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USGS2019

The major coral reefs of Maui Nui, Hawai‘i—distribution, physical characteristics, oceanographic controls, and environmental threats

Coral reefs are widely recognized as critical to Hawaiʻi’s economy, food resources, and protection from damaging storm waves. Yet overfishing, land-based pollution, and climate change are threatening the health and sustainability of those reefs, and accordingly, both the Federal and State governments have called for protection and effective management. In 2000, the U.S. Coral Reef Task Force stated that 20 percent of coral reefs should be protected by 2010. In 2016, the Governor of Hawaiʻi committed to effective management of 30 percent of Hawaiian coastal habitats by 2030 to protect coral reefs. At present, the amount of coral protected in the main Hawaiian Islands is less than 1 percent. Most of the large, highly diverse coral reef tracts in the main Hawaiian Islands surround the four islands of Maui, Molokaʻi, Lānaʻi, and Kahoʻolawe, collectively known as Maui Nui. This report provides fundamental information on the location, extent, coral cover, threats, and connectivity of these major coral reef tracts in Maui Nui essential for identifying areas for management and protection. By combining high-resolution bathymetric data with available maps, publications, and satellite and underwater images, nine major coral reef tracts are identified in the coastal waters of Maui Nui. Three very large reef tracts lie along the south side of Molokaʻi, two on the east side of Lānaʻi, and four off Maui. The factors that make these Maui Nui coral reef tracts a major and important resource for Hawaiʻi include their vast size and high coral cover (nearly 16,000 acres of reef, most of which has more than 50 percent live coral cover); diversity of shape, size, and location; and separation between reefs while retaining connectivity via currents. The decline in the health of these coral reefs over the past several decades has been slow but persistent. Punctuation of the decline by large-scale disturbance events, such as the thermal bleaching that occurred in 2015, is accelerating the loss of viable reef areas by an order of magnitude. The economic, cultural, and recreational value of these coral reef tracts highlights the importance of their long-term survival to the local communities and all of Hawaiʻi. There is scientific consensus that increasing pressures from climate change, overfishing, and land-based pollution will virtually assure the continued, and perhaps accelerating, decline of Hawaiʻi’s coral reefs unless action is taken. Information presented in this report, coupled with the results of numerous scientific studies, provides scientific underpinning to help establish a network of large-scale, connected Marine Protected Areas to meet the Federal and State governments’ call for effective management and protection of coral reefs in Maui Nui.

Hawaii↗

USGS2008

Analysis of Dissolved Selenium Loading for Selected Sites in the Lower Gunnison River Basin, Colorado, 1978-2005

Elevated selenium concentrations in streams are a water-quality concern in western Colorado. The U.S. Geologic Survey, in cooperation with the Colorado Department of Public Health and Environment, summarized selenium loading in the Lower Gunnison River Basin to support the development of total maximum daily selenium loads at sites that represent the cumulative contribution to U.S. Environmental Protection Agency 303(d) list segments. Analysis of selenium loading included quantifying loads and determining the amount of load that would need to be reduced to bring the site into compliance, referred to as 'the load reduction,' with the State chronic aquatic-life standard for dissolved selenium [85th percentile selenium concentration not to exceed 4.6 ?g/L (micrograms per liter)], referred to as 'the water-quality standard.' Streamflow and selenium concentration data for 54 historical water-quality/water-quantity monitoring sites were compiled from U.S. Geological Survey and Colorado Department of Public Health and Environment data sources. Three methods were used for analysis of selenium concentration data to address the variable data density among sites. Mean annual selenium loads were determined for only 10 of the 54 sites due to data availability limitations. Twenty-two sites had 85th percentile selenium concentrations that exceeded the water-quality standard, 3 sites had 85th percentile selenium concentrations less than the State standard, and 29 sites could not be evaluated with respect to 85th percentile selenium concentration (sample count less than 5). To bring selenium concentrations into compliance with the water-quality standard, more than 80 percent of the mean annual selenium load would need to be reduced at Red Rock Canyon, Dry Cedar Creek, Cedar Creek, Loutzenhizer Arroyo, Sunflower Drain, and Whitewater Creek. More than 50 percent of the mean annual load would need to be reduced at Dry Creek to bring the site into compliance with the water-quality standard. The Uncompahgre River, Gunnison River at Delta, and Gunnison River near Grand Junction would require 69, 34 and 53 percent, respectively, of the mean annual load to be reduced for water years 2001 through 2005 to meet the water-quality standard. Mean annual load reductions can be further reduced by targeting the periods of time when selenium would be removed from streams by remediation. During a previous study of selenium loads in the Lower Gunnison River Basin, mean annual load reductions were estimated at the Gunnison River near Grand Junction for the 1997?2001 study period. Mean annual load reductions estimated for this study period were less than those estimated for the 2001?05 study period, emphasizing the importance of understanding that different study periods can result in different load reduction estimates.

Scientific Investigations Report↗

USGS2004

Polar organic chemical integrative sampling and liquid chromatography- electrospray/ion-trap mass spectrometry for assessing selected prescription and illicit drugs in treated sewage effluents

The purpose of the research presented in this paper was twofold: (1) to demonstrate the coupling of two state-of-the-art techniques: a time-weighted polar organic chemical integrative sampler (POCIS) and microliquid chromatography–electrospray/ion-trap mass spectrometry and (2) to assess the ability of these methodologies to detect six drugs (azithromycin, fluoxetine, omeprazole, levothyroxine, methamphetamine, methylenedioxymethamphetamine [MDMA]) in a real-world environment, e.g., waste water effluent. In the effluent from three wastewater treatment plants (WWTPs), azithromycin was detected at concentrations ranging from 15 to 66 ng/L, which is equivalent to a total annual release of 1 to 4 kg into receiving waters. Detected and confirmed in the effluent from two WWTPs were two illicit drugs, methamphetamine and MDMA, at 2 and 0.5 ng/L, respectively. Although the ecotoxicologic significance of drugs in environmental matrices, particularly water, has not been closely examined, it can only be surmised that these substances have the potential to adversely affect biota that are continuously exposed to them even at very low levels. The potential for chronic effects on human health is also unknown but of increasing concern because of the multiuse character of water, particularly in densely populated, arid areas.

Archives of Environmental Contamination and Toxico↗

USGS2018

Science support for evaluating natural recovery of polychlorinated biphenyl concentrations in fish from Crab Orchard Lake, Crab Orchard National Wildlife Refuge, Illinois

Introduction Crab Orchard Lake in southern Illinois is one of the largest and most popular recreational lakes in the state. Construction of the nearly 7,000-acre reservoir in the late 1930s created employment opportunities through the Works Progress Administration, and the lake itself was intended to supply water, control flooding, and provide recreational opportunities for local communities (Stall, 1954). In 1942, the Department of War appropriated or purchased more than 20,000 acres of land around Crab Orchard Lake and constructed the Illinois Ordnance Plant, which manufactured bombs and anti-tank mines during World War II. After the war, an Act of Congress transferred the property to the U.S. Department of the Interior. Crab Orchard National Wildlife Refuge was established on August 5, 1947, for the joint purposes of wildlife conservation, agriculture, recreation, and industry. Production of explosives continued, but new industries also moved onsite. More than 200 tenants have held leases with Crab Orchard National Wildlife Refuge and have operated a variety of manufacturing plants (electrical components, plated metal parts, ink, machined parts, painted products, and boats) on-site. Soils, water, and sediments in several areas of the refuge were contaminated with hazardous substances from handling and disposal methods that are no longer acceptable environmental practice (for example, direct discharge to surface water, use of unlined landfills). Polychlorinated biphenyl (PCB) contamination at the refuge was identified in the 1970s, and a PCB-based fish-consumption advisory has been in effect since 1988 for Crab Orchard Lake. The present advisory covers common carp ( Cyprinus carpio ) and channel catfish ( Ictalurus punctatus ); see Illinois Department of Public Health (2017). Some of the most contaminated areas of the refuge were actively remediated, and natural ecosystem recovery processes are expected to further reduce residual PCB concentrations in the lake. The U.S. Fish and Wildlife Service sought technical support to understand environmental drivers of current (2017) PCB residues in fish tissue and patterns in PCB residues through time to inform the fish-consumption advisory for Crab Orchard Lake. This project is planned in two phases (Tasks 1 and 2); the first phase is included in this report. Task 1, reported here, includes a review of existing literature and a brief overview focused on environmental and biochemical/physiological processes that drive PCB residues in fish tissue. This review specifically targets processes that are relevant for freshwater lacustrine environments such as those at Crab Orchard Lake. In addition to discussions of environmental fate, metabolism, and accumulation of PCBs, this review includes a brief scientifically based explanation of approaches used to establish fish-consumption advisories. A planned second task (Task 2) will include a compilation and summary of existing data on PCB residues in fish tissue samples from Crab Orchard Lake. This summary will also place Crab Orchard Lake data in a broader geographic context through a comparison with fish data from other Midwestern lakes. When Task 1 and Task 2 are complete, resource managers will have (a) a synthesis of existing literature that characterizes the processes influencing the fate of residual PCBs remaining in systems such as Crab Orchard Lake, (b) a summary of natural PCB attenuation processes for use in risk communication with the public, and (c) a summary of existing data on PCBs in fish tissues from Crab Orchard Lake, including exploratory plots of tissue residues through time. Overall, this project will provide data to help resource managers better understand the ecological and public health consequences of residual PCBs in Crab Orchard Lake.

Illinois↗

USGS2019

Spatial and temporal variability of harmful algal blooms in Milford Lake, Kansas, May through November 2016

The U.S. Geological Survey, in cooperation with the Kansas Department of Health and Environment (KDHE), completed a study to quantify the spatial and temporal variability of cyanobacterial blooms in Milford Lake, Kansas, over a range of environmental conditions at various time scales (hours to months). A better understanding of the spatial and temporal variability of cyanobacteria and microcystin will inform sampling and management strategies for Milford Lake and for other lakes with cyanobacterial harmful algal bloom (CyanoHAB) issues throughout the Nation. Spatial and temporal variability were assessed in the upstream one-third of Milford Lake (designated as “Zone C” by KDHE) during May through November 2016 using a combination of time-lapse photography, continuous water-quality monitors, discrete phytoplankton, chlorophyll, and microcystin samples, and spatially dense near-surface data. Combined, these data were used to characterize variability of cyanobacterial abundance, algal biomass, and microcystin concentrations in Zone C of Milford Lake before, during, and after cyanobacterial blooms in 2016. Temporal patterns were evaluated during May through November 2016 using time-lapse photography at six locations in Zone C and at a single point location (the Wakefield site) using a combination of discrete and continuously measured water-quality data (including the cyanobacterial pigment phycocyanin). Based on time-lapse photography, CyanoHABs developed in Zone C of Milford Lake in early July and persisted through the end of November. Bloom accumulations at individual sites were dependent on wind direction. After a change in wind direction, it would take about 1 day for accumulations to become visible at different locations. During periods with low wind, accumulations were widespread and visible at all sites. Cyanobacteria were absent from the algal community at the Wakefield site in late May and were a minor component of the community in June; however, by mid-July the cyanobacteria were dominant and remained dominant until early November. Chlorophyll and microcystin concentrations at the Wakefield site were estimated using sensor-measured phycocyanin based on regression models developed for Zone C. Regression-estimated concentrations likely are more indicative of seasonal patterns in algal biomass (as indicated by chlorophyll concentrations) and microcystin than discretely collected samples because regression-estimated data have a much higher temporal resolution. Based on regression estimates, algal biomass and microcystin concentrations at the Wakefield site steadily increased from May through August. After August, concentrations decreased but remained relatively high compared to May and June. Daily chlorophyll maxima were as much as 400 times higher than daily minima, and daily microcystin maxima were as many as several orders of magnitude higher than daily minima. The extreme variability in algal biomass and microcystin concentrations at the Wakefield site reflects the development and dissipation of blooms, as indicated by the time-lapse cameras. Based on regression-estimated microcystin concentrations, the KDHE watch and warning thresholds for microcystin were exceeded during mid-June through late November. Exceedance of KDHE advisory thresholds often changed from no advisory to watch or warning over the course of the day because of the variability in algal biomass and microcystin concentrations caused by bloom development and dissipation. Continuous water-quality monitors may be useful in informing public-health decisions in lakes with variable CyanoHAB conditions; however, site-specific models need to be developed, and best practices for using continuous water-quality monitors to inform CyanoHAB management strategies need to be established. Spatial data were collected on May 26, July 21, and September 15, 2016, using a combination of a boat-mounted array and discrete water-quality samples analyzed for phytoplankton community composition and chlorophyll and microcystin concentrations. Spatial patterns were described using regression-estimated chlorophyll and microcystin concentrations. During the May 26, 2016, spatial surveys, cyanobacterial abundances were relatively low throughout Zone C and did not exceed KDHE guidance values compared to spatial surveys on July 21 and September 15. Regression-estimated chlorophyll concentrations were indicative of higher algal biomass uplake in Zone C, and decreases in the downlake direction towards Zone B. Regression-estimated chlorophyll concentrations also were more variable uplake than downlake. Based on regression estimates, microcystin concentrations did not exceed KDHE guidance values anywhere in Zone C on May 26. Spatial patterns in microcystin throughout Zone C did not match patterns in regression-estimated chlorophyll concentrations, likely because the algal community was not dominated by cyanobacteria at most locations in May. During the July 21, 2016, spatial surveys, cyanobacterial abundances in Zone C exceeded KDHE guidance values in 50 percent of samples. The algal community in Zone C was dominated by cyanobacteria at all locations except two, where cyanobacteria codominated with diatoms. Both locations where cyanobacteria and diatoms codominated were north of the causeway. Regression-estimated chlorophyll concentrations were indicative of higher algal biomass north of the causeway and on the eastern shore of Zone C. On July 21, algal biomass did not always decrease in the downlake direction. There was a decrease just south of the causeway but an increase shortly after with higher concentrations into Zone B. Spatial maps indicated changes in algal distribution at a 0.5-meter depth, with algae moving to the central part of the lake north of the causeway and along the eastern shore south of the causeway. Most regression-estimated microcystin concentrations on July 21 exceeded KDHE guidance values, reflecting the pervasive bloom conditions in Zone C during this period. Spatial patterns in regression-estimated microcystin concentrations throughout Zone C were similar to patterns seen in discrete samples and regression-estimated chlorophyll concentrations, with higher concentrations north of the causeway and on the east shore of Zone C. During the September 15, 2016, spatial surveys, cyanobacterial abundances did not exceed KDHE guidance values. The algal community north of the causeway was dominated by diatoms. The algal community throughout the rest of Zone C was dominated by cyanobacteria. Of regression-estimated microcystin concentrations on September 15, 80 percent did not exceed KDHE guidance values. Spatial patterns indicated northward movement of the cyanobacterial bloom consistent with a wind shift noted the previous day. On September 14, winds were generally from the north to northwest, shifting to the south by September 15. There was a northward progression of chlorophyll and microcystin during the spatial surveys. These data, along with the camera data and spatial and wind data from May and July, indicate that wind can be a major driver of the spatial and temporal variability of cyanobacterial blooms in Milford Lake and likely plays a role in the extent and duration of near-shore accumulations.

Kansas↗

USGS2013

Sustainably connecting children with nature: an exploratory study of nature play area visitor impacts and their management

Parks are developing nature play areas to improve children's health and “connect” them with nature. However, these play areas are often located in protected natural areas where managers must balance recreation with associated environmental impacts. In this exploratory study, we sought to describe these impacts. We also investigated which ages, gender, and play group sizes most frequently caused impact and where impacts most frequently occur. We measured the lineal and aerial extent and severity of impacts at three play areas in the eastern United States. Methods included soil and vegetation loss calculations, qualitative searches and tree and shrub damage classifications. Additionally, we observed 12 h of play at five play areas. Results showed that measurable negative impacts were caused during 33% of the time children play. On average, 76% of groundcover vegetation was lost at recreation sites and 100% was lost at informal trails. In addition, approximately half of all trees and shrubs at sites were damaged. Meanwhile, soil exposure was 25% greater on sites and trails than at controls. Boys and small group sizes more frequently caused impact, and informal recreation sites were most commonly used for play. No statistically significant correlations were found between age or location and impact frequency. Managers interested in developing nature play areas should be aware of, but not deterred by these impacts. The societal benefits of unstructured play in nature may outweigh the environmental costs. Recommended management strategies include selecting impact-resistant sites, improving site resistance, promoting low impact practices, and managing adaptively.

Landscape and Urban Planning↗

USGS2011

Groundwater quality in the Chemung River Basin, New York, 2008

The second groundwater quality study of the Chemung River Basin in south-central New York was conducted as part of the U.S. Geological Survey 305(b) water-quality-monitoring program. Water samples were collected from five production wells and five private residential wells from October through December 2008. The samples were analyzed to characterize the chemical quality of the groundwater. Five of the wells are screened in sand and gravel aquifers, and five are finished in bedrock aquifers. Two of these wells were also sampled for the first Chemung River Basin study of 2003. Samples were analyzed for 6 physical properties and 217 constituents, including nutrients, major inorganic ions, trace elements, radionuclides, pesticides, volatile organic compounds, phenolic compounds, organic carbon, and four types of bacterial analyses. Results of the water-quality analyses for individual wells are presented in tables, and summary statistics for specific constituents are presented by aquifer type. The results are compared with Federal and New York State drinking-water standards, which typically are identical. Water quality in the study area is generally good, but concentrations of some constituents equaled or exceeded current or proposed Federal or New York State drinking-water standards; these were: sodium (one sample), total dissolved solids (one sample), aluminum (one sample), iron (one sample), manganese (four samples), radon-222 (eight samples), trichloroethene (one sample), and bacteria (four samples). The pH of all samples was typically neutral or slightly basic (median 7.5); the median water temperature was 11.0 degrees Celsius (?C). The ions with the highest median concentrations were bicarbonate (median 202 milligrams per liter [mg/L]) and calcium (median 59.0 mg/L). Groundwater in the study area is moderately hard to very hard, but more samples were hard or very hard (121 mg/L as calcium carbonate (CaCO3) or greater) than were moderately hard (61-120 mg/L as CaCO3); the median hardness was 205 mg/L as CaCO3. The maximum concentration of nitrate plus nitrite was 3.67 mg/L as nitrogen, which did not exceed established drinking-water standards for nitrate plus nitrite (10 mg/L as nitrogen). The trace elements with the highest median concentrations were strontium (median 196.5 micrograms per liter [(u or mu)g/L]), barium (median 186 (u or mu)g/L), and iron (median 72.5 (u or mu)g/L in unfiltered water). Five pesticides and pesticide degradates were detected among four samples at concentrations of 0.11 (u or mu)g/L or less; they included herbicides and herbicide degradates. Six volatile organic compounds (VOCs) were detected among four samples; these included four solvents, methyl tert-butyl ether, and one trihalomethane. Trichloroethene, a solvent, was detected in one production well at 5.5 (u or mu)g/L; the Federal and New York State Maximum Contaminant Level (MCL) (5 (u or mu)g/L) was exceeded. The highest radon-222 activities were in samples from bedrock wells [maximum 1,740 picocuries per liter (pCi/L)]; eight of the wells sampled exceeded a proposed U.S. Environmental Protection Agency (USEPA) drinking-water standard of 300 pCi/L. Any detection of coliform bacteria indicates a potential violation of New York State health regulations; total coliform bacteria were detected in four samples, and fecal coliform bacteria were detected in one sample.μμμ

Open-File Report↗

USGS2018

Maps showing predicted probabilities for selected dissolved oxygen and dissolved manganese threshold events in depth zones used by the domestic and public drinking water supply wells, Central Valley, California

The purpose of the prediction grids for selected redox constituents—dissolved oxygen and dissolved manganese—are intended to provide an understanding of groundwater-quality conditions at the domestic and public-supply drinking water depths. The chemical quality of groundwater and the fate of many contaminants is influenced by redox processes in all aquifers, and understanding the redox conditions horizontally and vertically is critical in evaluating groundwater quality. The redox condition of groundwater—whether oxic (oxygen present) or anoxic (oxygen absent)—strongly influences the oxidation state of a chemical in groundwater. The anoxic dissolved oxygen thresholds of <0.5 milligram per liter (mg/L), <1.0 mg/L, and <2.0 mg/L were selected to apply broadly to regional groundwater-quality investigations. Although the presence of dissolved manganese in groundwater indicates strongly reducing (anoxic) groundwater conditions, it is also considered a “nuisance” constituent in drinking water, making drinking water undesirable with respect to taste, staining, or scaling. Three dissolved manganese thresholds, <50 micrograms per liter (µg/L), <150 µg/L, and <300 µg/L, were selected to create predicted probabilities of exceedances in depth zones used by domestic and public-supply water wells. The 50 µg/L event threshold represents the secondary maximum contaminant level (SMCL) benchmark for manganese (U.S. Environmental Protection Agency, 2017; California Division of Drinking Water, 2014), whereas the 300 µg/L event threshold represents the U.S. Geological Survey (USGS) health-based screening level (HBSL) benchmark, used to put measured concentrations of drinking-water contaminants into a human-health context (Toccalino and others, 2014). The 150 µg/L event threshold represents one-half the USGS HBSL. The resultant dissolved oxygen and dissolved manganese prediction grids may be of interest to water-resource managers, water-quality researchers, and groundwater modelers concerned with the occurrence of natural and anthropogenic contaminants related to anoxic conditions. Prediction grids for selected redox constituents and thresholds were created by the USGS National Water-Quality Assessment (NAWQA) modeling and mapping team.

California↗

USGS2000

Regression analysis and real-time water-quality monitoring to estimate constituent concentrations, loads, and yields in the Little Arkansas River, south-central Kansas, 1995-99

Water from the Little Arkansas River is used as source water for artificial recharge to the Equus Beds aquifer, which provides water for the city of Wichita in south-central Kansas. To assess the quality of the source water, continuous in-stream water-quality monitors were installed at two U.S. Geological Survey stream-gaging stations to provide real-time measurement of specific conductance, pH, water temperature, dissolved oxygen, and turbidity in the Little Arkansas River. In addition, periodic water samples were collected manually and analyzed for selected constituents, including alkalinity, dissolved solids, total suspended solids, chloride, sulfate, atrazine, and fecal coliform bacteria. However, these periodic samples do not provide real-time data on which to base aquifer-recharge operational decisions to prevent degradation of the Equus Beds aquifer. Continuous and periodic monitoring enabled identification of seasonal trends in selected physical properties and chemical constituents and estimation of chemical mass transported in the Little Arkansas River. Identification of seasonal trends was especially important because high streamflows have a substantial effect on chemical loads and because concentration data from manually collected samples often were not available. Therefore, real-time water-quality monitoring of surrogates for the estimation of selected chemical constituents in streamflow can increase the accuracy of load and yield estimates and can decrease some manual data-collection activities. Regression equations, which were based on physical properties and analysis of water samples collected from 1995 through 1998 throughout 95 percent of the stream's flow duration, were developed to estimate alkalinity, dissolved solids, total suspended solids, chloride, sulfate, atrazine, and fecal coliform bacteria concentrations. Error was evaluated for the first year of data collection and each subsequent year, and a decrease in error was observed as the number of samples increased. Generally, 2 years of data (35 to 55 samples) collected throughout 90 to 95 percent of the stream's flow duration were sufficient to define the relation between a constituent and its surrogate(s). Relations and resulting equations were site specific. To test the regression equations developed from the first 3 years of data collection (1995-98), the equations were applied to the fourth year of data collection (1999) to calculate estimated constituent loads and the errors associated with these loads. Median relative percentage differences between measured constituent loads determined using the analysis of periodic, manual water samples and estimated constituent loads were less than 25 percent for alkalinity, dissolved solids, chloride, and sulfate. The percentage differences for total suspended solids, atrazine, and bacteria loads were more than 25 percent. Even for those constituents with large relative percentage differences between the measured and estimated loads, the estimation of constituent concentrations with regression analysis and real-time water-quality monitoring has numerous advantages over periodic manual sampling. The timely availability of bacteria and other constituent data may be important when considering recreation and the whole-body contact criteria established by the Kansas Department of Health and Environment for a specific water body. In addition, water suppliers would have timely information to use in adjusting water-treatment strategies; environmental changes could be assessed in time to prevent negative effects on fish or other aquatic life; and officials for the Equus Beds Ground-Water Recharge Demonstration project could use this information to prevent the possible degradation of the Equus Beds aquifer by choosing not to recharge when constituent concentrations in the source water are large. Constituent loads calculated from the regression equations may be useful for calculating total maximum daily loads (TMDL's), wh

Water-Resources Investigations Report↗

USGS1996

Influences of environmental settings on aquatic ecosystems in the Apalachicola-Chattahoochee-Flint River basin

The watershed boundary of the Apalachicola-Chattahoochee-Flint (ACF) River basin defines an aquatic ecosystem whose water quality is the result of complex interactions of natural and human influences on land and water resources. Topics relating to the basin's environmental setting-its physical, biological, and cultural characteristics-are summarized to provide an understanding of factors that influence water quality and the health of aquatic ecosystems. The ACF River basin lies partly in southwestern Georgia, southeastern Alabama, and northwestern Florida and covers 19,800 square miles in the Blue Ridge, the Piedmont, and the Coastal Plain Provinces. The basin includes the drainages of the Chattahoochee River and the Flint River, which meet to form the Apalachicola River. The Apalachicola River flows into the Gulf of Mexico at Apalachicola Bay. Basin hydrology and water quality are influenced by 16 mainstem reservoirs, 13 of which are on the Chattahoochee River. Ground water in the basin is contained in six aquifers-the surficial aquifer system, the Floridan aquifer system, the Claiborne aquifer, the Clayton aquifer, the Providence aquifer, and the crystalline-rock aquifer. Physiography, climate, and hydrology of the ACF River basin provide natural conditions that support a rich and abundant diversity of plants and animals. Although most of the ACF River basin has been altered by human activities, the basin's environment is noteworthy for its remaining biological diversity and the role it plays in sustaining biological productivity in Apalachicola Bay. The Bay produces 90 percent of Florida's and 13 percent of the Nation's oyster harvest; and functions as a nursery for penaeid shrimp, blue crabs, and a variety of fin fish. The diversity of the basin's aquatic fauna is noteworthy because the basin is home to (1) the largest number of fish species among Gulf Coast drainages east of the Mississippi River, (2) the largest assemblage of freshwater fish in Florida, (3) the largest number of mollusc species among western Florida drainages, and (4) the highest species density of amphibians and reptiles on the continent north of Mexico. Population of the ACF River basin in 1990 was estimated at 2.6 million. Nearly 90 percent of the total population lived in Georgia, and nearly 60 percent lived in the Metropolitan Atlanta area. The 1990 basin population is projected to increase by 15 percent to 3.0 million by the year 2000, and by 30 percent to 3.4 million by 2010. The largest increases in populations are projected for the Metropolitan Atlanta area. In 1972-76, approximately 59 percent of the basin was covered by forest, 29 percent was agricultural, 5 percent was wetland, 4 percent was urban, and 3 percent was water or barren land. Most of the original land cover of the basin has been transformed by human activity. Timber is the basin's largest cash crop and most forests consist of second-growth stands or large acreages of planted pine. The dominant agricultural land use in the Piedmont Province is pasture and confined feeding for dairy, livestock, and poultry production. Row-crop agriculture, orchards, and silviculture are most common in the Coastal Plain Province. The top five crops in order from most to least acres harvested in 1990 were peanuts, corn, soybeans, wheat, and cotton. The water in the basin is used for public and industrial supply, irrigation, power generation, navigation, and recreation. Although most public-supply withdrawals in the Blue Ridge and Piedmont Provinces are from surface-water sources, with the exception of counties near or immediately below the Fall Line, all publicly supplied water in the Coastal Plain is withdrawn from ground-water sources. Ground water supplied 18 percent of the basin's population served by public supply. Total water withdrawn in the ACF River basin in 1990 was 2,098 million gallons per day (Mgal/d), of which Georgia withdrew 82 percent and Florida and Alabama each withdrew 9 percent. Power generation is the single largest water use. Sixteen of the basin's 22 power generating plants are located along the mainstem of the Chattahoochee River. The U.S. Army Corps of Engineers maintains a navigation channel from the mouth of the Apalachicola River to Columbus, Ga., on the Chattahoochee River and to Bainbridge, Ga., on the Flint River. Water quality in the basin is influenced by the operation of 137 municipal wastewater-treatment facilities. In 1990, 354 Mgal/d of municipal wastewater was discharged within the ACF River basin. Eighty-eight percent of the wastewater was discharged into the Chattahoochee River basin, 10.6 percent into the Flint River basin, and 1.4 percent into the Apalachicola River basin. Two-thirds of the 938 stream miles in the Georgia portion of the ACF River basin having water quality that does not meet or only partially meets the designated-use criteria in the Chattahoochee River basin. The Chattahoochee River is the most heavily-used water resource both in the ACF River basin and in Georgia. Urban runoff or unknown nonpoint sources are cited as the causes of water-quality regulations in 72 percent of violations. The remaining causes primarily are combined sewer overflows in the Atlanta area, and discharges from municipal or industrial treatment facilities with inadequate treatment capabilities or operational deficiencies.

Alabama, Florida, Georgia↗

USGS2020

Microbial source tracking (MST) in Chattahoochee River National Recreation Area: Seasonal and precipitation trends in MST marker concentrations, and associations with E. coli levels, pathogenic marker presence, and land use

Escherichia coli levels in recreational waters are often used to predict when fecal-associated pathogen levels are a human health risk. The reach of the Chattahoochee River that flows through the Chattahoochee River National Recreation Area (CRNRA), located in the Atlanta-metropolitan area, is a popular recreation area that frequently exceeds the U.S. Environmental Protection Agency beach action value (BAV) for E. coli . A BacteriALERT program has been implemented to provide real-time E. coli estimates in the reach and notify the public of potentially harmful levels of fecal-associated pathogens as indicated by surrogate models based on real-time turbidity measurements from continuous water quality monitoring stations. However, E. coli does not provide information about the sources of fecal contamination and its accuracy as a human health indicator is questionable when sources of contamination are non-human. The objectives of our study were to investigate, within the Park and surrounding watersheds, seasonal and precipitation-related patterns in microbial source tracking marker concentrations of possible sources (human, dog, and ruminant), assess correlations between source contamination levels and culturable E. coli levels, determine which sources best explained model-based E. coli estimates above the BAV and detection of esp2 (a marker for the esp gene associated with pathogenic strains of Enterococcus faecium and Enterococcus faecalis) , and investigate associations between source contamination levels and land use features. Three BacteriALERT sites on the Chattahoochee River were sampled six times per season in the winter and summer from December 2015 through September 2017, and 11 additional stream sites (synoptic sites) from the CRNRA watershed were sampled once per season. Samples were screened with microbial source tracking (MST) quantitative PCR (qPCR) markers for humans (HF183 Taqman), dogs (DogBact), and ruminants (Rum2Bac), the esp2 qPCR marker, and culturable E. coli. At the BacteriALERT sites, HF183 Taqman concentrations were higher under wet conditions DogBact concentrations were greater in the winter and under wet conditions, and Rum2Bac concentrations were comparatively low throughout the study with no difference across seasons or precipitation conditions. Concentrations of HF183 Taqman, DogBact, and Rum2Bac were positively correlated with culturable E. coli concentrations; however, DogBact had the largest R 2 value among the three markers, and the forward stepwise regression indicated it was the best predictor of culturable E. coli concentrations at the BacteriALERT sites. Recursive partitioning indicated that BAV exceedances of model-based E. coli estimates were best explained by DogBact concentrations ≥3 gene copies per mL (CN/mL). Detections of esp2 at BacteriALERT sites were best explained by DogBact concentrations ≥11 CN/mL, while detections of esp2 at synoptic sites were best explained by HF183 Taqman ≥29 CN/mL. At the synoptic sites, HF183 Taqman levels were associated with wastewater treatment plant density. However, this relationship was driven primarily by a single site, suggesting possible conveyance issues in that catchment. esp2 detections at synoptic sites were positively associated with development within a 2-km radius and negatively associated with development within the catchment, suggesting multiple sources of esp2 in the watershed. DogBact and Rum2Bac were not associated with the land use features included in our analyses. Implications for Park management include: 1) fecal contamination levels were highest during wet conditions and in the off season when fewer visitors are expected to be participating in water-based recreation, 2) dogs are likely contributors to fecal contamination in the CRNRA and may be sources of pathogenic bacteria indicating further investigation of the origins of this contamination may be warranted as would be research to understand the human health risks from exposure to dog fecal contamination, and 3) high levels of the human marker at one site in the CRNRA watershed suggests more extensive monitoring in that catchment may locate the origin of human fecal contamination detected during this study.

Georgia↗

USGS2019

Factors influencing anuran wetland occupancy in an agricultural landscape

Habitat disturbance is an important cause of global amphibian declines, with especially strong effects in areas of high agricultural use. Determining the influence of site characteristics on amphibian presence and success is vital to developing effective conservation strategies. We used occupancy analysis to estimate presence of four anuran species at wetlands in northern Iowa as a function of eight environmental covariates hypothesized to affect occupancy: fish and salamander abundance, invertebrate density, aquatic vegetative cover, wetland area, atrazine concentration in water, surrounding agricultural land use, and an overall wetland health score (wetland condition index [WCI]). We surveyed 27 wetlands multiple times in 2015 and 2016. Leopard Frogs ( Lithobates pipiens ) and American Toads ( Anaxyrus americanus ) were observed at 100% of the sites, Boreal Chorus Frogs ( Pseudacris maculata ) at 96%, and Gray Treefrogs ( Hyla spp.) at 81%. Wetland site occupancy for all species in our study ranged from 0.23 ( Hyla spp. tadpoles) to 0.95 ( L. pipiens adults), indicating that agricultural wetlands can provide refuge or habitat for amphibians. Fish abundance, percentage of cropland cover within 500 m of the wetland, and salamander abundance were among the variables best supported by our models although their estimated effects were weak. Wetland area, atrazine concentration, vegetative cover, and WCI also influenced occupancy probability, but for only a small number of species and life stages. The direction of predicted effects varied by species and life stage. Despite only weak evidence that the environmental factors we measured influenced anuran occupancy, our results provide insights for managers seeking to understand how amphibians use landscapes modified by agriculture.

Iowa↗

USGS2017

Functional integrity of freshwater forested wetlands, hydrologic alteration, and climate change

Climate change will challenge managers to balance the freshwater needs of humans and wetlands. The Intergovernmental Panel on Climate Change predicts that most regions of the world will be exposed to higher temperatures, CO 2 , and more erratic precipitation, with some regions likely to have alternating episodes of intense flooding and mega-drought. Coastal areas will be exposed to more frequent saltwater inundation as sea levels rise. Local land managers desperately need intra-regional climate information for site-specific planning, management, and restoration activities. Managers will be challenged to deliver freshwater to floodplains during climate change-induced drought, particularly within hydrologically altered and developed landscapes. Assessment of forest health, both by field and remote sensing techniques, will be essential to signal the need for hydrologic remediation. Studies of the utility of the release of freshwater to remediate stressed forested floodplains along the Murray and Mississippi Rivers suggest that brief episodes of freshwater remediation for trees can have positive health benefits for these forests. The challenges of climate change in forests of the developing world will be considered using the Tonle Sap of Cambodia as an example. With little ecological knowledge of the impacts, managing climate change will add to environmental problems already faced in the developing world with new river engineering projects. These emerging approaches to remediate stressed trees will be of utmost importance for managing worldwide floodplain forests with predicted climate changes.

Ecosystem Health and Sustainability↗

USGS2007

Aquatic bird disease and mortality as an indicator of changing ecosystem health

We analyzed data from pathologic investigations in the United States, collected by the USGS National Wildlife Health Center between 1971 and 2005, into aquatic bird mortality events. A total of 3619 mortality events was documented for aquatic birds, involving at least 633 708 dead birds from 158 species belonging to 23 families. Environmental causes accounted for the largest proportion of mortality events (1737 or 48%) and dead birds (437 258 or 69%); these numbers increased between 1971 and 2000, with biotoxin mortalities due to botulinum intoxication (Types C and E) being the leading cause of death. Infectious diseases were the second leading cause of mortality events (20%) and dead birds (20%), with both viral diseases, including duck plague ( Herpes virus ), paramyxovirus of cormorants ( Paramyxovirus PMV1) and West Nile virus ( Flavivirus ), and bacterial diseases, including avian cholera ( Pasteurella multocida ), chlamydiosis ( Chalmydia psittici ), and salmonellosis ( Salmonella sp.), contributing. Pelagic, coastal marine birds and species that use marine and freshwater habitats were impacted most frequently by environmental causes of death, with biotoxin exposure, primarily botulinum toxin, resulting in mortalities of both coastal and freshwater species. Pelagic birds were impacted most severely by emaciation and starvation, which may reflect increased anthropogenic pressure on the marine habitat from over-fishing, pollution, and other factors. Our study provides important information on broad trends in aquatic bird mortality and highlights how long-term wildlife disease studies can be used to identify anthropogenic threats to wildlife conservation and ecosystem health. In particular, mortality data for the past 30 yr suggest that biotoxins, viral, and bacterial diseases could have impacted >5 million aquatic birds.

Marine Ecology Progress Series↗

USGS2019

Early life exposure to triphenyl phosphate: Effects on thyroid function, growth, and resting metabolic rate of Japanese quail (Coturnix japonica) chicks

Triphenyl phosphate (TPHP; CAS # 115-86-6), a commonly used plasticizer and flame retardant, has been reported in wild birds and identified as a potential high-risk chemical. We exposed Japanese quail ( Coturnix japonica ) by in ovo injection, and once hatched, orally each day for 5 days to safflower oil (controls) or TPHP dissolved in vehicle at low (5 ng TPHP/g), mid (50 ng TPHP/g), or high (100 ng TPHP/g) nominal TPHP doses. The low TPHP dose reflected concentrations in wild bird eggs, with mid and high doses 10x and 20x greater to reflect potential increases in environmental TPHP concentrations in the future. Despite no effects on mRNA expression in thyroid-related genes, TPHP exposure enhanced thyroid gland structure in high TPHP males, but in females, suppressed thyroid gland structure and activity (all TPHP females), and circulating free triiodothyronine (high TPHP females only). Consistent with thyroidal changes, and compared to controls, mid and high TPHP chicks experienced significantly reduced resting metabolic rate (≤13%) and growth (≤53%); mid TPHP males and high TPHP females were significantly smaller. The observed thyroidal effects and suppressed growth and metabolic rate of the quail chicks suggest that TPHP may adversely affect the health of wild birds.

Environmental Pollution↗

USGS2024

Warm places, warm years, and warm seasons increase parasitizing of moose by winter ticks

Observed links between parasites, such as ticks, and climate change have aroused concern for human health, wildlife population dynamics, and broader ecosystem effects. The one-host life history of the winter tick ( Dermacentor albipictus ) links each annual cohort to environmental conditions during three specific time periods when they are predictably vulnerable: spring detachment from hosts, summer larval stage, and fall questing for hosts. We used mixed-effects generalized linear models to investigate the drivers of tick loads carried by moose ( Alces alces ) relative to these time periods and across 750 moose, 10 years, and 16 study areas in the western United States. We tested for the effects of biotic factors (moose density, shared winter range, vegetation, migratory behavior) and weather conditions (temperature, snow, humidity) during each seasonal period when ticks are vulnerable and off-host. We found that warm climatic regions, warm seasonal periods across multiple partitions of the annual tick life cycle, and warm years relative to long-term averages each contributed to increased tick loads. We also found important effects of snow and other biotic factors such as host density and vegetation. Tick loads in the western United States were, on average, lower than those where tick-related die-offs in moose populations have occurred recently, but loads carried by some individuals may be sufficient to cause mortality. Lastly, we found interannual variation in tick loads to be most correlated with spring snowpack, suggesting this environmental component may have the highest potential to induce change in tick load dynamics in the immediate future of this region.

Ecosphere↗

USGS2018

Resilience concepts in psychiatry demonstrated with bipolar disorder

Background The term resilience describes stress–response patterns of subjects across scientific disciplines. In ecology, advances have been made to clearly distinguish resilience definitions based on underlying mechanistic assumptions. Engineering resilience (rebound) is used for describing the ability of subjects to recover from adverse conditions (disturbances), and is the rate of recovery. In contrast, the ecological resilience definition considers a systemic change: when complex systems (including humans) respond to disturbances by reorganizing into a new regime (stable state) where structural and functional aspects have fundamentally changed relative to the prior regime. In this context, resilience is an emergent property of complex systems. We argue that both resilience definitions and uses are appropriate in psychology and psychiatry, but although the differences are subtle, the implications and uses are profoundly different. Methods We borrow from the field of ecology to discuss resilience concepts in the mental health sciences. Results In psychology and psychiatry, the prevailing view of resilience is adaptation to, coping with, and recovery (engineering resilience) from adverse social and environmental conditions. Ecological resilience may be useful for describing vulnerability, onset, and the irreversibility patterns of mental disorders. We discuss this in the context of bipolar disorder. Conclusion Rebound, adaptation, and coping are processes that are subsumed within the broader systemic organization of humans, from which ecological resilience emanates. Discerning resilience concepts in psychology and psychiatry has potential for a mechanistically appropriate contextualization of mental disorders at large. This might contribute to a refinement of theory and contextualize clinical practice within the broader systemic functioning of mental illnesses.

International Journal of Bipolar Disorders↗

USGS2022

Decision-making for managing harmful algal blooms

Cyanobacteria are a global water-quality concern because these organisms can develop into harmful blooms that affect ecologic, economic, and public health. U.S. Geological Survey scientists worked with the New York State Office of Parks, Recreation and Historic Preservation and the New York State Department of Environmental Conservation to develop a structured decision-making template for managing cyanobacterial harmful algal blooms. This approach can help natural resource managers make decisions to manage water bodies threatened by harmful algal blooms.

New York↗