USGS Science⌕ Search

SEARCH · USGS Science

Results for “Animals”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,009 records · Page 56Linked to original sources
USGS2023

Effects of landcover on mesocarnivore density and detection rate along an urban to rural gradient

Human development has major implications for wildlife populations. Urban-exploiter species can benefit from human subsidized resources, whereas urban-avoider species can vanish from wildlife communities in highly developed areas. Therefore, understanding how the density of different species varies in response to landcover changes associated with human development can provide important insight into how wildlife communities are likely to change and provide a starting point for predicting the consequences of those changes. Here, we estimated the population density of five common mesocarnivore species (coyote ( Canis latrans ), bobcat ( Lynx rufus ), red fox ( Vulpes vulpes ), raccoon ( Procyon lotor ), and Virginia opossum ( Didelphis virginiana) ) at 12 study sites along an urban to rural gradient in the greater Fayetteville Area, Northwest Arkansas, USA between November 2021, and March 2022. At each study site, we applied the Random Encounter Model (REM) to data from camera traps to calculate the density of five focal species. Coyote density ranged from 0.5 to 0.93 individuals/km 2 . Raccoon density ranged from 0.19 to 20.25 individuals/km 2 . Bobcat density ranged from 0 to 1.06 individuals/km 2 . Opossum density ranged from 0 to 3.43 individuals/km 2 . Red fox density ranged from 0 to 0.10 individuals/km 2 . Coyote and raccoon density showed a positive relationship with anthropogenic noise. Opossum density increased with HUD. Red Fox and bobcat density showed a negative relationship with forest area and a positive relationship with distance to water respectively, however confidence intervals for both species overlapped zero. The density estimates we report based on camera trap data of unmarked animals were consistent with reports from the literature for these same species derived from traditional methods, providing additional support to the REM as a viable, non-invasive method to calculate density of unmarked species. Our second analysis consisted of taking camera level density estimates and treating them as detection rates corrected for camera viewshed and animal movement. Coyote and raccoon detection rate showed a positive relationship with anthropogenic noise. Red Fox detection rate was positively related to developed open space, and negatively related to distance to water. Similarly to red fox, opossums detection rate was higher in areas with more developed open space. We found no evidence that bobcat density or detection rate varied with any of the landcover or anthropogenic variables we measured.

Arkansas↗
USGS2026

The influence of riparian zone grazing on channel stability in an arroyo

The introduction of large herds of domesticated grazing animals by European immigrants in the late 19th century is one primary hypothesis used to explain the initiation of arroyo cutting in the American West. But studies designed to quantify the effects of grazing on watershed hydrology and sedimentation have had conflicting results that are often scale dependent. We used a before-and-after study design to examine effects of changes in cattle grazing practices on channel stability in Muddy Creek, an arroyo in the Colorado River headwaters. We digitized 620 meander loop cutoff geometries in the alluvial bottom of Muddy Creek and used meander loop cutoff rate as a broad measure of channel stability. Poisson regression modeling indicated that the change in grazing practices caused an order-of-magnitude decrease in meander loop cutoff rate that was independent of other forcings. Repeat measurements of channel geometry showed a decline in bankfull channel width of about 40% after the changes were implemented. Increases in riparian vegetation density are deduced to be the primary mechanism for the increase in channel stability. Prior to the changes in grazing practices, at least one meander loop cutoff occurred each year, some of which were large enough to create headcuts that scale with the depth of downcutting in this arroyo system. Our analysis demonstrates the profound effects that different grazing practices have on channel stability in headwater arroyo systems, and the potential for grazing animals to initiate a cascade of sediment yields to receiving stream networks.

Colorado, Utah, Wyoming↗
USGS2021

Exposure to domoic acid is an ecological driver of cardiac disease in southern sea otters

Harmful algal blooms produce toxins that bioaccumulate in the food web and adversely affect humans, animals, and entire marine ecosystems. Blooms of the diatom Pseudo-nitzschia can produce domoic acid (DA), a toxin that most commonly causes neurological disease in endothermic animals, with cardiovascular effects that were first recognized in southern sea otters. Over the last 20 years, DA toxicosis has caused significant morbidity and mortality in marine mammals and seabirds along the west coast of the USA. Identifying DA exposure has been limited to toxin detection in biological fluids using biochemical assays, yet measurement of systemic toxin levels is an unreliable indicator of exposure dose or timing. Furthermore, there is little information regarding repeated DA exposure in marine wildlife. Here, the association between long-term environmental DA exposure and fatal cardiac disease was investigated in a longitudinal study of 186 free-ranging sea otters in California from 2001 – 2017, highlighting the chronic health effects of a marine toxin. A novel Bayesian spatiotemporal approach was used to characterize environmental DA exposure by combining several DA surveillance datasets and integrating this with life history data from radio-tagged otters in a time-dependent survival model. In this study, a sea otter with high DA exposure had a 1.7-fold increased hazard of fatal cardiomyopathy compared to an otter with low exposure. Otters that consumed a high proportion of crab and clam had a 2.5- and 1.2-times greater hazard of death due to cardiomyopathy than otters that consumed low proportions. Increasing age is a well-established predictor of cardiac disease, but this study is the first to identify that DA exposure affects the risk of cardiomyopathy more substantially in prime-age adults than aged adults. A 4-year-old otter with high DA exposure had 2.3 times greater risk of fatal cardiomyopathy than an otter with low exposure, while a 10-year old otter with high DA exposure had just 1.2 times greater risk. High Toxoplasma gondii titers also increased the hazard of death due to heart disease 2.4-fold. Domoic acid exposure was most detrimental for prime-age adults, whose survival and reproduction are vital for population growth, suggesting that persistent DA exposure will likely impact long-term viability of this threatened species. These results offer insight into the pervasiveness of DA in the food web and raise awareness of under-recognized chronic health effects of DA for wildlife at a time when toxic blooms are on the rise.

California↗
USGS2006

Hibernating bears as a model for preventing disuse osteoporosis

The hibernating bear is an excellent model for disuse osteoporosis in humans because it is a naturally occurring large animal model. Furthermore, bears and humans have similar lower limb skeletal morphology, and bears walk plantigrade like humans. Black bears (Ursus americanus) may not develop disuse osteoporosis during long periods of disuse (i.e. hibernation) because they maintain osteoblastic bone formation during hibernation. As a consequence, bone volume, mineral content, porosity, and strength are not adversely affected by annual periods of disuse. In fact, cortical bone bending strength has been shown to increase with age in hibernating black bears without a significant change in porosity. Other animals require remobilization periods 2-3 times longer than the immobilization period to recover the bone lost during disuse. Our findings support the hypothesis that black bears, which hibernate for as long as 5-7 months annually, have evolved biological mechanisms to mitigate the adverse effects of disuse on bone porosity and strength. ?? 2005 Elsevier Ltd. All rights reserved.

Journal of Biomechanics↗
USGS2019

Serum iron analytes in healthy and diseased Florida manatees (Trichechus manatus latirostris)

Serum iron concentration is usually decreased in true iron deficiency and with inflammatory disease in man and domestic animals. Serum total iron binding capacity (TIBC) may be increased in true iron deficiency and decreased with inflammatory disease. This prospective study was designed to measure serum iron analytes in healthy free-ranging and housed Florida manatees (Trichechus manatus latirostris) of both sexes and various ages and to evaluate the effects of diseases common to manatees on these analytes. Blood samples were collected without anticoagulant from 137 healthy free-ranging manatees, 90 healthy housed manatees and 74 free-ranging diseased manatees, and serum was prepared by centrifugation. Serum iron concentration and unsaturated iron binding capacity were measured colourimetrically, and TIBC and percent transferrin saturation with iron were calculated. Serum amyloid A (SAA) was measured to assist in the health assessment of manatees and provide evidence of inflammation in diseased manatees. Based on the serum iron analytes, iron availability was lower in immature manatees compared with adults, and it was lower in housed manatees compared with free-ranging manatees. In contrast to other mammals studied, serum iron concentration was elevated rather than depressed in late pregnancy. Serum iron concentrations and transferrin saturation with iron percentages were significantly lower, and SAA concentrations were significantly higher, in diseased (ill and injured) manatees compared with healthy manatees. Serum iron concentration and transferrin saturation with iron values were negatively correlated with SAA concentrations, and manatees with the highest SAA concentrations had lower serum TIBC values. These findings indicate that inflammation is the major factor responsible for alterations in iron analytes in diseased manatees. Consequently, hypoferraemia may be used as supportive evidence of inflammatory disease in manatees (unless haemorrhage is also present). A decision threshold of ≤13.8 μmol/l was determined for hypoferraemia using receiver operating curve analysis. Based on studies in man and domestic animals, iron therapy is unnecessary for manatees with hypoferraemia associated with inflammation and has the potential for causing tissue damage and increased susceptibility to bacterial infections.

Florida↗
USGS2013

Dynamics of fecal indicator bacteria, bacterial pathogen genes, and organic wastewater contaminants in the Little Calumet River: Portage Burns Waterway, Indiana

Little information exists on the co-occurrence of fecal indicator bacteria (FIB), bacterial pathogens, and organic wastewater-associated chemicals (OWCs) within Great Lakes tributaries. Fifteen watershed sites and one beach site adjacent to the Little Calumet River–Portage Burns Waterway (LCRPBW) on Lake Michigan were tested on four dates for pH, dissolved oxygen, specific conductance, chloride, color, ammonia- and nitrate-nitrogen, soluble phosphorus, sulfate, turbidity, and atrazine; for concentrations of FIB; and for genes indicating the presence of human-pathogenic enterococci (ENT) and of Shiga-toxin producing Escherichia coli (EC) from various animal sources. Nineteen samples were also tested for 60 OWCs. Half of the watershed samples met EC recreational water quality standards; none met ENT standards. Human-wastewater-associated OWC detections were correlated with human-influence indicators such as population/km 2 , chloride concentrations, and the presence of WWTP effluents, but EC and ENT concentrations were not. Bacterial pathogen genes indicated rural human and several potential animal sources. OWCs of human or ecosystem health concern (musk fragrances AHTN and HHCB, alkylphenols, carbamazepine) and 3 bacterial pathogen genes were detected at the mouth of the LCRPBW, but no such OWCs and only 1 pathogen gene were detected at the beach. The LCRPBW has significant potential to deliver FIB, potential bacterial pathogens, and OWCs of human or ecosystem health concern to the nearshore of Lake Michigan, under conditions enhancing nearshore transport of the river plume. Nearshore mixing of lake and river water, and the lack of relationship between OWCs and FIB or pathogen genes, pose numerous challenges for watershed and nearshore assessment and remediation.

Indiana↗
USGS2005

Repeated surveys by acoustic Doppler current profiler for flow and sediment dynamics in a tidal river

A strategy of repeated surveys by acoustic Doppler current profiler (ADCP) was applied in a tidal river to map velocity vectors and suspended-sediment indicators. The Sacramento River at the junction with the Delta Cross Channel at Walnut Grove, California, was surveyed over several tidal cycles in the Fall of 2000 and 2001 with a vessel-mounted ADCP. Velocity profiles were recorded along flow-defining survey paths, with surveys repeated every 27 min through a diurnal tidal cycle. Velocity vectors along each survey path were interpolated to a three-dimensional Cartesian grid that conformed to local bathymetry. A separate array of vectors was interpolated onto a grid from each survey. By displaying interpolated vector grids sequentially with computer animation, flow dynamics of the reach could be studied in three-dimensions as flow responded to the tidal cycle. Velocity streamtraces in the grid showed the upwelling of flow from the bottom of the Sacramento River channel into the Delta Cross Channel. The sequential display of vector grids showed that water in the canal briefly returned into the Sacramento River after peak flood tides, which had not been known previously. In addition to velocity vectors, ADCP data were processed to derive channel bathymetry and a spatial indicator for suspended-sediment concentration. Individual beam distances to bed, recorded by the ADCP, were transformed to yield bathymetry accurate enough to resolve small bedforms within the study reach. While recording velocity, ADCPs also record the intensity of acoustic backscatter from particles suspended in the flow. Sequential surveys of backscatter intensity were interpolated to grids and animated to indicate the spatial movement of suspended sediment through the study reach. Calculation of backscatter flux through cross-sectional grids provided a first step for computation of suspended-sediment discharge, the second step being a calibrated relation between backscatter intensity and sediment concentration. Spatial analyses of ADCP data showed that a strategy of repeated surveys and flow-field interpolation has the potential to simplify computation of flow and sediment discharge through complex waterways. The use of trade, product, industry, or firm names in this report is for descriptive purposes only and does not constitute endorsement of products by the US Government. ?? 2005 Elsevier B.V. All rights reserved.

Journal of Hydrology↗
USGS2005

Enhanced zinc consumption causes memory deficits and increased brain levels of zinc

Zinc deficiency has been shown to impair cognitive functioning, but little work has been done on the effects of elevated zinc. This research examined the effect on memory of raising Sprague–Dawley rats on enhanced levels of zinc (10 ppm ZnCO 3 ; 0.153 mM) in the drinking water for periods of 3 or 9 months, both pre- and postnatally. Controls were raised on lab water. Memory was tested in a series of Morris Water Maze (MWM) experiments, and zinc-treated rats were found to have impairments in both reference and working memory. They were significantly slower to find a stationary platform and showed greater thigmotaxicity, a measure of anxiety. On a working memory task, where the platform was moved each day, zinc-treated animals had longer latencies over both trials and days, swam further from the platform, and showed greater thigmotaxicity. On trials using an Atlantis platform, which remained in one place but was lowered on probe trials, the zinc-treated animals had significantly fewer platform crossings, spent less time in the target quadrant, and did not swim as close to the platform position. They had significantly greater latency on nonprobe trials. Microprobe synchrotron X-ray fluorescence (μSXRF) confirmed that brain zinc levels were increased by adding ZnCO 3 to the drinking water. These data show that long-term dietary administration of zinc can lead to impairments in cognitive function.

Physiology & Behavior↗
USGS2023

Luminescence ages and new interpretations of the timing and deposition of Quaternary sediments at Natural Trap Cave, Wyoming

Natural Trap Cave, located in the Big Horn Mountains of north-central Wyoming, has a history of trapping and preserving a range of North American fauna that plummeted into the deep vertical entrance. These animal remains were buried and preserved within sediments of the main chamber and, in turn, have helped elucidate the procession of faunal dynamics during the latest glacial cycle. The cave location, south of the Laurentide and Cordilleran Ice Sheets, and proximal to Yellowstone, is at an ideal geographical juncture to provide insights to ecological changes in North America. The sediments that the animals are buried in inform us about transport and deposition both inside and outside of the cave that relate to catchment dynamics. We report on a series of optically stimulated luminescence (OSL) ages derived from samples obtained within the cave during excavation work in 2014 and in 2018. We also examine chronology produced by argon, tephrochronology, fission track, and luminescence techniques that have been used for understanding the infilling of the cave. The cave sediment ages and in situ measured gamma spectroscopy as measured in this study helped resolve an improved chronological age model when combined with previous data. The suite of OSL ages is interpreted through the stratigraphic relationships (and vertebrates contained within) which requires the use of an adequate age model; we use either the central age model or minimum age model where appropriate and with justification. Lowest sediments are dated to ∼150 ka with a hiatus at ∼130 to 52 ka. Above this, sediment deposition and entrainment of paleontological materials are representative of Pleistocene and early Holocene times, between 37 ± 6 ka and 7.6 ± 0.5 ka. The stratigraphic architecture suggests that deposition of materials into the cave is episodic and rapid, followed by quiescent periods where hydrologic scour, heavy overland flow , or possibly a cryo-hydrologic process may have altered unit relationships. Thus, the complementary geochronometers and the characteristics of quartz versus feldspar luminescence signals improve temporal interpretations of these complex deposits. This adapted understanding of mixing also sets the stage for future work with the aim to improve our understanding of ages and sources for ash units within these cave deposits. The three ash units recognized in the cave may represent an in-situ reworking of the same ash or may be representative of previously undocumented eruptions from the Yellowstone Caldera.

Wyoming↗
USGS2007

Influence of soil chemistry on metal and bioessential element concentrations in nymphal and adult periodical cicadas (Magicicada spp.)

Metal and bioessential element concentrations were measured in three species of 17-year periodical cicadas (Magicicada spp.) to determine how cicada tissue chemistry is affected by soil chemistry, measure the bioavailability of metals from both uncontaminated and lead-arsenate-pesticide contaminated soils, and assess the potential risks of observed metal contamination for wildlife. Periodical cicada nymphs feed on root xylem fluids for 13 or 17??years of underground development. The nymphs then emerge synchronously at high densities, before leaving their nymphal keratin exoskeleton and molting into their adult form. Cicadas are an important food source for birds and animals during emergence events, and influence nutrient cycles in woodland ecosystems. Nymphal exoskeletons and whole adult cicadas were sampled in Clarke and Frederick Counties, Virginia and Berkeley and Jefferson Counties, West Virginia during the Brood X emergence in May and June, 2004. Elements, such as Al, Fe, and Pb, are strongly enriched in the nymphal exoskeleton relative to the adult body; Cu and Zn are enriched in bodies. Concentrations of Fe and Pb, when normalized to relatively inert soil constituents such as Al and Ce, are similar in both the molt exoskeleton and their host soil, implying that passive assimilation through prolonged soil contact (adhesion or adsorption) might control these metal concentrations. Normalized concentrations of bioessential elements, such as S, P, K, Ca, Mn, Cu, Zn, and Mo, and chalcophile (sulfur-loving) elements, such as As, Se, and Au, indicate strong enrichment in cicada tissues relative to soil, implying selective absorption and retention by xylem fluids, the cicada nymphs themselves, or both. Element enrichment patterns in cicada tissues are similar to enrichment patterns observed in xylem fluids from tree roots. Chalcophile elements and heavy metals accumulate in keratin-rich tissues and may bind to sulfhydryl groups. Metal concentrations in the nymphal exoskeleton show a positive correlation with soil metal concentrations, with Au exhibiting particularly strong enrichment in the exoskeleton relative to soil concentrations. Metal concentrations in adult bodies do not correlate with soil chemistry. Bioessential elements S, Ca, Mn, Fe, and Zn differed by sex in adults, whereas Na, Mg, K, Ca, Mn, Fe, Zn, and As differed by species. Body concentrations of Ca differed by site conditions (orchard or reference setting). The high Pb contents of orchard soils contaminated by arsenical pesticide residues might inhibit Ca uptake by cicada nymphs. The adult cicadas contain concentrations of metals similar to, or less than, other invertebrates, such as earthworms. There does not appear to be a dietary threat to birds or other consumers of adult cicadas based on Maximum Tolerable Dietary Level (MTDL) Guidelines developed for agricultural animals.

Science of the Total Environment↗
USGS2008

A national reconnaissance of pharmaceuticals and other organic wastewater contaminants in the United States - I) Groundwater

As part of the continuing effort to collect baseline information on the environmental occurrence of pharmaceuticals, and other organic wastewater contaminants (OWCs) in the Nation's water resources, water samples were collected from a network of 47 groundwater sites across 18 states in 2000. All samples collected were analyzed for 65 OWCs representing a wide variety of uses and origins. Site selection focused on areas suspected to be susceptible to contamination from either animal or human wastewaters (i.e. down gradient of a landfill, unsewered residential development, or animal feedlot). Thus, sites sampled were not necessarily used as a source of drinking water but provide a variety of geohydrologic environments with potential sources of OWCs. OWCs were detected in 81% of the sites sampled, with 35 of the 65 OWCs being found at least once. The most frequently detected compounds include N , N -diethyltoluamide (35%, insect repellant), bisphenol A (30%, plasticizer), tri(2-chloroethyl) phosphate (30%, fire retardant), sulfamethoxazole (23%, veterinary and human antibiotic), and 4-octylphenol monoethoxylate (19%, detergent metabolite). Although sampling procedures were intended to ensure that all groundwater samples analyzed were indicative of aquifer conditions it is possible that detections of some OWCs could have resulted from leaching of well-construction materials and/or other site-specific conditions related to well construction and materials. Future research will be needed to identify those factors that are most important in determining the occurrence and concentrations of OWCs in groundwater.

Science of the Total Environment↗
USGS2016

Endocrine disrupting activities of surface water associated with a West Virginia oil and gas industry wastewater disposal site

Currently, >95% of end disposal of hydraulic fracturing wastewater from unconventional oil and gas operations in the US occurs via injection wells. Key data gaps exist in understanding the potential impact of underground injection on surface water quality and environmental health. The goal of this study was to assess endocrine disrupting activity in surface water at a West Virginia injection well disposal site. Water samples were collected from a background site in the area and upstream, on, and downstream of the disposal facility. Samples were solid-phase extracted, and extracts assessed for agonist and antagonist hormonal activities for five hormone receptors in mammalian and yeast reporter gene assays. Compared to reference water extracts upstream and distal to the disposal well, samples collected adjacent and downstream exhibited considerably higher antagonist activity for the estrogen, androgen, progesterone, glucocorticoid and thyroid hormone receptors. In contrast, low levels of agonist activity were measured in upstream/distal sites, and were inhibited or absent at downstream sites with significant antagonism. Concurrent analyses by partner laboratories (published separately) describe the analytical and geochemical profiling of the water; elevated conductivity as well as high sodium, chloride, strontium, and barium concentrations indicate impacts due to handling of unconventional oil and gas wastewater. Notably, antagonist activities in downstream samples were at equivalent authentic standard concentrations known to disrupt reproduction and/or development in aquatic animals. Given the widespread use of injection wells for end-disposal of hydraulic fracturing wastewater, these data raise concerns for human and animal health nearby.

Science of the Total Environment↗
USGS2019

Use of blood clotting assays to assess potential anticoagulant rodenticide exposure and effects in free-ranging birds of prey

Non-target wildlife, particularly birds of prey, are widely exposed to and acutely poisoned by anticoagulant rodenticides (ARs). An unresolved issue surrounding such exposure, however, is the potential for sublethal effects. In particular, the consequences of AR exposure and resulting coagulopathy on health and survival of unintentionally exposed animals, which often encounter a multitude of anthropogenic stressors, are understudied. In a wildlife rehabilitation setting, AR intoxication may be masked by more obvious injuries related to collision with vehicles or electrocution, thereby obfuscating proximate from ultimate cause of mortality. An assessment of coagulation function of admitted wildlife may provide a means of identifying animals exhibiting sublethal coagulopathy, and ultimately ensuring provision of appropriate and swift treatment. In conjunction with routine diagnostics for injury and disease, we performed two blood clotting assays (prothrombin time, Russell's viper venom time) affected by vitamin K-dependent coagulopathy of samples from six species of live raptors admitted to a rehabilitation facility. We also measured clotting time in pre-fledgling barn owl chicks ( Tyto furcata ) from 10 nest sites in Lower Mainland Canada. Prolonged clotting time or failure to form a clot altogether was observed in 23.0% of 61 sampled raptors admitted to the rehabilitation facility. This is a biologically significant proportion of individuals given the fortuitous and likely biased nature by which raptors are found and admitted to rehabilitation facilities. In contrast, there was little evidence of coagulopathy in 19 pre-fledgling barn owl chicks. The utility of avian coagulation tests for diagnosing AR exposure is promising, yet there remains a need to establish species specific reference values and standardize assay methodologies among testing facilities.

Science of the Total Environment↗
USGS2020

Methylmercury exposure in wildlife: A review of the ecological and physiological processes affecting contaminant concentrations and their interpretation

Exposure to methylmercury (MeHg) can result in detrimental health effects in wildlife. With advances in ecological indicators and analytical techniques for measurement of MeHg in a variety of tissues, numerous processes have been identified that can influence MeHg concentrations in wildlife. This review presents a synthesis of theoretical principals and applied information for measuring MeHg exposure and interpreting MeHg concentrations in wildlife. Mercury concentrations in wildlife are the net result of ecological processes influencing dietary exposure combined with physiological processes that regulate assimilation, transformation, and elimination. Therefore, consideration of both physiological and ecological processes should be integrated when formulating biomonitoring strategies. Ecological indicators, particularly stable isotopes of carbon, nitrogen, and sulfur, compound-specific stable isotopes, and fatty acids, can be effective tools to evaluate dietary MeHg exposure. Animal species differ in their physiological capacity for MeHg elimination, and animal tissues can be inert or physiologically active, act as sites of storage, transformation, or excretion of MeHg, and vary in the timing of MeHg exposure they represent. Biological influences such as age, sex, maternal transfer, and growth or fasting are also relevant for interpretation of tissue MeHg concentrations. Wildlife tissues that represent current or near-term bioaccumulation and in which MeHg is the predominant mercury species (such as blood and eggs) are most effective for biomonitoring ecosystems and understanding landscape drivers of MeHg exposure. Further research is suggested to critically evaluate the use of keratinized external tissues to measure MeHg bioaccumulation, particularly for less-well studied wildlife such as reptiles and terrestrial mammals. Suggested methods are provided to effectively use wildlife for quantifying patterns and drivers of MeHg bioaccumulation over time and space, as well as for assessing the potential risk and toxicological effects of MeHg on wildlife.

Science of the Total Environment↗
USGS2021

Evidence for continental-scale dispersal of antimicrobial resistant bacteria by landfill-foraging gulls

Anthropogenic inputs into the environment may serve as sources of antimicrobial resistant bacteria and alter the ecology and population dynamics of synanthropic wild animals by providing supplemental forage. In this study, we used a combination of phenotypic and genomic approaches to characterize antimicrobial resistant indicator bacteria, animal telemetry to describe host movement patterns, and a novel modeling approach to combine information from these diverse data streams to investigate the acquisition and long-distance dispersal of antimicrobial resistant bacteria by landfill-foraging gulls. Our results provide evidence that gulls acquire antimicrobial resistant bacteria from anthropogenic sources, which they may subsequently disperse across and between continents via migratory movements. Furthermore, we introduce a flexible modeling framework to estimate the relative dispersal risk of antimicrobial resistant bacteria in western North America and adjacent areas within East Asia, which may be adapted to provide information on the risk of dissemination of other organisms and pathogens maintained by wildlife through space and time.

Article↗
USGS2015

Emerging technologies to conserve biodiversity

Technologies to identify individual animals, follow their movements, identify and locate animal and plant species, and assess the status of their habitats remotely have become better, faster, and cheaper as threats to the survival of species are increasing. New technologies alone do not save species, and new data create new problems. For example, improving technologies alone cannot prevent poaching: solutions require providing appropriate tools to the right people. Habitat loss is another driver: the challenge here is to connect existing sophisticated remote sensing with species occurrence data to predict where species remain. Other challenges include assembling a wider public to crowdsource data, managing the massive quantities of data generated, and developing solutions to rapidly emerging threats.

Trends in Ecology and Evolution↗
USGS2007

Effects of supplemental feeding on gastrointestinal parasite infection in Rocky Mountain Elk (Cervus elaphus): Preliminary observations

The effects of management practices on the spread and impact of parasites and infectious diseases in wildlife and domestic animals are of increasing concern worldwide, particularly in cases where management of wild species can influence disease spill-over into domestic animals. In the Greater Yellowstone Ecosystem, USA, winter supplemental feeding of Rocky Mountain elk ( Cervus elaphus ) may enhance parasite and disease transmission by aggregating elk on feedgrounds. In this study, we tested the effect of supplemental feeding on gastrointestinal parasite infection in elk by comparing fecal egg/oocyst counts of fed and unfed elk. We collected fecal samples from fed and unfed elk at feedground and control sites from January to April 2006, and screened all samples for parasites. Six different parasite types were identified, and 48.7% of samples were infected with at least one parasite. Gastrointenstinal (GI) nematodes (Nematoda: Strongylida), Trichuris spp., and coccidia were the most common parasites observed. For all three of these parasites, fecal egg/oocyst counts increased from January to April. Supplementally fed elk had significantly higher GI nematode egg counts than unfed elk in January and February, but significantly lower counts in April. These patterns suggest that supplemental feeding may both increase exposure and decrease susceptibility of elk to GI nematodes, resulting in differences in temporal patterns of egg shedding between fed and unfed elk.

Wyoming↗
USGS2017

The Snowmastodon Project

Studies of terrestrial biotic and environmental dynamics of the last interglacial period, Marine Oxygen Isotope Stage (MIS) 5, provide insight into the effects of long-term climate change on Pleistocene ecosystems. In North America, however, there are relatively few fossil sites that definitively date to MIS 5. Even fewer contain multiple ecosystem components (vertebrates, invertebrates, plants) that have been studied in detail, and none are located at high elevation. Thus, our view of North American ecosystems during MIS 5 is, at best, an incomplete composite view, and alpine ecosystems are entirely undocumented. The Ziegler Reservoir fossil site allows us to begin filling these gaps. Discovered on October 14, 2010 by a construction crew while enlarging a small reservoir near Snowmass Village, Colorado (USA), the site is situated high in the Rocky Mountains at an elevation of ~ 2705 m. Initial excavations exposed a series of stacked fossil ecosystems, including abundant faunal and floral components. Subsequent work revealed an exceptionally diverse biota composed of nearly 6000 large bones of late Pleistocene megafauna, including mastodons, mammoths, ground sloths, horses, camels, deer, bison, black bear, coyotes, and big horn sheep. This collection is complemented by more than 200 bones from at least 40 species of small animals including otters, muskrats, minks, rabbits, beavers, frogs, lizards, snakes, fish, and birds, and more than 20,000 salamander bones. Geomorphic evidence and multiple dating techniques show that the small, ridge-top basin containing the site was formed by a lateral lobe of a valley glacier that filled, and ultimately overtopped, the Snowmass Creek drainage during the Bull Lake glaciation (MIS 6). When the glacier receded, a lake that occupied the basin began to fill slowly with what is hypothesized to be eolian sediment and occasional input from slope failures of the impounding moraine. As sedimentation continued, the lake transformed first into a shallow pond, then a marsh, and later an alpine meadow. In all, the Ziegler Reservoir sedimentary record spans the time encompassed by the end of MIS 6, all of MIS 5 and MIS 4, and the earliest part of MIS 3. MIS 5e, which is considered to be the peak warmth of the last interglacial period, is especially well represented. Preservation of organic material at the Ziegler Reservoir fossil site is exceptional. Even after more than 100,000 years of burial, sedge and willow leaves were still green, mollusks and gastropods showed color, beetle parts remained iridescent, fossil conifer cones were intact, and an entire beach of 20-meter-long driftwood logs was found intact. The exquisite preservation allowed for detailed analysis of pollen, plant macrofossils, conifer cones, and fossil wood, as well as insects, chironomids, mollusks, ostracodes, and other invertebrates — all in addition to the spectacular faunal remains. This special volume of Quaternary Research represents a comprehensive scientific report of “The Snowmastodon Project,” as the investigations at the Ziegler Reservoir fossil site came to be known. Summarizing the work of scientists from more than 20 institutions, the volume details the environments in which the animals lived, provides insight into how they died, and forms the foundation of our understanding of alpine ecosystem dynamics during the last interglacial period in the Rocky Mountains.

Quaternary Research↗