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USGS1995

Lake trout ( Salvelinus namaycush ) populations in Lake Superior and their restoration in 1959-1993

Naturally-reproducing populations of lake trout ( Salvelinus namaycush ) have been reestablished in most of Lake Superior, but have not been restored to 1929-1943 average abundance. Progress toward lake trout restoration in Lake Superior is described, management actions are reviewed, and the effectiveness of those actions is evaluated; especially stocking lake trout as a tool for building spawning stocks, and subsequently, populations of wild recruits. Widespread destruction of lake trout stocks in the 1950s due to an intense fishery and sea lamprey ( Petromyzon marinus ) predation resulted in lower overall phenotypic diversity than was previously present. Stocking of yearling lake trout, begun in the 1950s, produced high densities of spawners that reproduced wherever inshore spawning habitat was widespread. Sea lampreys were greatly reduced, beginning in 1961, using selective chemical toxicants and barrier dams, but continue to exert substantial mortality. Fishery regulation was least effective in Wisconsin, where excessive gillnet effort caused high by-catch of lake trout until 1991, and in eastern Michigan, where lake trout restoration was deferred in favor of a tribal fishery for lake whitefish ( Coregonus clupeaformis ) in 1985. Restoration of stocks was quicker in offshore areas where remnant wild lake trout survived and fishing intensity was low, and was slower in inshore areas where stocked lake trout reproduced successfully and fishing intensity was high. Inshore stocks of wild lake trout are currently about 61 % of historic abundance in Michigan and 53% in Wisconsin. Direct comparison of modern and historic abundances of inshore lake trout stocks in Minnesota and Ontario is impossible due to lack of historic stock assessment data. Stocks in Minnesota are less abundant at present than in Michigan or Wisconsin, and stocks in Ontario are similar to those in Michigan. Further progress in stock recovery can only be achieved if sea lampreys are depressed and if fisheries are constrained further than at present.

Journal of Great Lakes Research↗

USGS2018

Evaluation of anal fin spines, otoliths, and scales for estimating age and back-calculated lengths of yellow perch in southern Green Bay

Southern Green Bay supports important fisheries for yellow perch Perca flavescens and valid estimates of age structure and growth are critical to effective management. Anal fin spines and scales are used by the Wisconsin Department of Natural Resources for age estimation, but these structures may provide lower precision and accuracy than otoliths. The primary objective of our assessment was to determine if age estimates, among-reader precision, and mean back-calculated total lengths (TLs) at age differed among scales, anal fin spines, and otoliths. Ages estimated from anal fin spines were more precise than scale ages, were as precise as otolith-based ages, and generally agreed with consensus ages estimated from sectioned otoliths. Relationships between TL and radii of calcified structures were linear for scales, anal spines, and otoliths along two different transects. Mean back-calculated TLs were generally similar between intercept-corrected direct proportion (ICDP) and linear regression (LR) models, but otolith-based direct proportion models (no intercept correction) generally provided higher back-calculated mean TLs at ages 1 and 2 than ICDP and LR models. Mean back-calculated TLs at age estimated from whole otoliths were higher than estimates for other structures; but differences among anal fin spines, scales, and sectioned otoliths were <10 mm. Our results suggest biologists have little to gain by switching to otoliths when assessing age structure and growth for this fast-growing yellow perch population with relatively few fish ≥age 6, but additional analyses are warranted for slower-growing perch populations in the Great Lakes where older fish are more common.

Wisconsin↗

USGS2022

Cryptic population decrease due to invasive species predation in a long-lived seabird supports need for eradication

Invasive species are one of the greatest drivers of biodiversity loss worldwide, and the eradication of invasive species from islands is a highly efficient management strategy. Because eradication operations require large financial investments, uncertainty over the magnitude of impacts of both invasive species and their removal can impede the willingness of decision makers to invest in eradication. Such uncertainty is prevalent for long-lived species that display an inherent lag between life stages affected by invasive species and those used for population status assessments. Albatrosses are amongst the longest-living bird species and are threatened on land by invasive species and at sea by industrial fisheries. As in many seabird species, usually only a segment of the population (breeding adults) is used for status assessments, making it difficult to assess albatross population trends and the potential benefit of conservation action, such as the management of predatory invasive species. We used population monitoring and mark-recapture data to estimate the past population trajectory of the critically endangered Tristan albatross Diomedea dabbenena by accounting for unobservable birds at sea in an integrated population model. We then projected the future population trajectory of Tristan albatrosses for scenarios with or without predation by invasive house mice Mus musculus on their main breeding site, Gough Island. The adult breeding population remained stable between 2004 and 2021, but breeding success was low (31%) and our model indicated that the total population (including unobservable immature birds) decreased from a median estimate of 9,795 to 7,752 birds. Eradicating invasive mice leading to a two-fold increase in breeding success would result in a 1.8–7.6 times higher albatross population by 2050 (median estimate 10,352 individuals) than without this intervention. Low reproductive output for long-lived species may lead to a cryptic population decrease, which can be obscured from readily available counts of breeding pairs by changes in the population structure. Mouse eradication is necessary to halt the ongoing population decrease of the Tristan albatross, even if this decrease is not yet apparent in the breeding population size.

Gough Island↗

USGS2026

Disease-associated mortality drives reduction in Yukon River Chinook salmon escapement: A novel method for quantifying the negative impacts of ‘misfit’ parasites to improve fisheries management

Parasites can suppress host populations through parasite-induced mortality. However, the negative effects of parasites are difficult to measure in wild populations and we have few tools for quantifying the magnitude of parasite-induced mortality. This is especially true for many ‘misfit’ parasites that do not fit into standard classifications (e.g. fungal-like parasites and myxozoans). As such, we are limited in our ability to include the effects of parasites in fish and wildlife management strategies. Chinook salmon ( Oncorhynchus tshawytscha ) are a species of immense cultural and ecological significance but populations are declining across much of their range. In the Yukon River, Alaska, USA, episodic outbreaks of the ichthyosporean parasite Ichthyophonus have been linked to declines, but population-level effects of Ichthyophonus on Yukon Chinook salmon remain largely unknown. We developed a novel model that leverages changes in parasite intensity distributions to quantify the magnitude of disease-induced mortality occurring in host populations. We used it to address two questions to inform management of Yukon Chinook salmon: (i) Is parasite-induced mortality occurring in Chinook salmon and at what magnitude? (ii) What are the drivers of spatio-temporal variability in parasite-induced mortality? Using 3 years of surveys, we quantified the evidence for the presence, magnitude, and variability in Ichthyophonus -induced mortality in Chinook salmon. Our model predicted that Ichthyophonus was responsible for between 8% and 15% mortality of the migrating Chinook salmon population prior to reaching the Canadian border and could describe nearly 35% of unaccounted for mortality at the border. The model predicted that variability in mortality among years could largely be explained by differences in parasite acquisition in the marine environment rather than differences in infection dynamics in the river. Synthesis and applications . Alaska Department of Fish and Game is implementing an annual monitoring program at the mouth of the Yukon River where our model will estimate the proportion of fish at risk from parasite-induced mortality to inform annual management. Moreover, the model is broadly applicable to other fungal-like and myxozoan parasites of conservation concern, where improved estimates of parasite-induced mortality could be used to predict parasite suppression of wild and managed host populations.

Alaska↗

USGS2016

Telemetry narrows the search for sea lamprey spawning locations in the St. Clair-Detroit River System

Adult sea lamprey ( Petromyzon marinus ) abundance in Lake Erie has remained above targets set by fishery managers since 2005, possibly due to increased recruitment in the St. Clair-Detroit River System (SCDRS). Sea lamprey recruitment in the SCDRS poses an enormous challenge to sea lamprey control and assessment in Lake Erie because the SCDRS contains no dams to facilitate capture and discharge is at least an order of magnitude larger in the SCDRS than most other sea lamprey-producing tributaries in the Great Lakes. As a first step toward understanding population size, spatial distribution, and spawning habitat of adult sea lampreys in the SCDRS, we used acoustic telemetry to determine where sea lampreys ceased migration (due to spawning, death, or both) among major regions of the SCDRS. All tagged sea lampreys released in the lower Detroit River ( N = 27) moved upstream through the Detroit River and entered Lake St. Clair. After entering Lake St. Clair, sea lampreys entered the St. Clair River ( N = 22), Thames River ( N = 1), or were not detected again ( N = 4). Many sea lampreys (10 of 27) were last observed moving downstream (“fallback”) but we were unable to determine if those movements occurred before or after spawning, or while sea lampreys were dead or alive. Regardless of whether estimates of locations where sea lampreys ceased migration were based on the most upstream region occupied or final region occupied, most sea lampreys ceased migration in the St. Clair River or Lake St. Clair. Results suggest that spawning and rearing in the St. Clair River could be an important determinant of sea lamprey recruitment in the SCDRS and may direct future assessment and control activities in that system.

Michigan, Ontario↗

USGS2021

How many Ciscoes are needed for stocking in the Laurentian Great Lakes?

Historically, Cisco Coregonus artedi and deepwater ciscoes Coregonus spp. were the most abundant and ecologically important fish species in the Laurentian Great Lakes, but anthropogenic influences caused nearly all populations to collapse by the 1970s. Fishery managers have begun exploring the feasibility of restoring populations throughout the basin, but questions regarding hatchery propagation and stocking remain. We used historical and contemporary stock-recruit parameters previously estimated for Ciscoes in Wisconsin waters of Lake Superior, with estimates of age-1 Cisco rearing habitat (broadly defined as total ha ≤ 80 m depth) and natural mortality, to estimate how many fry (5.5 months post-hatch), fall fingerling (7.5 months post-hatch), and age-1 (at least 12 months post-hatch) hatchery-reared Ciscoes are needed for stocking in the Great Lakes to mimic recruitment rates in Lake Superior, a lake that has undergone some recovery. Estimated stocking densities suggested that basin-wide stocking would require at least 0.641-billion fry, 0.469-billion fall fingerlings, or 0.343-billion age-1 fish for a simultaneous restoration effort targeting historically important Cisco spawning and rearing areas in Lakes Huron, Michigan, Erie, Ontario, and Saint Clair. Numbers required for basin-wide stocking were considerably greater than current or planned coregonine production capacity, thus simultaneous stocking in the Great Lakes is likely not feasible. Provided current habitat conditions do not preclude Cisco restoration, managers could maximize the effectiveness of available production capacity by concentrating stocking efforts in historically important spawning and rearing areas, similar to the current stocking effort in Saginaw Bay, Lake Huron. Other historically important Cisco spawning and rearing areas within each lake (listed in no particular order) include: (1) Thunder Bay in Lake Huron, (2) Green Bay in Lake Michigan, (3) the islands near Sandusky, Ohio, in western Lake Erie, and (4) the area near Hamilton, Ontario, and Bay of Quinte in Lake Ontario. Our study focused entirely on Ciscoes but may provide a framework for describing future stocking needs for deepwater ciscoes.

Great Lakes↗

USGS2022

Contemporary spatial extent and environmental drivers of larval coregonine distributions across Lake Ontario

Coregonine fishes are important to Laurentian Great Lakes food webs and fisheries and are central to basin-wide conservation initiatives. In Lake Ontario, binational management objectives include conserving and restoring spawning stocks of cisco ( Coregonus artedi ) and lake whitefish ( C. clupeaformis ), but the spatial extent of contemporary coregonine spawning habitat and the environmental factors regulating early life success are not well characterized. In Spring 2018, we conducted a binational ichthyoplankton assessment to describe the spatial extent of coregonine spawning habitat across Lake Ontario. We then quantified the relative importance of a suite of biophysical variables hypothesized to influence coregonine early life success using generalized additive mixed models and multimodel inference. Between April 10 and May 14, we conducted 1,092 ichthyoplankton tows and captured 2,350+ coregonine larvae across 17 sampling areas, predominantly within embayments. Although 95% of catches were in the eastern basin, coregonine larvae were also found in historical south shore spawning areas. Most coregonine larvae were cisco; <6% were lake whitefish. Observed catches of both species across sampling areas were strongly and similarly associated with ice cover duration, but the importance of site-specific characteristics varied, such as distance to shore and site depth for cisco and lake whitefish, respectively. These results suggest that regional-scale climatic drivers and local environmental habitat characteristics interact to regulate early life stage success. Furthermore, strong regional and cross-species variation in larval distributions emphasize the importance of lake-wide assessments for monitoring both the current eastern basin populations and potential expansions into western Lake Ontario habitats.

Lake Ontario↗

USGS1985

Effects of contaminants on toxicity of the lampricides TFM and Bayer 73 to three species of fish

Waters in the Great Lakes basin contain more than 400 contaminant chemicals that potentially affect fishery resources, commerce, and human inhabitants. We determined in the laboratory the effects of selected contaminants on the toxicity of the widely used lampricides TFM (3-trifluoromethyl-4-nitrophenol) and Bayer 73 (2′,5-dichloro-4′-nitrosalicylanilide) to three species of fish—rainbow trout ( Salmo gairdneri ), white sucker ( Catostomus commersoni ), and fathead minnow ( Pimephales promelas ). The fish were exposed to paired mixtures of lampricides and selected contaminants in standardized, acute static toxicity tests to determine the resulting type of response—less than additive, additive, or greater than additive (synergistic). As expected, the toxicities of combinations of lampricides with organic pesticides, metal, industrial or municipal pollutants, and tannic acid were mostly additive. However, the toxicity of a combination of TFM, Delnav, and malathion was synergistic, and extremely small quantities of each chemical became lethal when mixed. The concentration that produced 50% mortality was 1.64 mg/L for TFM alone but only 0.041 mg/L for TFM with the pesticides. Toxicities of the pesticides in the combination also increased commensurately. The triple combination of chemicals produced extraordinary synergism and effectively demonstrated the hazards that may result if certain chemical combinations occur in the aquatic environment. However, synergism is not the only kind of toxic action that produces hazards to aquatic organisms. All three types of toxic action are of concern because toxic units produced by contaminant chemicals add to the toxic units of applied management chemicals. Since the toxicity of the majority of chemical combinations is simply additive, this cumulative toxic action contributes more total units to aquatic environments than the extreme actions of less than additive and synergism. The toxicity of the lampricide TFM, as well as other management chemicals, is reinforced by the presence of any contaminant that contributes additional units of toxicity. Therefore, all types of cumulative toxic action should be of concern to people and agencies involved with protecting the environment.

Journal of Great Lakes Research↗

USGS2016

Quantifying resilience

The biosphere is under unprecedented pressure, reflected in rapid changes in our global ecological, social, technological and economic systems. In many cases, ecological and social systems can adapt to these changes over time, but when a critical threshold is surpassed, a system under stress can undergo catastrophic change and reorganize into a different state. The concept of resilience, introduced more than 40 years ago in the ecological sciences, captures the behaviour of systems that can occur in alternative states. The original definition of resilience forwarded by Holling ( 1973 ) is still the most useful. It defines resilience as the amount of disturbance that a system can withstand before it shifts into an alternative stable state. The idea of alternative stable states has clear and profound implications for ecological management. Coral reefs, for example, are high-diversity systems that provide key ecosystem services such as fisheries and coastal protection. Human impacts are causing significant, ongoing reef degradation, and many reefs have shifted from coral- to algal-dominated states in response to anthropogenic pressures such as elevated water temperatures and overfishing. Understanding and differentiating between the factors that help maintain reefs in coral-dominated states vs. those that facilitate a shift to an undesired algal-dominated state is a critical step towards sound management and conservation of these, and other, important social–ecological systems. Resilience has gained popularity among both academicians and laypeople, as a term meant to describe a systems’ ability to withstand disturbance. Resilience has become a buzzword in the last decade, as shown by its increasing appearance in calls for research proposals and scientific citation data bases. The term resilience has in many cases lost the clarity of the original definition and in fact is frequently used in a manner in direct opposition to the original definition. Many current uses of the concept are loose and incorrect. The term is becoming increasingly used in a normative sense (Brand & Jax 2007 ), as if resilience were a desirable quality of systems. However, even systems in highly undesirable states, such as macro-algae dominated reefs, or city cores in poverty traps, may be highly resilient, which is to say they withstand attempts to transform them into different (desirable) states. Operationalizing the concept of resilience for application and management has been difficult. Misuse of the term can have significant negative impacts, because resilience is being used to help guide responses to natural disasters and to assess the sustainability of ecosystems and urban systems and has been driving international research priorities. Resilience has been argued to be a basic emergent property of systems, a process or a rate. We focus on the original concept as described by Holling, which is that of an emergent system property; when a system is in a desirable state and managers wish to enhance resilience, or when the system is in an undesirable state and managers wish to erode resilience and foster a transformation to an alternative state. Fostering or eroding resilience is a process. When a system is perturbed but resilience is not exceeded, then the recovery can be measured as a rate. Several frameworks to operationalize resilience have been proposed. A decade ago, a special feature focused on quantifying resilience was published in the journal Ecosystems (Carpenter, Westley & Turner 2005 ). The approach there was towards identifying surrogates of resilience, but few of the papers proposed quantifiable metrics. Consequently, many ecological resilience frameworks remain vague and difficult to quantify, a problem that this special feature aims to address. However, considerable progress has been made during the last decade (e.g. Pope, Allen & Angeler 2014 ). Although some argue that resilience is best kept as an unquantifiable, vague concept (Quinlan et al . 2016 ), to be useful for managers, there must be concrete guidance regarding how and what to manage and how to measure success (Garmestani, Allen & Benson 2013 ; Spears et al . 2015 ). Ideas such as ‘resilience thinking’ have utility in helping stakeholders conceptualize their systems, but provide little guidance on how to make resilience useful for ecosystem management, other than suggesting an ambiguous, Goldilocks approach of being just right (e.g. diverse, but not too diverse; connected, but not too connected). Here, we clarify some prominent resilience terms and concepts, introduce and synthesize the papers in this special feature on quantifying resilience and identify core unanswered questions related to resilience.

Journal of Applied Ecology↗

USGS1992

Lake trout spawning habitat in the Six Fathom Bank-Yankee Reef lake trout sanctuary, Lake Huron

Attempts to reestablish self-sustaining stocks of lake trout ( Salvelinus namaycush ) in the lower four Great Lakes, where the species was extinguished in the 1950s and 1960s, have been largely unsuccessful. To avoid many of the problems believed to be contributing to this failure, the fishery management community recently established several sanctuaries in the offshore waters of the Great Lakes where the development and protection of self-sustaining stocks of lake trout would be a primary management objective. One of these, the Six Fathom Bank-Yankee Reef sanctuary, was created in the south-central portion of Lake Huron. This sanctuary covers 168,000 ha and includes the shallower portions of the Six Fathom and Ipperwash scarps, which are major bathymetric features in the southern half of the lake. Historical accounts describe Six Fathom Bank as the most important lake trout spawning ground in the lake. Here we present the results of lake bed surveys conducted in the sanctuary with side-scan sonar, underwater videocamera systems, and a small research submarine. Our observations of the lake bed are consistent with what is known of the bedrock stratigraphy, glacial history, and karst geomorphology of the Lake Huron basin. Most of the loose rock we found seemed to be derived from local carbonate bedrock formations, although non-carbonate rock probably from Precambrian sources to the north was also present in some areas. Much of the bedrock and loose rock displayed karst solution features described for the Bruce Peninsula on the Ontario shoreline. Our surveys revealed substantial areas of lake bed at water depths of 20–36 m that resembled suitable spawning and fry production habitat for the shallow-water strains of lake trout that are the focus of the rehabilitation effort. Low mid-lake nutrient levels documented recently by others and the extremely high abundance of Mysis relicta (an important item in the diet of young lake trout) that we documented on Yankee Reef also contributed to our evaluation of the sanctuary as a site with high potential to support a self-sustaining population of lake trout.

Journal of Great Lakes Research↗

USGS2020

Estimating population-specific predation effects on Chinook salmon via data integration

Recent success in the conservation of many marine mammals has resulted in new management challenges due to increasing conflict with fisheries. Increasing predation by pinnipeds on threatened salmon is of particular concern. Seemingly, pinniped conservation is now in conflict with the recovery of threatened salmon, creating a dilemma for managers. We use the Lower Columbia River as a case study for examining the relationship between seasonal California sea lion Zalophus californianus abundance and survival of threatened salmon. To quantify mortality associated with increasing sea lion abundance, we examined the effect of seasonal sea lion abundance on adult Chinook salmon Oncorhynchus tshawytscha survival during migrations through the Lower Columbia River. We integrated data on survival with data on population-specific migration timing, allowing quantification of the relationship between sea lion abundance and survival in 18 populations of spring–summer Chinook salmon listed as Threatened or Endangered under the U.S. Endangered Species Act. Of the 18 populations examined, earlier migrating populations experienced lower survival in association with increased exposure to higher sea lion abundance. We estimated that in years with high sea lion abundance, the nine earliest-migrating populations experienced an additional 21.1% (95% CI = 16.3–26.1) mortality compared to years with baseline sea lion abundance, while the nine latest migrating populations experienced an additional 10.1% (7.5–13.0). Synthesis and applications . Integrating datasets on seasonal survival and migration timing made it possible for us to estimate population-specific mortality associated with increased sea lion abundance in the Lower Columbia River. This information could not be produced from any one dataset, highlighting the utility of data integration approaches. The mortality experienced by early migrating Chinook salmon suggests the potential for demographic and evolutionary consequences. Management actions such as hazing, relocating, or removing individuals that are frequent predators on salmon have been proposed. Identifying the management actions that will allow for socially and legally acceptable trade-offs between multiple conservation and other social values will be facilitated by development of explicit multi-species management frameworks. Continued monitoring will help to reduce the substantial uncertainty about the effect of pinnipeds on salmon and the predicted outcomes of alternative management actions.

Oregon, Washington↗

USGS2015

Effects of gill-net trauma, barotrauma, and deep release on postrelease mortality of Lake Trout

Unaccounted postrelease mortality violates assumptions of many fisheries studies, thereby biasing parameter estimates and reducing efficiency. We evaluated effects of gill-net trauma, barotrauma, and deep-release treatment on postrelease mortality of lake trout Salvelinus namaycush . Lake trout were captured at depths up to 65 m with gill nets in Priest Lake, Idaho, and held in a large enclosure for 10–12 d. Postrelease mortality was the same for surface-release–and deep-release–treated fish (41%). Mixed-effects logistic regression models were used to evaluate effects of intrinsic and environmental factors on the probability of mortality. Presence of gill-net trauma and degree of barotrauma were associated with increased probability of postrelease mortality. Smaller fish were also more likely to suffer postrelease mortality. On average, deep-release treatment did not reduce postrelease mortality, but effectiveness of treatment increased with fish length. Of the environmental factors evaluated, only elapsed time between lifting the first and last anchors of a gill-net gang (i.e., lift time) was significantly related to postrelease mortality. Longer lift times, which may allow ascending lake trout to acclimate to depressurization, were associated with lower postrelease mortality rates. Our study suggests that postrelease mortality may be higher than previously assumed for lake trout because mortality continues after 48 h. In future studies, postrelease mortality could be reduced by increasing gill-net lift times and increasing mesh size used to increase length of fish captured.

Idaho↗

USGS2022

Rotenone use and subsequent prey loss lowers Osprey fledging rates via brood reduction

Fisheries managers used the fish toxicant rotenone to eradicate an undesirable brown bullhead ( Ameiurus nebulosus ) population and all other fish species at Hyatt Reservoir, Oregon, on 12 October 1989. This 4-yr study (1988–1990, 1992) compared effects of that rotenone project on Ospreys ( Pandion haliaetus ) nesting at Hyatt Reservoir and nearby Howard Prairie Reservoir (untreated reference)—the latter a reservoir where both brown bullheads and hatchery-released rainbow trout ( Oncorhynchus mykiss ) prospered. Because Hyatt Reservoir was treated after Osprey fall migration in 1989, the first 2 yr (1988 and 1989) yielded pretreatment information: number of Osprey pairs was unchanged and reproductive rates were similar and consistent at the two reservoirs. Yearling fish (200–250 mm) were restocked at Hyatt Reservoir in the spring of 1990 and Ospreys returned each year following rotenone treatment, with no decline in the number of occupied or active nests. The negative effect of the rotenone treatment on Ospreys was short-term, resulting in reduced reproductive rates (young/occupied nest, young/active nest, and young/successful nest) during the first nesting season posttreatment, although hatching rates were not affected. Osprey dive success and prey delivery rates declined sharply in 1990, leading to competition for food among siblings and brood reduction. Osprey reproductive rates and prey delivery rates at Hyatt Reservoir in both 1990 and 1992 remained below the extremely high pretreatment rates, but within the range required for population stability. Serious adverse effects of the fish loss on Osprey reproduction were minimized by: (1) the delay of the rotenone application until after breeding season, (2) the restocking of the treated reservoir in the following spring with some larger (yearling) fish (though the timing was late), (3) the maintenance of a supplemental feeding program for a nesting pair of Bald Eagles ( Haliaeetus leucocephalus ), which minimized kleptoparasitism on Ospreys, and perhaps most important (4) the presence of nearby water bodies, where Osprey obtained some fish in the 1990 and 1992 breeding seasons.

Oregon↗

USGS2019

Trends and carrying capacity of sea otters in Southeast Alaska

Sea otter populations in Southeast Alaska (SEAK) have increased dramatically from fewer than 500 translocated animals in the late 1960s. The recovery of sea otters to ecosystems from which they had been absent has affected coastal food webs, including commercially important fisheries, and thus information on expected growth and equilibrium abundances can help inform resource management. We compile available survey data for SEAK and fit a Bayesian state-space model to estimate past trends and current abundance. Our model improves upon previous analyses by partitioning and quantifying sources of estimation error, accounting for over-dispersion of aerial count data, and providing realistic measurements of uncertainty around point estimates of abundance at multiple spatial scales. We also provide the first estimates of carrying capacity (K) for SEAK, at both regional and sub-regional scales, and analyze growth rates, current population status and expected future trends. At the regional scale, the population increased from 13,221 otters in 2003 (95% credible interval 9,990 – 16,828) to 25,584 otters in 2011 (CI95 18,739 – 33,163). The average annual growth rate in southern SEAK (7.8%) was higher than northern SEAK (2.7%); however, growth varied at the sub-regional scale and there was a negative relationship between growth rates and the number of years sea otters were present in an area. Local populations vary in terms of current densities and expected future growth: the mean estimated density at K was 4.2 (1.58) sea otters per km2 of habitat (defined as the sub-tidal benthos between 0-40m depth) and current densities correspond on average to 50% of projected equilibrium values (range = 1% to 97%) with the earliest-colonized sub-regions tending to be closer to K. Assuming a similar range of equilibrium densities for currently un-occupied habitats in SEAK, the projected value of K for all of SEAK is 74,650 sea otters (CI95 =36,778–136,506). Future analyses can improve upon the precision of K estimates by employing more frequent surveys at index sites and incorporating environmental covariates into the process model to generate habitat-specific estimates of equilibrium density.

Alaska↗

USGS2021

Across borders: External factors and prior behaviour influence North Pacific albatross associations with fishing vessels

Understanding encounters between marine predators and fisheries across national borders and outside national jurisdictions offers new perspectives on unwanted interactions to inform ocean management and predator conservation. Although seabird–fisheries overlap has been documented at many scales, remote identification of vessel encounters has lagged because vessel movement data often are lacking. Here, we reveal albatrosses–fisheries associations throughout the North Pacific Ocean. We identified commercial fishing operations using Global Fishing Watch data and algorithms to detect fishing vessels. We compiled GPS tracks of adult black-footed Phoebastria nigripes and Laysan Phoebastria immutabilis albatrosses, and juvenile short-tailed albatrosses Phoebastria albatrus . We quantified albatrosses-vessel encounters based on the assumed distance that birds perceive a vessel (≤30 km), and associations when birds approached vessels (≤3 km). For each event we quantified bird behaviour, environmental conditions and vessel characteristics and then applied Boosted Regression Tree models to identify drivers and the duration of these associations. In regions of greater fishing effort short-tailed and Laysan albatrosses associated with fishing vessels more frequently. However, fishing method (e.g. longline, trawl) and flag nation did not influence association prevalence nor the duration short-tailed albatrosses attended fishing vessels. Laysan albatrosses were more likely to approach longer vessels. Black-footed albatrosses were the most likely to approach vessels (61.9%), but limited vessel encounters ( n = 21) prevented evaluation of meaningful explanatory models for this species of high bycatch concern. Temporal variables (time of day and month) and bird behavioural state helped explain when short-tailed albatrosses were in close proximity to a vessel, but environmental conditions were more important for explaining interaction duration. Laysan albatrosses were more likely to associate with vessels while searching and during the last 60% (by time) of their trips. Our results provide specific species–fisheries insight regarding contributing factors of high-risk associations that could lead to bycatch of albatrosses within national waters and on the high seas. Policy implications . Given the availability of Global Fishing Watch data, our analysis can be applied to other marine predators—if tracking data are available—to identify spatio-temporal patterns, vessel specific attributes and predator behaviours associated with fishing vessel associations, thus enabling predictive modelling and targeted mitigation measures.

Journal of Applied Ecology↗

USGS2022

Population dynamics of Yellowstone Cutthroat Trout in Henrys Lake, Idaho

Yellowstone Cutthroat Trout (YCT) Oncorhynchus clarkii bouvieri is a species with significant ecological and recreational value. In many YCT fisheries, managers are tasked with balancing angler expectations and fish conservation. Henrys Lake supports a popular trophy trout fishery, but the increase of nonnative Utah Chub Gila atraria has caused concern for YCT. We summarized long-term trends in abundance, length structure, body condition, and growth of YCT to evaluate the effect of Utah Chub. Additionally, we investigated abiotic and biotic factors influencing YCT. We examined archived hard structures to provide a comprehensive evaluation of changes in age and growth of YCT in the system. We used stocking records and catch rates of Utah Chub and trout in Henrys Lake as covariates to explain changes in YCT catch rates and growth. Catch rates varied from 1.5 to 15.4 YCT per net night during the 2002 to 2020 sampling period, but we did not identify consistent patterns. Length structure was consistently dominated by stock- to quality-length fish, and we captured few fish >600 mm in total length. Relative weight of YCT was decreased from a mean ± standard deviation (SD) of 115.9 ± 16.5 in 2004 to 93.2 ± 8.2 in 2020. The age of YCT varied between 1 and 11 years; fish that we captured during 2010 to 2020 were the oldest. The majority of fish that we sampled were age 4 and younger. Total annual mortality of age-2 and older YCT was higher than other Cutthroat Trout populations (i.e., 0.70 during 2002 to 2010 and 0.60 during 2011 to 2020). Based on regression models, we identified positive relationships between catch rates of YCT, Brook Trout Salvelinus fontinalis, and Rainbow Trout Oncorhynchus mykiss × YCT hybrid trout. We observed negative relationships between growth of YCT and abundance of Utah Chub and Brook Trout. Although we identified negative relationships, YCT growth in recent decades is as fast as or faster than earlier time periods. Results from this research suggest that major changes in YCT population dynamics are not evident over the last 20 years. This study provides insight into the factors influencing an adfluvial trout population. In particular, results from this research may be useful for managers of systems where Utah Chub have been introduced.

Idaho↗

USGS2013

Reliability of fish size estimates obtained from multibeam imaging sonar

Multibeam imaging sonars have considerable potential for use in fisheries surveys because the video-like images are easy to interpret, and they contain information about fish size, shape, and swimming behavior, as well as characteristics of occupied habitats. We examined images obtained using a dual-frequency identification sonar (DIDSON) multibeam sonar for Atlantic sturgeon Acipenser oxyrinchus oxyrinchus , striped bass Morone saxatilis , white perch M. americana , and channel catfish Ictalurus punctatus of known size (20–141 cm) to determine the reliability of length estimates. For ranges up to 11 m, percent measurement error (sonar estimate – total length)/total length × 100 varied by species but was not related to the fish's range or aspect angle (orientation relative to the sonar beam). Least-square mean percent error was significantly different from 0.0 for Atlantic sturgeon ( x̄ = −8.34, SE = 2.39) and white perch ( x̄ = 14.48, SE = 3.99) but not striped bass ( x̄ = 3.71, SE = 2.58) or channel catfish ( x̄ = 3.97, SE = 5.16). Underestimating lengths of Atlantic sturgeon may be due to difficulty in detecting the snout or the longer dorsal lobe of the heterocercal tail. White perch was the smallest species tested, and it had the largest percent measurement errors (both positive and negative) and the lowest percentage of images classified as good or acceptable. Automated length estimates for the four species using Echoview software varied with position in the view-field. Estimates tended to be low at more extreme azimuthal angles (fish's angle off-axis within the view-field), but mean and maximum estimates were highly correlated with total length. Software estimates also were biased by fish images partially outside the view-field and when acoustic crosstalk occurred (when a fish perpendicular to the sonar and at relatively close range is detected in the side lobes of adjacent beams). These sources of bias are apparent when files are processed manually and can be filtered out when producing automated software estimates. Multibeam sonar estimates of fish size should be useful for research and management if these potential sources of bias and imprecision are addressed.

Journal of Fish and Wildlife Management↗

USGS2020

Carbon dioxide-induced mortality of four species of North American fishes

Fisheries managers have a growing interest in the use of carbon dioxide (CO 2 ) as a tool for controlling invasive fishes. However, limited published data exist on susceptibility of many commonly encountered species to elevated CO 2 concentrations. Our objective was to estimate the 24-h 50% lethal concentration (LC 50 ) and 95% lethal concentration (LC 95 ) of CO 2 for four fishes (Rainbow Trout Oncorhynchus mykiss , Common Carp Cyprinus carpio , Channel Catfish Ictalurus punctatus , and Westslope Cutthroat Trout Oncorhynchus clarkii lewisi ). In the laboratory, we exposed juvenile fish to a range of CO 2 concentrations for 24 h in unpressurized, flow-through tanks. We developed a Bayesian hierarchical model to estimate the dose-response relationship for each fish species with associated uncertainty, and estimated 24-h LC 50 and LC 95 values based on laboratory trials for each species. The minimum concentration inducing mortality differed among cold water–adapted species and warm water–adapted species groups: 150 mg CO 2 /L for Westslope Cutthroat Trout and Rainbow Trout and 225 mg CO 2 /L for Common Carp and Channel Catfish. We observed complete mortality at 275 mg CO 2 /L (38,672 microatmospheres [μatm]), 225 mg CO 2 /L (30,711 μatm), and 495 mg CO 2 /L (65,708 μatm [Common Carp]; 77,213 μatm [Channel Catfish]) for Westslope Cutthroat Trout, Rainbow Trout, and both Common Carp and Channel Catfish, respectively. There was evidence of a statistical difference between the 24-h LC 95 values of Westslope Cutthroat Trout and Rainbow Trout (245.0 [222.2–272.2] and 190.6 [177.2–207.8] mg CO 2 /L, respectively). Additionally, these values were almost half the estimated 24-h LC 95 values for Common Carp and Channel Catfish (422.5 [374.7–474.5] and 434.2 [377.2–492.2] mg CO 2 /L, respectively). Although the experimental findings show strong relationships between increased CO 2 concentration and higher mortality, additional work is required to assess the efficacy and feasibility of a CO 2 application in a field setting.

Journal of Fish and Wildlife Management↗