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At least 955 records · Page 53Linked to original sources

USGS2011

Low-flow characteristics of Virginia streams

Low-flow annual non-exceedance probabilities (ANEP), called probability-percent chance (P-percent chance) flow estimates, regional regression equations, and transfer methods are provided describing the low-flow characteristics of Virginia streams. Statistical methods are used to evaluate streamflow data. Analysis of Virginia streamflow data collected from 1895 through 2007 is summarized. Methods are provided for estimating low-flow characteristics of gaged and ungaged streams. The 1-, 4-, 7-, and 30-day average streamgaging station low-flow characteristics for 290 long-term, continuous-record, streamgaging stations are determined, adjusted for instances of zero flow using a conditional probability adjustment method, and presented for non-exceedance probabilities of 0.9, 0.8, 0.7, 0.6, 0.5, 0.4, 0.3, 0.2, 0.1, 0.05, 0.02, 0.01, and 0.005. Stream basin characteristics computed using spatial data and a geographic information system are used as explanatory variables in regional regression equations to estimate annual non-exceedance probabilities at gaged and ungaged sites and are summarized for 290 long-term, continuous-record streamgaging stations, 136 short-term, continuous-record streamgaging stations, and 613 partial-record streamgaging stations. Regional regression equations for six physiographic regions use basin characteristics to estimate 1-, 4-, 7-, and 30-day average low-flow annual non-exceedance probabilities at gaged and ungaged sites. Weighted low-flow values that combine computed streamgaging station low-flow characteristics and annual non-exceedance probabilities from regional regression equations provide improved low-flow estimates. Regression equations developed using the Maintenance of Variance with Extension (MOVE.1) method describe the line of organic correlation (LOC) with an appropriate index site for low-flow characteristics at 136 short-term, continuous-record streamgaging stations and 613 partial-record streamgaging stations. Monthly streamflow statistics computed on the individual daily mean streamflows of selected continuous-record streamgaging stations and curves describing flow-duration are presented. Text, figures, and lists are provided summarizing low-flow estimates, selected low-flow sites, delineated physiographic regions, basin characteristics, regression equations, error estimates, definitions, and data sources. This study supersedes previous studies of low flows in Virginia.

Virginia↗

USGS2005

Influence of water temperature on acetylcholinesterase activity in the pacific tree frog ( Hyla regilla )

This investigation evaluated whether acetylcholinesterase (AChE) in Pacific tree frogs ( Hyla regilla ) from different geographical locations was influenced by different temperatures during early aquatic life stages, independent of pesticide exposure. Tadpoles were collected from both a California coastal pond and a Sierra Nevada mountain range pond, USA. Groups of frogs from each location were raised in temperatures representative of either the Sierra Nevada (8°C) or the coastal (19°C) location. Metamorphs from both locations raised as tadpoles at 19°C had AChE activities of 42.3 and 38.7 nm/min/mg protein, while those raised as tadpoles at 8°C had activities of 26.9 and 28.2 nm/min/mg protein. A two-way analysis of variance revealed temperature to be the significant factor in determining AChE activity ( F = 22.3, p < 0.001), although origin was not important ( F = 0.09, p = 0.75). Interpretations regarding the influence of pesticides upon AChE activity in Pacific tree frogs must consider the influence of environmental temperature to enable cross-population comparisons.

Environmental Toxicology and Chemistry↗

USGS1999

Areal-reduction factors for the precipitation of the 1-day design storm in Texas

The reduction of the precipitation depth from a design storm for a point to an effective (mean) depth over a watershed often is important for cost-effective design of hydraulic structures by reducing the volume of precipitation. A design storm for a point is the depth of precipitation that has a specified duration and frequency (recurrence interval). The effective depth can be calculated by multiplying the design-storm depth by an areal-reduction factor ( ARF ). ARF ranges from 0 to 1, varies with the recurrence interval of the design storm, and is a function of watershed characteristics such as watershed size and shape, geographic location, and time of year that the design storm occurs. This report documents an investigation of ARF by the U.S. Geological Survey, in cooperation with the Texas Department of Transportation, for the 1-day design storm for Austin, Dallas, and Houston, Texas. The "annual maxima-centered" approach used in this report specifically considers the distribution of concurrent precipitation surrounding an annual precipitation maxima. Unlike previously established approaches, the annual maxima-centered approach does not require the spatial averaging of precipitation nor explicit definition of a representative area of a particular storm in the analysis. Graphs of the relation between ARF and circular watershed area (to about 7,000 square miles) are provided, and a technique to calculate ARF for noncircular watersheds is discussed.

Texas↗

USGS1991

Mitochondrial DNA in wildlife forensic science: Species identification of tissues

A common problem in wildlife law enforcement is identifying the species of origin of carcasses, meat, or blood when morphological characters such as hair or bones are not available. Immunological and protein electrophoretic (allozyme or general protein) procedures have been used in species identification with considerable success (Bunch et al. 1976, McClymont et al. 1982, Wolfe 1983, Mardini 1984, Pex and Wolfe 1985, Dratch 1986), However, immunological tests often are not sensitive enough to distinguish closely related species. Furthermore, electrophoretically detectable protein polymorphisms may be lacking in certain populations or species and may not be species-specific. Analysis of DNA in human and wildlife forensics has been shown to be a potentially powerful tool for identification of individuals (Jeffreys et al. 1985, Vassartet al. 1987, Thommasen et al. 1989). Differences in copy number and nucleotide sequence of repetitive sequences in the nuclear (chromosomal) DNA result in hypervariability and individual-specific patterns which have been termed DNA "fingerprints." However, these patterns may be too variable for species identification necessitating analyses of more conservative parts of the genome. Mitochondrial DNA (mtDNA) is haploid, maternally inherited, similar in nucleotide sequence among conspecifics from the same geographic region, and more suitable for species identification, in contrast to hypervariable DNA fingerprints. MtDNA has several characteristics which make it useful as a species-specific marker. In mammals, individuals have a single mtDNA genotype shared by all tissues. Because mtDNA is haploid and reflects only maternal ancestry, the mtDNA gene number in a population is 4 times less than the nuclear gene number (Birky et al. 1983). This can result in relatively rapid loss or fixation of mtDNA genotypes so that all individuals in a population may be descended from a single ancestral female in as few as 4N ( N = population size) generations (Avise et al., 1984). This suggests there is great potential for identification of species-specific or population-specific mtDNA genotypes, Within species, mtDNA genotypes are thought to be selectively neutral, i.e., there is little evidence that genotypes differ in fitness (Nigro and Prout 1990).

Wildlife Society Bulletin↗

USGS2015

Predicting invasiveness of species in trade: Climate match, trophic guild and fecundity influence establishment and impact of non-native freshwater fishes

Aim Impacts of non-native species have motivated development of risk assessment tools for identifying introduced species likely to become invasive. Here, we develop trait-based models for the establishment and impact stages of freshwater fish invasion, and use them to screen non-native species common in international trade. We also determine which species in the aquarium, biological supply, live bait, live food and water garden trades are likely to become invasive. Results are compared to historical patterns of non-native fish establishment to assess the relative importance over time of pathways in causing invasions. Location Laurentian Great Lakes region. Methods Trait-based classification trees for the establishment and impact stages of invasion were developed from data on freshwater fish species that established or failed to establish in the Great Lakes. Fishes in trade were determined from import data from Canadian and United States regulatory agencies, assigned to specific trades and screened through the developed models. Results Climate match between a species’ native range and the Great Lakes region predicted establishment success with 75–81% accuracy. Trophic guild and fecundity predicted potential harmful impacts of established non-native fishes with 75–83% accuracy. Screening outcomes suggest the water garden trade poses the greatest risk of introducing new invasive species, followed by the live food and aquarium trades. Analysis of historical patterns of introduction pathways demonstrates the increasing importance of these trades relative to other pathways. Comparisons among trades reveal that model predictions parallel historical patterns; all fishes previously introduced from the water garden trade have established. The live bait, biological supply, aquarium and live food trades have also contributed established non-native fishes. Main conclusions Our models predict invasion risk of potential fish invaders to the Great Lakes region and could help managers prioritize efforts among species and pathways to minimize such risk. Similar approaches could be applied to other taxonomic groups and geographic regions.

Diversity and Distributions↗

USGS2021

Genome-wide SNP analysis of three moose subspecies at the southern range limit in the contiguous United States

Genome-wide evaluations of genetic diversity and population structure are important for informing management and conservation of trailing-edge populations. North American moose ( Alces alces ) are declining along portions of the southern edge of their range due to disease, species interactions, and marginal habitat, all of which may be exacerbated by climate change. We employed a genotyping by sequencing (GBS) approach in an effort to collect baseline information on the genetic variation of moose inhabiting the species’ southern range periphery in the contiguous United States. We identified 1920 single nucleotide polymorphisms (SNPs) from 155 moose representing three subspecies from five states: A. a. americana (New Hampshire), A. a. andersoni (Minnesota), and A. a. shirasi (Idaho, Montana, and Wyoming). Molecular analyses supported three geographically isolated clusters, congruent with currently recognized subspecies. Additionally, while moderately low genetic diversity was observed, there was little evidence of inbreeding. Results also indicated > 20% shared ancestry proportions between A. a. shirasi samples from northern Montana and A. a. andersoni samples from Minnesota, indicating a putative hybrid zone warranting further investigation. GBS has proven to be a simple and effective method for genome-wide SNP discovery in moose and provides robust data for informing herd management and conservation priorities. With increasing disease, predation, and climate related pressure on range edge moose populations in the United States, the use of SNP data to identify gene flow between subspecies may prove a powerful tool for moose management and recovery, particularly if hybrid moose are more able to adapt.

Conservation Genetics↗

USGS2019

Empirical estimation of natural geoelectric hazards

Geoelectric field time series can be estimated by convolving estimates of Earth‐surface impedance, such as those obtained from magnetotelluric survey measurements, with historical records of geomagnetic variation obtained at magnetic observatories. This straightforward procedure permits the mapping of geoelectric field variation during magnetic storms. Statistical analysis of the time series allows extrapolation to extreme‐value amplitudes, such as might be realized during an intense magnetic storm in the future. The development of these products is illustrated for the Mid‐Atlantic United States, using impedances obtained from EarthScope survey data and geomagnetic variation records obtained at the Fredericksburg observatory operated by the U.S. Geological Survey. For this region, 100‐year geoelectric exceedance amplitudes have a range of almost three orders of magnitude (from 0.04 V/km at a site in southern Pennsylvania to 24.29 V/km at a site in central Virginia), and they have significant geographic granularity, which is due to site‐to‐site differences in surface impedance (and subsurface electrical conductivity structure). Maps of 100‐year exceedance amplitudes resemble those of geoelectric amplitudes for the March 1989 magnetic storm, and, in that sense, the March 1989 storm resembles what might be loosely called a “100‐year” event.

Book chapter↗

USGS2009

Early warning of rainfall-induced shallow landslides and debris flows in the USA

The state of knowledge and resources available to issue alerts of precipitation-induced landslides vary across the USA. Federal and state agencies currently issue warnings of the potential for shallow, rapidly moving landslides and debris flows in a few areas along the Pacific coast and for areas affected by Atlantic hurricanes. However, these agencies generally lack resources needed to provide continuous support or to expand services to other areas. Precipitation thresholds that form the basis of landslide warning systems now exist for a few areas of the USA, but the threshold rainfall amounts and durations vary over three orders of magnitude nationwide and over an order of magnitude across small geographic areas such as a county. Antecedent moisture conditions also have a significant effect, particularly in areas that have distinct wet and dry seasons. Early warnings of shallow landslides that include specific information about affected areas, probability of landslide occurrence, and expected timing are technically feasible as illustrated by a case study from the Seattle, WA area. The four-level warning scheme (Null, Outlook, Watch, Warning) defined for Seattle is based on observed or predicted exceedance of a cumulative precipitation threshold and a rainfall intensity–duration threshold combined with real-time monitoring of soil moisture. Based on analysis of historical data, threshold performance varies according to precipitation characteristics, and threshold exceedance corresponds to a given probability of landslide occurrence. Experience in Seattle during December 2004 and January 2005 illustrates some of the challenges of providing landslide early warning on the USA West Coast.

Landslides↗

USGS1994

Identification of potential public water-supply areas of the Cape Cod aquifer, Massachusetts, using a geographic information system

Potential public water-supply areas of the Cape Cod aquifer, Massachusetts, were identified using a geographic information system (GIS) to aid regional and local ground-water resource management efforts. Criteria were selected to identify potential areas on the basis of data restrictions in addition to State requirements for siting new public water- supply wells, Federal or local restrictions on land use, and general hydrogeologic or water-quality concerns. Data layers were created for each criterion and overliad to eliminate areas from consideration as potential public water supplies. Remaining areas, those not included within the applied criteria, are the primary areas to consider for potential public water supplies. The areas identified in this analysis as potential public water supplies range from 0.5 to 7.9 percent of the individual flow cells, or 5.6 percent of the total flow cell area. The criteria were ranked so that criteria more limiting to potential public water supplies were given a higher rank than other criteria. The ranking scheme allows for the inclusion of areas with lower ranked criteria as potential public water supplies. Results can be viewed on a plat in this report, or accessed using the map-based, menu-driven GIS application, which provides interactive display and query of investigation results.

Water-Resources Investigations Report↗

USGS2023

Habitat utilization, demography, and behavioral observations of the squat lobster, Eumunida picta (Crustacea: Anomura: Eumunididae), on western North Atlantic deep-water coral habitats

Deep-sea coral habitats, comprising mostly Lophelia pertusa (Linnaeus 1758), are well developed on the upper and middle continental slope off the southeastern United States (SEUS). These habitats support a diverse and abundant invertebrate fauna, yet ecology and biology of most of these species are poorly known. Ten cruises conducted off the SEUS (Summer–Fall; Cape Lookout, NC–Cape Canaveral, FL) from 2000 to 2005, and in 2009 provided an opportunity to investigate abundance and distribution of Eumunida picta Smith1883, a large-sized species of squat lobster commonly associated with these deep-water coral habitats. Video analysis from 70 manned-submersible dives documented occurrence, density, location on the coral colony, and behavioral observations for 5774 individuals of E . picta . Individuals collected (n = 178) from coral and adjacent habitats (e.g., rubble, soft sediments) were measured and their sex determined. Males and females were comparable in size (to 53.5 mm carapace length) and exhibited a sex ratio of approximately 1:1. Eumunida picta were most frequently observed as solitary individuals on high-profile coral matrix and were noted only infrequently on coral rubble, or rarely on soft substratum. Presence of coral habitat (i.e., live/dead L. pertusa ), geographic region within the sampling area, and depth significantly influenced abundances of E. picta . Additionally, coral habitat (dead versus live coral), vertical position on the coral (upper, middle, or lower zone), as well as horizontal position in relation to the coral matrix (outer surface versus embedded in coral matrix) were significant factors influencing E. picta distributions within the coral habitat. More individuals were found on dead versus live coral, and most frequently occurred on the outer surfaces of coral branches located on the upper portion or near the tops of coral colonies. Eumunida picta were most often observed with claws extended into the water column. This unique hunting stance provides this squat lobster the opportunity to capture prey from the water column. An active predator, this species utilizes both pelagic (i.e., fishes, pyrosomes) and benthic (e.g., scavenging and grazing) food resources, and may function as an important trophic link between the water column and the benthos. Although considered a facultative reef associate in the strictest sense of the term, E. picta has a complex and intimate relationship with L. pertusa . Based on observations from dive videos, E. picta is a dominant and ecologically important member of the invertebrate assemblage associated with deep-sea coral habitats off the SEUS. As such, this species figures prominently in the structure and function of this ecosystem.

western North Atlantic↗

USGS2012

Ontogenetic and among-individual variation in foraging strategies of northeast Pacific white sharks based on stable isotope analysis

There is growing evidence for individuality in dietary preferences and foraging behaviors within populations of various species. This is especially important for apex predators, since they can potentially have wide dietary niches and a large impact on trophic dynamics within ecosystems. We evaluate the diet of an apex predator, the white shark ( Carcharodon carcharias ), by measuring the stable carbon and nitrogen isotope composition of vertebral growth bands to create lifetime records for 15 individuals from California. Isotopic variations in white shark diets can reflect within-region differences among prey (most importantly related to trophic level), as well as differences in baseline values among the regions in which sharks forage, and both prey and habitat preferences may shift with age. The magnitude of isotopic variation among sharks in our study (>5&permil; for both elements) is too great to be explained solely by geographic differences, and so must reflect differences in prey choice that may vary with sex, size, age and location. Ontogenetic patterns in δ 15 N values vary considerably among individuals, and one third of the population fit each of these descriptions: 1) δ 15 N values increased throughout life, 2) δ 15 N values increased to a plateau at ~5 years of age, and 3) δ 15 N values remained roughly constant values throughout life. Isotopic data for the population span more than one trophic level, and we offer a qualitative evaluation of diet using shark-specific collagen discrimination factors estimated from a 3+ year captive feeding experiment (Δ 13 C shark-diet and Δ 15 N shark-diet equal 4.2&permil; and 2.5&permil;, respectively). We assess the degree of individuality with a proportional similarity index that distinguishes specialists and generalists. The isotopic variance is partitioned among differences between-individual (48%), within-individuals (40%), and by calendar year of sub-adulthood (12%). Our data reveal substantial ontogenetic and individual dietary variation within a white shark population.

PLoS ONE↗

USGS2015

Mineral potential for sediment-hosted copper deposits in the Islamic Republic of Mauritania (phase V, deliverable 75)

The presence of Neoproterozoic through Cambrian, continental, siliciclastic sedimentary rocks interbedded with dolomitic carbonates, shales, and glacial tillites similar to the Katanga Supergroup host rocks of the Central African Copperbelt and other sediment-hosted copper-bearing Proterozoic sequences worldwide, is first order criteria for consideration of the Neoproterozoic units of the Taoudeni Basin in Mauritania as prospective for sediment-hosted copper deposits. Review of the National Mineral Occurrences Database (Marsh and Anderson, 2015) and previous literature suggest that only a handful of small sediment-hosted copper occurrences have been found to date in Mauritania and that the resource potential for this deposit type is low. In the northern Taoudeni Basin, the most important occurrence is at Taradent. This occurrence consists of three mineralized horizons in the lower Neoproterozoic Char Group in three outcrop areas separated by alluvium over a strike length of 12 kilometers (km). The most extensively mineralized horizon consists of malachite and disseminated copper sulfides, and is concentrated at the base of a dolomitic interval, consistent with a reduced faciestype sediment-hosted copper deposit model. Additional and poorly described copper occurrences in the Taoudeni Basin margin sedimentary rocks in northeastern Mauritania, such as Chegga Guettatira and Sidi Bara, may be sediment-hosted copper occurrences and extend the potential throughout this portion of the Basin. Additional potential for sediment-hosted copper deposits is indicated in reports by the British Geological Survey (BGS; Gunn and others, 2004) and BRGM (Salpeteur, 2005) in the Neoproterozoic-Cambrian sedimentary rocks (Teniagouri Group) of the central and southern Taoudeni Basin at a number of occurrences in the vicinity of Fouges, Weringuel, and Gig Zig. These occurrences exhibit characteristics consistent with a reduced-facies-type sediment-hosted copper deposit model and based on correlation of similar host rocks extend the potential throughout the entire Taoudeni Basin margin. Very poorly described copper occurrences in the northeastern and southeastern part of the Basin at Kreb en Naga, Kreb en Naga SW, Berbere, Dhar Nema, Dhar Nema 2, Saile, and Nejam-Medroume all are described as occurring in sedimentary rocks and are hosted by or are in close proximity to voluminous outcrops of Jurassic microgabbros (also referred to as dolerite or diabase). Uncertainty exists as to whether they are sediment-hosted copper occurrences. They are likely more closely analogous to copper occurrences associated with mafic igneous activity. The determination of whether reported copper occurrences and associated sedimentary rocks at Kreb en Naga and Kreb en Naga SW in the northeastern Taoudeni Basin and the Dhar Nema occurrences in the southeastern Taoudeni are permissive of sediment-hosted copper mineralization was inconclusive due to the absence of copper showings. While sedimentary host rocks at these locations must be broadly considered permissive, the absence of other favorable geologic features in these areas indicates that the potential for mineral deposits of this type is low. The widespread presence of mafic sills and dikes of Jurassic age throughout these areas and descriptions of associated minor copper mineralization suggests that many of the copper occurrences in these areas are not of the sediment-hosted copper type. Highly speculative potential exists in the Coastal Basin for Revett-type copper deposits in unexposed Jurassic-Cretaceous sandstones that may contain structural traps with gas accumulations. Eocene continental red bed sandstones of the Gorgol Formation, where overlain by the shallow marine sedimentary rocks of the Rinndiao Formation, represent an additional low potential rock sequence within the southeastern portion of the Coastal Basin that is permissive of sediment-hosted copper deposits. Field examinations of outcrop areas in the vicinity of many of the known occurrences were performed in late 2007 to provide additional criteria for evaluating the potential for this type of mineralization in Mauritania. In general, the geographic coordinates of occurrences are imprecise and many of the occurrences could not be located. Examination of outcrops of the Char Group in the Taradent area confirms the permissive nature of these rocks for reduced-facies-type sediment-hosted copper deposits. Inspection of weak copper mineralization hosted by black shales at several occurrences in the Gadel-Maylime area confirms that these occurrences are also of the reduced-faciestype and that the black and green shales of the Bouly and Ould Yenje Formations are permissive. Reported copper analyses up to 0.75 percent copper at Taradent and a single analysis of mineralized shale in the Gadel-Maylime area containing 0.55 percent copper indicate that low grade ore material exists at these locations. However indications that such copper grades are continuous over significant intervals and present in large tonnages are lacking. Although mineral occurrence data and descriptive geological information are adequate to delineate areas favorable for sediment-hosted copper deposits, this review indicates that potential for this type of deposit in Mauritania is low.

Open-File Report↗

USGS2021

Phylogeographic genetic diversity in the white sucker hepatitis B Virus across the Great Lakes Region and Alberta, Canada

Hepatitis B viruses belong to a family of circular, double-stranded DNA viruses that infect a range of organisms, with host responses that vary from mild infection to chronic infection and cancer. The white sucker hepatitis B virus (WSHBV) was first described in the white sucker (Catostomus commersonii), a freshwater teleost, and belongs to the genus Parahepadnavirus. At present, the host range of WSHBV and its impact on fish health are unknown, and neither genetic diversity nor association with fish health have been studied in any parahepadnavirus. Given the relevance of genomic diversity to disease outcome for the orthohepadnaviruses, we sought to characterize genomic variation in WSHBV and determine how it is structured among watersheds. We identified WSHBV-positive white sucker inhabiting tributaries of Lake Michigan, Lake Superior, Lake Erie (USA), and Lake Athabasca (Canada). Copy number in plasma and in liver tissue was estimated via qPCR. Templates from 27 virus-positive fish were amplified and sequenced using a primer-specific, circular long-range amplification method coupled with amplicon sequencing on the Illumina MiSeq. Phylogenetic analysis of the WSHBV genome identified phylogeographical clustering reminiscent of that observed with human hepatitis B virus genotypes. Notably, most non-synonymous substitutions were found to cluster in the pre-S/spacer overlap region, which is relevant for both viral entry and replication. The observed predominance of p1/s3 mutations in this region is indicative of adaptive change in the polymerase open reading frame (ORF), while, at the same time, the surface ORF is under purifying selection. Although the levels of variation we observed do not meet the criteria used to define sub/genotypes of human and avian hepadnaviruses, we identified geographically associated genome variation in the pre-S and spacer domain sufficient to define five WSHBV haplotypes. This study of WSHBV genetic diversity should facilitate the development of molecular markers for future identification of genotypes and provide evidence in future investigations of possible differential disease outcomes.

Alberta, Michigan, Minnesota, Ohio, Wisconsin↗

USGS1985

Interspecific competition among Hawaiian forest birds

The object of this study was to determine whether interspecific competition modified local geographic distribution, after taking into account the effect of habitat structure. The tendencies for 14 passerine birds to have positive or negative associations were examined, using 7861 sample points in seven native forests on the islands of Hawaii, Maui, and Kauai. All birds were at least partly insectivorous and were fairly common in forested areas, although some fed chiefly on nectar or fruit. Species—pairs were classified as primary or secondary potential competitors based on general dietary similarity. To evaluate the association between species and to account for the effect of individual species habitat preferences, partial correlations were computed for each species—pair in a study area from the simple correlations between the species and 26 habitat variables plus two quadratic terms to represent nonlinearity. The partial correlations represented a short—term ("instantaneous") assessment of the strength of competitive interactions, and did not reflect the accumulation of competitive displacement through time. Of 170 partial correlations in the analysis, only 10 indicated significant negative association. The general pattern was of positive association (76 significantly positive partials), which probably resulted from flocking and from attraction of birds to areas of resource superabundance. Two species showed consistent patterns of negative partial correlations over several adjacent study areas, the Japanese White—eye/Iiwi in montane Hawaii, and the Japanese White—eye/Elepaio in windward Hawaii; both patterns could be reasonably attributed to direct competition. Species—pairs were grouped by the native or exotic status of the component species. Native/exotic pairs had a significantly greater proportion of negative partial correlations (37%) than either native/native pairs (8%) or exotic/exotic pairs (0%). This pattern was consistent across the seven study areas and appeared to reflect the occurrence of interspecific competition along a broad and diffuse ecological "front" between a co—evolved native avifauna and recently introduced exotic species. The role of competition in the pattern was corroborated by the significantly higher proportion of negative partial correlations among species—pairs of primary potential competitors than among those of secondary potential competitors. Our results suggested that °47% of the primary potential competitors among native/exotic species—pairs may experience at least small depressions in local population density due to competition. Although the negative correlations were for the most part small (average negative r = 0.06), one species could eventually replace another as spatial displacement accumulated through time. The Japanese White—eye appeared to have a principal role in native/exotic interactions, with 62% of the partial correlations between it and native primary potential competitor species being negative. Noteworthy implications were that (1) it was important to account for the habitat responses of individual species when studying the role of interspecific competition in modifying small—scale geographic distribution; (2) competition was frequently sporadic in its geographic occurrence and in the species affected, thus supporting Wiens' (1977) theory of competition; and (3) as a consequence, the role of interspecific competition in modifying distribution may be difficult to detect statistically with small data sets.

Hawaii↗

USGS2016

Regional analysis of social characteristics for evacuation resource planning: ARkStorm scenario

Local planning is insufficient for regional catastrophes; regional exercises are needed to test emergency plans and decision-making structures. The ARkStorm scenario would trigger a mass evacuation that would be complicated by the social characteristics of populations [e.g., vehicle ownership, age, poverty, English language limitation (ELL), and shelter needs]. Land cover data and dasymetric mapping improves the allocation of residential populations and their social characteristics to the ARkStorm flood zone in 21 counties in California. Numbers and concentrations of county, urban, and rural residents exposed to flooding as well as populations in and out of the scenario flood zone are profiled. The results inform mass evacuation planning by providing a means to (1) examine the sufficiency of mutual aid agreements, (2) underscore planning for carless populations, and (3) tailor multilingual communication strategies. The various geographical distinctions emphasize different challenges throughout the region. It will be important to investigate behavioral responses to warnings, identify evacuation constraints (e.g., shelter capacity versus need), and obtain comparable data on transient populations.

Natural Hazards Review↗

USGS2014

Radar analysis of fall bird migration stopover sites in the northeastern U.S.

The national network of weather surveillance radars (WSR-88D) detects flying birds and is a useful remote-sensing tool for ornithological study. We used data collected during fall 2008 and 2009 by 16 WSR-88D radars in the northeastern U.S. to quantify the spatial distribution of landbirds during migratory stopover. We geo-referenced estimates based on radar reflectivity, of the density of migrants aloft at their abrupt evening exodus from daytime stopover sites, to the approximate locations from which they emerged. We classified bird stopover use by the magnitude and variation of radar reflectivity across nights; areas were considered “important” stopover sites for conservation if bird density was consistently high. We developed statistical models that predict potentially important stopover sites across the region, based on land cover, ground elevation, and geographic location. Large areas of regionally important stopover sites were located along the coastlines of Long Island Sound, throughout the Delmarva Peninsula, in areas surrounding Baltimore and Washington, along the western edge of the Adirondack Mountains, and within the Appalachian Mountains of southwestern Virginia and West Virginia. Locally important stopover sites generally were associated with deciduous forests embedded within landscapes dominated by developed or agricultural lands, or near the shores of major water bodies. Preserving or enhancing patches of natural habitat, particularly deciduous forests, in developed or agricultural landscapes and along major coastlines could be a priority for conservation plans addressing the stopover requirements of migratory landbirds in the northeastern U.S. Our maps of important stopover sites can be used to focus conservation efforts and can serve as a sampling frame for fieldwork to validate radar observations or for ecological studies of landbirds on migratory stopover.

The Condor↗

USGS2020

Genomes reveal genetic diversity of Piscine orthoreovirus in farmed and free-ranging salmonids from Canada and USA

Piscine orthoreovirus (PRV-1) is a segmented RNA virus which is commonly found in salmonids in the Atlantic and Pacific Oceans. PRV-1 causes the Heart and Skeletal Muscle Inflammation (HSMI) disease in Atlantic salmon and is associated with several other disease conditions. Previous phylogenetic studies of genome segment 1 (S1) identified four main genogroups of PRV-1 (S1 genogroups I – IV). The goal of the present study was to use Bayesian phylogenetic inference to expand our understanding of the spatial, temporal and host patterns of PRV-1 from the waters of the northeast Pacific. To that end, we determined the coding genome sequences of 14 PRV-1 samples that were selected to improve our knowledge of genetic diversity across a broader temporal, geographic and host range, including the first reported genome sequences from the northwest Atlantic (Eastern Canada). Nucleotide and amino acid sequences of the concatenated genomes and their individual segments revealed that established sequences from the northeast Pacific were monophyletic in all analyses. Bayesian inference phylogenetic trees of S1 sequences using BEAST and MrBayes also found that sequences from the northeast Pacific grouped separately from sequences from other areas. One PRV-1 sample (WCAN_BC17_AS_2017) from an escaped Atlantic salmon, collected in British Columbia but derived from Icelandic broodstock, grouped with other S1 sequences from Iceland. Our concatenated genome and S1 analysis demonstrated that PRV-1 from the northeast Pacific is genetically distinct but descended from PRV-1 from the North Atlantic. However, the analyses were inconclusive as to the timing and exact source of introduction into the northeast Pacific, either from eastern North America or European waters of the North Atlantic. There was no evidence that PRV-1 was evolving differently between free-ranging Pacific Salmon and farmed Atlantic Salmon. The northeast Pacific PRV-1 sequences fall within genogroup II based on the classification of Garseth et al. (2013), which also includes North Atlantic sequences from Eastern Canada, Iceland and Norway. The additional full genome sequences herein strengthen our understanding of phylogeographical patterns related to the northeast Pacific, but a more balanced representation of full PRV-1 genomes from across its range, as well additional sequencing of archived samples, are still needed to better understand global relationships including potential transmission links among regions.

Faroe Islands↗

USGS2018

Flood-inundation maps for the Withlacoochee River From Skipper Bridge Road to St. Augustine Road, within the City of Valdosta, Georgia, and Lowndes County, Georgia

Digital flood-inundation maps for a 12.6-mile reach of the Withlacoochee River from Skipper Bridge Road to St. Augustine Road (Georgia State Route 133) were developed to depict estimates of the areal extent and depth of flooding corresponding to selected water levels (stages) at the U.S. Geological Survey (USGS) streamgage at Withlacoochee River at Skipper Bridge Road, near Bemiss, Ga. (023177483). Real-time stage information from this streamgage can be used with these maps to estimate near real-time areas of inundation. The forecasted peak-stage information for the USGS streamgage at Withlacoochee River at Skipper Bridge Road, near Bemiss, Ga. (023177483), can be used in conjunction with the maps developed for this study to show predicted areas of flood inundation. A one-dimensional step-backwater model was developed using the U.S. Army Corps of Engineers Hydrologic Engineer-ing Center’s River Analysis System (HEC–RAS) software for the Withlacoochee River and was used to compute flood profiles for a 12.6-mile reach of the Withlacoochee River. The hydraulic model was then used to simulate 23 water-surface profiles at 1.0-foot (ft) intervals at the Withlacoochee River near the Bemiss streamgage. The profiles ranged from the National Weather Service action stage of 10.7 ft, which is 131.0 ft above the North American Vertical Datum of 1988 (NAVD 88), to a stage of 32.7 ft, which is 153.0 ft above NAVD 88. The simulated water-surface profiles were then combined with a geographic information system digital elevation model—derived from light detection and ranging (lidar) data having a 4.0-ft horizontal resolution—to delineate the area flooded at each 1.0-ft interval of stream stage.

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