3±17.1 percent, of stream length classified as most disturbed as compared to the reference condition. An analysis of riparian disturbance, an index of the in-channel, riparian, and near-stream human activities, classified 43±13 percent of stream length on O‘ahu as most disturbed. The Honolulu region had the largest proportion of stream length, 86.3±13.7 percent, classified as most disturbed. The information in this report is the first attempt in Hawai‘i to assess the islandwide ecological condition of wadeable, perennial streams on O‘ahu using the USEPA WSA probabilistic design. This study has demonstrated that such an assessment is practical and that it can provide information that may help the USEPA and HDOH in determining the status of aquatic ecosystems on O‘ahu, Hawai‘i. This study provides a baseline assessment of the current islandwide ecological condition and identifies potential environmental stressors. It can be used, with future WSA studies in Hawai‘i, to measure the changes in those conditions and the effectiveness of management efforts to protect, restore, and maintain Hawai‘i’s aquatic environment.

Hawaii↗

Mercury in the Walker River Basin, Nevada and California: Sources, distribution, and potential effects on the ecosystem

Mercury is one of the most serious contaminants of water, sediment, and biota in Nevada because of its use during 19th century mining activities to recover gold and silver from ores. In 1998, mercury problems were discovered in the Walker River Basin of California and Nevada when blood drawn from three common loons from Walker Lake was analyzed and found to have severely elevated mercury levels. From 1999 to 2001, the U.S. Geological Survey and the U.S. Fish and Wildlife Service collected water, sediment, and biological samples to determine mercury sources, distribution, and potential effects on the Walker River Basin ecosystem. Total-mercury concentrations ranged from 0.62 to 57.11 ng/L in streams from the Walker River system and ranged from 1.02 to 26.8 ng/L in lakes and reservoirs. Total-mercury concentrations in streambed sediment ranged from 1 to 13,600 ng/g, and methylmercury concentrations ranged from 0.07 to 32.1 ng/g. The sediment-effects threshold for mercury for fresh-water invertebrates is 200 ng/g, which was exceeded at nine stream sites in the Walker River Basin. The highest mercury concentrations were in streams with historic mines and milling operations in the watershed. The highest mercury concentration in sediment, 13,600 ng/g, was found in Bodie Creek near Bodie, Calif., a site of extensive gold mining and milling activities during the 19th century. Sediment cores taken from Walker Lake show total-mercury concentrations exceeding 1,000 ng/g at depths greater than 15 cm below lake bottom. The presence of 137Cs above 8 cm in one core indicates that the upper 8 cm was deposited sometime after 1963. The mercury peak at 46 cm in that core, 2,660 ng/g, likely represents the peak of mining and gold extraction in the Bodie and Aurora mining districts between 1870 and 1880. Mercury concentrations in aquatic invertebrates at all sites downstream from mining activities in the Rough Creek watershed, which drains the Bodie and Aurora mining districts, were elevated (range 0.263 to 0.863 ?g/g, dry weight). Mercury concentrations in the Walker Lake tui chub, the most abundant and likely prey for common loons, ranged from approximately 0.09 ?g/g to approximately 0.9 ?g/g (wet weight). Larger tui chub in the lake, which are most likely older, had the highest mercury concentrations. Blood samples from 94 common loons collected at Walker Lake between 1998 and 2001 contained a mean mercury concentration of 2.96 ?g/g (standard deviation 1.72 ?g/g). These levels were substantially higher than those found in more than 1,600 common loons tested across North America. Among the 1,600 common loons, the greatest blood mercury concentration, 9.46 ?g/g, was from a loon at Walker Lake. According to risk assessments for northeastern North America, blood mercury concentrations exceeding 3.0 ?g/g cause behavioral, reproductive, and physiological effects. At least 52 percent of the loons at Walker Lake are at risk for adverse effects from mercury on the basis of their blood-mercury concentrations. The larger loons staging in the spring are the most at risk group. The elevated mercury levels found in tui chub and common loons indicate that there is a potential threat to the well being and reproduction of fish and wildlife that use Walker Lake. Wildlife that use Weber Reservoir may also be at risk because it is the first reservoir downstream from mining activities in the Bodie and Aurora areas and mercury concentrations in sediment were elevated. Additional data on mercury concentrations in top level predators, such as piscivorous fish and birds, are needed to assess public health and other environmental risks.

California, Nevada↗

Identical sequence types of Yersinia ruckeri associated with lethal disease in wild-caught invasive Blue Catfish and cultured hybrid catfish (Channel Catfish ♀ × Blue Catfish ♂) from disparate aquatic ecosystems

Objective The Blue Catfish Ictalurus furcatus is commonly raised in warmwater aquaculture in the United States to produce Channel Catfish I. punctatus × Blue Catfish hybrids. It is also a prominent aquatic invasive species of concern in the mid-Atlantic region of the United States. Here, Yersina ruckeri was isolated from moribund Blue Catfish and hybrid catfish from disparate regions of the USA. The goal of the research here was to compare these Y. ruckeri strains to each other and other known strains for which adequate sequence data was available. In addition, we sought to determine if the strain from Blue Catfish was pathogenic to Rainbow Trout Oncorhynchus mykiss . Methods Moribund hybrid catfish from culture ponds in Mississippi were processed for diagnostic evaluation in March 2016. In April 2022, a moribund Blue Catfish specimen was collected from a tributary of the Nanticoke River in Maryland. Bacterial isolates were identified and characterized using biochemical tests, antimicrobial sensitivity screening, serotyping, and complete or partial genome sequencing. Disease pathology was described via histology. The isolate from Blue Catfish was used in challenge experiments to determine if it was pathogenic to Rainbow Trout. Multilocus sequencing typing was conducted using the PubMLST database. Results Biochemical testing was consistent with Y. ruckeri . A draft genome of the Y. ruckeri isolate was assembled based on Oxford Nanopore Technology sequencing and identified a single genomic replicon (3,791,418 bp) consistent in size to other Y. ruckeri genomes and a pLT plasmid (60, 933 bp). The challenge study demonstrated no significant virulence of this isolate for Rainbow Trout ( Y. ruckeri ). This isolate was most similar to other strains isolated from ictalurids. Notably, the gyrase B gene from this isolate was identical to that of archived strains isolated from moribund Mississippi hybrid catfish aquaculture during 2016 and these isolates share identical PubMLST sequence type profiles. Similarly, they shared a pLT plasmid that differed by only 6 bp. This plasmid has never been reported from trout isolates and appears to be unique to ictalurids. Conclusions Analyses here provide preliminary genetic evidence that geographically distant (Maryland and Mississippi, USA) isolates of Y. ruckeri from ictalurids are genetically similar to each other and Y. ruckeri (strain SC09) that infects ictalurids in China. This strain is not a biothreat to Rainbow Trout at typical culture temperatures.

Journal of Aquatic Animal Health↗

Public views of wetlands and waterfowl conservation in the United States—Results of a survey to inform the 2018 update of the North American Waterfowl Management Plan

Executive Summary This report provides information from a general public survey conducted in early 2017 to help inform the North American Waterfowl Management Plan (NAWMP) 2018 update. This report is intended for use by the NAWMP advisory committees and anyone interested in the human dimensions of wetlands and waterfowl management. A mail-out survey was sent to 5,000 addresses in the United States, which were selected randomly in proportion to the population of each State. A total of 1,030 completed surveys representing 49 States were returned, resulting in a 23 percent overall response rate. When comparing the demographics of the respondents to the U.S. census data, this sample overrepresented people who are male, older, highly educated, and white. Data were weighted on gender and age to make the results more representative of the overall U.S. population. Additionally, this sample had higher participation rates in all wildlife-related recreation activities than has been found in previous studies; this indicates there may have been selection bias, with people interested in nature-related topics more likely to complete the survey. Therefore, results likely represent a segment of the U.S. public that is more oriented toward and aware of wildlife and conservation issues than the general public as a whole. Because of this bias, responses for each question were also broken down by recreationist type (hunters, anglers, wildlife viewers, and no wildlife-related recreation). Additionally, responses for each question were split by administrative flyway (Atlantic, Central, Mississippi, Pacific) and residency (urban, urban cluster, rural) to better understand the different groups. Most respondents knew of wetlands in their local area or community, and more than half had visited wetlands in the previous 12 months. Of those who had visited wetlands, the most common reasons were for walking/hiking/biking and enjoying nature/picnicking. In addition, this sample was very concerned about the reduction or loss of ecosystem services resulting from wetlands degradation or loss. A majority of respondents were somewhat or very concerned about 9 out of 10 wetlands benefits, with hunting opportunities being the only benefit the majority of people were not concerned about. People were the most concerned about clean water, clean air, and providing a home for wildlife. In contrast, people were least concerned about hunting opportunities and wetlands providing scenic places for inspiration or spiritual renewal. Communication about wetlands that focuses on habitat, clean air, and clean water may resonate with the widest variety of people. However, if communication is targeted toward wildlife-related recreationists, including more information about the recreation benefits of wetlands and emphasizing habitat benefits may be the most effective. Many people reported having participated in conservation behaviors in the last year. The most popular activity was making the yard more desirable to wildlife, with more than three-fourths of respondents participating, followed by donating money to support wildlife/habitat conservation and talking to others in their community about conservation issues. There was lower participation in conservation behavior specifically related to wetlands and waterfowl, with two-fifths of respondents voting for candidates or ballot issues to support wetlands/waterfowl conservation and one-third advocating for political action to conserve wetlands/waterfowl. In order to better understand how to reach out to the public on nature-related topics, preferences in information channels and trust in information sources were explored. Respondents were mostly likely to want to receive their information through personal experience, by reading or accessing online content, and through watching visual media online. People were least likely to want to receive information through listening to recorded audio media, attending educational opportunities, and listening to live audio media. These results emphasize the importance of having content available online in an easily accessible and appealing format. Visual media in particular seems to be preferred across a wide variety of people. Additionally, people had the highest trust in scientific organizations, universities/educational organizations, and friends/family/neighbors/colleagues. The least trusted sources were national media/news, religious organizations, and local media/news. Urban respondents had higher trust levels overall, particularly for the government. Hunters and those in rural areas had lower levels of trust in the government but higher trust in family/friends. In this sample, few respondents reported hunting waterfowl (5 percent) or hunting other game (16 percent) in the last year. Additionally, few respondents said they were very or somewhat likely to hunt waterfowl in the following 12 months. Even after considering that self-selection bias would make it more likely for hunters to respond to the survey, the relatively small number of respondents who identified as hunters reinforces that engagement of other wildlife-related recreationists is critical to meeting the third goal of the NAWMP 2012 revision—to increase numbers of wetlands/waterfowl conservationists. Many people also had negative perceptions of hunting. Half of the respondents stated that hunting would be unpleasant, and two-fifths believed hunting would be boring. In contrast, people had more favorable attitudes toward birdwatching, with only one-sixth saying it would be unpleasant and less than one-third saying it would be boring. A majority of respondents thought they could easily go hunting or birdwatching in the following 12 months. Overall, people had much more positive views toward birdwatching and expressed fewer barriers to participating in it. When asked what would prevent them from hunting, the most frequently stated reasons were moral opposition, no interest, personal health, and time constraints; for birdwatching, the most popular responses were nothing, no interest, and time constraints. These responses indicate it may be beneficial to move beyond hunting and find ways for other groups, such as birdwatchers, to play a more active role in conservation. Although not many people hunted and many people tended to have negative attitudes toward hunting, over three-fourths of people said they knew a hunter. Given that wildlife viewers, those who did not participate in wildlife-related recreation, and urban residents tended to have negative attitudes toward hunting and (or) were not interested in participating, attempting to recruit them to participate in hunting may not be effective. However, given how many people across all groups knew a hunter and the relatively high levels of trust people had in their friends/family, hunters may be effective ambassadors for promoting waterfowl and wetlands conservation among nonhunters. Additionally, because people had less preference for viewing waterfowl and other game birds compared to their preference for seeing hummingbirds and birds of prey, conservation efforts that extend beyond waterfowl and include other species that benefit from wetlands may have more appeal to a broader range of people.

Open-File Report↗

1993 Annual Report: San Francisco estuary regional monitoring program for trace substances

This first annual report of the San Francisco Estuary Regional Monitoring Program contains the results of monitoring measurements made in 1993. Measurements of conventional water quality parameters and trace contaminant concentrations were made at 16 stations throughout the Estuary three times during the year: the wet period (March), during declining Delta outflow (May), and during the dry period (September). Water toxicity tests were conducted at 8 of those stations. Measurements of sediment quality and contaminant concentrations were made at the same 16 stations during the wet and dry sampling periods. Sediment toxicity was measured at 8 of those stations. Transplanted, bagged bivalve bioaccumulation and condition was measured at 11 stations during the wet and dry sampling periods. Water Monitoring. Total or near-total (dissolved + particulate, see text) arsenic, cadmium, selenium, and dissolved (0.45 µm filtered) arsenic, cadmium, copper, nickel, silver, and zinc in water were highest in the South Bay. In general, dissolved metals in water were usually lowest in the Central Bay due to ocean influences. Near-total nickel and total mercury in water were highest in the northern estuary (San Pablo and Suisun Bays). Dissolved chromium and lead were highest at the Sacramento and San Joaquin River confluence stations. Six of the ten dissolved trace metals were highest in March during high runoff. Dissolved and total arsenic, selenium, and near-total cadmium were highest in September. Concentrations of trace organic contaminants are reported for the March sampling period. Total PAHs and PCBs were highest in the South Bay, but PCBs were also high in the Napa River. Dissolved PAHs were highest in the Central Bay, and dissolved PCBs were highest in the Napa River. Total and dissolved pesticides were highest in the Sacramento River and in the Extreme South Bay. Concentrations of trace elements in water (except selenium) were usually closely related with other environmental parameters. Total or near-total metals concentrations in water were most often associated with the amount of particulate material (TSS) in the water. Dissolved concentrations were usually associated with salinity or dissolved organic carbon (DOC) content. Dissolved PAHs were well correlated with TSS, but dissolved and total trace organic contaminants were poorly correlated with other water parameters. Based on deviations from conservative mixing of fresh and salt water, three different patterns of possible sources of metals were identified in 1993. For dissolved chromium and lead, rivers and local runoff appeared to be important sources. For dissolved arsenic, cadmium, copper, and nickel year-round inputs from the South Bay appeared to be important sources. Dissolved mercury, selenium, and zinc were associated with local runoff in the South Bay during the wet period. Dissolved silver did not fit any of these patterns. Although most contaminant concentrations were below water quality objectives, several trace contaminants were above the objectives at some stations. Comparisons to water quality objectives are used as a guide for evaluation of contaminant concentrations, but there are some differences in the way the RMP data are measured and that prescribed for regulatory purposes (see text). Concentrations of 5 metals in water were above EPA or Regional Basin Plan water quality objectives at six stations (see Table 30). Most of these elevated levels occurred at the northern estuary stations. Total PCB concentrations were above EPA human health objectives at all RMP stations. The pesticides chlordane, dieldrin, and DDTs were above the EPA objectives at several RMP stations, particularly at the northern-most, and river confluence stations. Although some of the contaminant concentrations were above water quality objectives, water toxicity tests (96 hour algal growth and 48 hour bivalve larval development tests) did not indicate toxicity (sometimes inconclusive) associated with the water samples collected at any of the RMP stations in 1993. Exposure to Bay San Francisco Estuary Regional Monitoring Program Regional Monitoring Program 1993 Report ii water actually enhanced algal growth at most stations. In addition to the Estuary-wide sampling, the Sacramento and San Joaquin Rivers were sampled upstream from their confluence. Stations in each river were sampled six times over a 6 week period of high flows. In the Sacramento River, seven of the ten dissolved metals measured had concentrations lower than those measured at the river confluence stations. Some metals concentrations in the San Joaquin River were higher, and some were lower than concentrations from the river confluence station. Metals concentrations in the Sacramento River were poorly related to river flow because the station at Rio Vista is under considerable tidal influence. In the San Joaquin River, flows were inversely related to 7 of 10 total metals concentrations. Sediment Monitoring. Concentrations of silver, mercury, and lead in sediment were highest in the South Bay. However, concentrations of most trace metals in sediments were highest in the northern estuary at stations with the finest (silt, clay) sediments. The northern estuary stations with the coarsest (sand, shell) sediments generally had the lowest metals concentrations. There were differences in concentrations of cadmium, lead, and selenium in sediments between the sampling periods, but no consistent trend as to which sampling period had higher values. In September, PAHs and PCBs in sediments were highest in the Central Bay, but pesticides in sediments were highest in the northern estuary and Extreme South Bay. NOAA’s Median Effects Ranges (ERM) for sediments were used as a guide for evaluation of sediment contaminant concentrations. Nickel was the only trace contaminant in sediment above the ERM guidelines, and it was high at all RMP stations. These high levels are probably due to natural, geologic sources. Although sediment contaminant concentrations were below ERMs, sediment toxicity tests (10 day amphipod mortality, and 48 hour bivalve larval development in elutriates) indicated toxicity at all stations tested. Sediment factors that could have caused the toxicity were not investigated. Bivalve Bioaccumulation. Mussels, oysters, and freshwater clams were transplanted to the RMP stations to evaluate bioaccumulation of trace substances. Trace metals were bioaccumulated at nearly all RMP stations. However, arsenic, lead, and mercury did not appear to bioaccumulate. There was generally more bioaccumulation during the dry season than during the wet season. In September, PAHs, PCBs, and pesticides accumulated in all samples. Bioaccumulation of PAHs and pesticides was generally highest at the river confluence stations, and the Napa River. PCBs accumulated most at Redwood Creek. There were substantial differences in the degree of bioaccumulation among the species. Oysters appeared to accumulate higher concentrations of trace metals than the other species, especially copper, which may be a natural phenomenon. There are no established tissue contaminant standards for trace metal and organic contaminants. Therefore, comparisons to Median International Standards (MIS) for human consumption, or U.S. Food and Drug Administration (USFDA) action levels for trace organics are used to evaluate the bioaccumulation results. Concentrations of selenium were higher than MIS guidelines at all stations during the wet season. Other trace metal concentrations were higher than MIS guidelines at various stations during one or the other sampling period. However, none of the bivalves contained concentrations above the USFDA or National Academy of Sciences (NAS) guidelines for trace organic contaminants. The transplanted bivalves survived well at all stations except in the Napa River where less than 35% survived during both sampling seasons. Measures of bivalve condition (dry weight, shell volume) indicated that bivalves deployed in the Central Bay grew significantly, but those at most other stations actually lost weight. Whether these differences were due to natural causes such as salinity or food supply, or to contamination, was not determined. Pilot Studies. Two pilot monitoring studies were conducted in 1993. A pilot study of Estuary hydrography and phytoplankton was conducted by scientists from the U.S. Summary Geological Survey in Menlo Park and U.C. Davis. Water column profiles at up to 37 stations were monitored along a transect of the Estuary run monthly between the South Bay and the Delta. The primary objective of this study was to define physical (salinity, temperature, suspended particulate matter, and light penetration), chemical (dissolved oxygen) and biological (chlorophyll a) characteristics of Estuary water that may influence other chemical and biological reactions. A second objective was to investigate planktonic indicators of ecosystem structure and function. The data collected in 1993 showed the extent and duration of the spring phytoplankton bloom in the South Bay, other localized blooms in the northern estuary, the stratification and mixing associated with the entrapment zone in the northern estuary, and mixing in the Estuary resulting from the high rainfall in 1993. Knowledge of the duration and extent of these natural features of the Estuary provide context for interpretation of the RMP contaminant data collected only 3 times per year. Another pilot study of suspended sediment transport processes was conducted by the USGS in Sacramento. This study used continuous recording sensors at Point San Pablo and the Bay Bridge to measure the amount of suspended sediment in the water at mid-depth and near the bottom, as well as tide height. The objectives of this study were to estimate which factors determine suspended solids concentrations in the Central Bay and to collect time series of suspended solids that are appropriate for continuous monitoring of suspended solids and for calibration and validation of numerical models. The investigators determined that spring tides accounted for most of the variation in suspended solids concentrations at the stations monitored, not runoff from the Sacramento or San Joaquin Rivers, or semidiurnal and diurnal tides. Comparisons were also made between measurements made by the continuous recordings and the RMP samples collected during the regular monitoring cruises. The different ways of measuring TSS were generally comparable, however only 3 measurements per year as made by the RMP could not provide the information of TSS variation actually occurring in the Estuary. This information is important because as shown by the RMP data, total contaminant concentrations in Estuary water is largely dependent on the TSS in the water. This implies that the RMP measurements alone cannot determine accurately the range of contaminant concentrations without better characterizing the dynamics of TSS. The RMP Pilot Studies are important to the developing RMP because they will help put RMP measurements into the perspective of Estuary processes and mechanisms at other time scales. The studies can relate those processes to the RMP measurements and will facilitate revision of sampling design and interpretation. Summaries of other monitoring activities pertinent to regional monitoring are also included in the Report: a description of the Regional Board’s Bay Protection Studies, the Sacramento Coordinated Monitoring Program, and a wetlands monitoring plan are included.

California↗

Characterization of and relations among precipitation, streamflow, suspended-sediment, and water-quality data at the U.S. Army Garrison Fort Carson and Piñon Canyon Maneuver Site, Colorado, water years 2016–18

Frequent and prolonged military training maneuvers are an intensive type of land use that may disturb land cover, compact soils, and have lasting effects on adjacent stream hydrology and ecosystems. To better understand the potential effect of military training on hydrologic and environmental processes, the U.S. Geological Survey in cooperation with the U.S. Army established hydrologic and water-quality data-collection networks at the U.S. Army Garrison Fort Carson (AGFC) in 1978 and at the Piñon Canyon Maneuver Site (PCMS) in 1982. The purpose of this report is to present precipitation, streamflow, suspended-sediment, and water-quality data collected by the U.S. Geological Survey at the AGFC and PCMS for water years (WYs) 2016–18 and to evaluate those data in relation to long-term data from the AGFC and PCMS. In WYs 2016–18, the U.S. Geological Survey monitored 26 sites on the AGFC and 17 sites on the PCMS for precipitation amount, streamflow, suspended sediment, and (or) water quality. On the AGFC, total annual precipitation in WYs 2016–18 was larger than the long-term mean for all 3 years at Rod and Gun Meteorologic Station at Fort Carson, CO (Rod and Gun). There were statistically significant upward trends in annual precipitation at Rod and Gun and Young Hollow Meteorologic Station at Fort Carson, CO (Young Hollow) with slopes of 1.25 and 0.66 inches per year (in/yr), respectively. The precipitation totals for WY 2017 were either the largest on record or in the top three for both sites and at Sullivan Park Meteorologic Station at Fort Carson, CO. On the PCMS, total annual precipitation was larger than the long-term mean in WYs 2016–18 at Brown Sheep Camp Meteorologic Station near Tyrone, CO; CIG Pipeline South Meteorologic Station near Simpson, CO; Bear Springs Hills Meteorologic Station near Houghton, CO (Bear Springs); and Upper Red Rock Canyon Meteorologic Station near Houghton, CO (Upper Red Rock). There were statistically significant upward trends in precipitation at Bear Springs and Upper Red Rock with slopes of 0.16 and 0.19 in/yr, respectively. The precipitation totals for WY 2017 were the largest on record for all sites except for Upper Bent Canyon Meteorological Station near Delhi, CO. Streamflow was calculated at 18 sites on the AGFC and 7 sites on the PCMS in at least 1 of WYs 2016–18. At AGFC, mean annual (or seasonal) streamflow in WYs 2016–18 was less than the long-term mean at 7 sites and greater than the long-term mean at 3 sites. There were statistically significant downward trends in mean annual or seasonal streamflow at Womack Ditch from Little Fountain Creek near Fort Carson, CO, and Ripley Ditch from Little Fountain Creek at Fort Carson, CO, with slopes of −0.036 and −0.028 cubic feet per second per year (ft 3 /s/y), respectively; and a significant upward trend in streamflow at Turkey Creek West Seepage below Teller Reservoir near Stone City, CO, with a slope of less than 0.001 ft 3 /s/y. Unlike for precipitation, the mean annual or seasonal streamflow for WY 2017 was not in the top 3 for any of the 12 sites with measured flow. At the PCMS, mean annual (or seasonal) streamflow was less than the long-term mean streamflow in WYs 2016–18 at the Taylor Arroyo below Rock Crossing near Thatcher, CO, and Bent Canyon Creek at Mouth near Timpas, CO, sites; and in WYs 2016 and 2018 at the Purgatoire River near Thatcher, CO (Purgatoire Thatcher), and Purgatoire River at Rock Crossing near Timpas, CO (Purgatoire Rock Crossing). There were no statistically significant trends in mean annual (or seasonal) streamflow at sites on the PCMS, and unlike for precipitation, the mean streamflow for WY 2017 was not in the top three for any sites except Purgatoire Rock Crossing. In WYs 2016–18, streamflow from sites on the AGFC and PCMS represented only a small fraction of streamflow in Fountain Creek or the Purgatoire River, and changes in streamflow that resulted from military maneuvers on the AGFC and PCMS were not likely to be detected in the downstream receiving waters. Suspended-sediment concentrations, loads, and yields for WYs 2016–18, were analyzed at two sites on the AGFC and five sites on the PCMS. On the AGFC, mean seasonal suspended-sediment concentrations ranged from 3.10 to 155 milligrams per liter (mg/L), mean seasonal suspended-sediment loads ranged from 0.04 to 27.1 tons per day (t/d), and seasonal suspended-sediment yields ranged from 0.28 to 216 tons per season per square mile (t/s/mi 2 ). Suspended-sediment yields at the two AGFC sites in WYs 2016–18 were all less than the long-term means. On the PCMS, mean seasonal suspended-sediment concentrations (at sites with some streamflow during a WY) ranged from 1.12 to 41.8 mg/L, mean suspended-sediment loads ranged from 0.01 to 13.1 t/d, and seasonal suspended-sediment yields ranged from 0.06 to 57.4 t/s/mi 2 . Suspended-sediment yields at the five PCMS sites in WYs 2016–18 were all less than the long-term means. In WYs 2016–18, mean daily suspended-sediment loads at Little Fountain were 1.3, 2.5, and 7.6 percent, respectively, of the mean daily suspended-sediment load at Fountain Creek at Security, Colorado. Likewise, the total of mean daily suspended-sediment loads from the five tributary sites to the Purgatoire River in WYs 2016–18 were about 0.25, 0.17, and 3.2 percent, respectively, of the historical mean daily suspended-sediment load at Purgatoire Thatcher. Spearman’s rank correlation coefficient was used to evaluate the strength and form of the relations between daily total precipitation and daily mean streamflow and between daily mean streamflow and suspended-sediment concentration and load for WYs 2016–18. For the sites on the AGFC and PCMS, there were weak or statistically insignificant positive correlations between precipitation and streamflow at nearby streamgauges, but strong statistically significant positive correlations between streamflow and suspended-sediment concentration and load. The ephemeral nature of the streams, quantity and timing of precipitation, air temperature, seasonal soil-moisture deficits, and effective runoff detention in erosion-control ponds could all contribute to inconsistent conversion of precipitation to streamflow. Water-quality data were analyzed for as many as 43 parameters from 9 samples collected from 3 sites on the AGFC and from 37 samples collected from 4 sites on PCMS during WYs 2016–18. The concentrations of selected water-quality parameters were compared to regulatory standards for aquatic life from the Colorado Department of Public Health and Environment (CDPHE) or aquatic-life criteria from the U.S. Environmental Protection Agency (EPA). There is at least 1 CDPHE standard or EPA criterion for 30 of the 43 water-quality parameters. For all samples from both the AGFC and the PCMS in WYs 2016–18, the concentrations of most water-quality parameters were compliant with the associated standards or criteria. However, there were some exceedances of standards or criteria: 11 samples exceeded the CDPHE recreational class standard for Escherichia coli concentration, 9 samples exceeded the CDPHE chronic unfiltered phosphorus aquatic-life standard, 36 samples exceeded the CDPHE chronic sulfate aquatic-life standard, 5 samples exceeded the EPA criterion for selenium, 7 samples exceeded the EPA criterion for aluminum, 2 samples exceeded the CDPHE chronic standard for iron, and 15 samples exceeded the CDPHE chronic standard for manganese. Identifying potential effects of military training on water quality in adjacent streams on the AGFC and PCMS is difficult due to the ephemeral nature of streamflow, limited number of sampling locations and samples, and limited access to the study areas. At the PCMS, pairs of water-quality samples were collected in March and May 2017 before and after an April–May 2017 military training event. At the Purgatoire Rock Crossing site, streamflow at the time of the May sample was approximately 35 times larger than streamflow for the March sample. The absolute percent differences of concentrations for 27 parameters ranged from −71.7 to 183 percent, and 7 parameters had increases in concentration whereas 22 parameters had no change or decreases in concentrations. The absolute percent differences of loads for 24 parameters ranged from 141 to 198 percent. The generally lower concentrations and higher loads were expected given the higher streamflows at the time of collection of the May compared to the March samples.

Colorado↗