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At least 937 records · Page 52Linked to original sources

USGS2007

Cross-shelf transport of pink shrimp larvae: Interactions of tidal currents, larval vertical migrations and internal tides

Transport and behavior of pink shrimp Farfantepenaeu s duorarum larvae were investigated on the southwestern Florida (SWF) shelf of the Gulf of Mexico between the Dry Tortugas spawning grounds and Florida Bay nursery grounds. Stratified plankton samples and hydrographic data were collected at 2 h intervals at 3 stations located on a cross-shelf transect. At the Marquesas station, midway between Dry Tortugas and Florida Bay, internal tides were recognized by anomalously cool water, a shallow thermocline with strong density gradients, strong current shear, and a high concentration of pink shrimp larvae at the shallow thermocline. Low Richardson numbers occurred at the pycnocline depth, indicating vertical shear instability and possible turbulent transport from the lower to the upper layer where myses and postlarvae were concentrated. Analysis of vertically stratified plankton suggested that larvae perform vertical migrations and the specific behavior changes ontogenetically; protozoeae were found deeper than myses, and myses deeper than postlarvae. Relative concentrations of protozoea in the upper, middle and bottom layers were consistent with a diel vertical migration, whereas that of postlarvae and myses were consistent with the semidiurnal tides in phase with the flood tide. Postlarvae, the shallowest dwellers that migrate with a semidiurnal periodicity, experienced the largest net onshore flux and larval concentrations were highly correlated with the cross-shelf current. These results provide the first evidence of an onshore tidal transport (a type of selective tidal stream transport, STST), in decapod larvae migrating in continental shelf waters offshore, ca. 100 km from the coast and at a depth of 20 m, while approaching the coastal nursery grounds. Longer time series would be necessary to establish whether internal tides play any role in the larval onshore transport of this species and determine if the STST is the dominant onshore transport mechanism.

Florida↗

USGS2022

Pathways of productivity and influences on top consumers in forested streams

Forested stream ecosystems involve complex physical and biotic pathways that can influence fish in numerous ways. Consequently, the responses of fish communities to disturbance can be difficult to understand. In this study, we employed a food web model that links biotic (e.g., physiology, predator–prey interactions) and abiotic (e.g., temperature, sunlight) attributes to address fish responses to changes in stream-riparian ecosystems. We modeled responses to food web dynamics in four streams, using scenarios that included responses to riparian disturbance, climate change, and shifts in top consumers. The two consumers we focused on were coastal cutthroat trout ( Oncorhynchus clarkii clarkii ) and sculpin ( Cottus spp., collectively treated as a functional group) . We found the responses to environmental changes varied by fish species and among streams, and that responses were not independent due to exploitative interspecific competition. Simulations based on long-term data indicated that coastal cutthroat trout were responsive to changes in allochthonous resources including terrestrial detritus and invertebrates, whereas sculpin were more responsive to changes to autochthonous resources that included, periphyton and aquatic invertebrates. These results may be, in part, a consequence of species-specific foraging behavior. Trout have a higher propensity to drift feed and therefore receive a substantial subsidy from terrestrial invertebrates, whereas sculpin feed mostly on aquatic insects on the streambed. Simulations of changes in summer temperature and stream discharge suggest decreased biomass of both fish species because of physiological constraints on invertebrate prey which reduce fish foraging opportunities. Exploitative competition also may be important in fish responses: when one fish taxon was removed, the other showed increased biomass. Although the pattern of simulation results was consistent across the four streams, the magnitude of change varied among streams. Streams with food webs fueled by multiple energy sources may be more resilient to changes to riparian forests and climate. Through application of a systems model, we gained insights into pathways of productivity for fish in forested stream ecosystems that provide understanding of processes that influence fish and streams, as well as implications for management of both.

Forest Ecology and Management↗

USGS2026

Mesophotic octocoral larval settlement preferences and behaviors

Introduction Lab-based coral reproduction is advancing restoration efforts to support coral populations injured by the 2010 Deepwater Horizon oil spill. Objectives This study aimed to answer foundational questions concerning coral spawning and larval settlement that need to be resolved for these mesophotic and deep-sea coral species before restoration efforts can be scaled up. Methods From 2021 to 2023, fragments of the mesophotic octocorals Swiftia exserta and Thesea nivea were collected from the continental shelf offshore from Texas to Florida and transported to a federal facility in Florida. Multiyear spawning allowed for in-depth analysis of spawning periodicity, egg development, larval behavior, settlement rate, and substrate preference. In addition, we determined the likelihood of successful development and survival during early stages of development. Results Fertilization rates remained high throughout spawning periods of both species, with S. exserta spawning during a 1-month period and T. nivea continuing to spawn year-round. Larvae from both corals significantly preferred tiles seeded with crustose coralline algae, and there were species-specific preferences in substrate material. Additionally, larval survival or mortality was typically evident within a few days when in the presence of settlement substrates. In the absence of substrates, we observed larvae surviving for up to 2 months without settling. Conclusions This work answers critical questions to inform the long-term logistical planning for eventual out-planting of these species. Further, it highlights avenues that could accelerate future restoration-based reproduction efforts into unexplored mesophotic and deep species.

Alabama, Louisiana, Mississippi, Texas↗

USGS2013

Simulating mechanisms for dispersal, production and stranding of small forage fish in temporary wetland habitats

Movement strategies of small forage fish (<8 cm total length) between temporary and permanent wetland habitats affect their overall population growth and biomass concentrations, i.e., availability to predators. These fish are often the key energy link between primary producers and top predators, such as wading birds, which require high concentrations of stranded fish in accessible depths. Expansion and contraction of seasonal wetlands induce a sequential alternation between rapid biomass growth and concentration, creating the conditions for local stranding of small fish as they move in response to varying water levels. To better understand how landscape topography, hydrology, and fish behavior interact to create high densities of stranded fish, we first simulated population dynamics of small fish, within a dynamic food web, with different traits for movement strategy and growth rate, across an artificial, spatially explicit, heterogeneous, two-dimensional marsh slough landscape, using hydrologic variability as the driver for movement. Model output showed that fish with the highest tendency to invade newly flooded marsh areas built up the largest populations over long time periods with stable hydrologic patterns. A higher probability to become stranded had negative effects on long-term population size, and offset the contribution of that species to stranded biomass. The model was next applied to the topography of a 10 km × 10 km area of Everglades landscape. The details of the topography were highly important in channeling fish movements and creating spatiotemporal patterns of fish movement and stranding. This output provides data that can be compared in the future with observed locations of fish biomass concentrations, or such surrogates as phosphorus ‘hotspots’ in the marsh.

Ecological Modelling↗

USGS2016

Scale-dependent habitat selection and size-based dominance in adult male American alligators

Habitat selection is an active behavioral process that may vary across spatial and temporal scales. Animals choose an area of primary utilization (i.e., home range) then make decisions focused on resource needs within patches. Dominance may affect the spatial distribution of conspecifics and concomitant habitat selection. Size-dependent social dominance hierarchies have been documented in captive alligators, but evidence is lacking from wild populations. We studied habitat selection for adult male American alligators ( Alligator mississippiensis ; n = 17) on the Pearl River in central Mississippi, USA, to test whether habitat selection was scale-dependent and individual resource selectivity was a function of conspecific body size. We used K-select analysis to quantify selection at the home range scale and patches within the home range to determine selection congruency and important habitat variables. In addition, we used linear models to determine if body size was related to selection patterns and strengths. Our results indicated habitat selection of adult male alligators was a scale-dependent process. Alligators demonstrated greater overall selection for habitat variables at the patch level and less at the home range level, suggesting resources may not be limited when selecting a home range for animals in our study area. Further, diurnal habitat selection patterns may depend on thermoregulatory needs. There was no relationship between resource selection or home range size and body size, suggesting size-dependent dominance hierarchies may not have influenced alligator resource selection or space use in our sample. Though apparent habitat suitability and low alligator density did not manifest in an observed dominance hierarchy, we hypothesize that a change in either could increase intraspecific interactions, facilitating a dominance hierarchy. Due to the broad and diverse ecological roles of alligators, understanding the factors that influence their social dominance and space use can provide great insight into their functional role in the ecosystem.

Mississippi↗

USGS1985

Effects of flood control alternatives on fish and wildlife resources of the Malheur-Harney lakes basin

Malheur Lake is the largest freshwater marsh in the western contiguous United States and is one of the main management units of the Malheur National Wildlife Refuge in southeastern Oregon. The marsh provides excellent waterfowl production habitat as well as vital migration habitats for birds in the Pacific flyway. Water shortages have typically been a problem in this semiarid area; however, record snowfalls and cool summers have recently caused Malheur Lake to rise to its highest level in recorded history. This has resulted in the loss of approximately 57,000 acres of important wildlife habitat as well as extensive flooding of local ranches, roads, and railroad lines. Because of the importance of the Refuge, any water management plan for the Malheur-Harney Lakes Basin needs to consider the impact of management alternatives on the hydrology of Malheur Lake. The facilitated modeling workshop described in this report was conducted January 14-18, 1985, under the joint sponsorship of the Portland Ecological Services Field Office and the Malheur National Wildlife Refuge, Region 1, U.S. Fish and Wildlife Service (FWS). The Portland Field Office is responsible for FWS reporting requirements on Federal water resource projects while the Refuge staff has management responsibility for much of the land affected by high water levels in the Malheur-Harney Lakes Basin. The primary objective of the workshop was to begin gathering and analyzing information concerning potential fish and wildlife impacts, needs, and opportunities associated with proposed U.S. Army Corps of Engineers (COE) flood control alternatives for Malheur Lake. The workshop was structured around the formulation of a computer model that would simulate the hydrologic effects of the various alternatives and any concommitant changes in vegetation communities and wildlife use patterns. The simulation model is composed of three connected submodels. The Hydrology submodel calculates changes in lake volume, elevation, and surface area, as well as changes in water quality, that result from the proposed water management projects (upstream storage, upstream diversions, drainage canals) and the no action alternative. The Vegetation submodel determines associated changes in the areal extent of wetland and upland vegetation communities. Finally, the Wildlife submodel calculates indices of abundance or habitat suitability for colonial nesting birds (great egret, double-crested cormorant, white-faced ibis), greater sandhill crane, diving ducks, tundra swan, dabbling ducks, and Canada goose based on hydrologic and vegetation conditions. The model represents the Malheur-Harney Lakes Basin, but provides water quantity and quality indicators associated with additional flows that might occur in the Malheur River Basin. Several management scenarios, representing various flood control alternatives and assumptions concerning future runoff, were run to analyze model behavior. Scenario results are not intended as an analysis of all potential management actions or assumptions concerning future runoff. Rather, they demonstrate the type of analysis that could be conducted if the model was sufficiently refined and tested. Early in a model development project, the process of building the model is usually of greater benefit than the model itself. The model building process stimulates interaction among agencies, assists in integrating existing information, and helps identify research needs. These benefits usually accrue even in the absence of real predictive power in the resulting model. This workshop initiated interaction among the primary State and Federal resource and development agencies in a nonadversarial forum. The exchange of information and expertise among agencies provided the FWS with the best information currently available for use in the Planning Aid Letter it will develop at the Reconnaissance state of the COE study. If the COE subsequently initiates a Feasability Study, this information will be refined further and will aid the FWS in preparing its Coordination Act Report on any flood control alternative proposed by the COE. The model building and testing process also helped identify model limitations and more general information needs that should be evaluated for further study prior to preparation of an FWS Coordination Act Report. Major needs associated with the Hydrology submodel include a more detailed representation of hydrologic units (separately consider Harney Lake, Mud Lake, and Malheur Lake or the three hydrological units within Malheur Lake, rather than a combined lake system) and explicitly representation of groundwater storage and discharge in water budget calculations. A better representation of the hydrological units will require more detailed topographic data for the basin, capacity-elevation and elevation-surface area curves for each unit, and better water flow data between the units. Additional water quality parameters and constraints on proposed canal operation due to conditions in the Malheur River might also be added. Key Vegetation submodel needs include fine-tuning existing vegetation relationships in the model and adding relationships to address the influence of historical conditions on vegetation development, effects of very rapid changes in lake level, effects of wildlife populations (e.g., carp, muskrat), responses of vegetation to habitat management actions (e.g, haying, grazing, burning), and better representation of sago pondweed dynamics. A complementary geographic information system might also be developed for spatial analyses. Major needs that should be evaluated for the Wildlife submodel include addition of other wildlife species that have important effects on habitat on the Refuge (e.g., carp, muskrat) and consideration of additional life-cycle requisites and controlling variable for species presently in the model. Some of these limitations could perhaps be overcome if historical data on habitat conditions were developed to use with historical data on wildlife populations.

Oregon↗

USGS2007

Seabird behavior as an indicator of food supplies: Sensitivity across the breeding season

We used empirical data on the time allocation of common murres Uria aalge in relation to measures of local prey density to examine whether adults provisioning chicks are more sensitive to changes in prey density than birds that are incubating eggs. We hypothesized that seasonal differences in food requirements of incubating and chick-rearing parents would affect the form of the relationship between time spent at the colony and local food density. We found that the relationship did differ between the incubation and chick-rearing period in 3 important ways: (1) there was a strong non-linear relationship between food density and colony attendance during chick-rearing and a weaker relationship during incubation; (2) incubating birds were able to maintain relatively constant rates of attendance over a wider range of food densities than chick-rearing birds and only reduced colony attendance under extremely poor feeding conditions, if at all; and (3) incubating birds spent more time attending nest sites at the colony than provisioning birds. These differences confirmed that chick-rearing parents are more sensitive to changes in food density than incubating parents, and that measurements of time allocation during the incubation period would have limited value as an indicator of ecosystem change. ?? Inter-Research 2007.

Marine Ecology Progress Series↗

USGS2018

Parasitism and the biodiversity-functioning relationship

Biodiversity affects ecosystem functioning. Biodiversity may decrease or increase parasitism. Parasites impair individual hosts and affect their role in the ecosystem. Parasitism, in common with competition, facilitation, and predation, could regulate BD-EF relationships. Parasitism affects host phenotypes, including changes to host morphology, behavior, and physiology, which might increase intra- and interspecific functional diversity. The effects of parasitism on host abundance and phenotypes, and on interactions between hosts and the remaining community, all have potential to alter community structure and BD-EF relationships. Global change could facilitate the spread of invasive parasites, and alter the existing dynamics between parasites, communities, and ecosystems. Species interactions can influence ecosystem functioning by enhancing or suppressing the activities of species that drive ecosystem processes, or by causing changes in biodiversity. However, one important class of species interactions – parasitism – has been little considered in biodiversity and ecosystem functioning (BD-EF) research. Parasites might increase or decrease ecosystem processes by reducing host abundance. Parasites could also increase trait diversity by suppressing dominant species or by increasing within-host trait diversity. These different mechanisms by which parasites might affect ecosystem function pose challenges in predicting their net effects. Nonetheless, given the ubiquity of parasites, we propose that parasite–host interactions should be incorporated into the BD-EF framework.

Trends in Ecology and Evolution↗

USGS2019

Plasticity in elk migration timing is a response to changing environmental conditions

Migration is an effective behavioral strategy for prolonging access to seasonal resources and may be a resilient strategy for ungulates experiencing changing climatic conditions. In the Greater Yellowstone Ecosystem (GYE), elk are the primary ungulate, with approximately 20,000 individuals migrating to exploit seasonal gradients in forage while also avoiding energetically costly snow conditions. How climate-induced changes in plant phenology and snow accumulation are influencing elk migration timing is unknown. We present the most complete record of elk migration across the GYE, spanning 9 herds and 414 individuals from 2001 to 2017, to evaluate the drivers of migration timing and test for temporal shifts. The timing of elk departure from winter range involved a trade-off between current and anticipated forage conditions, while snow melt governed summer range arrival date. Timing of elk departure from summer range and arrival on winter range were both influenced by snow accumulation and exposure to hunting. At the GYE scale, spring and fall migration timing changed through time, most notably with winter range arrival dates becoming almost 50 days later since 2001. Predicted herd-level changes in migration timing largely agreed with observed GYE-wide changes—except for predicted winter range arrival dates which did not reflect the magnitude of change detected in the elk telemetry data. Snow melt, snow accumulation, and spring green-up dates all changed through time, with different herds experiencing different rates and directions of change. We conclude that elk migration is plastic, is a direct response to environmental cues, and that these environmental cues are not changing in a consistent manner across the GYE. The impacts of changing elk migration timing on predator–prey dynamics, carnivore–livestock conflict, disease ecology, and harvest management across the GYE are likely to be significant and complex.

Idaho, Montana, Wyoming↗

USGS2010

Responses of benthic macroinvertebrates to environmental changes associated with urbanization in nine metropolitan areas

Responses of benthic macroinvertebrates along gradients of urban intensity were investigated in nine metropolitan areas across the United States. Invertebrate assemblages in metropolitan areas where forests or shrublands were being converted to urban land were strongly related to urban intensity. In metropolitan areas where agriculture and grazing lands were being converted to urban land, invertebrate assemblages showed much weaker or nonsignificant relations with urban intensity because sites with low urban intensity were already degraded by agriculture. Ordination scores, the number of EPT taxa, and the mean pollution‐tolerance value of organisms at a site were the best indicators of changes in assemblage condition. Diversity indices, functional groups, behavior, and dominance metrics were not good indicators of urbanization. Richness metrics were better indicators of urban effects than were abundance metrics, and qualitative samples collected from multiple habitats gave similar results to those of single habitat quantitative samples (riffles or woody snags) in all metropolitan areas. Changes in urban intensity were strongly correlated with a set of landscape variables that was consistent across all metropolitan areas. In contrast, the instream environmental variables that were strongly correlated with urbanization and invertebrate responses varied among metropolitan areas. The natural environmental setting determined the biological, chemical, and physical instream conditions upon which urbanization acts and dictated the differences in responses to urbanization among metropolitan areas. Threshold analysis showed little evidence for an initial period of resistance to urbanization. Instead, assemblages were degraded at very low levels of urbanization, and response rates were either similar across the gradient or higher at low levels of urbanization. Levels of impervious cover that have been suggested as protective of streams (5–10%) were associated with significant assemblage degradation and were not protective.

Alabama, Colorado, Georgia, Massachusetts, North C↗

USGS2000

Survival and brood rearing ecology of emperor geese

Emperor Geese ( Chen canagica ) breed on the Yukon-Kuskokwim Delta in an area inhabited by three other goose species. Whereas populations of other geese increased since the mid 1980s, Emperor Goose numbers remained low. Because survival and habitat selection by broods of Emeperor Geese had not been studied previously and numbers of predatory Glaucous Gulls ( Larus hyperboreus ) had recently increased, I studied brood rearing ecology of Emperor Geese during 1993-1996 to assess whether this seasonal period could be limiting population growth. Survival of goslings to 30 days varied among years from 0.32 to 0.70 and was primarily influenced by mortality during the first five days after hatch. Other goose species with similar rates of gosling survival are increasing rapidly. Survival of Emperor Goose goslings was lowest in 1994, when unusually heavy rainfall occurred during early brood rearing. Using a long-term data set from Izembek National Wildlife Refuge, sizes of families in fall (n=23 years) were related to rainfall during early brood rearing. Gosling survival was lower and gull disturbance of broods greater in 1993-1994 than in 1995-1996. Although goslings wer commonly consumed by Glaucous Gulls, gull diets during 1993 were similar to those observed in the 1970s. Across a broad scale, broods of Emperor Geese (n=56) strongly selected habitats dominated by Carex subspathaceae, Carex ramenskii , and unvegetated areas interspersed among these forage species, as determined from telemetry. These selected habitats comprised one-third of all available habitat. Habitat selection by the composite goose community (dominated by Cackling Canada Geese [ Branta canadensis minima ]) was assessed by feces collections and differed substantially from that of Emperor Geese. Broods of Emperor Geese spent more time feeding during 1993-1996 than during an earlier study in 1985-1986. During 1994-1996, feeding rates of gosling and adult females was related more to total goose density than to Emperor Goose density. Although Cackling Canada Geese exhibited strongest selection of other habitats, their greater overall abundance resulted in numerical equivalence to Emperor Geese in habitats preferred by Emperor Geese. Interspecific competition for food has impacted behavior in Emperor Geese, which may impact growth and survival of juvenile geese.

Thesis↗

USGS2022

Evidence of a dietary shift by the Florida manatee (Trichechus manatus latirostris) in the Indian River Lagoon inferred from stomach content analyses

Investigating the long-term fluctuations of the feeding ecology of megaherbivores such as sirenians is important, as any changes could be indicative of shifts in resource availability. The Indian River Lagoon (IRL), eastern Florida, USA, is a critical habitat for the Florida manatee ( Trichechus manatus latirostris ). However, the IRL has experienced a substantial decline in seagrass due to the persistence of several harmful algal blooms. Using microhistological analysis, we examined the diet of manatees over a discontinuous sampling period spanning over 38 years using stomach contents collected from carcasses recovered in the IRL. Samples collected between 2013–2015 (post-seagrass die-off, n = 90) were compared to archived stomach samples collected between 1977–1989 (pre-seagrass die-off, n = 103). Samples analyzed from 1977–1989 contained primarily seagrasses (61.7%), followed by algae (28.4%) and vascular plants (1.7%). In contrast, stomach samples from the post-seagrass die-off primarily contained algae (49.5%), followed by seagrasses (34%) and vascular plants (2.7%). Between 1977–1989 and 2013–2015, manatees in the IRL experienced a 44.9% decline in seagrass consumption, and a 74.3% increase in algal consumption. This dietary shift was not influenced by body length, a proxy of age, or sex. Our results indicate that the dietary shift experienced by manatees is due to the decline of available seagrass forage in the IRL, and highlight the dietary plasticity of manatees in the face of changes in resource availability. However, the individual health and population-level consequences of this dietary shift are unknown. An increase in mortality due to undetermined causes in this region since 2012 can be associated with deteriorating body conditions of manatees in the IRL, possibly resulting from a lack of seagrass diet. Future research should further investigate behavioral changes affecting manatees in relation to seagrass decline in the IRL, including the energetic costs of this dietary change.

Florida↗

USGS2022

Conflict of energies: Spatially modeling mule deer caloric expenditure in response to oil and gas development

Context Wildlife avoid human disturbances, including roads and development. Avoidance and displacement of wildlife into less suitable habitat due to human development can affect their energy expenditures and fitness. The heart rate and oxygen uptake of large mammals varies with both natural aspects of their habitat (terrain, climate, predators, etc.) and anthropogenic influence (noise, light, fragmentation, etc.). Although incorporating physiological analyses of energetics can inform the impacts of both development and conservation, management decisions rarely incorporate individuals’ energetic requirements when deciding on locations for potential development. Objectives We aimed to estimate the change in expected energy expenditure, numerically and spatially, for mule deer to traverse a landscape with varying levels of oil and gas development through time. Methods Using calculations of energy expenditure of mule deer ( Odocoileus hemionus ) by weight, in relation to physical terrain components, plus avoidance factors for anthropogenic disturbance, we developed a spatiotemporal model of the minimum energy required for mule deer to traverse a landscape. We compared expected energy expenditure across 12 study sites with increasing levels of oil and gas development and over time in our study area, on the northern Colorado Plateau of Utah. Results We found that energy expenditure can be increased by development, regardless of terrain, through increased travel distance associated with avoidance behavior. Maximum median energy expenditure to traverse a 1400 ha sample area rose from 1135 to 1935 kilocalories, a 70% increase in energy required of a mule deer. There was a significant relationship between energy expenditure and the size of oil and gas development (p < 0.001), its compactness (p < 0.05), and its ‘thinness’ (p < 0.001), but not terrain ruggedness (p = 0.25). Conclusion As the energy costs of movement correlate across multiple species of large mammals, our analysis of the energetic cost, for mule deer, associated with development can serve as a quantitative representative of the impacts of oil and gas development for multiple mammals—including threatened or endangered species. Our bioenergetic cost-distance model provides a means of delineating impediments to efficient movement and can be used to quantify the expected energetic costs of proposed future developments. As wildlife are exposed to increasing anthropogenic stressors which reduce fitness, it is important to make strategic siting decisions to reduce energetic costs imposed by human activities.

Utah↗

USGS2010

Modeling amphibian energetics, habitat suitability, and movements of western toads, Anaxyrus (=Bufo) boreas, across present and future landscapes

Effective conservation of amphibian populations requires the prediction of how amphibians use and move through a landscape. Amphibians are closely coupled to their physical environment. Thus an approach that uses the physiological attributes of amphibians, together with knowledge of their natural history, should be helpful. We used Niche Mapper™ to model the known movements and habitat use patterns of a population of Western toads ( Anaxyrus (= Bufo ) boreas ) occupying forested habitats in southeastern Idaho. Niche Mapper uses first principles of environmental biophysics to combine features of topography, climate, land cover, and animal features to model microclimates and animal physiology and behavior across landscapes. Niche Mapper reproduced core body temperatures ( T c ) and evaporation rates of live toads with average errors of 1.6 ± 0.4 °C and 0.8 ± 0.2 g/h, respectively. For four different habitat types, it reproduced similar mid-summer daily temperature patterns as those measured in the field and calculated evaporation rates (g/h) with an average error rate of 7.2 ± 5.5%. Sensitivity analyses indicate these errors do not significantly affect estimates of food consumption or activity. Using Niche Mapper we predicted the daily habitats used by free-ranging toads; our accuracy for female toads was greater than for male toads (74.2 ± 6.8% and 53.6 ± 15.8%, respectively), reflecting the stronger patterns of habitat selection among females. Using these changing to construct a cost surface, we also reconstructed movement paths that were consistent with field observations. The effect of climate warming on toads depends on the interaction of temperature and atmospheric moisture. If climate change occurs as predicted, results from Niche Mapper suggests that climate warming will increase the physiological cost of landscapes thereby limiting the activity for toads in different habitats.

Idaho↗

USGS2002

Effect of growth conditions and staining procedure upon the subsurface transport and attachment behaviors of a groundwater protist

The transport and attachment behaviors of Spumella guttula (Kent), a nanoflagellate (protist) found in contaminated and uncontaminated aquifer sediments in Cape Cod, Mass., were assessed in flowthrough and static columns and in a field injection-and-recovery transport experiment involving an array of multilevel samplers. Transport of S. guttula harvested from low-nutrient (10 mg of dissolved organic carbon per liter), slightly acidic, granular (porous) growth media was compared to earlier observations involving nanoflagellates grown in a traditional high-nutrient liquid broth. In contrast to the highly retarded (retardation factor of ∼3) subsurface transport previously reported for S. guttula , the peak concentration of porous-medium-grown S. guttula traveled concomitantly with that of a conservative (bromide) tracer. About one-third of the porous-medium-grown nanoflagellates added to the aquifer were transported at least 2.8 m downgradient, compared to only ∼2% of the broth-grown nanoflagellates. Flowthrough column studies revealed that a vital (hydroethidine [HE]) staining procedure resulted in considerably less attachment (more transport) of S. guttula in aquifer sediments than did a staining-and-fixation procedure involving 4′,6′-diamidino-2-phenylindole (DAPI) and glutaraldehyde. The calculated collision efficiency (∼10 −2 for porous-medium-grown, DAPI-stained nanoflagellates) was comparable to that observed earlier for the indigenous community of unattached groundwater bacteria that serve as prey. The attachment of HE-labeled S. guttula onto aquifer sediment grains was independent of pH (over the range from pH 3 to 9) suggesting a primary attachment mechanism that may be fundamentally different from that of their prey bacteria, which exhibit sharp decreases in fractional attachment with increasing pH. The high degree of mobility of S. guttula in the aquifer sediments has important ecological implications for the protistan community within the temporally changing plume of organic contaminants in the Cape Cod aquifer.

Applied and Environmental Microbiology↗

USGS2025

Similar population dynamics before and after a chytridiomycosis outbreak in a tropical riparian amphibian species

Emerging infectious diseases can cause rapid, widespread host mortality, and the lack of demographic data before and after pathogen emergence complicates understanding mechanisms of host persistence. This challenge is further compounded by environmental conditions that influence host behavior, while driving pathogen growth and virulence. These interactions create complex disease outcomes that hinder predictions of when and how hosts endure pathogen outbreaks. Here, we analyzed 10 years of capture-mark-recapture data (2000–2014) spanning wet and dry seasons for male Espadarana prosoblepon in El Copé, Panama, encompassing a period before (2000–2004) and after (2010–2014) a Batrachochytrium dendrobatidis ( Bd ) outbreak using Jolly-Seber models. We found that post- Bd male E. prosoblepon population size (range in mean population size among primary periods = 136–225 individuals) was similar to pre- Bd population size (range in mean population size among primary periods = 201–242 individuals). Pre- Bd , average monthly survival probability in the wet season was 0.93 (95% credible interval [CI] = 0.90–0.96). Post- Bd , uninfected individuals had survival probability higher in the wet season (mean = 0.97; [95% CI = 0.95–0.98]) than the dry season (mean = 0.90 [95% CI = 0.84–0.94]), while survival probability for infected individuals decreased as a function of Bd infection intensity. Pre- Bd , mean monthly per-capita entry probability was 0.07 (95% CI = 0.05–0.10), and post- Bd , mean monthly per-capita entry probability was 0.06 (95% CI = 0.00–0.10). Lastly, infection probability during the wet season was lower (mean = 0.04 [95% CI = 0.03–0.05]) than the dry season (mean = 0.10 [95% CI = 0.05–0.15]), and recovery probability during the wet season was lower (mean = 0.19 [95% CI = 0.11–0.28]) than the dry season (mean = 0.54 [95% CI = 0.20–0.88]). Our findings suggest that survival probabilities of uninfected individuals, as well as per-capita entry probabilities, are similar pre- and post- Bd , leading to a stable and similar sized pre- Bd population. These results contribute to understanding disease dynamics and tropical amphibian ecology.

Ecosphere↗

USGS2016

Evaluating within-population variability in behavior and demography for the adaptive potential of a dispersal-limited species to climate change

Multiple pathways exist for species to respond to changing climates. However, responses of dispersal-limited species will be more strongly tied to ability to adapt within existing populations as rates of environmental change will likely exceed movement rates. Here, we assess adaptive capacity in Plethodon cinereus , a dispersal-limited woodland salamander. We quantify plasticity in behavior and variation in demography to observed variation in environmental variables over a 5-year period. We found strong evidence that temperature and rainfall influence P. cinereus surface presence, indicating changes in climate are likely to affect seasonal activity patterns. We also found that warmer summer temperatures reduced individual growth rates into the autumn, which is likely to have negative demographic consequences. Reduced growth rates may delay reproductive maturity and lead to reductions in size-specific fecundity, potentially reducing population-level persistence. To better understand within-population variability in responses, we examined differences between two common color morphs. Previous evidence suggests that the color polymorphism may be linked to physiological differences in heat and moisture tolerance. We found only moderate support for morph-specific differences for the relationship between individual growth and temperature. Measuring environmental sensitivity to climatic variability is the first step in predicting species' responses to climate change. Our results suggest phenological shifts and changes in growth rates are likely responses under scenarios where further warming occurs, and we discuss possible adaptive strategies for resulting selective pressures.

Ecology and Evolution↗

USGS2013

Niche overlap, threshold food densities, and limits to prey depletion for a diving duck assemblage in an estuarine bay

Planning for marine conservation often requires estimates of the amount of habitat needed to support assemblages of interacting species. During winter in subtidal San Pablo Bay, California, the 3 main diving duck species are lesser scaup Aythya affinis (LESC), greater scaup A. marila (GRSC), and surf scoter Melanitta perspicillata (SUSC), which all feed almost entirely on the bivalve Corbula amurensis . Decreased body mass and fat, increased foraging effort, and major departures of these birds appeared to result from food limitation. Broad overlap in prey size, water depth, and location suggested that the 3 species responded similarly to availability of the same prey. However, an energetics model that accounts for differing body size, locomotor mode, and dive behavior indicated that each species will become limited at different stages of prey depletion in the order SUSC, then GRSC, then LESC. Depending on year, 35 to 66% of the energy in Corbula standing stocks was below estimated threshold densities for profitable foraging. Ectothermic predators, especially flounders and sturgeons, could reduce excess carrying capacity for different duck species by 4 to 10%. A substantial quantity of prey above profitability thresholds was not exploited before most ducks left San Pablo Bay. Such pre-depletion departure has been attributed in other taxa to foraging aggression. However, in these diving ducks that showed no overt aggression, this pattern may result from high costs of locating all adequate prey patches, resulting reliance on existing flocks to find food, and propensity to stay near dense flocks to avoid avian predation. For interacting species assemblages, modeling profitability thresholds can indicate the species most vulnerable to food declines. However, estimates of total habitat needed require better understanding of factors affecting the amount of prey above thresholds that is not depleted before the predators move elsewhere.

Marine Ecology Progress Series↗