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At least 955 records · Page 53Linked to original sources
USGS2003

A rehabilitation plan for walleye populations and habitats in Lake Superior

The walleye ( Stizostedion vitreum vitreum ) has been historically important in regional fisheries and fish communities in large bays, estuaries, and rivers of Lake Superior. Significant negative impacts on the species caused by overharvesting, habitat degradation, and pollution during the late 1800s and early 1900s have led to the preparation of a strategic rehabilitation plan. The lakewide goal is to maintain, enhance, and rehabilitate habitat for walleye and to establish self-sustaining populations in areas where walleyes historically lived. Population objectives that support the goal are to increase the abundance of juvenile and adult walleyes in selected areas. Habitat objectives that support the goal include increasing spawning and nursery habitat in four areas: enhancing fish passage, reducing sedimentation, increasing water quality, and reducing contaminants in walleyes. Progress toward achieving the habitat objectives should be measured by documenting increases in spawning and nursery habitats, resolving fish-passage issues, reducing sediments in rivers, and reducing contaminant levels in walleyes. Stocking various life stages of walleye should be considered to rehabilitate certain degraded populations. Total annual mortality of walleye populations should be less than 45% to allow populations to either increase or be maintained at target levels of abundance. Routine assessments should focus on gathering the data necessary to evaluate abundance and mortality and on taking inventories of spawning and nursery habitats. Research should be conducted to understand the specific habitat requirements for Lake Superior walleye populations and the habitat-abundance relationships for populations and for the lake as a whole.

Miscellaneous Publication↗
USGS2026

Agency approach to allocation of human capital and program composition for human-marine mammal interaction management in the United States

Introduction: Marine mammals have served important and diverse roles throughout human history. Once exploited to near extinction, many species in the United States (U.S.) have recovered dramatically under the Marine Mammal Protection Act (MMPA). The U.S. National Marine Fisheries Service (NMFS) has jurisdiction to administer the MMPA for cetaceans and most pinnipeds. While most take is now prohibited, NMFS still dedicates significant time and resources to protecting and conserving marine mammals. As human populations continue to grow and exploit marine environments, opportunities for human-marine mammal interactions (HMMI) have increased. Resources may fail to keep up with growing needs for conservation investments, so that many agencies struggle to adequately meet social and legal requirements. Methods: This study evaluated NMFS’ approach to addressing HMMI through a mixed-methods (semi-structured interviews, quantitative questionnaire, and facilitated workshops) expert elicitation analysis of resource allocation (i.e., staff time) and priorities of NMFS Science Center (SC) and Regional Office (RO) staff across five geographic regions to understand how employee time is allocated, the degree to which employee time allocation is aligned with self-reported job descriptions, and employee perceptions of actions or investments which would improve their ability to mitigate HMMI. Results and Discussion: SC staff reported spending more time on Biological and Administrative tasks , while RO staff allocated more time to Policy, Social science , and Outreach tasks . SC employees spent less time on Biological tasks than specified by their perceived job descriptions, suggesting resource constraints. Participants identified Biological research and monitoring as top priorities, followed by Policy tasks . Identified actions included increasing research capacity, enhancing enforcement, expanding social science expertise, and improving outreach programs. The study reveals mismatches between mandated activities and available resources, suggesting strategic reallocation or increased funding may benefit the agency in effectively addressing growing HMMI challenges.

Frontiers in Marine Science↗
USGS2014

A scientific basis for restoring fish spawning habitat in the St. Clair and Detroit Rivers of the Laurentian Great Lakes

Loss of functional habitat in riverine systems is a global fisheries issue. Few studies, however, describe the decision-making approach taken to abate loss of fish spawning habitat. Numerous habitat restoration efforts are underway and documentation of successful restoration techniques for spawning habitat of desirable fish species in large rivers connecting the Laurentian Great Lakes are reported here. In 2003, to compensate for the loss of fish spawning habitat in the St. Clair and Detroit Rivers that connect the Great Lakes Huron and Erie, an international partnership of state, federal, and academic scientists began restoring fish spawning habitat in both of these rivers. Using an adaptive management approach, we created 1,100 m 2 of productive fish spawning habitat near Belle Isle in the Detroit River in 2004; 3,300 m 2 of fish spawning habitat near Fighting Island in the Detroit River in 2008; and 4,000 m 2 of fish spawning habitat in the Middle Channel of the St. Clair River in 2012. Here, we describe the adaptive-feedback management approach that we used to guide our decision making during all phases of spawning habitat restoration, including problem identification, team building, hypothesis development, strategy development, prioritization of physical and biological imperatives, project implementation, habitat construction, monitoring of fish use of the constructed spawning habitats, and communication of research results. Numerous scientific and economic lessons learned from 10 years of planning, building, and assessing fish use of these three fish spawning habitat restoration projects are summarized in this article.

Detroit River, St. Clair River↗
USGS2008

Davis Pond freshwater prediversion biomonitoring study: freshwater fisheries and eagles

In January 2001, the construction of the Davis Pond freshwater diversion structure was completed by the U.S. Army Corps of Engineers. The diversion of freshwater from the Mississippi River is intended to mitigate saltwater intrusion from the Gulf of Mexico and to lessen the concomitant loss of wetland areas. In addition to the freshwater inflow, Barataria Bay basin would receive nutrients, increased flows of sediments, and water-borne and sediment-bound compounds. The purpose of this biomonitoring study was, therefore, to serve as a baseline for prediversion concentrations of selected contaminants in bald eagle ( Haliaeetus leucocephalus ) nestlings (hereafter referred to as eaglets), representative freshwater fish, and bivalves. Samples were collected from January through June 2001. Two similarly designed postdiversion studies, as described in the biological monitoring program, are planned. Active bald eagle nests targeted for sampling eaglet blood (n = 6) were generally located southwest and south of the diversion structure. The designated sites for aquatic animal sampling were at Lake Salvador, at Lake Cataouatche, at Bayou Couba, and along the Mississippi River. Aquatic animals representative of eagle prey were collected. Fish were from three different trophic levels and have varying feeding strategies and life histories. These included herbivorous striped mullet ( Mugil cephalus ), omnivorous blue catfish ( Ictalurus furcatus ), and carnivorous largemouth bass ( Micropterus salmoides ). Three individuals per species were collected at each of the four sampling sites. Freshwater Atlantic rangia clams ( Rangia cuneata ) were collected at the downstream marsh sites, and zebra mussels ( Dreissena spp.) were collected on the Mississippi River. The U.S. Geological Survey (USGS) Biomonitoring of Environmental Status and Trends (BEST) protocols served as guides for fish sampling and health assessments. Fish are useful for monitoring aquatic ecosystems because they accumulate pesticides and other contaminants. Biomarker data on individual fish, generated at the USGS National Wetlands Research Center (Lafayette, La.), included percent white blood cells in whole blood, spleen weight to body weight ratio, liver weight to body weight ratio, condition factor, splenic macrophage aggregates, and liver microsomal 7-ethoxyresorufin-o-deethylase (EROD) activity. Fish age was estimated by comparing total lengths with values from the same species in the Southeast United States as determined from the literature. Contaminant analyses were coordinated by the U.S. Fish and Wildlife Service (USFWS) Analytical Control Facility (Laurel, Md.), where residues of organochlorine (OC) pesticides, total polychlorinated biphenyls (PCBs), polycyclic aromatic hydrocarbons (PAHs), aliphatic hydrocarbons (AHs), and trace elements were determined. The organic contaminant data were generated at the Mississippi State University Chemical Lab (Mississippi State, Miss.), and the inorganic contaminant data were generated by the Texas A&M University Geochemical and Environmental Research Group (College Station, Tex.). Statistical tests were performed to assess relationships among contaminants, fish age, fish species, and collection sites. Trends in interspecific differences among fish in concentrations of contaminants were noted. Striped mullet (hereafter mullet) frequently displayed the highest chemical concentrations. Levels of contaminants were generally higher in samples obtained from the Mississippi River than in those collected from the diversion area and were higher in mussels and clams (hereafter bivalves) than in fish. Because the Mississippi River sampling site for mullet and largemouth bass was downriver of the structure and south of New Orleans and the catfish site was upriver, the downriver data may not be directly reflective of the results from the receiving waters at the Davis Pond structure. Compared to the Caernarvon freshwater prediversion study in 1990 that assessed possible influx of contaminants with the freshwater diversion, contaminant levels in fishes and bivalves in this study were generally lower, yet three nontoxic inorganic elements in Davis Pond fish samples exhibited ranges of concentrations that were more than two times higher than did those from Caernarvon. Levels in bivalves were different between diversions but about equal in the numbers of trace elements showing high levels per location. Contaminant values were compared to those listed in various literature and agency sources, both regional and national, including the National Contaminant Biomonitoring Program (NCBP), in which the 85th percentile and above represents what is considered to be an elevated contaminant concentration and cause for concern. Generally, bivalves were at the high end of their ranges for both organic and inorganic contaminants. In this study, OCs were detectable in 67 percent of fish from the Mississippi River site, ranging from 0.15 to 1.09 μg/g wet weight (ww) or fresh weight (fw), and in 11 percent of the fish from the marsh sites, ranging from 0.06 to 0.612 μg/g ww. Bivalves from the Mississippi River had OC levels of 0.096 μg/g ww, whereas none were detectable in bivalves at the marsh sites. In this study, p,p ’-dichlorodiphenyldichloroethylene ( p,p’ -DDE) (a biodegradation product of DDT [dichlorodiphenyl trichloroethane]) and total PCBs were the most frequently detected OCs and were primarily from the Mississippi River. For total OC content, using adjusted least squares means, some significant interactions were noted between fish species and sites. PAHs were detected in aquatic animals at all sites (range of 0.017–17.534 μg/g ww), as were AHs (range of 0.423–4.549 μg/g ww); the highest levels of PAHs and AHs were found in bivalves from the Mississippi River. When analysis of variance (α = 0.05) was performed with data from aquatic animals, there were only two significant relationships between PAHs, AHs, and OCs between species, site, and age or the interaction among these variables. There was an interaction between fish species and n-decane (an AH) in that mullet and largemouth bass had significantly higher levels than did catfish ( P = 0.0175). When general linear means were used to investigate associations of inorganic contaminants among fish species, site, and age or any interactions among these variables, no significant results were noted for arsenic, cadmium, lead, beryllium, boron, molybdenum, or nickel. The range of mercury in fish in this study was 0.04–0.14 μg/g ww (0.14– 0.48 μg/g dry weight [dw]), with the most elevated levels detected in predatory largemouth bass at the sampling point farthest downstream from the structure and within the marsh area. Mercury was positively correlated with fish age ( P = 0.0152), where levels were estimated to increase 0.0253 parts per million (ppm) dw per year. In the Mississippi River, catfish showed significantly higher levels of mercury than did mullet or largemouth bass ( P = 0.00167). Among fish species, mullet displayed the highest levels in fish of aluminum, barium, manganese, and iron, all considered to have low toxicity in hydrologic systems. An interaction between fish and site was seen with aluminum ( P = 0.0031), where concentrations in mullet were significantly higher in the Mississippi River than at the other sites, as was also seen with barium ( P = 0.0009), chromium ( P = <0.0001), manganese ( P = 0.0004), strontium ( P = 0.0074), vanadium ( P = 0.0156), and zinc ( P = 0.0059). For iron ( P = 0.0.0001), mullet and largemouth bass at both the Mississippi River and Lake Salvador showed higher levels than did catfish, and these two species showed higher levels at two of the four sites. An interaction between fish and site was also seen with chromium ( P = <0.0001) in that concentrations in mullet were significantly higher in the Mississippi River than at the other sites, as was also seen with strontium ( P = 0.0074), vanadium ( P = 0.0156), and zinc ( P = 0.0059), metals for which deleterious effects have been demonstrated in other ecosystems. The NCBP program lists the 85th percentile for zinc at 34.2 μg/g fw (117.9 μg/g dw). In the Davis Pond prediversion biomonitoring study (hereafter the current study), one fish (MUL31RIVER, fish ID 8) showed values higher than that (125.4 μg/g dw or 37.54 μg/g ww), and the Mississippi River bivalve sample (MUSSRIVER) had a value of 140 μg/g dw (41.2 μg/g ww). In the current study, approximately 86 percent of the fish had measurable selenium levels, yet none reached the 85th percentile. The 85th percentile for selenium from the NCBP was 0.73 μg/g ww. Significantly higher levels of selenium were seen in mullet than in largemouth bass and catfish ( P = 0.0023). The NCBP 85th percentile for lead is 0.22 μg/g ww (0.76 μg/g dw). In the current study, the range of concentrations of lead was as much as 18.3 ppm dw (MUL31RIVER, fish ID 8), with the three most elevated values (range of 3.46–5.31 μg/g ww) coming from mullet from the Mississippi River. Biomarker data are measurable and directly reflect the condition of the animal, and measuring more than one biomarker in an individual increases confidence in health assessments. In the current study, biomarkers included macrophage aggregates (MAs), liver (hepatosomatic index [HSI]) and spleen (splenosomatic index [SSI]) weight to body weight ratios, percent white blood cells (WBCs) in whole blood, and condition factor. Few significant differences were noted with any of the biomarkers between sites, and there were no relationships between species and sites. For improved use of biomarker assessments, an increase in fish sample size would be useful for postdiversion sampling, as would comparisons of fish of the same sex and reproductive condition. During the current study, success for eagle nests in the diversion area and reference sites was similar as determined by numbers of nestlings fledged. When temperatures were below average during winter 2000, nests in both regions similarly failed. At each nest, the primary evidence of food items was small mammals. Eaglets (n = 6) generally appeared healthy, and whole blood concentrations of organic contaminants exceeded detection limits with three incidences of p,p’ -DDE (0.002–0.006 μg/L ww) and one incidence of oxychlordane (0.002 μg/L ww). The levels of p,p’ -DDE were well below those that have been inversely correlated with productivity and success rates of nesting bald eagles on a regional scale. The low values found in the whole blood samples for OC pesticides and PCBs were even lower when corrected for plasma volume. Aluminum values were 3.66 and 5.75 μg/L in two samples, zinc ranged from 5.21 to 6.77 μg/L ww in six samples, and silicon ranged from 1.7 to 4.6 μg/L in four samples. Selenium was detectable in each bird with the range at 0.332–0.566 μg/L ww, and strontium ranged from 0.0581 to 0.0975 μg/L ww. Mercury was detectable in blood samples from each bird and ranged from 0.0254 to 0.0845 μg/L ww, whereas lead was detectable in four samples and ranged from 0.0042 to 0.0136 μg/L ww. Although no detectable levels of total PCBs were found (also correlated with decreased reproductive productivity), 70 percent of the aquatic animals from the Mississippi River contained total PCBs (range 0.13–0.79 μg/L), whereas only about 7 percent of the aquatic animals sampled from the marsh area contained PCBs. Suggestions for postdiversion sampling include lowering the analytical detection limit for some metals, sampling aquatic animals over the course of a single season, obtaining a higher sample number of mature fish of one species (for example, blue catfish) within a range of total lengths for biomarker analyses, obtaining otoliths for estimating fish ages, assessing dioxins in eaglet blood, examining triazines in water, and obtaining all Mississippi River fish samples as close to the Davis Pond structure intake as possible. Because contaminants found in blood of eaglets reflect their prey species and because of the contaminant levels found in fish in the current study, eaglets may not be consuming primarily these species; therefore, obtaining juvenile nutria ( Myocastor coypus ) or turtle species for contaminant analyses might be considered, as well as collecting greater blood volume and using plasma to measure OCs and PCBs. Data obtained postdiversion will be compared with prediversion data to monitor changes.

Louisiana↗
USGS2009

Hierarchical Bayesian analysis to incorporate age uncertainty in growth curve analysis and estimates of age from length: Florida manatee (Trichechus manatus) carcasses

Age estimation of individuals is often an integral part of species management research, and a number of ageestimation techniques are commonly employed. Often, the error in these techniques is not quantified or accounted for in other analyses, particularly in growth curve models used to describe physiological responses to environment and human impacts. Also, noninvasive, quick, and inexpensive methods to estimate age are needed. This research aims to provide two Bayesian methods to (i) incorporate age uncertainty into an age-length Schnute growth model and (ii) produce a method from the growth model to estimate age from length. The methods are then employed for Florida manatee (Trichechus manatus) carcasses. After quantifying the uncertainty in the aging technique (counts of ear bone growth layers), we fit age-length data to the Schnute growth model separately by sex and season. Independent prior information about population age structure and the results of the Schnute model are then combined to estimate age from length. Results describing the age-length relationship agree with our understanding of manatee biology. The new methods allow us to estimate age, with quantified uncertainty, for 98% of collected carcasses: 36% from ear bones, 62% from length.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2002

Cruise report RV Moana Wave Cruise M-1-02-GM bathymetry and acoustic backscatter of the mid and outer continental shelf, head of De Soto Canyon, northeastern Gulf of Mexico June 17, through July 9, 2002 Pensacola, FL to Pensacola, FL

The mid to outer continental shelf off Mississippi-Alabama and off northwest Florida were the focus of US Geological Survey (USGS) multibeam echosounder (MBES) mapping cruises in 2000 and 2001, respectively. These areas were mapped to investigate the extent of "deep-water reefs" first suggested by Ludwick and Walton (1957). The reefs off Mississippi and Alabama were initially described in water depths of 60 to 120 m (Ludwick and Walton, 1957) but the 2000 mapping found reef and hardgrounds to be much more extensive than previously thought (Gardner et al., 2001). The persistent trend of reef-like features along the outer shelf of Mississippi-Alabama suggested the trend might continue along the northwest Florida mid and outer shelf so a MBES-mapping effort was mounted in 2001 to test this suggestion. It is critical to determine the accurate location, geomorphology, and types of the ridges and reefs that occur in this region to understand the Quaternary history of the area and to assess their importance as benthic habitats for fisheries. The 2001 survey found a series of shelf-depth platforms with ridges (possibly reefs) constructed on their surfaces (Gardner et al., 2002). The area known as the "head of De Soto Canyon" is the large unmapped region between the 2000 and 2001 mapped areas. The head of De Soto Canyon is an outer shelf zone with a relatively steep western wall and a much gentler eastern wall. It was unknown prior to this cruise whether the reefs of the Mississippi-Alabama shelf continue eastward into the head of De Soto Canyon and connect with the ridges and reefs mapped on the northwest Florida outer shelf. The existence of carbonate-cemented latest Quaternary to Holocene sandstones along the western wall of the head of De Soto Canyon (Shipp and Hopkins, 1978; Benson et al., 1997; W.W. Schroeder, personnel comm., 2002) is of interest because of the potential benthic habitats they may represent. Precisely georeferenced high-resolution mapping of bathymetry is a fundamental first step in the study of an area suspected to be critical benthic habitats. Morphology is thought to be critical to define the distribution of dominant demersal plankton/planktivores communities. Community structure and trophodynamics of demersal fishes of the outer continental shelf of the northeastern Gulf of Mexico presently are focuses of a major USGS research project. A goal of the project is to answer questions concerning the relative roles played by morphology and surficial geology in controlling biological differentiation. Deep-water ridges, reefs, and outcrops are important because they are fish havens and key spawning sites, and are critical habitats for larval, juvenile, and economically important sport/food fishes.

Gulf of Mexico, head Of De Soto Canyon↗
USGS2020

Evaluation of genetic structuring within GIS‐derived Brook Trout management units

Delineation of management units across broad spatial scales can help to visualize population structuring and identify conservation opportunities. Geographical information system (GIS) approaches can be useful for developing broad‐scale management units, especially when paired with field data that can validate the GIS‐based delineations. Genetic data can be useful for evaluating whether management units accurately represent population structuring. The Eastern Brook Trout Joint Venture, a regionwide collaborative group, delineated patch‐based management units for Brook Trout Salvelinus fontinalis by using GIS approaches to inform conservation strategies across the eastern United States. The objectives of this research were to (1) evaluate how well the patches predicted Brook Trout genetic structuring in Connecticut, USA; (2) modify the patches as needed to represent contemporary genetic structuring; and (3) identify catchment‐ and patch‐scale riverscape characteristics that predict genetic diversity. Patches with dams and high levels of upstream impervious surfaces (>3%) had increased intrapatch genetic structuring, which we incorporated into our revised patch delineation algorithm. Patch area and catchment area were the best predictors of genetic diversity, suggesting the importance of maintaining connectivity and incorporating patch‐scale processes into conservation actions. The modified patch layer could be used as the basis for Brook Trout management units to help predict population structuring in the absence of watershed‐scale genetic data, allowing opportunities for Brook Trout conservation to be identified.

Connecticut↗
USGS2025

Estimating recruitment of Largemouth Bass to exceptional weights using angler-reported catches

ABSTRACT Objective Although most facets of Largemouth Bass Micropterus nigricans ecology have been researched, the upper tiers of weight distributions (i.e., ≥3.6 kg; herein, “lunkers”) have received little attention due to the challenges of collecting sufficient sample sizes. Our aim was to estimate Largemouth Bass recruitment to higher weights after reaching 3.6 kg and to identify factors correlated with such recruitment. Methods We used an online database of angler-reported catches to investigate recruitment of Largemouth Bass after reaching lunker size and to identify associated factors. Recruitment was indexed by the slopes of the reversed cumulative counts relative to increasing weights, with gentler negative slopes indicating higher recruitment. The influence of environmental variables on these slopes identified the factors associated with recruitment. Results An average of 20% (minimum = 4%; maximum = 45%) of lunker bass were estimated to recruit after reaching 3.6 kg. When expanded, these estimates revealed that recruitment from 3.6 to 4.5 kg averaged 23.5% and recruitment from 3.6 to 5.9 kg averaged 2.5%. The observed recruitment was positively correlated with the frequency of Florida Bass M. salmoides alleles in the population and was inversely correlated with human population densities in the vicinity of the reservoir and with chlorophyll- a concentrations in the environment. Conclusions Recruitment of Largemouth Bass after reaching 3.6 kg appears to require a nuanced equilibrium enabled by a higher frequency of Florida Bass alleles, a remote location of the fishery, and a reservoir trophic state that balances adequate environmental conditions and food supply.

North American Journal of Fisheries Management↗
USGS2019

Age truncation of alewife in Lake Michigan

Empirical evidence has shown increased variability in harvest and recruitment of exploited fish populations, which can result directly from exploitation or indirectly from interactions between external drivers and the internal dynamics of age-structured populations. We investigated whether predation in a freshwater system could affect a prey fish population, in the same way fishing affects targeted populations. Using fishery-independent trawl survey data and a suite of quantitative indicators, we evaluated changes in the alewife population in Lake Michigan. Our results provide evidence for a reduction in the mean spawner age, a reduction in the diversity of age classes and the distribution of biomass across them, and increased variability in the proportion of first time spawners in the spawning stock. We used wavelet analysis and estimates of lifetime egg production to demonstrate how the alewife population displays behaviors of instability as the overall biomass declines. Our results provide evidence that predation pressure can influence prey fish populations in a similar manner to fishing on harvested populations, and that conservation of a broad reproducing age structure is likely to be important for buffering against adverse environmental fluctuations and for sustainable management of fish populations.

Lake Michigan↗
USGS2026

A framework for estimating age and growth using sibship relationships inferred from genomic data

Pedigree reconstruction based on genomic data offers a novel approach for estimating age and growth in wild populations. However, frameworks that use reconstructed pedigrees to parameterize growth models have not been available. We developed a sibship age and growth framework and evaluated the approach using simulation and an empirical application to Sea Lamprey ( Petromyzon marinus ) age and growth analysis. Simulation research revealed that the framework may be widely applicable to semelparous fishes. Applicability to iteroparous fishes was constrained to scenarios in which the percentage of multi-age sibling groups was low. Age assignment using the framework was unbiased for sibling groups first captured at younger ages. Age assignment for sibling groups first captured at older ages (after growth rate had substantially slowed) was biased low due to the hierarchal approach that we adopted to estimate sibling group age-at-first capture. However, this did not result in biased growth parameter estimates. Model output allowed for identification of unreliable age assignments. Finally, the empirical application provided evidence that the framework could address knowledge gaps that have been challenging to address with established age and growth methods.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2014

Monitoring fine-sediment volume in the Colorado River ecosystem, Arizona: construction and analysis of digital elevation models

Digital elevation models (DEMs) of eleven 2–5 kilometer reaches of the Colorado River ecosystem (CRE) in Grand Canyon were constructed from repeat bathymetric and topographic surveys collected between August 2000 and December 2004. The DEMs will be used by researchers to study the effects of Glen Canyon Dam (GCD) operations on the sediment resources of the CRE in Grand Canyon by quantifying morphological changes and sediment transfer within and among the study reaches. Airborne surveys collected light detection and ranging (lidar) and photogrammetric data, whereas ground topographic and bathymetric data were collected simultaneously on river trips. Surveys were conducted in August 2000, September 2000, May 2002, May 2004, November 2004, and December 2004. The aerial lidar and photogrammetric data were merged with the ground topographic and bathymetric data to create DEMs of the study areas with a grid resolution of 1 meter. For each survey period, the vertical component of uncertainty (specifically, reproducibility or precision) was estimated for each data type (lidar/photogrammetry, ground surveys, bathymetry) and for two different types of bed-surface texture (smooth and rough). The resulting DEMs from this study are a valuable contribution to ongoing efforts in assessing the effects of GCD operations on the CRE. The DEMs can be used to map the spatial characteristics of geomorphic change within the study reaches and to estimate sediment budgets for different time periods by calculating the difference in sediment volume between surveys. In addition, the DEMs provide essential boundary conditions for numerical models of sediment transport and deposition, as well as help define the spatial distribution of habitat for fisheries investigations.

Arizona↗
USGS2002

Protocol for determining bull trout presence

The Western Division of the American Fisheries Society was requested to develop protocols for determining presence/absence and potential habitat suitability for bull trout. The general approach adopted is similar to the process for the marbled murrelet, whereby interim guidelines are initially used, and the protocols are subsequently refined as data are collected. Current data were considered inadequate to precisely identify suitable habitat but could be useful in stratifying sampling units for presence/absence surveys. The presence/absence protocol builds on previous approaches (Hillman and Platts 1993; Bonar et al. 1997), except it uses the variation in observed bull trout densities instead of a minimum threshold density and adjusts for measured differences in sampling efficiency due to gear types and habitat characteristics. The protocol consists of: 1. recommended sample sizes with 80% and 95% detection probabilities for juvenile and resident adult bull trout for day and night snorkeling and electrofishing adjusted for varying habitat characteristics for 50m and 100m sampling units, 2. sampling design considerations, including possible habitat characteristics for stratification, 3. habitat variables to be measured in the sampling units, and 3. guidelines for training sampling crews. Criteria for habitat strata consist of coarse, watershed-scale characteristics (e.g., mean annual air temperature) and fine-scale, reach and habitat-specific features (e.g., water temperature, channel width). The protocols will be revised in the future using data from ongoing presence/absence surveys, additional research on sampling efficiencies, and development of models of habitat/species occurrence.

Report↗
USGS2000

Mercury in the Sudbury River (Massachusetts, USA): pollution history and a synthesis of recent research

We review the transport, fate, and bioavailability of mercury in the Sudbury River, topics addressed in the following five papers. Mercury entered the river from an industrial complex (site) that operated from 1917 to 1978. Rates of mercury accumulation in sediment cores from two reservoirs just downstream from the site decreased soon after industrial operations ended and have decreased further since capping of contaminated soils at the site in 1991. The reservoirs contained the most contaminated sediments (some exceeding 50 mu g Hg.g dry weight(-1)) and were depositional sinks for total mercury. Methyl mercury concentrations in biota did not parallel concentrations of total mercury in the sediments to which organisms were exposed, experimentally or as residents. Contaminated wetlands within the floodplain about 25 km downstream from the site produced and exported methyl mercury from inorganic mercury that had originated from the site. Natural burial processes have gradually decreased the quantity of sedimentary mercury available for methylation within the reservoirs, whereas mercury in the lesser contaminated wetlands farther downstream has remained more available for transport, methylation, and entry into food webs.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2014

Potential population and assemblage influences of non-native trout on native nongame fish in Nebraska headwater streams

Non-native trout are currently stocked to support recreational fisheries in headwater streams throughout Nebraska. The influence of non-native trout introductions on native fish populations and their role in structuring fish assemblages in these systems is unknown. The objectives of this study were to determine (i) if the size structure or relative abundance of native fish differs in the presence and absence of non-native trout, (ii) if native fish-assemblage structure differs in the presence and absence of non-native trout and (iii) if native fish-assemblage structure differs across a gradient in abundances of non-native trout. Longnose dace Rhinichthys cataractae were larger in the presence of brown trout Salmo trutta and smaller in the presence of rainbow trout Oncorhynchus mykiss compared to sites without trout. There was also a greater proportion of larger white suckers Catostomus commersonii in the presence of brown trout. Creek chub Semotilus atromaculatus and fathead minnow Pimephales promelas size structures were similar in the presence and absence of trout. Relative abundances of longnose dace, white sucker, creek chub and fathead minnow were similar in the presence and absence of trout, but there was greater distinction in native fish-assemblage structure between sites with trout compared to sites without trout as trout abundances increased. These results suggest increased risk to native fish assemblages in sites with high abundances of trout. However, more research is needed to determine the role of non-native trout in structuring native fish assemblages in streams, and the mechanisms through which introduced trout may influence native fish populations.

Nebraska↗
USGS2025

Drowned river mouth lakes are winter foraging habitats for the expanding Lake Michigan cisco Coregonus artedi population

Characterizing fish movements is required for understanding habitat use, energy flow, and trophic structure and can inform fisheries management. Drowned river mouth (DRM) lakes are productive inland habitats in the Laurentian Great Lakes basin used by migratory fishes. Despite recognition of their ecological connections to the Great Lakes, the value of DRM lakes as seasonal habitats is not well understood for many fishes. One such species, cisco Coregonus artedi , has recently expanded in Lake Michigan from near extirpation to higher relative abundances in the northeastern portion of the lake. Cisco are recreationally harvested in some DRM lakes during winter, but little is known about cisco movement patterns and ecology. In winter 2022 and 2023, we collected cisco from three DRM lakes along the eastern shores of Lake Michigan (Lake Charlevoix, Portage Lake, Muskegon Lake) to characterize genetics, morphometrics, and diets. We also implanted telemetry tags in 20 cisco collected in Lake Charlevoix to examine movement patterns and determine DRM lake residency (i.e., seasonal vs. year-round). We found no consistent genetic or morphometric differentiation across DRM lakes, suggesting that recolonization began from a single stock. Fish were the only diet item found in cisco guts collected during winter months. Movement patterns from Lake Charlevoix indicated strong spawning site fidelity to Grand Traverse Bay as well as non-spawning site fidelity. However, given the presence of cisco in southern DRM lakes and some site-specific differences in morphometrics, managers could benefit from further research to determine whether spawning occurs in southern Lake Michigan.

Journal of Great Lakes Research↗
USGS2024

Acute toxicity of the lampricide 4-nitro-3-(trifluoromethyl)phenol to the Mussel (Obovaria subrotunda), its host (Percina maculata), and a surrogate mussel species (Obovaria olivaria)

The risk of lampricide applications (such as 4-nitro-3-[trifluoromethyl]phenol [TFM]) to nontarget fauna continues to be a concern within the Great Lakes Fishery Commission Sea Lamprey Control Program, especially among imperiled aquatic species—such as native freshwater mussels. The Grand River (Ohio, USA) is routinely treated for larval sea lampreys ( Petromyzon marinus ), and this river contains populations of the federally threatened mussel Obovaria subrotunda . Given this spatial overlap, information on the sensitivity of O. subrotunda to TFM is needed. Our objectives were to assess the toxicity of TFM to (1) adult Obovaria olivaria (a surrogate for O. subrotunda ), (2) glochidial larvae of O. olivaria and O. subrotunda , (3) juveniles of O. olivaria and O. subrotunda , and (4) adult Percina maculata (host for O. subrotunda glochidia). In acute toxicity tests, TFM was not toxic to glochidia and adult mussels at exposure concentrations that exceed typical treatment rates. Although significant dose–response relationships were observed in hosts and juveniles, survival was ≥95% ( Percina maculata ), ≥93% ( O. olivaria ), and ≥74% ( O. subrotunda ) at typical treatment rates. However, the steep slope of these dose–response relationships indicates that an approximately 20% difference in the treatment level can result in nearly an order of magnitude difference in survival. Collectively, these data indicate that routine sea lamprey control operations are unlikely to acutely affect these species or their host. However, given that many mussel species are long-lived (30–100 years), the risks posed by lampricide treatments in the Great Lakes would be further informed by research on the potential long-term effects of lampricides on imperiled species. Environ Toxicol Chem 2024;00:1–8. Published 2024. This article is a U.S. Government work and is in the public domain in the USA.

Environmental Toxicology & Chemistry↗
USGS2008

Conservation genetics of Lake Superior brook trout: Issues, questions, and directions

Parallel efforts by several genetic research groups have tackled common themes relating to management concerns about and recent rehabilitation opportunities for coaster brook trout Salvelinus fontinalis in Lake Superior. The questions that have been addressed include the evolutionary and genetic status of coaster brook trout, the degree of relatedness among coaster populations and their relationship to riverine tributary brook trout populations, and the role and effectiveness of stocking in maintaining and restoring coasters to Lake Superior. Congruent genetic results indicate that coasters are an ecotype (life history variant) rather than an evolutionarily significant unit or genetically distinct strain. Regional structure exists among brook trout stocks, coasters being produced from local populations. Introgression of hatchery genes into wild populations appears to vary regionally and may relate to local population size, habitat integrity, and anthropogenic pressures. Tracking the genetic diversity and integrity associated with captive breeding programs is helping to ensure that the fish used for stocking are representative of their source populations and appropriate for rehabilitation efforts. Comparative analysis of shared samples among collaborating laboratories is enabling standardization of genotype scoring and interpretation as well as the development of a common toolkit for assessing genetic structure and diversity. Incorporation of genetic data into rehabilitation projects will facilitate monitoring efforts and subsequent adaptive management. Together, these multifaceted efforts provide comprehensive insights into the biology of coaster brook trout and enhance restoration options. ?? Copyright by the American Fisheries Society 2008.

Conference Paper↗
USGS2016

Conservation of native Pacific trout diversity in western North America

Pacific trout Oncorhynchus spp. in western North America are strongly valued in ecological, socioeconomic, and cultural views, and have been the subject of substantial research and conservation efforts. Despite this, the understanding of their evolutionary histories, overall diversity, and challenges to their conservation is incomplete. We review the state of knowledge on these important issues, focusing on Pacific trout in the genus Oncorhynchus. Although most research on salmonid fishes emphasizes Pacific salmon, we focus on Pacific trout because they share a common evolutionary history, and many taxa in western North America have not been formally described, particularly in the southern extent of their ranges. Research in recent decades has led to the revision of many hypotheses concerning the origin and diversification of Pacific trout throughout their range. Although there has been significant success at addressing past threats to Pacific trout, contemporary and future threats represented by nonnative species, land and water use activities, and climate change pose challenges and uncertainties. Ultimately, conservation of Pacific trout depends on how well these issues are understood and addressed, and on solutions that allow these species to coexist with a growing scope of human influences.

Fisheries↗