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Structural evolution of iron coordination in proteins across Earth’s oxygenation history

Protein metal-binding sites support essential biological functions shaped by protein fold, subunit interactions, and cofactor chemistry. Because these sites encode both biochemical function and environmental constraint, they offer a route to connect protein evolution with changes in Earth’s surface environment through time. Of particular interest is iron (Fe), the most widely used metal in biology and a cofactor central to both anaerobic and aerobic metabolism. Here, we systematically compare the immediate chemical environments of functionally essential Fe-binding sites in three-dimensional protein structures to test whether Fe coordination spheres differ across oxygen contexts. Using a curated dataset of experimentally determined structures, we identify a clear shift in the local chemistry of Fe-binding environments from anaerobic to aerobic proteins. Aerobic Fe sites are significantly more hydrophilic than anaerobic ones, and amino-acid composition analyses show reduced cysteine use in aerobic Fe-binding neighborhoods. These patterns suggest that as Earth’s surface environments became more oxygenated, proteins retained Fe as a core redox metal while reconfiguring local coordination chemistry in ways less vulnerable to oxidative damage. More broadly, this study introduces and applies the Coordination Sphere Analysis and Comparison (CSAC) workflow, an open and archived Python workflow for extracting local metal-binding environments from structure datasets, providing a framework for linking metalloprotein structure to evolutionary and geobiological transitions across Earth history.

Discover Life

System characterization report on the Earth Surface Mineral Dust Source Investigation (EMIT) sensor

Executive Summary This report addresses system characterization of the Earth Surface Mineral Dust Source Investigation (EMIT) sensor, an imaging spectrometer developed by the National Aeronautics and Space Administration. This report is part of a series of system characterization reports produced and delivered by the U.S. Geological Survey Earth Resources Observation and Science Cal/Val Center of Excellence. These reports present and detail the methodology and procedures for characterization; present technical and operational information about the specific sensing system being evaluated; and provide a summary of test measurements, data retention practices, data analysis results, and conclusions. The Earth Resources Observation and Science Cal/Val Center of Excellence system characterization team completed data analyses to characterize the geometric (interior and exterior) and radiometric performances. Results of these analyses indicate that the EMIT sensor has a band-to-band geometric performance in the range of −0.355 to 0.210 pixel with a few exceptions of shortwave infrared channels. Geometric offset relative to the Landsat 8 Operational Land Imager ranged from −15.966 meters (−0.266 pixel) to 43.844 meters (0.731 pixel). Offset of a radiometric comparison ranged from −0.016 to 0.025, and slope of a radiometric comparison ranged from 0.837 to 0.985. EMIT agreed with Radiometric Calibration Network measurements within 5 percent across most of the spectral channels.

Open-File Report

Wangyanite, PdNi8S8, a new Pd end-member mineral of the pentlandite group from the J-M reef, Stillwater Complex, Montana, USA

Wangyanite (IMA2024-008a), ideally PdNi 8 S 8 , is a Pd end-member mineral of the pentlandite group that was discovered in the J-M reef of the Stillwater Complex, Montana, USA. Wangyanite occurs as anhedral-subhedral granular crystals 200–400 µm in size, associated with isoferroplatinum, braggite, pentlandite, and chalcopyrite interstitial to plagioclase grains within anorthosite. Wangyanite exhibits a yellowish brown color with a black streak and a metallic luster. It is brittle with uneven fractures, and has a calculated density of 5.14 g/cm 3 . The mineral does not show discernible pleochroism, bireflectance, or anisotropy. It has an average composition of 9.95 wt.% Pd, 31.95 wt.% Ni, 25.02 wt.% Fe, 0.57 wt.% Co, 31.74 wt.% S, totaling 99.23 wt.%. The empirical formula, based on eight sulfur atoms per formula unit, is (Pd 0.76 Co 0.08 ) Σ0.84 (Ni 4.39 Fe 3.60 ) Σ7.99 S 8 . Wangyanite has a cubic cell with a space group of Fm -3 m (#225), having lattice parameters of a = 10.1167(12) Å, V = 1035.4(4) Å 3 , and Z = 4. Its crystal structure has been solved by single-crystal three-dimensional electron diffraction study. The strongest X-ray diffraction lines of wangyanite are claculated at [ d in Å ( I %)( hkl )]: 5.841(14.03)(111), 3.050(100)(311), 1.947(29.16)(115,333), 1.264(11.66)(800), 3.577(8.79)(220), 2.920(20.82)(222), and 2.321(9.34)(331). Wangyanite shares the same crystal structure as pentlandite, but the octahedrally coordinated site is mainly occupied by Pd in wangyanite. Based on the textural features and previous experimental Pd-Fe-Ni-S phase system, wangyanite could form by peritectic reaction between braggite, pentlandite and sulfide liquid. These mineral associations are stable in a Ni-Pd-rich sulfide melt system at about 550 °C or even lower temperature. Therefore, wangyanite can potentially serve as an indicator of the presence of Pd-rich residual melts. The mineral is named in honor of Prof. Christina Yan Wang, a well-known researcher on platinum-group element (PGE) occurrences and enrichment mechanisms in mafic-ultramafic intrusions, notably those deposits related to the Emeishan large igneous province in China.

Montana

Dynamic drainage reorganization in Eastern Tibet: Insights from the Yangtze River first bend

The modern drainage network of eastern Tibet is widely believed to have developed through a series of river capture and flow reversal events; however, the timing and mechanisms driving this reorganization remain contentious. Among these events, the river capture that formed the First Bend of the Yangtze River (YFB) stands out as both iconic and particularly debated. Here we present sedimentary provenance data from the Late Miocene–Quaternary Dali Basin, located south of the YFB, which indicate that a southward-flowing Jinsha River (i.e., the present-day upper Yangtze River) sourced sediment to the Dali basin at ∼7.4–6.4 Ma in a drainage configuration different from that of today. Because this interval postdates the initial establishment of a near-modern Jinsha River system prior to the Miocene, our results imply at least two discrete fluvial reorganizations occurred at the YFB—one preceding ∼7.4 Ma and another following ∼6.4 Ma. By integrating these findings with landscape evolution modeling, we infer that the initiation of rapid uplift of the Yulong-Haba Mountains and the Diancang Shan may have been responsible for these drainage reorganizations. These results underscore that Cenozoic drainage systems on the eastern Tibetan Plateau have evolved dynamically on a short timescale of ∼10 5 –10 6 -year, rather than remaining in a long-term stationary configuration on ∼10 7 -year timescales.

eastern Tibetan Plateau, first bend of the Yangtze

Inference of pattern-based geological CO2 sequestration and oil recovery potential in a commingled main pay and residual oil zone CO2-EOR flood

Several detailed studies have shown that residual oil zones (ROZs) can present significant resources for additional hydrocarbon recovery as well as subsurface carbon dioxide (CO 2 ) sequestration via enhanced oil recovery by injecting CO 2 (CO 2 -EOR). Field development strategies included new wells drilled dedicated to main pay zones (MPZ) and ROZs, or existing wells in MPZs deepened to ROZs for commingled injection-production using different well patterns. The latter presented a challenge when discerning the injection and production from each of the zones, and for subsequent quantification of CO 2 sequestration and EOR potential from different patterns and from the field. In this paper, an innovative method for analyzing commingled injections and productions from MPZs and ROZs, with application to pattern-based data from four staggered line drive patterns in Wasson Field's Denver Unit, Texas, USA, was developed. Decline curve and ratio-trend methods were used as means of history-matching and forecasting. Cumulative production-time and cumulative production-rate data for oil, gas, and water, as well as water-oil ratio (WOR) and gas-oil ratio (GOR), were analyzed along with injection data for time intervals covering major injection events in MPZ, or MPZ and ROZ combined. A combined analysis enabled inference of allocation of fluids into different zones during WAG (water alternating gas) injection and thereby estimation of CO 2 storage, utilization, and retention in different zones as a function of total injection. Results show that ROZs generally present higher CO 2 sequestration potential compared to MPZs, and a comparable incremental oil recovery factor of ∼20%, on average. Results based on ratio analysis further show that while the WOR trend of the pattern production is mostly dominated and controlled by ROZ, GOR is controlled by both intervals. Although the method relying on decline curves and the approach used in zonal fluid allocations are subject to their limitations, this study presents a practical and innovative well-pattern-based method to infer and forecast CO 2 sequestration and oil recovery quantities and fluid ratios from MPZs and ROZs in commingled operations and highlight the added potential offered by ROZs.

Texas

Simulation of groundwater flow and brine discharge to the Dolores River in the Paradox Valley, Montrose County, Colorado

Salinity, or total dissolved solids (TDS), of the Colorado River affects agricultural, municipal, and industrial water users and is an important concern in the Western United States. In the Paradox Valley of southwestern Colorado, natural discharge of sodium-chloride brine to the Dolores River from the underlying core of a salt-valley anticline accounts for about 6 percent of the salinity load to the Colorado River. Formation of the Paradox Valley began during the Miocene, and subsequent erosion exposed the Pennsylvania Paradox Formation in the core of the anticline where a cap rock, collapse features, breccia, and sodium-chloride saturated brine developed at the top of the exposed salt diapir. The discharge of brine to the Dolores River is affected by these dissolution features, along with seasonal hydrologic conditions and density-dependent flow between older dense brine and the younger fresh groundwater in the overlying alluvial aquifer. To reduce TDS concentrations in the Dolores River through the Paradox Valley, the Bureau of Reclamation has pumped brine from a series of shallow wells adjacent to the river since July 1996. The pumped brine is collected and piped to a deep disposal well where it is injected into the Mississippian Leadville Limestone at a depth of about 4,570-meters below land surface. The pumping and injection operation is collectively known as the Paradox Valley Unit (PVU), and by 2015, the PVU had substantially reduced TDS concentrations in the Dolores River by about 70 percent. Since 2019, injection-pressure limits and related seismic activity have constrained deep-well injection and thus brine pumping at the PVU. In cooperation with the Bureau of Reclamation, the U.S. Geological Survey developed a MODFLOW-6 three-dimensional, variable-density groundwater flow and TDS transport model of the Paradox Valley to evaluate the effects of PVU pumping operations on brine discharge to the Dolores River and to guide additional research. The finite-difference model grid consists of 76 rows and 48 columns oriented from northwest to southeast in alignment with valley topography and groundwater-flow directions in the near-surface freshwater alluvial aquifer. A 7-layer hydrogeologic framework was developed from existing datasets to represent the alluvial aquifer, cap rock, collapse breccia, and groundwater flow and TDS transport from the underlying Paradox Formation salt to the Dolores River. The model represents a 33-year transient calibration period from 1987 through 2020 that includes pre-PVU conditions from 1987 through June 1996 and post-PVU conditions from July 1996 through 2020. A 1,000-year simulation of groundwater flow and coupled TDS transport computed the initial conditions for the subsequent 33-year transient simulation. Observations of precipitation, streamflow, evaporation, agricultural land use, and PVU brine pumping rates were used to specify appropriate boundary conditions to the model representing time-varying recharge, tributary streamflow, groundwater underflow, evapotranspiration (ET), and PVU pumping. Values for average monthly streamflow and TDS concentration at the upstream streamgage, the Dolores River at Bedrock (USGS streamgage 09169500), were specified as model input where the Dolores River enters Paradox Valley. Observed pumping from the PVU, water levels and TDS concentrations in groundwater, and streamflow and estimated TDS concentrations at the downstream streamgage, the Dolores River near Bedrock (USGS streamgage 09171100), were calibration targets that constrained the manual calibration of model parameters representing aquifer hydraulic conductivity, storage, streambed conductance, recharge, and (ET). Two primary model-calibration targets were the match between observed and simulated TDS mass flux from PVU pumping wells and the match between estimated and simulated TDS mass flux to the Dolores River. The simulated TDS mass withdrawn by pumping wells is calculated by the model as the product of the assigned pumping rate and simulated groundwater TDS concentrations. Because actual pumping rates were assigned as simulated values, the total simulated PVU pumping for the 33-year calibration is within 0.5 percent of the observed values. However, simulated concentrations and thus mass flux of TDS withdrawn by the PVU pumping wells were consistently about 26 percent less than observed values for all the simulated time periods (33-year simulation, pre-PVU, and post-PVU). The representation of brine inflow was explored through additional modeling to evaluate the effect of the simulated brine source on groundwater TDS concentrations. Results indicated that a saturated-salt constant-flux brine source best replicated the magnitude and transient pattern observed for TDS mass flux from PVU pumping wells. The simulated TDS mass flux to the Dolores River is compared to estimates based on observed streamflow and specific conductance (SC) data for the downstream streamgage. The calibrated model provided a close fit of simulated to measured streamflow at the downstream streamgage, and the calibrated model fit to estimated TDS concentrations at the downstream streamgage was reasonable. The greatest differences between simulated and estimated values occurred during drought periods from June 2000 to March 2003, May 2012 to June 2013, and October 2013 to October 2014, when simulated TDS concentrations in the river were greater than estimated concentrations. In general, simulated TDS mass flux to the river for the pre-PVU period is in good agreement with estimated values (2-percent difference), but the model overestimated TDS mass flux to the river by about 41 percent during the post-PVU period. The model uncertainty with respect to TDS mass flux to the river indicates other processes or model parameters not well represented by the model are affecting the system, especially during drought. During model calibration, the most sensitive parameters were identified as vertical hydraulic conductivity of the alluvial aquifer, conductance of the Dolores River streambed, ET extinction depth and rate, and recharge rate. Five 5-year scenarios of conditions for 2021–25 were simulated to assist evaluation of alternative strategies to manage the discharge of brine into the Dolores River. The first scenario simulates no PVU pumping and serves as a base case for comparison to the other scenarios. Two scenarios simulate the effects of varying withdrawal timing at an annual rate about one-third less than during 2010 through 2018. During high-flow spring snowmelt runoff periods when brine discharge is naturally minimized, PVU pumping does not substantially affect salinity in the Dolores River, and comparison of these two scenarios indicates that scheduling brine withdrawals during times of low river stage is nearly as effective at reducing TDS mass flux to the river as pumping brine year-round. Cessation of pumping during periods of high river stage may be advantageous for system maintenance, brine injection, and seismic-risk reduction. The fourth scenario tested the effect of reducing irrigation-return flow on brine discharge and predicted a slight reduction of TDS mass flux to the Dolores River, but not as great a reduction as that of using the PVU to remove brine. The fifth scenario simulated 5 years of drought conditions without PVU pumping and indicates brine discharge during drought about 15 percent greater than during average hydrologic conditions. Results from scenario 5 are consistent with the calibrated model results and indicate that aquifer properties and ET processes and parameters may be affecting simulation results during drought. The Paradox Valley groundwater model provides a reasonable overall match to observed conditions in the Dolores River. The model is useful for evaluating relative differences between brine management scenarios to inform PVU operational decisions and to identify gaps in data and process understanding. Representation of the brine source, hydraulic-conductivity parameters, and recharge and ET processes were identified as potential areas for additional field and modeling research. Additional research in the Paradox Valley might include field-data collection that provides additional information on the hydrogeologic framework, groundwater levels, groundwater TDS concentrations, stream characteristics, and aquifer properties. Additional modeling efforts could benefit from applying advanced tools for model development, calibration, and visualization including parameter-estimation and sensitivity analysis. Statistical evaluation of known model uncertainties such as hydraulic conductivity, streambed conductance, representations of the brine source, recharge, and ET could improve the match between simulated and estimated TDS mass flux from PVU pumping wells and to the Dolores River further informing model predictions and system understanding for the Paradox Valley.

Colorado

Storm impact scale for barrier islands

A new scale is proposed that categorizes impacts to natural barrier islands resulting from tropical and extra-tropical storms. The proposed scale is fundamentally different than existing storm-related scales in that the coupling between forcing processes and the geometry of the coast is explicitly included. Four regimes, representing different levels of impact, are defined. Within each regime, patterns and relative magnitudes of net erosion and accretion are argued to be unique. The borders between regimes represent thresholds defining where processes and magnitudes of impacts change dramatically. Impact level 1 is the 'swash' regime describing a storm where runup is confined to the foreshore. The foreshore typically erodes during the storm and recovers following the storm; hence, there is no net change. Impact level 2 is the 'collision' regime describing a storm where the wave runup exceeds the threshold of the base of the foredune ridge. Swash impacts the dune forcing net erosion. Impact level 3 is the 'overwash' regime describing a storm where wave runup overtops the berm or, if present, the foredune ridge. The associated net landward sand transport contributes to net migration of the barrier landward. Impact level 4 is the 'inundation' regime describing a storm where the storm surge is sufficient to completely and continuously submerge the barrier island. Sand undergoes net landward transport over the barrier island; limited evidence suggests the quantities and distance of transport are much greater than what occurs during the 'overwash' regime.

Journal of Coastal Research

A Lake Charr pangenome reveals highly conserved Ohnologs as drivers of phenotypic diversity

Whole-genome duplication (WGD) is hypothesized to spur evolutionary diversification by producing genome-wide duplicate gene sets (Ohnologs) that are initially functionally redundant but can diverge markedly as the effects of relaxed selection accumulate over time. However, the underlying mechanisms remain unclear, in part because genomic studies often reconstruct Ohnolog evolution over millions of years, during which subsequent mutations can obscure deep-time signals. Investigating the relationship between Ohnolog evolution and diversification on a contemporary timescale offers clearer insights. We explore this relationship in Lake Charr ( Salvelinus namaycush ), where ∼10% of genes are retained highly conserved polyploid duplicates following the Salmonid-Specific Fourth Round WGD. Using 31 chromosome-level assemblies of Lake Charr from morphologically and ecologically diverse populations, joined into a pangenome graph, we characterized 189,555 structural variants (SVs) that were significantly less likely to affect genes retained as sequence-conserved Ohnolog pairs, nuancing the hypothesis that gene redundancy, relaxed selection, and functional diversification are intertwined. However, we found that SVs affecting such conserved Ohnologs may be potent drivers of adaptive evolution. Notably, we identified a putative 938-Kb interchromosomal translocation containing 25 genes with highly conserved Ohnologs in a paralogous (but untranslocated) genomic block. This putative translocation appears to have facilitated Ohnolog divergence in ankrd11 and hp , genes putatively linked to craniofacial and lipid metabolic diversity in sympatric Lake Superior morphs. This research reveals that conserved Ohnologs previously presumed to be redundant remain a reservoir for adaptive change.

BioRxiv

Recent scientific contributions by the U.S. Geological Survey in the San Francisco Bay and Sacramento–San Joaquin Delta Estuary

Introduction The San Francisco Bay and Sacramento–San Joaquin Delta Estuary (hereafter, Bay-Delta) is the largest estuary on the West Coast of the United States. The Bay-Delta covers more than 1,600 square miles and drains a watershed of more than 75,000 square miles, which is greater than 40 percent of California. The region surrounding the Bay-Delta is home to about 10 million people, and its habitats (fig. 1) support more than 800 plant and animal species. The waterways of the Bay-Delta are the central hub of California’s extensive freshwater delivery system, supplying water to more than 27 million Californians and 4 million acres of farmland in the Central Valley. The U.S. Geological Survey (USGS) is the primary science agency of the U.S. Department of the Interior, providing a broad range of Earth, water, biological, and mapping data and expertise to inform natural resource management across the country. This fact sheet focuses on research conducted by the USGS in the Bay-Delta region, mostly within the past 5 years. The fact sheet is organized across five major themes: water flow and water quality, fish and wildlife, wetland restoration, invasive species, and hazards. In each of these areas, the USGS works closely with Federal, State, and local agencies; academia; and non-governmental organizations to provide objective, evidence-based science. The data and knowledge gained from USGS research and monitoring are publicly available and are routinely used by agencies, including the U.S. Bureau of Reclamation, U.S. Army Corps of Engineers, U.S. Fish and Wildlife Service, California Department of Water Resources, California Department of Fish and Wildlife, California State Water Resources Control Board, Delta Stewardship Council, and many additional organizations and stakeholders to inform management of the Bay-Delta region and its resources.

California

Influence of inherited structure on flexural extension in foreland basin systems: Evidence from the northern Arkoma basin and southern Ozark dome, USA

Extensional faults are key components of foreland basin systems. They form within the upper crust in response to flexure of the lithosphere and accommodate subsidence within the foredeep and forebulge depozones. Such faults are excellent proxies for orogenic system evolution and control the distribution of natural resources and hazards. However, the spatiotemporal evolution of flexural extension has not been documented previously at a regional scale, thereby limiting our understanding of underlying geodynamic controls. Here, we resolve late Paleozoic flexural extension in the northern Arkoma basin and southern Ozark dome, USA. We synthesize a large database of previous mapping, existing research, subsurface data, and geophysical data into 3D geologic and 2D kinematic models. Mesh surfaces representing several key horizons from the Carboniferous Period (ca. 335-306 Ma) were constructed. These surfaces were built from oil and gas well tops (n = ∼10,000) and surface geologic map contacts using an advanced kriging method. The mesh surfaces are offset by a complex 3D fault network, allowing detailed analysis of along-strike and down-dip variations in fault displacement. Analysis of the 3D model reveals a regular and repeated fault segmentation pattern wherein E -W striking, left- and foreland-stepping en échelon normal faults are segmented by inherited NE striking basement faults. Maximum vertical separation along the E -W normal faults is generally focused between the inherited NE-trending faults. This suggests that the inherited basement faults delocalized extensional strain during late Paleozoic normal faulting. Maximum vertical separation and fault localization may correlate to areas with high-amplitude positive magnetic anomalies interpreted as Mesoproterozoic granitic rocks. Speculative covariance of magnetic anomalies and fault displacements implies that the relatively strong basement granite concentrated stress, leading to localized faulting within the relatively thin sedimentary cover. Lastly, we show that flexural extension migrated southeast to northwest from the Chesterian-Morrowan (ca. 335-319 Ma) to the Desmoinesian (ca. 306 Ma). The migratory flexural extension may be explained by diachronous loading during Pangean assembly, or by synchronous loading but variable load compensation due to inherent factors.

Arkansas, Oklahoma

Re-examining the growing degree day minimum for grass carp spawning initiation in Lake Erie: Have we missed the mark?

Understanding the timing of life history processes of invasive fish species, such as adult aggregations during spawning, allows natural resource managers to optimize targeted population control efforts. Temperature-based estimates of the timing of spawning initiation for grass carp ( Ctenopharyngodon idella ) exist from its native range, but have not previously been developed for grass carp reproduction in its invaded range in the Laurentian Great Lakes of North America. We accounted for differences among methods across studies and calculated cumulative growing degree days (GDD) for the dates of grass carp egg capture in Lake Erie tributaries (Sandusky, Maumee, and Huron rivers) during 2015–2024 and compared these values to the existing GDD base 15°C requirement estimate from the native range (633 GDD–15°C). The earliest egg detection in Lake Erie (Sandusky River) was 19 GDD–15°C or 361 GDD–5°C (latest egg detection was 2285 GDD–5°C from the Sandusky River), indicating that spawning was initiated up to 25 days earlier than would be predicted by the native range GDD. Moreover, spawning in Lake Erie tributaries occurred earlier than predicted for 58% of spawning events examined based on the native range GDD. The GDD values for spawning initiation in Lake Erie tributaries can be used to refine the timing of control efforts targeting pre-spawn and spawning adult fish, inform the timing of egg sampling, and provide linkages to existing early life stage models to infer the length of the growing season available for age-0 fish to reassess tributary suitability.

Lake Erie, Maumee, River, Sandusky river

A high-resolution 3-D P-wave velocity structure of the south-central Cascadia subduction zone from wide-angle shore-crossing seismic refraction data

This study addresses a significant gap in understanding the features of the south-central Cascadia subduction zone, a region characterized by complex geologic, tectonic, and seismic transitions both offshore and onshore. Unlike other segments along this margin, this area lacks a 3-D velocity model to delineate its structural and geological features on a fine scale. To address this void, we developed a high-resolution 3-D P-wave velocity model using active source seismic data from ship-borne seismic shots recorded on temporary and permanent onshore seismic stations and ocean-bottom seismometers. Our model shows velocity variations across the region with distinct velocity-depth profiles for the Siletz, Franciscan, and Klamath terranes in the overlying plate. We identified seaward dipping high-velocity static backstops associated with the Siletz and Klamath terranes, situated near the shoreline and further inland, respectively. Regions of reduced crustal velocity are associated with crustal faults. Moreover, there is significant along-strike depth variation in the subducting slab, which is about 4 km deeper near the thick, dense Siletz terrane and becomes shallower near the predominantly less-dense Franciscan terrane. This highlights a sudden tectonic and geologic transition at the southern boundary of the Siletz terrane. Our velocity model also indicates slightly increased hydration, though still minimal, in both the oceanic crust and the upper mantle of the subducting plate compared to other parts of the margin.

British Columbia, California, Oregon, Washington

Groundwater age estimates for the Mississippi River Valley alluvial aquifer based on tracer data collected during 2018–20

This study characterized groundwater age across the Mississippi River Valley alluvial aquifer (MRVA). Groundwater samples from 69 MRVA wells and 19 wells in Tertiary units of the Mississippi embayment aquifer system (MEAS) were analyzed for sulfur hexafluoride (SF 6 ), tritium ( 3 H), helium (He), and (or) carbon-14 of dissolved inorganic carbon ( 14 C). The age distributions of 89 samples were estimated by fitting lumped parameter models to processed tracer concentrations with the U.S. Geological Survey software TracerLPM. Mean ages of MRVA groundwater samples ranged from 12 to 22,000 years, with a median of 140 years. Mean ages of MEAS groundwater samples ranged from 230 to 52,000 or more years, with a median of 13,500 years. The spatial distribution of MRVA groundwater ages was found to be influenced by depth, inflow of groundwater from deeper units, and soil saturated hydraulic conductivity. In parts of the MRVA, the spatial distribution of MRVA groundwater ages was found to be influenced by annual recharge and (or) annual groundwater pumpage.

Alabama, Arkansas, Illinois, Kentucky, Louisiana,

Wave propagation in layered soil deposits

Recent advances in the general theory of viscoelastic waves and rays in layered media provide a rigorous mathematical framework for site-specific, soil-response models used for earthquake resistant design. The advances provide general closed-form anelastic solutions for the classic problems of the response of a stack of soil layers to S and P waves, ray theory for reflected and refracted waves, Rayleigh- and Love-Type surface waves, and head waves. These general solutions valid for anelastic media regardless of the amount of material damping yield new insights regarding the characteristics of seismic waves and their ray paths that are not provided by conventional models. They provide corresponding numerical ground-response models and ray-tracing computation algorithms that account for changes in velocity and attenuation of anelastic waves associated with changes in inhomogeneity of the waves induced by anelastic soil and soil-rock boundaries. These anelastic effects manifest themselves as variations in amplitude response, amplitude attenuation, raypath location, and travel time as observed at the Earth’s surface. Implications of these anelastic effects for soil-response models used for earthquake resistant design are provided herein.

Conference Paper

Evaluating Laramide orogenesis via flexural basin response in the San Juan basin, New Mexico and Colorado

A challenge in interpreting the location, timing, and magnitude of ancient orogenic events is that ongoing uplift and erosion in the hinterlands often destroys much of the primary record of these events. However, basin-thickness patterns in the sedimentary record can provide complimentary evidence of uplift via flexural effects. Here, we deploy well-log correlation, isochores, basin modeling, flexural modeling, and subcrop mapping to evaluate the Late Cretaceous to Paleogene basin response to Laramide tectonism in the San Juan basin. A wedge of upper Campanian to Maastrichtian sedimentary rock thickens from 200 to 800 meters from southeast to northwest in the basin. This pattern can be successfully simulated via flexural modeling if we infer early Laramide uplift along the northwest basin flank that produced a 0.8 km high topographic load. The Laramide unconformity bounds the top of this Upper Cretaceous sedimentary wedge and truncates progressively older strata to the east, further supporting a westward tilt of the basin. The onset of Campanian Laramide flexure may have also contributed to the profound transgression from the upper Menefee Formation to the Lewis Shale. The Paleocene isochore map displays an approximately symmetrical pattern, with thickening towards the center of the basin. This suggests the possibility of competing flexural loads. The base Eocene structure indicates an asymmetric deep on the northeast flank of the basin, providing flexural evidence of contemporaneous uplift/loading of the Nacimiento uplift and Archuleta arch; this has been modeled as ~2.1 km load height. Both Cretaceous and Paleocene sedimentary wedges are narrow, suggesting low flexural rigidity; modeled effective elastic thicknesses (EET) are 20-30 km, comparable to estimates of modern EET for the region.

Colorado, New Mexico

Geochemical, mineralogical, and isotopic evidence for multi-stage genesis of the Hicks Dome REE + Y-HFSE-fluorite deposit, Illinois, USA

Hicks Dome hosts breccias enriched in rare earth elements (REE), Y, Th, F, Ba, Ti, Nb, and Be, alongside spatially associated lamprophyre dikes (ca. 271 Ma). Hicks Dome is located within the Illinois–Kentucky Fluorspar District, which hosts fluorite, Pb–Zn, and barite resources. This study investigates the genetic relationships between Hicks Dome mineralization in breccias, alkaline magmatism, and Illinois–Kentucky Fluorspar District mineralization. Lamprophyre dikes are light REE–enriched with chondrite-normalized abundances decreasing from La to Lu. The Host Breccia exhibits middle and heavy REE–enriched patterns that mirror those of the principal REE–Th host minerals, including fluorapatite, xenotime, and thorite. Textural evidence suggests recrystallization of phosphates, sulfates, and Ti–Nb oxides in the Host Breccia. U–Pb geochronology constrains multiple mineralizing events, with ages of 277 ± 18 Ma from low-Th apatite interpreted as main-stage mineralization, and 121.6 ± 9.7 Ma from high-Th apatite indicating later overprinting. O–H–C stable isotope data provide evidence for multiple stages of fluid-rock interaction and fluid mixing: (1) early magmatic fluids dissolved limestone country rock, (2) mixing between magmatic fluids and basinal brines led to main-stage mineralization in the Host Breccia, and (3) late-stage mineralization occurred following mixing of meteoric water and basinal brine. These results indicate that heavy REEs, high field strength elements, and fluorine precipitated proximal to its alkaline magmatic source because of fluid–rock interactions and fluid mixing. Subsequent fluid mixing drove late-stage recrystallization and additional fluorite formation, a process that may be similar to mineralization in the Illinois-Kentucky Fluorspar District.

Illinois

Flood-inundation maps of the Blue River and major tributaries in and near Kansas City, Missouri, 2023–25

Digital flood-inundation maps for 35.5 miles of the Blue River, in and near Kansas City, Missouri, were created by the U.S. Geological Survey (USGS) in cooperation with the City of Kansas City. Maps were also developed for a combined 7.3 miles of Brush Creek (4.4 miles) and Indian Creek (2.9 miles), two primary tributaries to the Blue River in the study reach. The flood-inundation maps, available through the USGS Flood Inundation Mapping Program website at https://water.usgs.gov/osw/flood_inundation/ , depict estimates of the areal extent and depth of flooding, depth of water above first-floor elevations in selected buildings, water velocity, water-surface elevations, and time of travel corresponding to selected water levels or gage heights (hereafter referred to as “stages”) at nine reference USGS streamgages—five on the Blue River (USGS station numbers 06893590, 06893578, 06893500, 06893150, and 06893100), two on Brush Creek (USGS station numbers 06893562 and 06893557), one on Indian Creek (USGS station number 06893390), and one on the Missouri River (USGS station number 06893000). Near-real-time stages at these streamgages may be obtained from USGS Water Data for the Nation at https://doi.org/10.5066/F7P55KJN or the National Weather Service National Water Prediction Service at http://water.noaa.gov/ , which also forecasts flood hydrographs at seven of these sites (USGS station numbers 06893000, 06893590, 06893578, 06893500, 06893150, 06893557, and 06893390). Flood profiles were computed for eight map reaches by means of two-dimensional hydraulic models. The models were calibrated using the USGS-developed stage–streamflow relations at each reference streamgage. Two map reaches on the lower Blue River also include the effects of backwater from the Missouri River on flood inundation extent and hydraulic characteristics. The hydraulic models were used to compute water-surface profiles for flood stages at 1-foot intervals referenced to the streamgage datums. The profile stages ranged from the National Weather Service “Action Stage” or near bankfull to a stage exceeding the highest recorded water level at each streamgage. The simulated water-surface profiles were then combined with a digital elevation model (derived from light detection and ranging data having a nonvegetated vertical accuracy of a maximum 10-centimeter root-mean-square error) to delineate the area flooded at each water level and the associated hydraulic characteristics. The availability of these maps, along with information regarding current stage from the USGS streamgage and forecasted high-flow stages from the National Weather Service, will provide emergency management personnel, resource managers, and residents with information that could be critical for flood-response activities such as evacuations and road closures, as well as for postflood recovery efforts.

Kansas, Missouri

Climate-adaptive urban planning: Quantitative assessment of drought impacts and practical strategies for climate-resilient urban green spaces

Urban green spaces (UGSs) are vital for enhancing a city’s resilience and livability; however, their functionality is increasingly jeopardized by drought, particularly in water-scarce regions. This study evaluates drought impact on UGSs in Metropolitan Adelaide, Australia, a representative semi-arid urban system, using satellite-derived Normalized Difference Vegetation Index (NDVI) time-series data spanning 2000–2020. Vegetation dynamics were analyzed through Seasonal-Trend decomposition using Loess (STL), standardized anomaly assessment, lagged Pearson correlation, Ordinary Least Squares (OLS) regression, and Mann–Kendall trend analysis. To isolate climatically sensitive signals, 29 urban lawn patches were examined separately from mixed urban canopy, given their shallow root systems and direct dependence on surface moisture. NDVI declined by approximately 0.09 units during the Millennium Drought (2001–2009), with summer greenness deficits reaching 24% below the 20-year benchmark. Temperature was the dominant driver of lawn NDVI variability (r = −0.863, R 2 = 74.5%), substantially exceeding the effect of rainfall (r = 0.156, R 2 = 2.4%). El Niño–Southern Oscillation (ENSO) cycles modulated vegetation responses, with La Niña years supporting recovery and El Niño years amplifying decline. Post-drought recovery remained incomplete, with NDVI deficits of 8–20% persisting through 2020; full recovery was observed only in 2017, coinciding with the highest recorded summer rainfall. No significant directional trend was detected over the full study period (Mann–Kendall τ = 0.005, p = 0.908). These findings demonstrate that heat, rather than water limitation alone, is the primary driver of vegetation stress in urban systems, highlighting the benefits of integrated management strategies that address both warming and moisture deficits to sustain urban green infrastructure under future climate conditions. We introduce the concept of “urban greenery drought,” referring to a form of vegetation stress in managed urban landscapes where greenness is reduced primarily by elevated temperature and atmospheric demand despite water availability.

Adelaide