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Factors affecting the distribution of water-bearing fractures in the bedrock aquifers of West Virginia

Bedrock aquifers cover 23,601 square miles within the State of West Virginia and comprise 97.4 percent of the surficial area within the State; the remaining 2.6 percent (621 square miles) consists of alluvial sand-and-gravel and glacial outwash aquifers bordering the State’s major rivers. While West Virginia’s alluvial aquifers have been studied extensively, bedrock aquifers have only been characterized for studies completed in a few areas in Jefferson, McDowell, and Monroe Counties. Bedrock aquifers are water supplies for public supply, agriculture, industry, and residential homeowner use. In this study, the U.S. Geological Survey, in cooperation with the West Virginia Department of Environmental Protection Division of Water and Waste Management, provides a statewide assessment of the occurrence and distribution of fractures within bedrock aquifers of the State and the various topographic, physiographic, and lithologic influences controlling the occurrence and distribution of bedrock fractures. The results of this study provide an increased understanding of the distribution of fractures in bedrock aquifers in West Virginia and help to verify trends that have been suspected for many years but were never well documented or verified by data. The results confirmed that the density of fractures and those that were determined to be water bearing decrease significantly with depth. A statistically significant difference in the density of fractures was observed at a depth of 215 feet for wells in the Appalachian Plateaus Physiographic Province’s and in the Valley and Ridge Physiographic Province’s aquifers; a higher density of fractures and water-bearing fractures were above a depth of 215 feet than below that depth. This is an important consideration when drilling wells for residential, commercial, industrial, or agricultural water supply. Abandoned underground coal mines are commonly believed to form large pools of water in the interconnected mine entries in abandoned room and pillar coal mines. Such pools of water can and do exist in abandoned underground coal mines, but many mines lack open entries and are held up by overburden strata and pillars that can collapse and form aquifers comprised of vast interconnected rubble zones (gob), especially in older mines. Data assessed for this study showed that shale-corrected values of effective porosity for limestone aquifers in West Virginia had a median value of 2 percent and an average value of 4 percent and generally are mineralized with low effective porosity. Argillaceous or sandy limestone has a median shale-corrected porosity of 4 percent and an average shale-corrected porosity of 5 percent. The median and average shale-corrected porosity of sandstone aquifers was estimated to be 14 percent, but the median shale-corrected porosity for argillaceous or calcareous sandstone was 5 percent and the average shale-corrected porosity for argillaceous or calcareous sandstone was 6 percent. Even though shale has a relatively high total sonic porosity compared to other lithologies, shale and siltstone had relatively low shale-corrected porosity, ranging from 0 to 2 percent. Well yields were previously documented to be highest in valley settings, lowest on hilltops, and intermediate on hillsides. Transmissivity data provided by this study confirm this general pattern within the Appalachian Plateaus Province; however, the Valley and Ridge Province does not follow this pattern. While still lowest on hilltop settings, the highest well yields were in hillside settings. The trend for the Valley and Ridge Province was likely skewed because of 9 high-yield wells specifically targeting deeper thin limestone units, such as the Tonoloway and Helderberg Limestones, at depths with transmissivity in excess of 2,000 feet squared per day in Mineral County, West Virginia, or targeting karst aquifers in Berkeley, Jefferson, or Greenbrier Counties, West Virginia. Finally, water-bearing fractures have been hypothesized to comprise a small number of all fractures within a typical bedrock well in West Virginia. Data collected for this study support this theory. A total of 3,403 fractures were identified during this study; 3,151 (92.6 percent) of those fractures are low-transmissive, and only 252 (7.4 percent) fractures are water-bearing. Even though a well may contain many fractures, less than 8 percent are considered water-bearing fractures.

West Virginia

Suspended-sediment characteristics in the Housatonic River Basin, western Massachusetts and parts of eastern New York and northwestern Connecticut, 1994-96

Suspended-sediment concentrations, discharges, loads, and yields were determined for eight subbasins in the Housatonic River Basin in western Massachusetts, eastern New York, and northwestern Connecticut from April 1994 through March 1996. Suspended-sediment samples were collected at three continuous-record sediment stations and at four partial-record sediment stations. Suspended-sediment concentrations in samples collected during the period of study ranged from less than 0.5 to 3,400 milligrams per liter, and concurrent streamflows ranged from 0.03 to 126 cubic feet per second per square mile at the seven stations. Median suspended-sediment concentrations in samples collected at each station ranged from 7 to 61 milligrams per liter. Median streamflows during suspended-sediment sampling ranged from 1.86 to 5.88 cubic feet per second per square mile. Instantaneous suspended-sediment yields ranged from less than 0.005 to 185 tons per day per square mile, and medians ranged from 0.03 to 1.12 tons per day per square mile at the seven stations. Total suspended-sediment loads (mass) from April 1994 through March 1996 at the continuous-record sediment stations were 11,603 tons at Housatonic River near Great Barrington, 7,929 tons at Green River, and 54,347 tons at Housatonic River near Ashley Falls. Suspended-sediment load during January 1996 at the Green River station accounted for about 54 percent of the total suspended-sediment load for the Green River during the 2-year study. Suspended-sediment load on January 19 and 20, 1996, at the Green River station accounted for about 50 percent of the January 1996 suspended-sediment load, or about 27 percent of the total suspended-sediment load during the 2-year study. This large suspended-sediment transport was the result of rainfall and snowmelt on January 19 and 20, 1996--the equivalent of a 5- to 6-inch rain storm in the Green River subbasin. Total suspended-sediment loads during the 2-year study at the partial-record sediment stations were 3,052 tons at Williams River, 1,758 tons at Ironworks Brook, and 17,927 tons at Konkapot River. Suspended-sediment yields from April 1994 through March 1996 at the continuous-record sediment stations were 21 (tons/yr)/mi 2 at Housatonic River near Great Barrington, 78 (tons/yr)/mi 2 at Green River, and 58 (tons/yr)/mi 2 at Housatonic River near Ashley Falls. Suspended-sediment yields during the 2- year study at the partial-record sediment stations were 35 (tons/yr)/mi 2 at Williams River, 78 (tons/yr)/mi 2 at Ironworks Brook, and 147 (tons/yr)/mi 2 at Konkapot River. Suspended-sediment yields were estimated for two subbasins in the Housatonic River Basin--Schenob Brook at Sheffield, a partial-record sediment station, and the area adjacent to the Housatonic River between Great Barrington and Ashley Falls. The estimate of suspended-sediment yield at Schenob Brook at Sheffield of 82 (tons/yr)/mi 2 is comparable to the yield determined for the Green River and Ironworks Brook. The estimate of suspended-sediment yield for the area adjacent to the Housatonic River between Great Barrington and Ashley Falls was 395 (tons/yr)/mi 2 . This estimated suspended-sediment yield was 2.7 to 18.8 times greater than that estimated for any of the other subbasins. Several basin and land-use characteristics thought to affect suspended-sediment transport in the subbasins were compared to the suspended-sediment yields. The characteristics that seemed to affect suspended-sediment discharge were dams, which contributes to decreased yields; Hadley, Limerick, Linlithgo, Saco, and Winooski silt loam soils (high erodibility soils), which contributes to increased yields; stratified-drift deposits, which contributes to increased yields; and agricultural and open land, which contributes to increased yields. The effect of stratified-drift deposits on suspended-sediment discharge is thought to be greater when those deposits are of glaciolacustrine (generally clay, silt, and fine sand), rather than glaciofluvial (clay, silt, sand, gravel, and cobbles) origin. The silt loam soils, glaciolacustrine deposits, and agricultural and open land are interrelated, inasmuch as the silt loam soils generally are associated with glaciolacustrine deposits and agricultural activities.

Connecticut, Massachusetts, New York

Lithium brine potential of North Dakota: Results from the 2025 sampling program

Lithium (Li), classified as a critical mineral and key in energy storage applications because of its high energy density, faces unprecedented demand. This has driven interest in unconventional sources of Li, especially brines from sedimentary basins. Accordingly, the spatial distribution of basinal brinehosted Li resources across North America is becoming better defined, including the Williston Basin underlying Saskatchewan, Canada. This has led to growing investment and exploration by industry throughout the 2020s; however, despite this interest, the Li potential of basinal brines of the Williston Basin in North Dakota remain underexplored. This work presents the results from the 2025 joint brine sampling campaign between the North Dakota Geological Survey, the United States Geological Survey (USGS), and The University of Texas at Austin. Twenty-seven fluid samples were collected from producing oil and water source wells from eight stratigraphic intervals across western North Dakota and analyzed for major cation and anion concentrations. Similar to southeastern Saskatchewan, the highest Li concentrations were identified in the Devonian Duperow Formation, with concentrations up to 179 mg/L being observed in a well commingled between the Duperow and Red River Formations. Some samples from the overlying Birdbear Formation exceeded 75 mg/L, whereas Li concentrations were lower in the Madison Group (33-44 mg/L) and the Three Forks (50 mg/L), Dawson Bay (43 mg/L), Winnipegosis (23 mg/L), and Red River (40.0 mg/L) Formations. This work indicates Li resource potential exists across the Williston Basin and advances our understanding of the Li distribution in basinal brines which could provide a new domestic source of this critical mineral.

North Dakota

Colored shaded relief bathymetry and acoustic backscatter of Ozette Lake, Washington

Offshore of the Pacific Northwest of the United States is the Cascadia Subduction Zone, a 1,000-kilometer-long tectonic boundary defined by a large fault, called a megathrust, that extends from the Mendocino Junction off northern California to the Nootka Fracture Zone off Vancouver Island, Canada (U.S. Geological Survey, 2023). The Juan de Fuca and Gorda oceanic plates to the west of this boundary subduct under the North America continental plate to the east. Several other smaller faults that cut through the North America plate crust also affect the region. Although their effects upon Ozette Lake are uncertain, geological evidence for past earthquakes, such as underwater landslides, may be found in Pacific Northwest lakes. Underwater landslides caused by past earthquakes should be well preserved in these relatively undisturbed lake environments. The floor of Ozette Lake, Washington, located along the Pacific coast of the United States, west of the Puget Sound region and about 140 kilometers east of the megathrust was mapped by the U.S. Geological Survey in July of 2019 to search for evidence of past earthquakes. Mapping was completed using a SWATHplus-M 234-kHz interferometric side scan sonar system pole-mounted on the U.S. Geological Survey research vessel San Lorenzo. The system collected full-coverage bathymetric and acoustic backscatter data that were processed to 2-meter spatial resolution (Dartnell and others, 2024). This two-map series displays the results of this mapping. A colored shaded relief bathymetry map (sheet 1) and an acoustic backscatter map (sheet 2) show the lake floor morphology and backscatter intensities, respectively, that can be analyzed for evidence of past earthquakes.

Washington

Geologic map of pre-Middle Jurassic basement rocks beneath the Atlantic and Gulf Coastal Plains in Florida

Much of the southeastern United States, including all of Florida, is covered by flat-lying sedimentary strata of the Atlantic and Gulf Coastal Plains which have accumulated since Middle Jurassic time. The pre-Middle Jurassic rocks that underlie these coastal plains in Florida, here collectively referred to as “basement,” are known only from a relatively small number of boreholes. This scientific investigations map presents an interpretation of the basement geology in a 1:1,000,000-scale subsurface geologic map with supporting text, data, and figures. The subsurface mapping methodology integrates petrographic, geochronological, thermochronological, geochemical, and mineralogical analyses of drill cores and cuttings in the context of regional geophysical data. The pre-Middle Jurassic rocks of Florida consist of the Gondwanan (West African) Suwannee terrane which was accreted to Laurentia during the Alleghanian orogeny and subsequently intruded by Permian granites, superposed by early Mesozoic rift basins, and partially overlain by bimodal Jurassic volcanic rocks. The younger basement components, specifically the Southwest Florida volcanic province, North Florida tholeiites, early Mesozoic rift basins, and Alleghanian granitoids, have correlative and contemporaneous units throughout the Appalachian orogen. In contrast, Florida’s older basement rocks, including Paleozoic siliciclastic strata of the Suwannee basin, North Florida volcanic series, Osceola and Gaskin intrusive complexes, and the St. Lucie Metamorphic Complex, have neither surface exposures nor unequivocal correlates. Major structures include early Mesozoic normal faults and northwest-striking transfer zones such as the Jay fault. Many of these faults define the boundaries of subbasins within the South Georgia rift system. Top-of-basement structure contours show gentle arches and embayments that are also recognized in overlying coastal plain strata.

Florida

Design and function of the Autonomous Benthic Imaging and Surveying System (ABISS) for remote sensing of lake and seabed environments

Lake and seabed environments are home to fisheries and other biota that are important to ecosystems and economies, yet these environments and the species that use them are difficult to accurately assess and monitor. Traditional benthic survey techniques, like bottom trawling used by the U.S. Geological Survey, are limited by substrate constraints, poor spatial resolution and precision, and operational depth limits, hindering accurate assessment of benthic species and habitats. In response to these limitations, the U.S. Geological Survey developed the Autonomous Benthic Imaging and Surveying System, a camera system integrated into underwater vehicles, to capture high-resolution images of the lakebed. The system uses color and stereo cameras to collect imagery, which can be analyzed using computational methods to detect organisms and (or) characterize habitat features, such as geologic substrate types. The system has been integrated into autonomous underwater vehicles and into an underwater housing used by self-contained underwater breathing apparatus (SCUBA) divers. Although the engineering of the system was motivated by the need for data collection in the Great Lakes, it has potential to collect high quality data in any aqueous setting with sufficient water clarity and safe operating conditions. The Autonomous Benthic Imaging and Surveying System can operate across diverse depths and light conditions to map and quantify ecological patterns that were difficult or impossible to assess using traditional methods. The Autonomous Benthic Imaging and Surveying System offers the potential for accurate and precise monitoring and assessment of native benthic biota, invasive species, and habitat, potentially providing natural resource managers with improved information to support decision making about benthic resource management.

Great Lakes

Assessment of the hydraulic connection between ground water and the Peace River, west-central Florida

The hydraulic connection between the Peace River and the underlying aquifers along the length of the Peace River from Bartow to Arcadia was assessed to evaluate flow exchanges between these hydrologic systems. Methods included an evaluation of hydrologic and geologic records and seismic-reflection profiles, seepage investigations, and thermal infrared imagery interpretation. Along the upper Peace River, a progressive long-term decline in streamflow has occurred since 1931 due to a lowering of the potentiometric surface of the Upper Floridan aquifer by as much as 60 feet because of intensive ground-water withdrawals for phosphate mining and agriculture. Another effect from lowering the potentiometric surface has been the cessation of flow at several springs located near and within the Peace River channel, including Kissengen Spring, that once averaged a flow of about 19 million gallons a day. The lowering of ground-water head resulted in flow reversals at locations where streamflow enters sinkholes along the streambed and floodplain. Hydrogeologic conditions along the Peace River vary from Bartow to Arcadia. Three distinctive hydrogeologic areas along the Peace River were delineated: (1) the upper Peace River near Bartow, where ground-water recharge occurs; (2) the middle Peace River near Bowling Green, where reversals of hydraulic gradients occur; and (3) the lower Peace River near Arcadia, where ground-water discharge occurs. Seismic-reflection data were used to identify geologic features that could serve as potential conduits for surface-water and ground-water exchange. Depending on the hydrologic regime, this exchange could be recharge of surface water into the aquifer system or discharge of ground water into the stream channel. Geologic features that would provide pathways for water movement were identified in the seismic record; they varied from buried irregular surfaces to large-scale subsidence flexures and vertical fractures or enlarged solution conduits. Generally, the upper Peace River is characterized by a shallow, buried irregular top of rock, numerous observed sinkholes, and subsidence depressions. The downward head gradient provides potential for the Peace River to lose water to the ground-water system. Along the middle Peace River area, head gradients alternate between downward and upward, creating both recharging and discharging ground-water conditions. Seismic records show that buried, laterally continuous reflectors in the lower Peace River pinch out in the middle Peace River streambed. Small springs have been observed along the streambed where these units pinch out. This area corresponds to the region where highest ground-water seepage volumes were measured during this study. Further south, along the lower Peace River, upward head gradients provide conditions for ground-water discharge into the Peace River. Generally, confinement between the surficial aquifer and the confined ground-water systems in this area is better than to the north. However, localized avenues for surface-water and ground-water interactions may exist along discontinuities observed in seismic reflectors associated with large-scale flexures or subsidence features. Ground-water seepage gains or losses along the Peace River were quantified by making three seepage runs during periods of: (1) low base flow, (2) high base flow, and (3) high flow. Low and high base-flow seepage runs were performed along a 74-mile length of the Peace River, between Bartow and Nocatee. Maximum losses of 17.3 cubic feet per second (11.2 million gallons per day) were measured along a 3.2-mile reach of the upper Peace River. The high-flow seepage run was conducted to quantify losses in the Peace River channel and floodplain between Bartow and Fort Meade. Seepage losses calculated during high-flow along a 7.2-mile reach of the Peace River, from the Clear Springs Mine bridge to the Mobil Mine bridge, were approximately 10 percent of the river flow, or 118 cubic feet per second. Calculated seepages along the Peace River in Hardee and De Soto Counties were inconclusive, because most seepages were within the range of discharge measurement error. Two continuous aerial thermal infrared imagery surveys were conducted to locate sites of ground-water discharge along the Peace River. Although temperature and hydrologic conditions were ideal to observe spring flow using thermal infrared imaging techniques, no sources of ground-water discharge were identified using this method. Diffuse ground-water seepage may, however, provide significant ground-water discharge.

Florida

Altitude of the potentiometric surface and depth to water in the Mississippi River Valley alluvial aquifer, spring 2024

Potentiometric-surface and depth-to-water maps for spring 2024 were created for the Mississippi River Valley alluvial aquifer using groundwater-altitude data from 1,151 wells completed in the Mississippi River Valley alluvial aquifer and from the altitude of the top of the water surface in area rivers from 160 U.S. Geological Survey and U.S. Army Corps of Engineers streamgages. The potentiometric-surface and depth-to-water maps for 2024 were created to support investigations to characterize the Mississippi River Valley alluvial aquifer as part of the U.S. Geological Survey Water Availability and Use Science Program. Sufficient data were available to map the potentiometric surface and depth to water of the Mississippi River Valley alluvial aquifer for spring 2024 for about 83 percent of the aquifer area. The potentiometric contours ranged from 0 to 330 feet (ft) above the North American Vertical Datum of 1988. The regional direction of the groundwater gradient was generally to the south-southwest, except in areas of groundwater-altitude depressions, where the groundwater gradient direction was into the depression, and near rivers, where the groundwater gradient direction was either from the aquifer to the river or from the river into the aquifer. Groundwater depressions in the potentiometric-surface map are in the lower one-half of the Cache region and in most of the Grand Prairie and Delta regions. Depth to water by well in the Mississippi River Valley alluvial aquifer in spring 2024 ranged from 0.27 ft above land surface to 145.65 ft below land surface.

Arkansas, Illinois, Kentucky, Louisiana, Mississip

Color-Shaded Relief Bathymetry of Lake Chelan, Washington

In 2023, the U.S. Geological Survey (USGS) completed a 3-week field operation in Lake Chelan, Washington, the third deepest lake in the conterminous United States, to acquire sediment cores, high-resolution bathymetry data, and chirp sub-bottom profiles. The high-resolution bathymetry displayed in this map publication was collected using a Norbit Winghead i67-curved array multibeam system; raw data were cleaned and gridded (3 by 3 meters [m]) in the Teledyne CARIS software. In some locations where the slopes of Lake Chelan are near-vertical, multibeam returns were sparse, resulting in artifacts resembling holes that appear as grey dots within the color-shaded bathymetric relief. Although the 2023 bathymetric mapping of Lake Chelan resulted in similar morphometric characteristics to previous hydrographic campaigns (table 1; Kendra and Singleton, 1987; Pelletier and others, 1989), these new data provide a much more detailed understanding of the two physiographic basins that comprise Lake Chelan: the deeper (as deep as 445.8 m [fig. 1]; previously reported as 453 m) and narrower (1–2 kilometers [km] wide) Lucerne Basin to the north, and the shallower (as deep as 127.8 m [fig. 1]), and wider (2–3 km wide) Wapato Basin to the south. With this detailed imaging of Lake Chelan, we find pervasive morphological evidence of slope failure and mass-transport deposits (MTDs) in at least 89 locations within the lake and 63 subaqueous deltas (fig. 2). The deeper Lucerne Basin is dominated by steep slopes and numerous subaqueous deltas fed by steep fluvial catchments, whereas the Wapato Basin contains numerous landslide scarps, scars, and debris aprons along the more gently sloping lake margins, and abundant relict kettle structures from the Pleistocene deglaciation. Lake Chelan’s geomorphic, geophysical, and sediment data contain important records of glacial retreat and advance, regional volcanic eruptions, and earthquakes that generate ground motions severe enough to induce landslides recorded in the sediment as MTDs. The epicenter of the 1872 Washington State Earthquake (M 6.5–7.2; Bakun and others, 2002; Brocher and others, 2017; Sherrod and others, 2021) is along the Spencer Canyon Fault, near the southern end of Lake Chelan. Shaking from this earthquake was strong enough to affect local aquifers, induce liquefaction of unconsolidated sediments, produce large seiches (Brocher and others, 2018), and likely cause landslides within Lake Chelan.

Washington

Geologic framework and hydrostratigraphy of the Edwards and Trinity aquifers within parts of Bandera and Kendall Counties, Texas

The karstic Edwards and Trinity aquifers are classified as major sources of water in south-central Texas by the Texas Water Development Board. During 2019–23 the U.S. Geological Survey, in cooperation with the Edwards Aquifer Authority, mapped and described the geology and hydrostratigraphy of the rocks composing the Edwards and Trinity aquifers within parts of Bandera and Kendall Counties from field observations of the surficial expressions of the rocks. The thicknesses of the mapped lithostratigraphic and hydrostratigraphic units were also estimated from field observations in the study area. The Cretaceous rocks in the study area are part of the Trinity Group and Edwards Group. The groups, formations, and members are composed primarily of layers of marls, shales, and limestones. The limestones are composed of mudstone through grainstone, framestone and boundstone, dolomite, and argillaceous and evaporitic rocks. The principal structural feature in the study area is the Balcones fault zone. The Balcones fault zone is the result of late Oligocene and early Miocene extensional faulting and fracturing that was a result of the eastern Edwards Plateau uplift. In the Balcones fault zone, most of the faults in the study area are high-angle to vertical, en echelon, normal faults that are predominantly downthrown to the southeast. Hydrostratigraphically, the rocks exposed in the study area are those that contain the Edwards aquifer, the upper zone of the Trinity aquifer, and the middle zone of the Trinity aquifer. Descriptions of the hydrostratigraphic units, thicknesses, hydrologic function, porosity types, and field identification and observations are provided, including those for the informal Bandera and Love Creek hydrostratigraphic units of the Edwards aquifer, which were identified through the mapping for this study.

Texas

Cross section N–N' through the Valley and Ridge province of the southern Appalachian basin, from Greene County, west-central Alabama, to Bibb County, central Alabama

Introduction Geologic cross section N–N′ is the sixth in a series of geologic cross sections constructed by the U.S. Geological Survey to document and improve understanding of the geologic framework and petroleum systems of the Appalachian basin. Cross section N–N′ provides a regional view of the structural and stratigraphic framework of the Appalachian basin in the Valley and Ridge province in western and central Alabama; it spans approximately 69 miles (mi) (111 kilometers [km]). This geologic cross section is a companion to geologic cross sections E–E′ , D–D′ , C–C′ , I–I′ , and A–A′ that are located approximately 350 to 550 mi (563 to 885 km) to the northeast. Cross section N–N' complements earlier geologic cross sections through the Alabama part of the Appalachian basin. Although some of the other cross sections show more structural and stratigraphic detail, they are of more limited extent geographically and stratigraphically. Cross section N–N′ contains information that is useful for evaluating energy resources in the Appalachian basin. Although the Appalachian basin petroleum systems are not shown on the cross section, many of their key elements (such as source rocks, reservoir rocks, seals, and traps) can be inferred from lithologic units, unconformities, and geologic structures shown on the cross section. Other aspects of petroleum systems (such as the timing of petroleum generation and petroleum migration pathways) may be evaluated by burial history, thermal history, and fluid flow models based on what is shown on the cross section. In addition, cross section N–N′ may be used as a reconnaissance tool to identify plausible geologic structures and strata for the subsurface storage of liquid waste or for the sequestration of carbon dioxide.

Alabama

Case definitions for wildlife diseases

Welcome to the first manual of “Case Definitions for Wildlife Diseases,” a “living” electronic publication. The plan is to add and update this manual’s case definitions periodically as warranted; thus, this manual will never be completed, and readers should download the latest versions of specific chapters (that is, definitions) when available. Constructive suggestions from readers are welcome and will help guide adjustments as this project progresses. The purpose of this manual is to provide case definitions for selected diseases of importance to wildlife in Canada and the United States. Case definitions provide standard sets of criteria for classifying the degree of certainty of a particular diagnosis and help improve surveillance data quality and comparability. Better data and standardization allow for improved data sharing, which increases geographic and species surveillance coverage and permits more robust analyses. The definitions included in this manual have been developed by veterinary pathologists, epidemiologists, and wildlife biologists primarily from the U.S. Geological Survey National Wildlife Health Center (NWHC) and Canadian Wildlife Health Cooperative (CWHC). Pathologists from each organization reviewed and finalized the definitions. Each case definition has been peer reviewed by two scientific experts before publication. This manual begins with the case definition template. This generic template includes four sections: “Individual, Place, and Time Criteria for Diagnosis and Testing,” “Field Criteria for Diagnosis,” “Laboratory Criteria for Diagnosis,” and “Epidemiological Linkage Criteria for Diagnosis” and can be used to guide development of new case definitions. Information in each section is then combined to provide an overall case classification. Disease diagnoses are classified as “Confirmed,” “Presumptive,” or “Suspected;” and evidence of a pathogen or toxin is classified as “Exposed” or “Present/Detected.” Each subsequent chapter is then a case definition for a specific disease of wildlife, and infectious and non-infectious diseases are included.

Techniques and Methods

High-resolution magnetic survey using an unoccupied aerial vehicle to constrain buried lava flow geometry, volume, and eruptive history of Little Cones, Crater Flat, Nevada

Magnetic surveys are an important tool used to augment geologic mapping in distributed volcanic fields. Using magnetic anomalies, it is possible to model the geometry of shallowly buried volcanic features, such as conduits, sills, and lava flows. This subsurface mapping is important for understanding eruption dynamics and emplacement of lava flows, and it sometimes reveals buried volcanoes no longer visible at the surface. These data are critical to better interpret the numbers, styles, and magnitudes of eruptions in distributed volcanic fields and their associated volcanic hazards. New advances in unoccupied aerial vehicles (UAVs) offer an attractive middle range of resolution and aerial coverage between ground-based magnetic surveys and aeromagnetic surveys. Here, we present the results of a UAV fluxgate magnetic survey of the Little Cones, Nevada, scoria cones, which have been the target of previous ground and aeromagnetic surveys. The magnetic anomalies at Little Cones are of interest because the surrounding alluvium conceals lava flows that erupted from Little Cones, making it very difficult to understand the volume and morphology of lava flows from geologic mapping alone. Nonlinear inversion of UAV-collected magnetic data were used to model the thickness and morphology of buried Little Cones’ lava flows with higher precision than achieved previously. The sequence of events and calculated flow characteristics are then interpreted. The total volume of Little Cones, including concealed lava flows, is approximately 0.016 cubic kilometer, and the initial sheet flow erupted in less than 24 hours. The findings presented herein demonstrate that UAV-based magnetic surveys are a reliable method of data collection and an efficient alternative to other survey methods, facilitating development of a three-dimensional perspective of distributed volcanic fields.

Nevada

The 1912 Ms 7.2 earthquake in the Denali region of central Alaska

The 2002 M w 7.9 earthquake in central Alaska ruptured 340 km on three faults—Susitna Glacier thrust fault, Denali fault, Totschunda fault—crossing both the Richardson Highway and the Alaska Pipeline. Its occurrence prompted renewed interest in historical large earthquakes that possibly originated on the Denali fault. One of these earthquakes was a M s 7.2 event on July 7, 1912, which we revisit with two approaches: (1) probabilistic relocation of the epicenter using globally recorded arrival times, and (2) compilation and reassessment of shaking intensity reports to estimate a macroseismic epicenter. Our preferred instrumental epicenter is west of the Parks Highway and in agreement with the maximum‐reported shaking, which was from the Parker–Browne expedition of Denali. We also relocated a M s 6.4 aftershock, whose epicenter is 11 km from the mainshock. Candidate faults for the 1912 earthquake include the Denali fault, the McLeod Creek thrust fault, and the Kantishna Hills thrust fault. Future analysis of active faults, paleoseismic results, 1912 instrumental data, and 1912 felt reports may help in interpreting the fault and mechanism of the 1912 earthquake.

Alaska

Map of topographic lineaments interpreted as recent surface ruptures along the Bennett Valley and Southern Maacama Fault Zones, Sonoma County, California

This study documents lidar-illuminated topographic lineaments interpreted as evidence of recent surface fault ruptures and surface ruptures related to distributed deformation along the Bennett Valley Fault Zone and the southernmost Maacama Fault Zone in the northern San Francisco Bay area (fig. 1, on map sheet). Together, these fault zones form a structural connection across a right stepover between the main Maacama Fault Zone and the Rodgers Creek Fault, overlapping principal strands of the San Andreas plate boundary system north of San Francisco Bay (figs. 1, 2, on map sheet) that accommodate about a quarter of the ~40 millimeters per year of regional dextral tectonic slip (Parsons and others, 2013). Although much of the Bennett Valley Fault Zone is seismically active (McLaughlin and others, 2012; Sowers and others, 2010), only the north end of the fault zone (the “Spring Valley strand,” indicated on southern map panel of map sheet and labeled “D” in figure 2, on map sheet) was previously known to have youthful geomorphic expression and to displace Holocene deposits (McLaughlin and others, 2008; Sowers and others, 2010; Sowers and others, 2016). Holocene activity along the length of the Bennett Valley Fault Zone and southernmost Maacama Fault Zone, with possible implications for rupture propagation, continuity, and slip transfer, had not been identified. However, fault splays that project eastward from the Rodgers Creek Fault have been mapped and hypothesized to accommodate slip transfer to the Bennett Valley Fault Zone (Hecker and Randolph Loar, 2018). The generally subtle and distributed nature of surface-rupture evidence along the Bennett Valley and southernmost Maacama Fault Zones, and extensive vegetation cover, had left recent faulting previously unmapped along most of the zone. The map presented here represents a new compilation of inferred surface-rupture features detected using high-resolution topographic lidar data from an airborne lidar survey of Sonoma County, California (OpenTopography, 2014). These data, which enable subtle topographic features to be discerned, indicate that recent (likely Holocene) surface ruptures extend throughout the Bennett Valley and southernmost Maacama Fault Zones. The rupture-lineament map was created using a GIS (geographic information system) framework and is included herein as an image map at a scale of 1:36,000 and as digital datasets (included as supplemental information to this report). The mapping is intended to lay the groundwork for future studies designed to better characterize how plate-boundary slip is accommodated on this important and complex system of faults.

California

Modeling seawater intrusion along the Alabama coastline using physical and machine learning models to evaluate the effects of multiscale natural and anthropogenic stresses

Seawater intrusion threatens groundwater resources in coastal regions, including southern Baldwin County, Alabama, where the freshwater-saltwater interface dynamics remain poorly understood. To address this gap, this study uses combined physics-based and machine-learning models to quantify seawater intrusion caused by natural (storm surges) and anthropogenic (human activities) perturbations. The long short-term memory network and wavelet analysis were used to assess vertical aquifer vulnerabilities, revealing that the shallow part of the Coastal lowlands aquifer system (CL1) in the southern Baldwin County region is more susceptible to sea level rise and groundwater extraction than deeper aquifers. Based on these findings, a cross-sectional numerical model (physics approach) for the CL1 aquifer was developed to evaluate tidal and storm surge effects, using Tropical Storm Claudette (June 2021) as a case study. Results showed that tidal fluctuations had a minimal impact on the saltwater-freshwater interface location, whereas storm surges caused substantial inland movement, with effects lasting for nine months. The steady-state version of the three-dimensional (3D) physical model predicted seawater intrusion across the entire area, and convolutional neural network-based modeling further validated the model results. The 3D physical model was also applied to a smaller area to assess human impact on the saltwater interface due to two groundwater pumping scenarios (± 50% of the baseline pumping rate). Results revealed that a 50% increase in groundwater withdrawals caused seawater to advance ~ 320 m inland, whereas a 50% reduction led to a ~ 270-meter retreat. This study highlights the vulnerability of Alabama’s shallow coastal aquifers to seawater intrusion due to storm surges and human activities, and demonstrates that combining physics-based models with machine learning approaches can improve groundwater predictions, though its accuracy depends on the availability of site-specific data.

Alabama

The 3D Elevation Program—Supporting the economy of Massachusetts

Introduction Massachusetts extends from the mountains of the Appalachian system in the west of the State to the sandy beaches and rocky shorelines of the Atlantic coast in the east. Inland topographic data support a wide range of important activities, including geologic mapping, transportation planning, forest and wildlife management, quantifying ecological services, water supply protection, commonwealth-wide infrastructure planning, local site planning, and flood-plain management. Nearshore bathymetry can be used to support coastal portions of the Commonwealth by addressing the combined threats of ocean warming, strong storm surge, and rising sea levels. The maintenance and (or) expansion of Massachusetts ports (for instance, Boston, New Bedford) and Cape Cod sediment management depends upon the accurate mapping of bathymetry and the frequent influx of sediment and redeposition. Critical applications that address the broad range of requirements depend on light detection and ranging (lidar) data that provide a highly detailed three-dimensional (3D) model of the Earth’s surface and aboveground features. The 3D Elevation Program (3DEP) is managed by the U.S. Geological Survey (USGS) in partnership with Federal, State, Tribal, U.S. territorial, and local agencies to acquire consistent lidar coverage at quality level 2 or better to meet the many needs of the Nation and Massachusetts. The status of available and in-progress 3DEP baseline lidar data in Massachusetts is shown in figure 1. 3DEP baseline lidar data include quality level 2 or better, 1-meter or better digital elevation models, and lidar point clouds, and must meet the Lidar Base Specification version 1.2 ( https://www.usgs.gov/3dep/lidarspec ) or newer requirements. The National Enhanced Elevation Assessment identified user requirements and conservatively estimated that availability of lidar data would result in at least $1.23 million in new benefits annually to Massachusetts. The top 10 Massachusetts business uses for 3D elevation data, which are based on the estimated annual conservative benefits of 3DEP, are shown in table 2.

Massachusetts

Recent scientific contributions by the U.S. Geological Survey in the San Francisco Bay and Sacramento–San Joaquin Delta Estuary

Introduction The San Francisco Bay and Sacramento–San Joaquin Delta Estuary (hereafter, Bay-Delta) is the largest estuary on the West Coast of the United States. The Bay-Delta covers more than 1,600 square miles and drains a watershed of more than 75,000 square miles, which is greater than 40 percent of California. The region surrounding the Bay-Delta is home to about 10 million people, and its habitats (fig. 1) support more than 800 plant and animal species. The waterways of the Bay-Delta are the central hub of California’s extensive freshwater delivery system, supplying water to more than 27 million Californians and 4 million acres of farmland in the Central Valley. The U.S. Geological Survey (USGS) is the primary science agency of the U.S. Department of the Interior, providing a broad range of Earth, water, biological, and mapping data and expertise to inform natural resource management across the country. This fact sheet focuses on research conducted by the USGS in the Bay-Delta region, mostly within the past 5 years. The fact sheet is organized across five major themes: water flow and water quality, fish and wildlife, wetland restoration, invasive species, and hazards. In each of these areas, the USGS works closely with Federal, State, and local agencies; academia; and non-governmental organizations to provide objective, evidence-based science. The data and knowledge gained from USGS research and monitoring are publicly available and are routinely used by agencies, including the U.S. Bureau of Reclamation, U.S. Army Corps of Engineers, U.S. Fish and Wildlife Service, California Department of Water Resources, California Department of Fish and Wildlife, California State Water Resources Control Board, Delta Stewardship Council, and many additional organizations and stakeholders to inform management of the Bay-Delta region and its resources.

California