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At least 919 records · Page 51Linked to original sources

USGS2020

Field-based method for assessing duration of infectivity for influenza A viruses in the environment

Understanding influenza A virus (IAV) persistence in wetlands is limited by a paucity of field studies relating to the maintenance of infectivity over time. The duration of IAV infectivity in water has been assessed under variable laboratory conditions, but results are difficult to translate to more complex field conditions. We tested a field-based method to assess the viability of IAVs in an Alaska wetland during fall and winter which incorporated physical and chemical properties of the waterbody in which samples were held. Filtered pond water was inoculated with avian fecal samples collected from the environment, aliquoted into a series of duplicate sealed vials and submerged back in the wetland for up to 132 days (October 2018–March 2019). Sample aliquots were sequentially recovered and tested for IAVs by rRT-PCR and virus isolation. One sample remained rRT-PCR positive for the duration of the study and virus isolation positive for 118 days. The surrounding water temperature was 1°–6 °C with near neutral pH (6.6–7.3) for the duration of the study. This proof of concept study demonstrates a protocol for testing the persistence of infectious IAV naturally shed from waterfowl under ambient environmental conditions.

Alaska↗

USGS2016

Blood selenium concentrations in female Pacific black brant molting in Arctic Alaska: Relationships with age and habitat salinity

Blood samples collected from 81 female Pacific black brant ( Branta bernicla nigricans ) molting near Teshekpuk Lake, Alaska, were analyzed for selenium concentration. The concentration of selenium in blood of after second year (hatched two or more years ago) females (0.84 μg/g wet weight) was significantly greater than the concentration in second year (hatched the previous year) females (0.61 μg/g wet weight). The concentrations of selenium we found in blood of black brant were 1.5 to 2 times greater than baseline values typical of freshwater birds, but considerably lower than reported in other marine waterfowl sampled in Alaska. This finding may be attributable in part to the nearly exclusive herbivorous diet of black brant. No relationship was noted between blood selenium concentration and molting habitat salinity. We are unaware of any previous reports of blood selenium concentrations in black brant.

Alaska↗

USGS2016

Limited evidence of intercontinental dispersal of avian paramyxovirus serotype 4 by migratory birds

Avian paramyxovirus serotype 4 (APMV-4) is a single stranded RNA virus that has most often been isolated from waterfowl. Limited information has been reported regarding the prevalence, pathogenicity, and genetic diversity of AMPV-4. To assess the intercontinental dispersal of this viral agent, we sequenced the fusion gene of 58 APMV-4 isolates collected in the United States, Japan and the Ukraine and compared them to all available sequences on GenBank. With only a single exception the phylogenetic clades of APMV-4 sequences were monophyletic with respect to their continents of origin (North America, Asia and Europe). Thus, we detected limited evidence for recent intercontinental dispersal of APMV-4 in this study.

Infection, Genetics and Evolution↗

USGS2013

Mercury cycling in agricultural and managed wetlands of California: seasonal influences of vegetation on mercury methylation, storage, and transport

Plants are a dominant biologic and physical component of many wetland capable of influencing the internal pools and fluxes of methylmercury (MeHg). To investigate their role with respect to the latter, we examined the changing seasonal roles of vegetation biomass and Hg, C and N composition from May 2007-February 2008 in 3 types of agricultural wetlands (domesticated or white rice, wild rice, and fallow fields), and in adjacent managed natural wetlands dominated by cattail and bulrush (tule). We also determined the impact of vegetation on seasonal microbial Hg methylation rates, and Hg and MeHg export via seasonal storage in vegetation, and biotic consumption of rice seed. Despite a compressed growing season of ~ 3 months, annual net primary productivity (NPP) was greatest in white rice fields and carbon more labile (leaf median C:N ratio = 27). Decay of senescent litter (residue) was correlated with microbial MeHg production in winter among all wetlands. As agricultural biomass accumulated from July to August, THg concentrations declined in leaves but MeHg concentrations remained consistent, such that MeHg pools generally increased with growth. Vegetation provided a small, temporary, but significant storage term for MeHg in agricultural fields when compared with hydrologic export. White rice and wild rice seeds reached mean MeHg concentrations of 4.1 and 6.2 ng g dw - 1 , respectively. In white rice and wild rice fields, seed MeHg concentrations were correlated with root MeHg concentrations (r = 0.90, p < 0.001), suggesting transport of MeHg to seeds from belowground tissues. Given the proportionally elevated concentrations of MeHg in rice seeds, white and wild rice crops may act as a conduit of MeHg into biota, especially waterfowl which forage heavily on rice seeds within the Central Valley of California, USA. Thus, while plant tissues and rhizosphere soils provide temporary storage for MeHg during the growing season, export of MeHg is enhanced post-harvest through increased hydrologic and biotic export.

California↗

USGS2016

Hydrologic indicators of hot spots and hot moments of mercury methylation potential along river corridors

The biogeochemical cycling of metals and other contaminants in river-floodplain corridors is controlled by microbial activity responding to dynamic redox conditions. Riverine flooding thus has the potential to affect speciation of redox-sensitive metals such as mercury (Hg). Therefore, inundation history over a period of decades potentially holds information on past production of bioavailable Hg. We investigate this within a Northern California river system with a legacy of landscape-scale 19th century hydraulic gold mining. We combine hydraulic modeling, Hg measurements in sediment and biota, and first-order calculations of mercury transformation to assess the potential role of river floodplains in producing monomethylmercury (MMHg), a neurotoxin which accumulates in local and migratory food webs. We identify frequently inundated floodplain areas, as well as floodplain areas inundated for long periods. We quantify the probability of MMHg production potential (MPP) associated with hydrology in each sector of the river system as a function of the spatial patterns of overbank inundation and drainage, which affect long-term redox history of contaminated sediments. Our findings identify river floodplains as periodic, temporary, yet potentially important, loci of biogeochemical transformation in which contaminants may undergo change during limited periods of the hydrologic record. We suggest that inundation is an important driver of MPP in river corridors and that the entire flow history must be analyzed retrospectively in terms of inundation magnitude and frequency in order to accurately assess biogeochemical risks, rather than merely highlighting the largest floods or low-flow periods. MMHg bioaccumulation within the aquatic food web in this system may pose a major risk to humans and waterfowl that eat migratory salmonids, which are being encouraged to come up these rivers to spawn. There is a long-term pattern of MPP under the current flow regime that is likely to be accentuated by increasingly common large floods with extended duration.

California↗

USGS2024

Molecular detection and characterization of highly pathogenic H5N1 clade 2.3.4.4b avian influenza viruses among hunter-harvested wild birds provides evidence for three independent introductions into Alaska

We detected and characterized highly pathogenic avian influenza viruses among hunter-harvested wild waterfowl inhabiting western Alaska during September–October 2022 using a molecular sequencing pipeline applied to RNA extracts derived directly from original swab samples. Genomic characterization of 10 H5 clade 2.3.4.4b avian influenza viruses detected with high confidence provided evidence for three independent viral introductions into Alaska. Our results highlight the utility and some potential limits of applying molecular processing approaches directly to RNA extracts from original swab samples for viral research and monitoring.

Alasak↗

USGS2008

Fecal indicator bacteria and Salmonella in ponds managed as bird habitat, San Francisco Bay, California, USA

Throughout the world, coastal resource managers are encouraging the restoration of previously modified coastal habitats back into wetlands and managed ponds for their ecosystem value. Because many coastal wetlands are adjacent to urban centers and waters used for human recreation, it is important to understand how wildlife can affect water quality. We measured fecal indicator bacteria (FIB) concentrations, presence/absence of Salmonella, bird abundance, and physico-chemical parameters in two coastal, managed ponds and adjacent sloughs for 4 weeks during the summer and winter in 2006. We characterized the microbial water quality in these waters relative to state water-quality standards and examined the relationship between FIB, bird abundance, and physico-chemical parameters. A box model approach was utilized to determine the net source or sink of FIB in the ponds during the study periods. FIB concentrations often exceeded state standards, particularly in the summer, and microbial water quality in the sloughs was generally lower than in ponds during both seasons. Specifically, the inflow of water from the sloughs to the ponds during the summer, more so than waterfowl use, appeared to increase the FIB concentrations in the ponds. The box model results suggested that the ponds served as net wetland sources and sinks for FIB, and high bird abundances in the winter likely contributed to net winter source terms for two of the three FIB in both ponds. Eight serovars of the human pathogen Salmonella were isolated from slough and pond waters, although the source of the pathogen to these wetlands was not identified. Thus, it appeared that factors other than bird abundance were most important in modulating FIB concentrations in these ponds.

Water Research↗

USGS2025

Application of mercury stable isotopes to examine sources and hydrologic factors impacting mercury bioaccumulation and cycling in invertebrates of a model saline lake

Invertebrates, such as brine shrimp and brine flies, are key prey items for millions of resident and migratory birds that utilize saline lakes such as Great Salt Lake (GSL). Elevated methylmercury (MeHg) in invertebrate and waterfowl species of GSL has been assumed to be linked to elevated MeHg in GSL’s anoxic Deep Brine Layer (DBL) where aqueous concentrations can exceed 30 ng/L. Here, we leverage mercury (Hg) concentration and stable isotope measurements on brine flies ( Ephydra hians and Ephydra cinerea ), brine shrimp ( Artemia franciscana ), and spider (western spotted orbweaver [ Neoscona oaxacensis ]) to examine temporal changes in Hg concentrations and sources during periods of DBL presence and absence. Mercury concentrations in brine flies were inversely correlated with lake level and directly correlated with salinity, possibly resulting from factors such as enhanced Hg bioaccumulation due to osmoregulatory stress and stunted growth and/or elevated salinities impacting composition, abundance, and Hg concentrations of food sources. DBL presence did not correspond to higher invertebrate Hg concentrations, highlighting that the DBL is not the primary source of MeHg to biota. Hg stable isotope signatures (Δ 199 Hg and δ 202 Hg) in brine shrimp varied seasonally and indicated greater cumulative photochemical Hg loss from the water column in late summer and fall months. Co-located brine fly and western spotted orbweaver samples show equivalent Δ 199 Hg and δ 202 Hg signatures, supporting Hg transfer from the aquatic to terrestrial food webs. Furthermore, Hg isotope results (Δ 200 Hg) indicate that the majority of Hg accumulating in GSL invertebrates is of atmospheric origin. This study highlights temporal controls on Hg bioaccumulation within GSL, which will help assess Hg cycling within the system in response to management actions and declining lake levels.

Utah↗

USGS1997

Spatial and temporal heterogeneity in metallic elements in industrialized aquatic bird habitat

This study examined the potential for exposure of migratory aquatic birds to contaminants in highly industrialized habitats at Baltimore Harbor, Maryland. Seven nearshore, benthic sites were sampled every 3 or 6 months from June 1987 to December 1988. Twenty metallic elements were measured in composites (i.e. annelids, amphipods, and isopods were pooled), clams, and sediments. Elevated concentrations were widespread throughout the sites, depending on the element. Most concentrations in composites were lowest at sites innermost and outside the harbor. Higher concentrations in composites were not related to season. Most concentrations were higher in composites than in sediments or clams, but they varied by element for clams and sediments. The largest flock of wintering waterfowl frequented the site exhibiting the highest concentrations of most elements ( p < 0.0001). Average concentrations of known toxic elements were probably not harmful to aquatic birds or their prey, but the highest detected concentrations of eight elements warrant caution. At least eight other elements exceeded background concentrations, but toxicity to birds or their prey are unknown.

Maryland↗

USGS1998

Elemental contaminants in the livers and ingesta of four subpopulations of the American coot (Fulica americana): An herbivorous winter migrant in San Francisco Bay

Water birds with diets high in animal foods in the San Francisco Bay area are exposed to trace elements that are potentially health impairing. Water birds with herbivorous diets have been less thoroughly examined. The concentrations of trace elements in the livers and the esophageal contents of an herbivorous water bird, the American coot ( Fulica americana ) were measured to compare levels of contaminant exposure among different locations in the Bay system and with other water birds. A total of 39 coots were collected from four sites: Napa River and Mare Island Strait in the north, Berkeley in the middle, and Coyote Creek in the south. Livers of Berkeley samples differed significantly from those of Napa River and Mare Island Strait by their greater concentrations of As and B and lower concentrations of Cu, but they seemed to be within normal ranges for birds. Otherwise the concentrations of trace elements in the livers did not differ among sites. Ingesta samples from Berkeley differed from the other sites because they tended to be higher in Al, V, and Zn. In contrast to waterfowl, livers from the herbivorous coots in San Francisco Bay showed little exposure to Cd, Hg, Pb, or Se. Coot ingesta showed few samples with measurable levels of Cd, Hg, or Se and had low levels of Pb. The herbivorous diet of coots may shield them from exposure to such elements. However, high levels of V were present in coot livers and ingesta from all four sites, suggesting adaptation to this toxic element.

California↗

USGS1996

Movement patterns of wintering lesser scaup in Grand Calumet River - Indiana Harbor Canal, Indiana

Lesser scaup ( Aythya affinis ) winter in the Grand Calumet River—Indiana Harbor Canal (GCR-IHC) drainage into southern Lake Michigan, a polluted oasis in the highly urban and industrial corridor of northern Illinois and Indiana. The GCR-IHC is an important wintering area for lesser scaup in northwestern Indiana, especially after Lake Michigan freezes, because of the lack of other wildlife habitat in the area. We investigated the feeding and movement patterns of these wintering lesser scaup to better understand the ecological significance of this area to wintering waterfowl and to interpret contaminant levels in these lesser scaup. We implanted radio transmitters in 20 individuals in January 1994 and tracked them until early March 1994. Four lesser scaup disappeared and four died within the first 2 weeks after implantation; 12 lesser scaup remained in the GCR-IHC for the next 6–7 weeks. Individual radio-marked scaup (n = 12) were located in the GCR-IHC on an average of 62.2% (extreme values = 25–87%) of the searches. No radio-marked lesser scaup were located outside the GCR-IHC. Lesser scaup were feeding during 23% of the radio fixes.

Journal of Great Lakes Research↗

USGS2012

Maximizing the utility of monitoring to the adaptive management of natural resources

Data collection is an important step in any investigation about the structure or processes related to a natural system. In a purely scientific investigation (experiments, quasi-experiments, observational studies), data collection is part of the scientific method, preceded by the identification of hypotheses and the design of any manipulations of the system to test those hypotheses. Data collection and the manipulations that precede it are ideally designed to maximize the information that is derived from the study. That is, such investigations should be designed for maximum power to evaluate the relative validity of the hypotheses posed. When data collection is intended to inform the management of ecological systems, we call it monitoring. Note that our definition of monitoring encompasses a broader range of data-collection efforts than some alternative definitions – e.g. Chapter 3. The purpose of monitoring as we use the term can vary, from surveillance or “thumb on the pulse” monitoring (see Nichols and Williams 2006), intended to detect changes in a system due to any non-specified source (e.g. the North American Breeding Bird Survey), to very specific and targeted monitoring of the results of specific management actions (e.g. banding and aerial survey efforts related to North American waterfowl harvest management). Although a role of surveillance monitoring is to detect unanticipated changes in a system, the same result is possible from a collection of targeted monitoring programs distributed across the same spatial range (Box 4.1). In the face of limited budgets and many specific management questions, tying monitoring as closely as possible to management needs is warranted (Nichols and Williams 2006). Adaptive resource management (ARM; Walters 1986, Williams 1997, Kendall 2001, Moore and Conroy 2006, McCarthy and Possingham 2007, Conroy et al. 2008a) provides a context and specific purpose for monitoring: to evaluate decisions with respect to achievement of specific management objectives; and to evaluate the relative validity of predictive system models. This latter purpose is analogous to the role of data collection within the scientific method, in a research context.

Book chapter↗

USGS2019

Synthesis of maternal transfer of mercury in birds: Implications for altered toxicity risk

Maternal transfer is the predominant route of methylmercury (MeHg) exposure to offspring. We reviewed and synthesized published and unpublished data on maternal transfer of MeHg in birds. Using paired samples of females’ blood (n=564) and their eggs (n=1814) from 26 bird species in 6 taxonomic orders, we conducted a meta-analysis to evaluate whether maternal transfer of MeHg to eggs differed among species and caused differential toxicity risk to embryos. Total mercury (THg) concentrations in eggs increased with maternal blood THg concentrations; however, the proportion of THg transferred from females to their eggs differed among bird taxa and with maternal THg exposure. Specifically, a smaller proportion of maternal THg was transferred to eggs with increasing female THg concentrations. Additionally, the proportion of THg that was transferred to eggs at the same maternal blood THg concentration differed among taxonomic orders, with waterfowl (Anseriformes) transferring up to 382% more THg into their eggs than songbirds (Passeriformes). We provide equations to predict THg concentrations in eggs using female blood THg concentrations, and vice versa, which may help translate toxicity benchmarks across tissues and life stages. Our results indicate that toxicity risk of MeHg can vary among bird taxa due to differences in the maternal transfer of MeHg to offspring.

Environmental Science & Technology↗

USGS2023

Environmental surveillance and detection of infectious highly pathogenic avian influenza virus in Iowa wetlands

Avian influenza viruses (AIVs) infect both wild birds and domestic poultry, resulting in economically costly outbreaks that have the potential to impact public health. Currently, a knowledge gap exists regarding the detection of infectious AIVs in the aquatic environment. In response to the 2021–2022 Eurasian strain highly pathogenic avian influenza (HPAI) A/goose/Guangdong/1/1996 clade 2.3.4.4 lineage H5 outbreak, an AIV environmental outbreak response study was conducted using a One Health approach. An optimized method was used to temporally sample (April and May 2022) and analyze (culture and molecular methods) surface water from five water bodies (four wetlands and one lake used as a comparison location) in areas near confirmed HPAI detections in wild bird or poultry operations. Avian influenza viruses were isolated from water samples collected in April from all four wetlands (not from the comparison lake sample); HPAI H5N1 was isolated from one wetland. No virus was isolated from the May samples. Several factors, including increased water temperatures, precipitation, biotic and abiotic factors, and absence of AIV-contaminated fecal material due to fewer waterfowl present, may have contributed to the lack of virus isolation from May samples. Results demonstrate surface water as a plausible medium for transmission of AIVs, including the HPAI virus.

Iowa↗

USGS1999

Bioassessment of mercury, cadmium, polychlorinated biphenyls, and pesticides in the upper Mississippi river with Zebra mussels (Dreissena polymorpha)

Zebra mussels ( Dreissena polymorpha ) were sampled from artificial substrates deployed from May 30 to October 19, 1995, at 19 locks and dams from Minneapolis, MN, to Muscatine, IA. Analyses of composite tissue samples of zebra mussels (10−20-mm length) revealed accumulation of mercury (Hg), cadmium (Cd), and polychlorinated biphenyls (PCBs) during a 143-d exposure period. Concentrations of total Hg ranged from 2.6 to 6.1 ng/g wet weight and methylmercury (CH 3 Hg) from 1.0 to 3.3 ng/g wet weight. About 50% (range 30−70%) of the mean total Hg in zebra mussels was CH 3 Hg. Cadmium ranged from 76 to 213 ng/g wet weight. Concentrations of total PCBs (Aroclor 1254) in zebra mussels varied longitudinally (range 1000−7330 ng/g lipid weight), but the composition of PCB congeners (total of 21 measured) was similar throughout the river. Chlordane and dieldrin were the only two pesticides detected of the 15 analyzed. Zebra mussels are sentinels of contaminant bioavailability in the Upper Mississippi River and may be an important link in the trophic transfer of contaminants in the river because of their increasing importance in the diets of certain fish and waterfowl.

Illinois, Iowa, Minnesota, Missouri, Wisconsin↗

USGS1999

Persistence of high lead concentrations and associated effects in Tundra Swans captured near a mining and smelting complex in northern Idaho

Lead poisoning of waterfowl, particularly tundra swans ( Cygnus columbianus ), has been documented in the Coeur d'Alene River Basin in northern Idaho for nearly a century. Over 90% of the lead-poisoned tundra swans in this area that were necropsied have no ingested lead shot. Spent lead shot from hunting activities over the years is therefore a minor source of lead in these swans. The migrating swans accumulated lethal burdens of lead from ingestion of sediments and aquatic vegetation during a short stopover in the spring. The lead originated from mining and smelting activities. Lead concentrations and physiological characteristics of blood were compared in swans captured in swim-in traps, with moribund swans caught by hand in the lead-contaminated area in 1987 and 1994–1995 and with birds captured by night-lighting in reference areas in 1994–1995. Blood lead concentrations in swans were highest in moribund birds (3.3 μg g -1 in 1987 and 1995), intermediate in those trapped in the contaminated area (0.82 μg g -1 in 1987 and 1.8 μg g -1 in 1995), and lowest (0.11 μg g -1 ) in those trapped in the reference areas. δ-aminolevulinic acid dehydratase (ALAD) was significantly inhibited in swans from the contaminated area. Hematocrit and hemoglobin were significantly depressed only in moribund swans. Of the 19 swans found moribund and euthanized, 18 were classified as having lead toxicosis on the basis of lead levels in blood (1.3 to 9.6 μg g -1 ) and livers (6 to 40 μg g -1 ) and necropsy findings. The 19th swan had aspergillosis. There was no evidence that effects of lead on tundra swans had diminished from 1987 to 1995.

Idaho↗

USGS1998

Blood lead concentrations of spectacled eiders near the Kashunuk River, Yukon Delta National Wildlife Refuge, Alaska

We collected, 342 blood samples from spectacled eiders ( Somateria fischeri ) on their breeding grounds in western Alaska from late May through to early August 1993–1995. Lead concentrations of ≥0.50 p.p.m. wet weight were found in the blood of 20% of the adult female eiders, 2% of the adult males and 6% of the ducklings. Lead was detected (≥0.02 p.p.m.) more frequently in the blood of adult females than in adult males or ducklings and the maximum concentrations were 14.37, 0.50 and 4.28 p.p.m. wet weight, respectively. In adult females, there was a significant difference in the proportion of detectable blood lead concentrations between three collection times (arrival/nesting, hatch and brood rearing), with the highest proportion (92%) occurring at hatch. Nine hens with blood lead concentrations of ≥0.50 p.p.m. were captured a second time several weeks to 1 year later. In the hens sampled twice at intervals of several weeks, the blood lead concentrations increased and declined at mean daily rates of 1.10 and 0.94, respectively. The lead concentrations in the blood of adults were not correlated with body weights. Radiographs were taken of 119 eiders and corresponding blood samples from 98 of these birds were analysed for lead. Ingested shot was seen in X-rays of 12 adults and three ducklings and, of the 13 blood samples tested, all had detectable lead concentrations. Of the birds without radiographic evidence of ingested shot, 84% of the adult females, 19% of the adult males and 17% of the ducklings had detectable lead concentrations in their blood. Breeding ground exposure of waterfowl to lead shot is unusual and is of particular concern in spectacled eiders because of their threatened status and declining numbers in western Alaska.

Alaska↗

USGS2011

A whole ecosystem approach to studying climate change in interior Alaska

Yukon River Basin Principal Investigators Workshop; Portland, Oregon, 18-20 January 2011; High latitudes are known to be particularly susceptible to climate warming, leading to an emphasis of field and modeling research on arctic regions. Subarctic and boreal regions such as the Yukon River Basin (YRB) of interior Alaska and western Canada are less well studied, although they encompass large areas that are vulnerable to changes in forest composition, permafrost distribution, and hydrology. There is an urgent need to understand the resiliency and vulnerability of these complex ecosystems as well as their feedbacks to the global climate system. Consequently, U.S. Geological Survey scientists, with other federal agency, university, and private industry partners, is focusing subarctic interdisciplinary studies on the Beaver Creek Wild and Scenic River watershed (http://www.blm.gov/pgdata/content/ak/en/prog/nlcs/beavercrk_nwsr.html) and Yukon Flats National Wildlife Refuge (http://yukonflats.fws.gov/) in the YRB, south and west of Fort Yukon, Alaska. These areas are national treasures of wetlands, lakes, and uplands that support large populations of wildlife and waterfowl and are home to vibrant native Alaskan communities that depend on the area for a subsistence lifestyle.

Alaska↗