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Hydrostratigraphic Framework and Selection and Correlation of Geophysical Log Markers in the Surficial Aquifer System, Palm Beach County, Florida

The surficial aquifer system is the major source of freshwater for public water supply in Palm Beach County, Florida, yet many previous studies of the hydrogeology of this aquifer system have focused only on the eastern one-half to one-third of the county in the more densely populated coastal area (Land and others, 1973; Swayze and others, 1980; Swayze and Miller, 1984; Shine and others, 1989). Population growth in the county has resulted in the westward expansion of urbanized areas into agricultural areas and has created new demands on the water resources of the county. Additionally, interest in surface-water resources of central and western areas of the county has increased. In these areas, plans for additional surface-water storage reservoirs are being made under the Comprehensive Everglades Restoration Plan originally proposed by the U.S. Army Corps of Engineers and the South Florida Water Management District (1999), and stormwater treatment areas have been constructed by the South Florida Water Management District. Surface-water and ground-water interactions in the Everglades are thought to be important to water budgets, water quality, and ecology (Harvey and others, 2002). Most of the previous hydrogeologic and ground-water flow simulation studies of the surficial aquifer system have not utilized a hydrostratigraphic framework, in which stratigraphic or sequence stratigraphic units, such as those proposed in Cunningham and others (2001), are delineated in this stratigraphically complex aquifer system. A thick zone of secondary permeability mapped by Swayze and Miller (1984) was not subdivided and was identified as only being within the Anastasia Formation of Pleistocene age. Miller (1987) published 11 geologic sections of the surficial aquifer system, but did not delineate any named stratigraphic units in these sections. This limited interpretation has resulted, in part, from the complex facies changes within rocks and sediments of the surficial aquifer system and the seemingly indistinct and repetitious nature of the most common lithologies, which include sand, shell, sandstone, and limestone. Model construction and layer definition in a simulation of ground-water flow within the surficial aquifer system of Palm Beach County utilized only the boundaries of one or two major hydrogeologic zones, such as the Biscayne aquifer and surficial aquifer system; otherwise layers were defined by average elevations rather than geologic structure or stratigraphy (Shine and others, 1989). Additionally, each major permeable zone layer in the model was assumed to have constant hydraulic conductivity with no allowance for the possibility of discrete (thin) flow zones within the zone. The key to understanding the spatial distribution and hydraulic connectivity of permeable zones in the surficial aquifer system beneath Palm Beach County is the development of a stratigraphic framework based on a consistent method of county-wide correlation. Variability in hydraulic properties in the system needs to be linked to the stratigraphic units delineated in this framework, and proper delineation of the hydrostratigraphic framework should provide a better understanding and simulation of the ground-water flow system. In 2004, the U.S. Geological Survey, in cooperation with the South Florida Water Management District, initiated an investigation to develop a hydrostratigraphic framework for the surficial aquifer system in Palm Beach County.

Scientific Investigations Map↗

Using structured decision making to incorporate ecological and social values into harvest decisions: Case studies of white-tailed deer and walleye

Harvest decisions for fish and wildlife populations often include conflicting ecological, economic, and social values. Using decision analysis, such as structured decision making and adaptive management, as a framework to aid decision makers in multi-objective decision making for setting harvest regulations can lead to a more transparent and resilient decision. The process includes opportunities for inclusion of stakeholders’ concerns, either through multi-party workshops or the use of social science techniques to elicit objectives (i.e., values) and predict consequences of management actions. The authors present two case studies of using decision analysis to determine stakeholders’ objectives, identify alternative harvest strategies, predict the consequences of these alternatives on all objectives, and analyze tradeoffs among objectives. A case study of white-tailed deer ( Odocoileus virginianus ) in New York State provides an example of combining predictive population modeling and implementation of survey instruments statewide to determine optimal region-specific harvest regulations. Harvest management of walleye ( Sander vitreus ) provides an example of the inclusion of commercial and recreational angler groups in a series of workshops to make decisions about harvest quotas for one of the world’s largest freshwater fisheries.

Book chapter↗

Avian influenza virus prevalence in marine birds is dependent on ocean temperatures

Waterfowl and shorebirds are the primary hosts of influenza A virus (IAV), however, in most surveillance efforts, large populations of birds are not routinely examined; specifically marine ducks and other birds that reside predominately on or near the ocean. We conducted a long-term study sampling sea ducks and gulls in coastal Maine for IAV and found a virus prevalence (1.7%) much lower than is typically found in freshwater duck populations. We found wide year-to-year variation in virus detection in sea ducks and that the ocean water temperature was an important factor affecting IAV prevalence. In particular, the ocean temperature that occurred 11 d prior to collecting virus positive samples was important while water temperature measured concurrently with host sampling had no explanatory power for viral detection. We also experimentally showed that IAV is relatively unstable in sea water at temperatures typically found during our sampling. This represents the first report of virus prevalence and actual environmental data that help explain the variation in marine IAV transmission dynamics.

Maine↗

Differing modes of biotic connectivity within freshwater ecosystem mosaics

We describe a collection of aquatic and wetland habitats in an inland landscape, and their occurrence within a terrestrial matrix, as a “freshwater ecosystem mosaic” (FEM). Aquatic and wetland habitats in any FEM can vary widely, from permanently ponded lakes, to ephemerally ponded wetlands, to groundwater‐fed springs, to flowing rivers and streams. The terrestrial matrix can also vary, including in its influence on flows of energy, materials, and organisms among ecosystems. Biota occurring in a specific region are adapted to the unique opportunities and challenges presented by spatial and temporal patterns of habitat types inherent to each FEM. To persist in any given landscape, most species move to recolonize habitats and maintain mixtures of genetic materials. Species also connect habitats through time if they possess needed morphological, physiological, or behavioral traits to persist in a habitat through periods of unfavorable environmental conditions. By examining key spatial and temporal patterns underlying FEMs, and species‐specific adaptations to these patterns, a better understanding of the structural and functional connectivity of a landscape can be obtained. Fully including aquatic, wetland, and terrestrial habitats in FEMs facilitates adoption of the next generation of individual‐based models that integrate the principles of population, community, and ecosystem ecology.

Journal of the American Water Resources Associatio↗

Using Gambusia affinis growth and condition to assess estuarine habitat quality: A comparison of indices

Numerous indices have been used to estimate fish growth and condition however, differences in sensitivity and reliability of the methods have hampered efforts to identify appropriate indicators for routine evaluation of habitat quality in the field. We compared common morphometric (length, weight, somatic growth, length-weight condition) and biochemical (RNA:DNA ratio, relative DNA content, energy density) growth indices on the same wild-caught mosquitofish Gambusia affinis to examine their usefulness as indicators of habitat quality. A laboratory experiment was used to quantify growth rates of wild-caught G. affinis under different feeding treatments. Field studies consisted of both a short-term enclosure experiment (10 d) and weekly (7 wk) fish collections to compare growth indices in managed inflow and reference marshes during a winter/spring freshwater pulse event in upper Breton Sound, Louisiana, USA. Marshes flooded by restored freshwater pulses were capable of producing optimum growth (0.001 g DW d-1 DW = dry weight) and energetically valuable habitat (>6000 cal g-1 DW) for trophic transport. Because of differences in timing of response, morphometric and biochemical indices were generally not directly correlated, but there was clear agreement in direction and magnitude of response. The most striking difference in timing was that biochemical indices (RNA:DNA) responded more slowly to treatments than did morphometric growth indices. While gross patterns are comparable between indicators, differences in sensitivity and response time between indicators suggest that choice of indicator needs to be accounted for in interpretation and analysis of effects. ?? Inter-Research 2010, www.int-res.com.

Marine Ecology Progress Series↗

The Pleurobemini (Bivalvia: Unionida) revisited: Molecular species delineation using a mitochondrial DNA gene reveals multiple conspecifics and undescribed species

The Pleurobemini (Bivalvia: Unionida) represent approximately one-third of freshwater mussel diversity in North America. Species identification within this group is challenging due to morphological convergence and phenotypic plasticity. Accurate species identification, including characterisation of currently unrecognised taxa, is required to develop effective conservation strategies because many species in the group are imperiled. We examined 575 cox1 sequences from 110 currently recognised species (including 13 Fusconaia and 21 Pleurobema species) to understand phylogenetic relationships among pleurobemine species (mainly Fusconaia and Pleurobema ) and to delineate species boundaries. The results of phylogenetic analyses showed no geographic structure within widespread species and illustrated a close relationship between Elliptio lanceolata and Parvaspina collina . Constraint tests supported monophyly of the genera Fusconaia and Pleurobema , including the subgenus P . ( Sintoxia ). Furthermore, results revealed multiple conspecifics, including P. hanleyianum and P. troschelianum , P. chattanoogaense and P. decisum , P. clava and P. oviforme , P. rubrum and P. sintoxia , F. askewi and F. lananensis , and F. cerina and F. flava . Species delimitation analyses identified three currently unrecognised taxa (two in Fusconaia and one in Pleurobema ). Further investigation using additional genetic markers and other lines of evidence (e.g. morphology, life history, ecology) are necessary before any taxonomic changes are formalised.

Invertebrate Systematics↗

Food‐web structure and ecosystem function in the Laurentian Great Lakes—Toward a conceptual model

The relationship between food‐web structure (i.e., trophic connections, including diet, trophic position, and habitat use, and the strength of these connections) and ecosystem functions (i.e., biological, geochemical, and physical processes in an ecosystem, including decomposition, production, nutrient cycling, and nutrient and energy flows among community members) determines how an ecosystem responds to perturbations, and thus is key to understanding the adaptive capacity of a system (i.e., ability to respond to perturbation without loss of essential functions). Given nearly ubiquitous changing environmental conditions and anthropogenic impacts on global lake ecosystems, understanding the adaptive capacity of food webs supporting important resources, such as commercial, recreational, and subsistence fisheries, is vital to ecological and economic stability. Herein, we describe a conceptual framework that can be used to explore food‐web structure and associated ecosystem functions in large lakes. We define three previously recognised broad habitat compartments that constitute large lake food webs (nearshore, pelagic, and profundal). We then consider, at three levels, how energy and nutrients flow: (a) into each basal resource compartment; (b) within each compartment; and (c) among multiple compartments (coupling). Flexible shifts in food‐web structures (e.g., via consumers altering their diet or habitat) that sustain these flows in the face of perturbations provide evidence for adaptive capacity. We demonstrate the conceptual framework through a synthesis of food‐web structure and ecosystem function in the Laurentian Great Lakes, with emphasis on the upper trophic levels (i.e., fishes). Our synthesis showed evidence of notable adaptive capacity. For example, fishes increased benthic coupling in response to invasion by mussels and round gobies. However, we also found evidence of loss of adaptive capacity through species extirpations (e.g., widespread collapse in the abundance and diversity of ciscoes, Coregonus spp., except in Lake Superior). In large freshwater lakes, fishery managers have traditionally taken a top‐down approach, focusing on stocking and harvest policy. By contrast, water quality managers have focused on nutrient effects on chemical composition and lower trophic levels of the ecosystem. The synthesised conceptual model provides resource managers a tool to more systematically interpret how lower food‐web dynamics influence harvestable fish populations, and vice versa, and to act accordingly such that sustainable resource practices can be achieved. We identify key gaps in knowledge that impede a fuller understanding of the adaptive capacities of large lakes. In general, we found a greater uncertainty in our understanding of processes influencing energy and nutrient flow within and among habitats than flows into the system.

Great Lakes↗

Cape Romain partnership for coastal protection

This final report summarizes activities, outcomes, and lessons learned from a 3-year project titled “Climate Change Adaptation for Coastal National Wildlife Refuges” with the Cape Romain National Wildlife Refuge (NWR) and local partners in the surrounding South Carolina Lowcountry. The Lowcountry is classified as the 10-county area encompassing the coastal plain of South Carolina (this report specifically focuses on Berkeley, Charleston, and Georgetown Counties). The goals of this work, sponsored by the U.S. Geological Survey’s Southeast Climate Adaptation Science Center (SECASC), were to foster active engagement with stakeholders; to develop a comprehensive definition of adaptation problems faced by agencies, organizations, and individuals near the Cape Romain NWR that accounts for global change, local values, knowledge and perceptions; and to encourage social learning and building of effective networks and trust across South Carolina Lowcountry organizations and individuals. Although project scoping began at the scale of the Atlantic seaboard, by engaging with NWRs from Massachusetts to Florida, participating refuge personnel eventually selected the Cape Romain NWR to serve as a case study for testing our goals. The Cape Romain Partnership for Coastal Conservation was established to address global change impacts at a regional level and includes representation from Federal and State resource agencies, local conservation nongovernmental organizations, and organizations representing underserved community interests. Research topics, originating from discussions with Cape Romain Partnership for Coastal Conservation members, focused on quantifying key drivers of change including localized sea-level rise (SLR) predictions, estimates of coastal hurricane inundation as amplified by SLR, and urban growth trends and forecasts. These key drivers provided a foundation to engage stakeholders in planning exercises to begin a process of collective understanding and collaborative decision making. The goal of this process was to develop collective strategies of adaptation to enhance community and ecosystem resilience in the South Carolina Lowcountry. South Carolina’s Lowcountry is experiencing rapid environmental and social transformation because of SLR rates approaching twice the global average, chronic tidal flooding and catastrophic storm surges, erosion and loss of habitats that provide essential services to wildlife and humans, and increasing social polarization fueled by aggressive low-density urban growth and other forms of land conversion. To support characterizations of plausible future scenarios, we used available or, in some cases, developed new models to project future conditions of key environmental and social-economic drivers. Because of the imprecision of mean global SLR projections, the SECASC commissioned a climatological study to account for local conditions and multiple representative concentration pathways to project a tailored distribution of future sea levels. These projections were matched to SLR scenarios provided by existing models to anticipate the range of future coastal habitat changes in the South Carolina Lowcountry. SLR scenarios were also incorporated into existing storm-surge models, which do not account for alternate baseline sea levels, to project the local effects of future hurricanes. To evaluate the extent and effects of population growth and urban expansion, we relied on an existing urban-growth model to map the spatial distribution of land-conversion probabilities, the total area of which is predicted to increase twofold to threefold over the next 60 years. In addition to this simplified model, an econometric model is in development to account for nonlinear feedback dynamics in land value, land use, and ecosystem service production. Although not yet completed, the goals of this model are to produce more-detailed projections of growth dynamics and to allow predictions of development patterns resulting from alternate land-use planning policies and incentives. Collaborative planning for an uncertain future requires more than providing decision makers with information on future physical and ecological conditions; developing effective and consensual strategies must also integrate sociological values, multiple cultural perspectives, and an understanding of human behavior. To support broad stakeholder engagement in integrative approaches to adaptation planning, emphasis was placed on the importance of considering differences in how individuals perceive their environment and create meaning. Because cultural frameworks form the basis for perceptions and, ultimately, the behaviors of individuals and institutions, we describe a model of human behavior and how it can be used to understand the effect of cultural complexity and variation in perception on choices, behavioral change, and long-term maintenance of behaviors. We consider a model commonly used in the field of behavioral health that accommodates variation in human perception when describing stages of behavior and the dynamics of behavioral change. Tailoring communication and engagement activities to targeted stakeholders is likely to benefit from increased understanding of behavioral change processes. The complex nature of this problem limited the usefulness of a traditional decision-analytic approach, we explored alternative methods for engagement, collaborative learning and decision making. Recognizing that project partners and Lowcountry stakeholders may be at different stages of preparedness and interest level for modifying behavior as a function of global change, we facilitated a scenario-planning exercise to familiarize partners with this well-established approach for communicating the opportunities and threats arising under alternative, plausible futures. We developed narratives for four alternative South Carolina Lowcountry scenarios to be used in later strategic planning that focus on quantitative trends for three primary drivers with high impact and high uncertainty: manifestations of climate change, social-political shifts at a global level, and forces of local value and power structures. This scenario-planning exercise underscored the complex relation between the temporospatial scale of the production of ecological goods and services and the institutional scale at which they are managed. We then guided the partners through an assessment of the relevant strengths and weaknesses of the Cape Romain Partnership for Coastal Protection, using the threats and opportunities characterized by each scenario to understand how the partnership might respond when attempting to meet conservation and societal objectives. The partnership identified key strengths including partnership experience, outreach and technical capacities, a substantial conservation land base, and high social cohesion in the South Carolina Lowcountry. Limited communication expertise, institutional inertia, and insufficient staffing and funding were recognized as important weaknesses across the partnership. By examining and scoring combinations of internal strengths and weaknesses and external threats and opportunities, the partnership developed sets of prioritized strategies to consider in the context of a given scenario. Although we had insufficient time to examine all scenarios in detail, the intent was to identify a portfolio of strategic actions to address threats and opportunities represented in multiple plausible futures. Top-ranking strategies encompassed a range of actions that focused on strengthening the conservation community and communicating the benefits of nature (that is, ecosystem services) to leveraging partnerships to expand land protection. This report also details the methods and preliminary results of several models developed or applied in support of this project. Two parcel-selection algorithms were used to evaluate anticipated habitat changes and patterns of urban growth to guide decisions on optimal conservation reserve design to protect habitat communities. One approach used a widely available planning software (MARXAN) to maximize conservation benefits near the Cape Romain NWR, whereas the other approach was a novel application of economic theory to account for uncertainty in future conditions and for the risks of unanticipated habitat loss. This latter model applies modern portfolio theory to estimate the risk of investing in any portfolio of land parcels (that is, candidate “reserves”) under climate-change uncertainty by quantifying the variation and spatial correlation of conservation benefits derived from each portfolio. We expanded the range of actions beyond simply whether or not to invest in a set of land parcels, an approach commonly used in spatial conservation planning, to also include consideration of divestment from currently protected lands. Such refinements allow for better accounting of system dynamics and can evaluate the benefits of flexible conservation tools such as rolling easements. Model results were conditional on a decision maker’s risk tolerance but highlighted general strategies of land conservation to increase future habitat representation beyond what is expected under the current protected land base. We built models that may help inform coastal planning by estimating salinity dynamics and the performance of oyster reef restoration efforts to predict the combined effects of global change and management of freshwater flows on coastal habitats and the processes that contribute to their resilience. These models can support restoration decisions by evaluating the expected benefits of site locations for shoreline protection and fisheries production. Lastly, we developed a spatially explicit economic model that predicts feedback dynamics among land value, land-use change, and effects on ecosystem service provision to explore zoning policies and incentives on urban growth and ecosystem services. We summarize these efforts with insights and considerations for the Cape Romain Partnership for Coastal Protection to continue to engage stakeholders in effective adaptation planning. First, notions of place attachment (referred to as sense of place), and the role of culture in social discourse are increasingly being used to understand the complex interactions between society and the environment and how societies respond and adapt to climate change. Sense of place was a unifying theme whenever the future of the South Carolina Lowcountry was discussed. The contribution of the South Carolina Lowcountry’s environmental wealth, rich cultural heritage, and quality of life to sense of place has important implications for how adaptation planning might best be pursued. More community-based governance of the commons (in other words, natural and cultural resources held in common), in which broad stakeholder participation and power sharing are key elements, is considered important. This devolution of governance is characterized by polycentric institutions and self-organizing social networks that promote a local culture of knowledge sharing, problem solving, and learning. These so-called bridging organizations (or individuals) often provide the leadership necessary to bring together potentially disparate Government agencies and institutions, private organizations, and individuals in a collective process of problem solving. Our observations also suggest that the conservation community in the South Carolina Lowcountry views its activities as integral to the broader governance of social-ecological systems, in which responses to the forces of global change are mediated through culture, economics, and politics. Rather than directly competing with other interests, the South Carolina Lowcountry conservation community seems to embrace an interpretation of conservation in which the fundamental objective is the quality of human life rather than environmental protection. Fundamental to the types of governance reforms described above is the notion of coproduction, in which experts and users collaborate to develop a shared body of knowledge. In this approach, scientists work with stakeholders to help frame questions, design research, and collect and analyze data. Such sustained collaborations are increasingly believed to be an effective way to produce useable (or actionable) science. The emphasis on social learning, leveraging strong social networks, coordinating and deliberating among diverse stakeholders, and applying principles of adaptive management is an essential contribution to adaptive capacity. The diverse and robust set of scientific approaches, methods to help stakeholders collaborate in effective and goal-driven planning processes, and decision tools resulting from this project hopefully will assist Cape Romain NWR and its partners prepare for climatic, ecological, and social changes over the coming decades.

South Carolina↗

Causal mechanisms of soil organic matter decomposition: Deconstructing salinity and flooding impacts in coastal wetlands

Coastal wetlands significantly contribute to global carbon storage potential. Sea-level rise and other climate change-induced disturbances threaten coastal wetland sustainability and carbon storage capacity. It is critical that we understand the mechanisms controlling wetland carbon loss so that we can predict and manage these resources in anticipation of climate change. However, our current understanding of the mechanisms that control soil organic matter decomposition, in particular the impacts of elevated salinity, are limited, and literature reports are contradictory. In an attempt to improve our understanding of these complex processes, we measured root and rhizome decomposition and developed a causal model to identify and quantify the mechanisms that influence soil organic matter decomposition in coastal wetlands that are impacted by sea-level rise. We identified three causal pathways: 1) a direct pathway representing the effects of flooding on soil moisture, 2) a direct pathway representing the effects of salinity on decomposer microbial communities and soil biogeochemistry, and 3) an indirect pathway representing the effects of salinity on litter quality through changes in plant community composition over time. We used this model to test the effects of alternate scenarios on the response of tidal freshwater forested wetlands and oligohaline marshes to short- and long-term climate-induced disturbances of flooding and salinity. In tidal freshwater forested wetlands, the model predicted less decomposition in response to drought, hurricane salinity pulsing, and long-term sea-level rise. In contrast, in the oligohaline marsh, the model predicted no change in response to sea-level rise, and increased decomposition following a drought or a hurricane salinity pulse. Our results show that it is critical to consider the temporal scale of disturbance and the magnitude of exposure when assessing the effects of salinity intrusion on carbon mineralization in coastal wetlands. Here we identify three causal mechanisms that can reconcile disparities between long-term and short-term salinity impacts on organic matter decomposition.

Ecology↗

Influence of increased freshwater inflow on nitrogen and phosphorus budgets in a dynamic subtropical estuary, Barataria Basin, Louisiana

Coastal Louisiana is currently experiencing high rates of wetland loss and large-scale ecosystem restoration is being implemented. One of the largest and most novel restoration projects is a controlled sediment diversion, proposed to rebuild and sustain wetlands by diverting sediment- and nutrient-rich water from the Mississippi River. However, the impact of this proposed sediment diversion on the nutrient budget of the receiving basin is largely unknown. A water quality model was developed to investigate the impact of the planned Mid-Barataria Sediment Diversion on the nutrient budget of the Barataria Basin (herein referred to as ‘the Basin’). The model results indicate that the planned diversion will increase TN and TP pools by about 38% and 17%, respectively, even with TN and TP loadings that increase by >300%. Water quality model results suggest that the increase of nutrients in the basin will be mitigated by increased advection transport (i.e., decreased residence time from ~170 days to ~40 days, leading to greater flushing) and increased removal via assimilation, denitrification, and settling within the Basin. Advection transport resulted in higher TN removal in the Basin than other processes, such as uptake or denitrification. Approximately 25% of the additional TN loading and 30% of the additional TP loading were processed within the Basin through the assimilation of phytoplankton and wetland vegetation, denitrification, and burial in the sediment/soils. These nutrient budgets help to better understand how the planned large-scale sediment diversion project may change the future ecological conditions within the estuaries of coastal Louisiana and near-shore northern Gulf of Mexico.

Louisiana↗

Estimating the aboveground biomass and carbon stocks of tall shrubs in a prerestoration degraded salt marsh

Wetlands play a vital role in Earth's carbon cycle and provide important ecosystem services. Their ability to perform their roles can be compromised by human activities that destroy or impair their functioning. The restoration of degraded wetlands may allow carbon cycle functioning, as well as other services, to be recovered. Predicting the potential outcomes from any restoration project requires upfront consideration, including via modeling possible changes in carbon stocks. In this study, we quantified the carbon stocks in tall shrub vegetation proliferating in a degraded salt marsh that is currently the subject of an extensive restoration project. We produced allometric models to estimate biomass and carbon stocks for three tall shrub species, which, along with other freshwater and upland species in the area, will die with continued restoration. Therefore, estimating the potential for carbon losses in biomass is important. We also developed a means of estimating carbon stocks in other nontree plants in the estuary area. Useful equations for estimating the biomass of tall shrubs are limited in general and lacking for degraded systems. Our study adds to the literature on carbon stocks in shrub species and fills a data gap for degraded ecosystems. It also contributes to the broader carbon feasibility study of the aforementioned restoration project that was designed to predict the overall net impact of the project on greenhouse gas emissions in the ecosystem.

Restoration Ecology↗

Landscape unit based digital elevation model development for the freshwater wetlands within the Arthur C. Marshall Loxahatchee National Wildlife Refuge, Southeastern Florida

The hydrologic regime is a critical limiting factor in the delicate ecosystem of the greater Everglades freshwater wetlands in south Florida that has been severely altered by management activities in the past several decades. "Getting the water right" is regarded as the key to successful restoration of this unique wetland ecosystem. An essential component to represent and model its hydrologic regime, specifically water depth, is an accurate ground Digital Elevation Model (DEM). The Everglades Depth Estimation Network (EDEN) supplies important hydrologic data, and its products (including a ground DEM) have been well received by scientists and resource managers involved in Everglades restoration. This study improves the EDEN DEMs of the Loxahatchee National Wildlife Refuge, also known as Water Conservation Area 1 (WCA1), by adopting a landscape unit (LU) based interpolation approach. The study first filtered the input elevation data based on newly available vegetation data, and then created a separate geostatistical model (universal kriging) for each LU. The resultant DEMs have encouraging cross-validation and validation results, especially since the validation is based on an independent elevation dataset (derived by subtracting water depth measurements from EDEN water surface elevations). The DEM product of this study will directly benefit hydrologic and ecological studies as well as restoration efforts. The study will also be valuable for a broad range of wetland studies.

Florida↗

Spatial and temporal variation in dissolved organic matter in urban streams in metropolitan Boston, Massachusetts (USA)

Urban riverine systems are heterogeneous, and the substantial variability in impervious cover, riparian cover, wetlands, and wastewater and stormwater infrastructure affect sources and transport of dissolved organic matter (DOM), of which dissolved organic C (DOC) is a substantial component. An understanding of the quantity, bioavailability, and timing of DOM inputs (a key energy source for food webs and a component of nutrient cycling) to streams within cities can help to better evaluate drivers of DOM variability. We sampled 100 stream sites in the greater Boston (Massachusetts, USA) area spanning a range of land cover, riparian vegetation, stream size, housing and infrastructure age, and sociodemographic characteristics. Water samples collected during 4 seasonal synoptic events in 2021 and 2022 were analyzed for DOC concentration and DOM characteristics (using fluorescence excitation–emission matrices and absorbance spectra). Temporally, we observed more-autochthonous DOM and lower DOC concentrations in the summer, possibly due to low precipitation and streamflow disconnecting streams from humic wetland and soil C sources. Consistent with other studies, we observed that more-urbanized streams had DOM that was less humic and more autotrophic. Higher wetland cover was associated with more-humic, higher-molecular-weight DOM and was the strongest predictor of DOM characteristics, suggesting that managers should consider the impacts of development on DOM, stream ecological functions, and CO 2 emissions. Interestingly, except during the very dry summer, sites downstream of combined sewer outfalls showed distinctly higher concentrations of protein-like DOM, suggesting the influence of sewage overflows and highlighting the potential for monitoring wastewater contamination using protein-like DOM. Although sociodemographic variables were not strong predictors of DOM composition, we observed a possible association between lower-income areas with less canopy cover and more-autochthonous DOM and between areas with older housing, more canopy cover, and more-humic DOM. These patterns suggest that equitable repair of wastewater infrastructure and restoration of riparian vegetation is needed.

Massachusetts↗

Mass mortality in freshwater mussels (Actinonaias pectorosa) in the Clinch River, USA, linked to a novel densovirus

Freshwater mussels (order Unionida) are among the world’s most biodiverse but imperiled taxa. Recent unionid mass mortality events around the world threaten ecosystem services such as water filtration, nutrient cycling, habitat stabilization, and food web enhancement, but causes have remained elusive. To examine potential infectious causes of these declines, we studied mussels in Clinch River, Virginia and Tennessee, USA, where the endemic and once-predominant pheasantshell ( Actinonaias pectorosa ) has suffered precipitous declines since approximately 2016. Using metagenomics, we identified 17 novel viruses in Clinch River pheasantshells. However, only one virus, a novel densovirus ( Parvoviridae ; Densovirinae ), was epidemiologically linked to morbidity. Clinch densovirus 1 was 11.2 times more likely to be found in cases (moribund mussels) than controls (apparently healthy mussels from the same or matched sites), and cases had 2.7 (log 10 ) times higher viral loads than controls. Densoviruses cause lethal epidemic disease in invertebrates, including shrimp, cockroaches, crickets, moths, crayfish, and sea stars. Viral infection warrants consideration as a factor in unionid mass mortality events either as a direct cause, an indirect consequence of physiological compromise, or a factor interacting with other biological and ecological stressors to precipitate mortality.

Virginia, Tennessee↗

Analysis of seafloor change around Dauphin Island, Alabama, 1987–2015

Dauphin Island is a 26-km-long barrier island located southwest of Mobile Bay, Alabama, in the north-central Gulf of Mexico. The island contains sandy beaches, dunes, maritime forests, freshwater ponds and intertidal wetlands, providing habitat for many endangered and threatened species. Dauphin Island also provides protection for and maintains estuarine conditions within Mississippi Sound, supporting oyster habitat and seagrasses. Wetland marshes along the Alabama mainland are protected by the island from wave-induced erosion during storms approaching from the Gulf of Mexico. Over the years, the island has been eroded by storms, most recently by Hurricane Ivan (2004) and Hurricane Katrina (2005) (Ivan/Katrina), which breached the island along its narrowest extent and caused damage to infrastructure. Along with storms producing significant episodic change, long-term beach erosion has exposed numerous pine tree stumps in the shoreface. The stumps are remnants of past maritime forests and reflect the consistent landward retreat of the island. Island change has prompted the State of Alabama to evaluate restoration alternatives to increase island resilience and sustainability by protecting and preserving the natural habitat, and by understanding the processes that influence shoreline change. Under a grant from the National Fish and Wildlife Foundation, restoration alternatives are being developed that will allow the State to make decisions on engineering and ecological restoration designs based on scientific analysis of likely outcomes and tradeoffs between impacts to stakeholder interests. Science-based assessment of the coastal zone requires accurate and up-to-date baseline data to provide a valid image of present conditions and to support modeling of coastal processes. Bathymetric elevation measurements are essential to this requirement. In August 2015, the U.S. Army Corps of Engineers and the U.S. Geological Survey conducted single beam and multibeam bathymetric surveys around Dauphin Island using a variety of shallow draft vessels and equipment. More than 95 square kilometers of seafloor was imaged. The data were integrated into a seamless digital elevation model to provide a high-resolution bathymetric map of the seafloor extending 9.5 kilometers seaward from the island’s eastern end and approximately 2 km along the rest of the island on the gulf and sound sides. Water depths range from 0.3 to 15.0 meters (m), with depths greater than 10.0 m constrained to the Mobile ship channel on the extreme eastern flank of the coverage. To measure seafloor change, two periods of historic hydrographic survey data were acquired from the National Oceanic and Atmospheric Administration National Centers for Environmental Information data archive. The two timeframes (1987–1988 and 2005–2007) were selected for their completeness of spatial coverage and because they encompass a period of significant storm impacts to the island. These timeframes were compared to each other and with the 2015 dataset to monitor elevation gain (sediment accretion) and elevation loss (sediment erosion) over time. Sediment dynamics is by far the most significant driver of nearshore elevation change in this area. The Mississippi-Alabama inner shelf is a passive margin, and other influences on elevation change (for example, tectonic adjustment, Holocene subsidence, and eustatic sea-level rise) are neither significant nor variable enough over this time period to have an imprint.

Alabama↗

Continuous Turbidity Monitoring in the Indian Creek Watershed, Tazewell County, Virginia, 2006-08

Thousands of miles of natural gas pipelines are installed annually in the United States. These pipelines commonly cross streams, rivers, and other water bodies during pipeline construction. A major concern associated with pipelines crossing water bodies is increased sediment loading and the subsequent impact to the ecology of the aquatic system. Several studies have investigated the techniques used to install pipelines across surface-water bodies and their effect on downstream suspended-sediment concentrations. These studies frequently employ the evaluation of suspended-sediment or turbidity data that were collected using discrete sample-collection methods. No studies, however, have evaluated the utility of continuous turbidity monitoring for identifying real-time sediment input and providing a robust dataset for the evaluation of long-term changes in suspended-sediment concentration as it relates to a pipeline crossing. In 2006, the U.S. Geological Survey, in cooperation with East Tennessee Natural Gas and the U.S. Fish and Wildlife Service, began a study to monitor the effects of construction of the Jewell Ridge Lateral natural gas pipeline on turbidity conditions below pipeline crossings of Indian Creek and an unnamed tributary to Indian Creek, in Tazewell County, Virginia. The potential for increased sediment loading to Indian Creek is of major concern for watershed managers because Indian Creek is listed as one of Virginia's Threatened and Endangered Species Waters and contains critical habitat for two freshwater mussel species, purple bean (Villosa perpurpurea) and rough rabbitsfoot (Quadrula cylindrical strigillata). Additionally, Indian Creek contains the last known reproducing population of the tan riffleshell (Epioblasma florentina walkeri). Therefore, the objectives of the U.S. Geological Survey monitoring effort were to (1) develop a continuous turbidity monitoring network that attempted to measure real-time changes in suspended sediment (using turbidity as a surrogate) downstream from the pipeline crossings, and (2) provide continuous turbidity data that enable the development of a real-time turbidity-input warning system and assessment of long-term changes in turbidity conditions. Water-quality conditions were assessed using continuous water-quality monitors deployed upstream and downstream from the pipeline crossings in Indian Creek and the unnamed tributary. These paired upstream and downstream monitors were outfitted with turbidity, pH (for Indian Creek only), specific-conductance, and water-temperature sensors. Water-quality data were collected continuously (every 15 minutes) during three phases of the pipeline construction: pre-construction, during construction, and post-construction. Continuous turbidity data were evaluated at various time steps to determine whether the construction of the pipeline crossings had an effect on downstream suspended-sediment conditions in Indian Creek and the unnamed tributary. These continuous turbidity data were analyzed in real time with the aid of a turbidity-input warning system. A warning occurred when turbidity values downstream from the pipeline were 6 Formazin Nephelometric Units or 15 percent (depending on the observed range) greater than turbidity upstream from the pipeline crossing. Statistical analyses also were performed on monthly and phase-of-construction turbidity data to determine if the pipeline crossing served as a long-term source of sediment. Results of this intensive water-quality monitoring effort indicate that values of turbidity in Indian Creek increased significantly between the upstream and downstream water-quality monitors during the construction of the Jewell Ridge pipeline. The magnitude of the significant turbidity increase, however, was small (less than 2 Formazin Nephelometric Units). Patterns in the continuous turbidity data indicate that the actual pipeline crossing of Indian Creek had little influence of downstream water quality; co

Scientific Investigations Report↗

Global assessment of aquatic Isoëtes species ecology

Isoëtes are iconic but understudied wetland plants, despite having suffered severe losses globally mainly because of alterations in their habitats. We therefore provide the first global ecological assessment of aquatic Isoëtes to identify their environmental requirements and to evaluate if taxonomically related species differ in their ecology. The assessment resulted in an extensive new database on aquatic Isoëtes , ecological niche analyses, and descriptive species accounts. We compiled a global database that includes all known environmental data collected from 1935 to 2023 regarding aquatic Isoëtes. We then evaluated the environmental drivers of 16 species using 2,179 global records. Additionally, we used hypervolume analysis to quantify the ecological niches of the two species with the greatest number of records, finding significant differences and evidence that Isoëtes echinospora occupies a wider ecological niche than Isoëtes lacustris . Fifty-nine species (30% of the c. 200 Isoëtes species known today) were categorised as aquatic and were mainly reported in the Americas and northern Europe. About 38% of the aquatic species are threatened with extinction or are endemic to a small region, according to the International Union for Conservation of Nature's Red List in 2023. Many species were determined to be sensitive to certain water physical and chemical factors, generally preferring oligotrophic conditions such as low total phosphorus, moderate total nitrogen, moderate to low pH, and low conductivity. This analysis includes ecological data in the assessment of rare/threatened aquatic plants globally. This new database and the ecological analyses completed defined the ecological requirements of several species and identified knowledge gaps, which can aid management actions and future research. This paper highlights ecological significance and environmental sensitivities of aquatic Isoëtes . The current level of knowledge is inadequate for a large proportion of known taxa. We affirm the extreme need to support global, collaborative initiatives on which to build future conservation strategies.

Freshwater Biology↗

Chemical Composition of Ectoprocta (Bryozoa)

Published data on the elemental composition of the Ectoprocta (Bryozoa) are supplemented by new chemical analyses of 28 ectoproct samples, distributed among 13 species, for organic matter, CO 2 calcium, magnesium, strontium, barium, phosphorus and iron. The new data, in addition to the 25 fairly complete analyses previously published (distributed among 19 other species) suggest the existence of 3 species groupings that are based on composition and are related to habitat. Group I consists of genera that have more than 50 percent organic matter (dry weight). It includes all species of the entirely freshwater Phylactolaemata and the commonly brackish-water and freshwater Ctenostomata. Group II includes Cheilostomata having from 25 to 50 percent organic matter (dry weight). These genera are bush-like in growth habit and may be anchored to fine-grained sediment bottoms. Genera in Group II contain appreciable amounts of P 2 O 5 (1.0-2.0 percent) and Fe 2 O 3 (0.4-1.0 percent) in the ash. Only calcite has been observed in the mineralized portion of the skeleton of Group II species. Group III includes Cheilostomata and Cyclostomata that have less than 25 percent organic matter. These forms require stable surfaces for colonization. They contain a lesser amount of P 2 O 5 (0.1-0.6 percent) and of Fe 2 O 3 (less than 0.4 percent) than Group II genera. About 15 percent of Group III species have aragonitic skeletons. "Pure" aragonitic hard parts contain about 1.0 percent SrO (1.4 wt. percent SrCO 3 and 0.3 percent MgO (0.6 wt. percent MgCO 3 ) whereas "pure" calcitic skeletons contain less than 0.4 percent SrO (0.6 wt. percent SrCO 3 ) and more than 3.5 percent MgO (7.4 wt. percent MgCO 3 ). Based on the few species analyzed, some additional taxonomic and ecologic generalizations are suggested. Calcitic cheilostomes contain more magnesium than do calcitic cyclostomes. Warm water calcitic species have higher magnesium concentrations than do cold water calcitic species. Specimens from an estuary contain more P 2 O 5 and less strontium than do specimens from areas of normal marine salinity, and specimens from nearshore areas have more iron than do specimens from deeper offshore areas. The order of concentration of elements in ectoprocts relative to the composition of sea water is 10 5 for phosphorus and iron, 10 3 for barium, 10 2 for calcium and strontium, and 10 1 for magnesium. However, the elements that are highly enriched in ectoprocts, especially iron and phosphorus, may be supplied to a considerable extent by sources other than normal sea water, such as food (diatoms in particular), and occluded matter of terrigenous origin. Twenty-eight protein and chitin amino acids were studied in three representative marine ectoproct species: Bugula simplex, a calcitic cheilostome, Parasmittina nitida, an aragonitic cheilostome, and Tubulipora liliacea, a calcitic cyclostome. Similar proportions but widely different amounts (from 0.6 to 11 percent organism dry weight) of amino acids occur in these species. Obvious variations in amino acid proportions relate more directly to degree of calcification and to mineralogy than to species classification. Chitin amino acids recoverable in residues after leaching with acid form less than 2 percent of the total organic content of the organism.

Journal of Paleontology↗