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At least 937 records · Page 52Linked to original sources
USGS2007

Documentation of a Conduit Flow Process (CFP) for MODFLOW-2005

This report documents the Conduit Flow Process (CFP) for the modular finite-difference ground-water flow model, MODFLOW-2005. The CFP has the ability to simulate turbulent ground-water flow conditions by: (1) coupling the traditional ground-water flow equation with formulations for a discrete network of cylindrical pipes (Mode 1), (2) inserting a high-conductivity flow layer that can switch between laminar and turbulent flow (Mode 2), or (3) simultaneously coupling a discrete pipe network while inserting a high-conductivity flow layer that can switch between laminar and turbulent flow (Mode 3). Conduit flow pipes (Mode 1) may represent dissolution or biological burrowing features in carbonate aquifers, voids in fractured rock, and (or) lava tubes in basaltic aquifers and can be fully or partially saturated under laminar or turbulent flow conditions. Preferential flow layers (Mode 2) may represent: (1) a porous media where turbulent flow is suspected to occur under the observed hydraulic gradients; (2) a single secondary porosity subsurface feature, such as a well-defined laterally extensive underground cave; or (3) a horizontal preferential flow layer consisting of many interconnected voids. In this second case, the input data are effective parameters, such as a very high hydraulic conductivity, representing multiple features. Data preparation is more complex for CFP Mode 1 (CFPM1) than for CFP Mode 2 (CFPM2). Specifically for CFPM1, conduit pipe locations, lengths, diameters, tortuosity, internal roughness, critical Reynolds numbers (NRe), and exchange conductances are required. CFPM1, however, solves the pipe network equations in a matrix that is independent of the porous media equation matrix, which may mitigate numerical instability associated with solution of dual flow components within the same matrix. CFPM2 requires less hydraulic information and knowledge about the specific location and hydraulic properties of conduits, and turbulent flow is approximated by modifying horizontal conductances assembled by the Block-Centered Flow (BCF), Layer-Property Flow (LPF), or Hydrogeologic-Unit Flow Packages (HUF) of MODFLOW-2005. For both conduit flow pipes (CFPM1) and preferential flow layers (CFPM2), critical Reynolds numbers are used to determine if flow is laminar or turbulent. Due to conservation of momentum, flow in a laminar state tends to remain laminar and flow in a turbulent state tends to remain turbulent. This delayed transition between laminar and turbulent flow is introduced in the CFP, which provides an additional benefit of facilitating convergence of the computer algorithm during iterations of transient simulations. Specifically, the user can specify a higher critical Reynolds number to determine when laminar flow within a pipe converts to turbulent flow, and a lower critical Reynolds number for determining when a pipe with turbulent flow switches to laminar flow. With CFPM1, the Hagen-Poiseuille equation is used for laminar flow conditions and the Darcy-Weisbach equation is applied to turbulent flow conditions. With CFPM2, turbulent flow is approximated by reducing the laminar hydraulic conductivity by a nonlinear function of the Reynolds number, once the critical head difference is exceeded. This adjustment approximates the reductions in mean velocity under turbulent ground-water flow conditions.

Techniques and Methods↗
USGS2009

The Farm Process Version 2 (FMP2) for MODFLOW-2005 - Modifications and Upgrades to FMP1

The ability to dynamically simulate the integrated supply-and-demand components of irrigated agricultural is needed to thoroughly understand the interrelation between surface water and groundwater flow in areas where the water-use by vegetation is an important component of the water budget. To meet this need, the computer program Farm Process (FMP1) was updated and refined for use with the U.S. Geological Survey's MODFLOW-2005 groundwater-flow model, and is referred to as MF2005-FMP2. The updated program allows the simulation, analysis, and management of nearly all components of human and natural water use. MF2005-FMP2 represents a complete hydrologic model that fully links the movement and use of groundwater, surface water, and imported water for water consumption of irrigated agriculture, but also of urban use, and of natural vegetation. Supply and demand components of water use are analyzed under demand-driven and supply-constrained conditions. From large- to small-scale settings, the MF2005-FMP2 has the unique set of capabilities to simulate and analyze historical, present, and future conditions. MF2005-FMP2 facilitates the analysis of agricultural water use where little data is available for pumpage, land use, or agricultural information. The features presented in this new version of FMP2 along with the linkages to the Streamflow Routing (SFR), Multi-Node Well (MNW), and Unsaturated Zone Flow (UZF) Packages prevents mass loss to an open system and helps to account for 'all of the water everywhere and all of the time'. The first version, FMP1 for MODFLOW-2000, is limited to (a) transpiration uptake from unsaturated root zones, (b) on-farm efficiency defined solely by farm and not by crop type, (c) a simulation of water use and returnflows related only to irrigated agriculture and not also to non-irrigated vegetation, (d) a definition of consumptive use as potential crop evapotranspiration, (e) percolation being instantly recharged to the uppermost active aquifer, (f) automatic routing of returnflow from runoff either to reaches of tributary stream segments adjacent to a farm or to one reach nearest to the farm's lowest elevation, (g) farm-well pumping from cell locations regardless of whether an irrigation requirement from these cells exists or not, and (h) specified non-routed water transfers from an undefined source outside the model domain. All of these limitations are overcome in MF2005-FMP2. The new features include (a) simulation of transpiration uptake from variably saturated, fully saturated, or ponded root zones (for example, for crops like rice or riparian vegetation), (b) definition of on-farm efficiency not only by farm but also by crop, (c) simulation of water use and returnflow from non-irrigated vegetation (for example, rain-fed agriculture or native vegetation), (d) use of crop coefficients and reference evapotranspiration, (e) simulation of the delay between percolation from farms through the unsaturated zone and recharge into the uppermost active aquifer by linking FMP2 to the UZF Package, (f) an option to manually control the routing of returnflow from farm runoff to streams, (g) an option to limit pumping to wells located only in cells where an irrigation requirement exists, and (h) simulation of water transfers to farms from a series of well fields (for example, recovery well field of an aquifer-storage-and-recovery system, ASR). In addition to the output of an economic budget for each farm between irrigation demand and supply ('Farm Demand and Supply Budget' in FMP1), a new output option called 'Farm Budget' was created for FMP2, which allows the user to track all physical flows into and out of a water accounting unit at all times. Such a unit can represent individual farms, farming districts, natural areas, or urban areas. The example model demonstrates the application of MF2005-FMP2 with delayed recharge through an unsaturated zone, rejected infiltration in a riparian area, changes in de

Techniques and Methods↗
USGS2009

GWM-2005 - A Groundwater-Management Process for MODFLOW-2005 with Local Grid Refinement (LGR) Capability

This report describes the Groundwater-Management (GWM) Process for MODFLOW-2005, the 2005 version of the U.S. Geological Survey modular three-dimensional groundwater model. GWM can solve a broad range of groundwater-management problems by combined use of simulation- and optimization-modeling techniques. These problems include limiting groundwater-level declines or streamflow depletions, managing groundwater withdrawals, and conjunctively using groundwater and surface-water resources. GWM was initially released for the 2000 version of MODFLOW. Several modifications and enhancements have been made to GWM since its initial release to increase the scope of the program's capabilities and to improve its operation and reporting of results. The new code, which is called GWM-2005, also was designed to support the local grid refinement capability of MODFLOW-2005. Local grid refinement allows for the simulation of one or more higher resolution local grids (referred to as child models) within a coarser grid parent model. Local grid refinement is often needed to improve simulation accuracy in regions where hydraulic gradients change substantially over short distances or in areas requiring detailed representation of aquifer heterogeneity. GWM-2005 can be used to formulate and solve groundwater-management problems that include components in both parent and child models. Although local grid refinement increases simulation accuracy, it can also substantially increase simulation run times.

Techniques and Methods↗
USGS2011

Documentation for the State Variables Package for the Groundwater-Management Process of MODFLOW-2005 (GWM-2005)

Many groundwater-management problems are concerned with the control of one or more variables that reflect the state of a groundwater-flow system or a coupled groundwater/surface-water system. These system state variables include the distribution of heads within an aquifer, streamflow rates within a hydraulically connected stream, and flow rates into or out of aquifer storage. This report documents the new State Variables Package for the Groundwater-Management Process of MODFLOW-2005 (GWM-2005). The new package provides a means to explicitly represent heads, streamflows, and changes in aquifer storage as state variables in a GWM-2005 simulation. The availability of these state variables makes it possible to include system state in the objective function and enhances existing capabilities for constructing constraint sets for a groundwater-management formulation. The new package can be used to address groundwater-management problems such as the determination of withdrawal strategies that meet water-supply demands while simultaneously maximizing heads or streamflows, or minimizing changes in aquifer storage. Four sample problems are provided to demonstrate use of the new package for typical groundwater-management applications.

Techniques and Methods↗
USGS2013

Advective transport observations with MODPATH-OBS--documentation of the MODPATH observation process

The MODPATH-OBS computer program described in this report is designed to calculate simulated equivalents for observations related to advective groundwater transport that can be represented in a quantitative way by using simulated particle-tracking data. The simulated equivalents supported by MODPATH-OBS are (1) distance from a source location at a defined time, or proximity to an observed location; (2) time of travel from an initial location to defined locations, areas, or volumes of the simulated system; (3) concentrations used to simulate groundwater age; and (4) percentages of water derived from contributing source areas. Although particle tracking only simulates the advective component of conservative transport, effects of non-conservative processes such as retardation can be approximated through manipulation of the effective-porosity value used to calculate velocity based on the properties of selected conservative tracers. This program can also account for simple decay or production, but it cannot account for diffusion. Dispersion can be represented through direct simulation of subsurface heterogeneity and the use of many particles. MODPATH-OBS acts as a postprocessor to MODPATH, so that the sequence of model runs generally required is MODFLOW, MODPATH, and MODPATH-OBS. The version of MODFLOW and MODPATH that support the version of MODPATH-OBS presented in this report are MODFLOW-2005 or MODFLOW-LGR, and MODPATH-LGR. MODFLOW-LGR is derived from MODFLOW-2005, MODPATH 5, and MODPATH 6 and supports local grid refinement. MODPATH-LGR is derived from MODPATH 5. It supports the forward and backward tracking of particles through locally refined grids and provides the output needed for MODPATH_OBS. For a single grid and no observations, MODPATH-LGR results are equivalent to MODPATH 5. MODPATH-LGR and MODPATH-OBS simulations can use nearly all of the capabilities of MODFLOW-2005 and MODFLOW-LGR; for example, simulations may be steady-state, transient, or a combination. Though the program name MODPATH-OBS specifically refers to observations, the program also can be used to calculate model prediction of observations. MODPATH-OBS is primarily intended for use with separate programs that conduct sensitivity analysis, data needs assessment, parameter estimation, and uncertainty analysis, such as UCODE_2005, and PEST. In many circumstances, refined grids in selected parts of a model are important to simulated hydraulics, detailed inflows and outflows, or other system characteristics. MODFLOW-LGR and MODPATH-LGR support accurate local grid refinement in which both mass (flows) and energy (head) are conserved across the local grid boundary. MODPATH-OBS is designed to take advantage of these capabilities. For example, particles tracked between a pumping well and a nearby stream, which are simulated poorly if a river and well are located in a single large grid cell, can be simulated with improved accuracy using a locally refined grid in MODFLOW-LGR, MODPATH-LGR, and MODPATH-OBS. The locally-refined-grid approach can provide more accurate simulated equivalents to observed transport between the well and the river. The documentation presented here includes a brief discussion of previous work, description of the methods, and detailed descriptions of the required input files and how the output files are typically used.

Techniques and Methods↗
USGS2022

hical—The HiRISE radiometric calibration software developed within the ISIS3 planetary image processing suite

Introduction This report summarizes the software and algorithms that are used to calibrate images returned by the High Resolution Imaging Science Experiment (HiRISE) camera onboard the Mars Reconnaissance Orbiter (MRO) spacecraft. The instrument design and data processing methods are summarized below, followed by a description of relevant calibration data and details of the calibration procedure. In this document, we describe the software that uses those coefficients and matrices to radiometrically calibrate HiRISE data. This software is included in version 3 of the Integrated Software for Imagers and Spectrometers (ISIS3), which is developed and maintained by the U.S. Geological Survey Astrogeology Science Center in Flagstaff, Ariz., for the international planetary science community via funding from the National Aeronautics and Space Administration. ISIS3 is freely available to the scientific community and can be obtained at http://isis.astrogeology.usgs.gov/index.html . Support for ISIS3 is provided at https://github.com/USGS-Astrogeology/ISIS3 .

Techniques and Methods↗
USGS2002

Chapter A5. Processing of water samples

The National Field Manual for the Collection of Water-Quality Data (National Field Manual) describes protocols and provides guidelines for U.S. Geological Survey (USGS) personnel who collect data used to assess the quality of the Nation's surface-water and ground-water resources. This chapter addresses methods to be used in processing water samples to be analyzed for inorganic and organic chemical substances, including the bottling of composite, pumped, and bailed samples and subsamples; sample filtration; solid-phase extraction for pesticide analyses; sample preservation; and sample handling and shipping. Each chapter of the National Field Manual is published separately and revised periodically. Newly published and revised chapters will be announced on the USGS Home Page on the World Wide Web under 'New Publications of the U.S. Geological Survey.'

Techniques of Water-Resources Investigations↗
USGS1984

Computer model of one-dimensional equilibrium controlled sorption processes

A numerical solution to the one-dimensional solute-transport equation with equilibrium-controlled sorption and a first-order irreversible-rate reaction is presented. The computer code is written in FORTRAN language, with a variety of options for input and output for user ease. Sorption reactions include Langmuir, Freundlich, and ion-exchange, with or without equal valance. General equations describing transport and reaction processes are solved by finite-difference methods, with nonlinearities accounted for by iteration. Complete documentation of the code, with examples, is included. (USGS)

Water-Resources Investigations Report↗
USGS1995

Shallow infiltration processes at Yucca Mountain, Nevada: neutron logging data 1984-93

To determine site suitability of Yucca Mountain, Nevada, as a potential high-level radioactive waste repository, a study was devised to characterize net infiltration. This study involves a detailed data set produced from 99 neutron boreholes that consisted of volumetric water-content readings with depth from 1984 through 1993 at Yucca Mountain. Boreholes were drilled with minimal disturbance to the surrounding soil or rock in order to best represent field conditions. Boreholes were located in topographic positions representing infiltration zones identified as ridgetops, sideslopes, terraces, and active channels. Through careful field calibration, neutron moisture logs, collected on a monthly basis and representing most of the areal locations at Yucca Mountain, illustrated that the depth of penetration of seasonal moisture, important for escaping loss to evapotranspiration, was influenced by several factors. It was increased (1) by thin soil cover, especially in locations where thin soil is underlain by fractured bedrock; (2) on ridgetops; and (3) during the winter when evapotranspiration is low and runoff is less frequent. This data set helps to provide a seasonal and areal distribution of changes in volumetric water content with which to assess hydrologic processes contributing to net infiltration.

Nevada↗
USGS1995

Geochemical processes and the effects of natural organic solutes on the solubility of selenium in coal-mine backfill samples from the Powder River basin, Wyoming

Geochemical processes and the effects of natural organic solutes on the solubility of selenium in coal-mine backfill aquifers were investigated. Backfill and ground-water samples were collected at coal mines in the Powder River Basin, Wyoming. Backfill was generally dominated by aluminum (14,400 to 49,000 mg/kg (milligrams per kilogram)), iron (3,330 to 23,200 mg/kg), and potassium (7,950 to 18,000 mg/kg). Backfill saturated-paste selenium concentrations ranged from 1 to 156 mg/kg (microsiemens per kilogram). Ground-water total selenium concentrations ranged from 3 to 125 mg/L. Dissolved organic carbon in all ground-water samples was dominated by hydrophobic and hydrophilic acids (38 to 84 percent). Selenite sorption/desorption experiments were conducted using background solutions of distilled-deionized water, 0.1 molar calcium chloride, and isolated hydrophobic and hydrophilic acids. Selenite sorption was larger when 0.1 molar calcium chloride was used. The addition of hydrophilic acid decreased selenite sorption more than the addition of hydrophobic acids. Geochemical modelling was used to predict the solid phases controlling dissolved selenium concentrations and to evaluate the effects of dissolved organic carbon on selenium solubility. Results suggested that 55 to 90 percent of selenium in backfill precipitation/dissolution extracts was dominated by magnesium selenate ion pairs. Dissolved organic carbon had little effect on selenium speciation. A redox chamber was constructed to control Eh and pH in water and backfill-core sample suspensions. The response of selenite and selenate in water samples to redox conditions did not follow thermodynamic predictions. Reduction of selenate in water samples did not occur at any of the redox levels tested.

Water-Resources Investigations Report↗
USGS2021

Sea star wasting disease pathology in Pisaster ochraceus shows a basal-to-surface process affecting color phenotypes differently

Sea star wasting disease (SSWD) refers to a suite of poorly described non-specific clinical signs including abnormal posture, epidermal ulceration, and limb autotomy (sloughing) causing mortalities of over 20 species of sea stars and subsequent ecological shifts throughout the northeastern Pacific. While SSWD is widely assumed to be infectious, with environmental conditions facilitating disease progression, few data exist on cellular changes associated with the disease. This is unfortunate, because such observations could inform mechanisms of disease pathogenesis and host susceptibility. Here, we replicated SSWD by exposing captive Pisaster ochraceus to a suite of non-infectious organic substances and show that development of gross lesions is a basal-to-surface process involving inflammation (e.g. infiltration of coelomocytes) of ossicles and mutable collagenous tissue, leading to epidermal ulceration. Affected sea stars also manifest increases in a heretofore undocumented coelomocyte type, spindle cells, that might be a useful marker of inflammation in this species. Finally, compared to purple morphs, orange P. ochraceus developed more severe lesions but survived longer. Longer-lived, and presumably more visible, severely-lesioned orange sea stars could have important demographic implications in terms of detectability of lesioned animals in the wild and measures of apparent prevalence of disease.

Diseases of Aquatic Organisms↗
USGS1999

Processes governing phytoplankton blooms in estuaries. II: The role of horizontal transport

The development and distribution of phytoplankton blooms in estuaries are functions of both local conditions (i.e. the production-loss balance for a water column at a particular spatial location) and large-scale horizontal transport. In this study, the second of a 2-paper series, we use a depth-averaged hydrodynamic-biological model to identify transport-related mechanisms impacting phytoplankton biomass accumulation and distribution on a system level. We chose South San Francisco Bay as a model domain, since its combination of a deep channel surrounded by broad shoals is typical of drowned-river estuaries. Five general mechanisms involving interaction of horizontal transport with variability in local conditions are discussed. Residual (on the order of days to weeks) transport mechanisms affecting bloom development and location include residence time/export, import, and the role of deep channel regions as conduits for mass transport. Interactions occurring on tidal time scales, i.e. on the order of hours) include the phasing of lateral oscillatory tidal flow relative to temporal changes in local net phytoplankton growth rates, as well as lateral sloshing of shoal-derived biomass into deep channel regions during ebb and back into shallow regions during flood tide. Based on these results, we conclude that: (1) while local conditions control whether a bloom is possible, the combination of transport and spatial-temporal variability in local conditions determines if and where a bloom will actually occur; (2) tidal-time-scale physical-biological interactions provide important mechanisms for bloom development and evolution. As a result of both subtidal and tidal-time-scale transport processes, peak biomass may not be observed where local conditions are most favorable to phytoplankton production, and inherently unproductive areas may be regions of high biomass accumulation.

Marine Ecology Progress Series↗
USGS2022

Hydrologic controls on peat permafrost and carbon processes: New insights from past and future modeling

Soil carbon (C) in permafrost peatlands is vulnerable to decomposition with thaw under a warming climate. The amount and form of C loss likely depends on the site hydrology following permafrost thaw, but antecedent conditions during peat accumulation are also likely important. We test the role of differing hydrologic conditions on rates of peat accumulation, permafrost formation, and response to warming at an Arctic tundra fen using a process-based model of peatland dynamics in wet and dry landscape settings that persist from peat initiation in the mid-Holocene through future simulations to 2100 CE and 2300 CE. Climate conditions for both the wet and dry landscape settings are driven by the same downscaled TraCE-21ka transient paleoclimate simulations and CCSM4 RCP8.5 climate drivers. The landscape setting controlled the rates of peat accumulation, permafrost formation and the response to climatic warming and permafrost thaw. The dry landscape scenario had high rates of initial peat accumulation (11.7 ± 3.4 mm decade −1 ) and rapid permafrost aggradation but similar total C stocks as the wet landscape scenario. The wet landscape scenario was more resilient to 21st century warming temperatures than the dry landscape scenario and showed 60% smaller C losses and 70% more new net peat C additions by 2100 CE. Differences in the modeled responses indicate the largest effect is related to the landscape setting and basin hydrology due to permafrost controls on decomposition, suggesting an important sensitivity to changing runoff patterns. These subtle hydrological effects will be difficult to capture at circumpolar scales but are important for the carbon balance of permafrost peatlands under future climate warming.

Frontiers in Environmental Science↗
USGS2018

Rhizophagy cycle: An oxidative process in plants for nutrient extraction from symbiotic microbes

In this paper, we describe a mechanism for the transfer of nutrients from symbiotic microbes (bacteria and fungi) to host plant roots that we term the ‘rhizophagy cycle.’ In the rhizophagy cycle, microbes alternate between a root intracellular endophytic phase and a free-living soil phase. Microbes acquire soil nutrients in the free-living soil phase; nutrients are extracted through exposure to host-produced reactive oxygen in the intracellular endophytic phase. We conducted experiments on several seed-vectored microbes in several host species. We found that initially the symbiotic microbes grow on the rhizoplane in the exudate zone adjacent the root meristem. Microbes enter root tip meristem cells—locating within the periplasmic spaces between cell wall and plasma membrane. In the periplasmic spaces of root cells, microbes convert to wall-less protoplast forms. As root cells mature, microbes continue to be subjected to reactive oxygen (superoxide) produced by NADPH oxidases (NOX) on the root cell plasma membranes. Reactive oxygen degrades some of the intracellular microbes, also likely inducing electrolyte leakage from microbes—effectively extracting nutrients from microbes. Surviving bacteria in root epidermal cells trigger root hair elongation and as hairs elongate bacteria exit at the hair tips, reforming cell walls and cell shapes as microbes emerge into the rhizosphere where they may obtain additional nutrients. Precisely what nutrients are transferred through rhizophagy or how important this process is for nutrient acquisition is still unknown.

Microorganisms↗
USGS2008

Relationship between remotely-sensed vegetation indices, canopy attributes and plant physiological processes: What vegetation indices can and cannot tell us about the landscape

Vegetation indices (VIs) are among the oldest tools in remote sensing studies. Although many variations exist, most of them ratio the reflection of light in the red and NIR sections of the spectrum to separate the landscape into water, soil, and vegetation. Theoretical analyses and field studies have shown that VIs are near-linearly related to photosynthetically active radiation absorbed by a plant canopy, and therefore to light-dependent physiological processes, such as photosynthesis, occurring in the upper canopy. Practical studies have used time-series VIs to measure primary production and evapotranspiration, but these are limited in accuracy to that of the data used in ground truthing or calibrating the models used. VIs are also used to estimate a wide variety of other canopy attributes that are used in Soil-Vegetation-Atmosphere Transfer (SVAT), Surface Energy Balance (SEB), and Global Climate Models (GCM). These attributes include fractional vegetation cover, leaf area index, roughness lengths for turbulent transfer, emissivity and albedo. However, VIs often exhibit only moderate, non-linear relationships to these canopy attributes, compromising the accuracy of the models. We use case studies to illustrate the use and misuse of VIs, and argue for using VIs most simply as a measurement of canopy light absorption rather than as a surrogate for detailed features of canopy architecture. Used this way, VIs are compatible with “Big Leaf” SVAT and GCMs that assume that canopy carbon and moisture fluxes have the same relative response to the environment as any single leaf, simplifying the task of modeling complex landscapes.

Arizona↗
USGS2020

Timescale methods for simplifying, understanding and modeling biophysical and water quality processes in coastal aquatic ecosystems: A review

In this article, we describe the use of diagnostic timescales as simple tools for illuminating how aquatic ecosystems work, with a focus on coastal systems such as estuaries, lagoons, tidal rivers, reefs, deltas, gulfs, and continental shelves. Intending this as a tutorial as well as a review, we discuss relevant fundamental concepts (e.g., Lagrangian and Eulerian perspectives and methods, parcels, particles, and tracers), and describe many of the most commonly used diagnostic timescales and definitions. Citing field-based, model-based, and simple algebraic methods, we describe how physical timescales (e.g., residence time, flushing time, age, transit time) and biogeochemical timescales (e.g., for growth, decay, uptake, turnover, or consumption) are estimated and implemented (sometimes together) to illuminate coupled physical-biogeochemical systems. Multiple application examples are then provided to demonstrate how timescales have proven useful in simplifying, understanding, and modeling complex coastal aquatic systems. We discuss timescales from the perspective of “holism”, the degree of process richness incorporated into them, and the value of clarity in defining timescales used and in describing how they were estimated. Our objective is to provide context, new applications and methodological ideas and, for those new to timescale methods, a starting place for implementing them in their own work.

Water↗
USGS2003

Inorganic nitrogen transformations in the bed of the Shingobee River, Minnesota: Integrating hydrologic and biological processes using sediment perfusion cores

Inorganic N transformations were examined in streambed sediments from the Shingobee River using sediment perfusion cores. The experimental design simulated groundwater-stream water mixing within sediment cores, which provided a well-defined one-dimensional representation of in situ hydrologic conditions. Two distinct hydrologic and chemical settings were preserved in the sediment cores: the lowermost sediments, perfused with groundwater, remained anaerobic during the incubations, whereas the uppermost sediments, perfused with oxic water pumped from the overlying water column, simulated stream water penetration into the bed. The maintenance of oxic and anoxic zones formed a biologically active aerobic-anaerobic interface. Ammonium (NH4+) dissolved in groundwater was transported conservatively through the lower core zone but was removed as it mixed with aerated recycle water. Concurrently, a small quantity of nitrate (NO3-) equaling ???25% of the NH4+ loss was produced in the upper sediments. The NH4+ and NO3- profiles in the uppermost sediments resulted from coupled nitrification-denitrification, because assimilation and sorption were negligible. We hypothesize that anaerobic microsites within the aerated upper sediments supported denitrification. Rates of nitrification and denitrification in the perfusion cores ranged 42-209 and 53-160 mg N m-2 day-1, respectively. The use of modified perfusion cores permitted the identification and quantification of N transformations and verified process control by surface water exchange into the shallow hyporheic zone of the Shingobee River.

Minnesota↗
USGS2005

Radium isotopes in Cayuga Lake, New York: Indicators of inflow and mixing processes

Naturally occurring radium isotopes ( 223 Ra, 224 Ra, 226 Ra, and 228 Ra) were measured in lake and tributary water of Cayuga Lake, New York, during the course of a vernal inflow event in the spring of 2001. A large influx of groundwater, probably from a carbonate aquifer, entered the lake at its extreme southern end early in the vernal inflow event and spread northward, covering an extensive part of the southern end of the lake. The low 228 Ra/ 226 Ra activity ratio of this water mass, compared with bulk lake water, allowed its identification through time. Estimates of mixing with bulk lake water were calculated from changes in the 226Ra content. Groundwater inflow to the lake around the delta of a major tributary was detected on the basis of 223 Ra and 224 Ra activity of lake and tributary water. Inflow of a water mass to the surface of the lake was also detected using 223 Ra and 224 Ra activity. The integrity of this water mass was monitored using short‐lived radium isotopes. Suspended sediment in the lake water is a source of the short‐lived radium isotopes 223 Ra (~2 x 10 −4 dpm L −1 ) and 224 Ra (~3 x x 10 −3 dpm L −1 ), but bottom sediments are a more significant source of 228 Ra. Radium isotopes can be valuable new tools in limnological investigations, allowing detection and monitoring of events and processes such as water inflow and mixing, determining sources of inflowing water, and monitoring introduced water masses as they move within the lake.

New York↗