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Building the vegetation drought response index for Canada (VegDRI-Canada) to monitor agricultural drought: first results

Drought is a natural climatic phenomenon that occurs throughout the world and impacts many sectors of society. To help decision-makers reduce the impacts of drought, it is important to improve monitoring tools that provide relevant and timely information in support of drought mitigation decisions. Given that drought is a complex natural hazard that manifests in different forms, monitoring can be improved by integrating various types of information (e.g., remote sensing and climate) that is timely and region specific to identify where and when droughts are occurring. The Vegetation Drought Response Index for Canada (VegDRI-Canada) is a recently developed drought monitoring tool for Canada. VegDRI-Canada extends the initial VegDRI concept developed for the conterminous United States to a broader transnational coverage across North America. VegDRI-Canada models are similar to those developed for the United States, integrating satellite observations of vegetation status, climate data, and biophysical information on land use and land cover, soil characteristics, and other environmental factors. Collectively, these different types of data are integrated into the hybrid VegDRI-Canada to isolate the effects of drought on vegetation. Twenty-three weekly VegDRI-Canada models were built for the growing season (April–September) through the weekly analysis of these data using a regression tree-based data mining approach. A 15-year time series of VegDRI-Canada results (s to 2014) was produced using these models and the output was validated by randomly selecting 20% of the historical data, as well as holdout year (15% unseen data) across the growing season that the Pearson’s correlation ranged from 0.6 to 0.77. A case study was also conducted to evaluate the VegDRI-Canada results over the prairie region of Canada for two drought years and one non-drought year for three weekly periods of the growing season (i.e., early-, mid-, and late season). The comparison of the VegDRI-Canada map with the Canadian Drought Monitor (CDM), an independent drought indicator, showed that the VegDRI-Canada maps depicted key spatial drought severity patterns during the two targeted drought years consistent with the CDM. In addition, VegDRI-Canada was compared with canola yields in the Prairie Provinces at the regional scale for a period from 2000 to 2014 to evaluate the indices’ applicability for monitoring drought impacts on crop production. The result showed that VegDRI-Canada values had a relatively higher correlation (i.e., r > 0.5) with canola yield for nonirrigated croplands in the Canadian Prairies region in areas where drought is typically a limiting factor on crop growth, but showed a negative relationship in the southeastern Prairie region, where water availability is less of a limiting factor and in some cases a hindrance to crop growth when waterlogging occurs. These initial results demonstrate VegDRI-Canada’s utility for monitoring drought-related vegetation conditions, particularly in drought prone areas. In general, the results indicated that the VegDRI-Canada models showed sensitivity to known agricultural drought events in Canada over the 15-year period mainly for nonirrigated areas.

GIScience and Remote Sensing↗

Riparian ecosystem creation and restoration: a literature summary

Riparian ecosystems generally compose a minor proportion of surrounding areas, but typically are more structurally diverse and more productive in plant and animal biomass than adjacent upland areas. Riparian areas supply food, cover, and water (especially important in the arid West) for a large diversity of animals, and serve as migration routes and forest connectors between habitats for a variety of wildlife, particularly ungulates and birds. Because riparian ecosystems often are relatively small areas and occur in conjunction with waterways, they are vulnerable to severe alteration. Riparian ecosystems throughout the U.S. have been heavily impacted by man's activities. Riparian ecosystem creation and restoration have been used as mitigation for project impacts from highway, bridge, and pipeline construction; water development; flood control channel modifications; industrial and residential development; agriculture; irrigation; livestock grazing; mining; and accidental habitat loss. Creation of a riparian ecosystem in| a more mesic upland area (e.g., ‘grassland or cropland) adjacent to a river requires appropriate water supply and grading the topography to suitable elevations to support plantings of riparian vegetation. Restoration involves returning the ecosystem to pre disturbance conditions and typically implies revegetation. Removing exotic vegetation or restoring water supplies to pre disturbance level also may be involved. Enhancement of riparian ecosystems commonly refers to improving existing conditions to increase habitat value, usually by increasing plant or community diversity to increase value for wildlife. Managing a riparian ecosystem typically involves enhancement techniques. However, creation and restoration projects often involve use of techniques considered more management-oriented (e.g., fencing to prevent cattle grazing until planted vegetation of a created or restored wetland is established). Protection of an existing riparian ecosystem from impact should be of utmost importance during planning and construction phases of development projects. If loss or damage is unavoidable, wetland creation or restoration can be used as mitigation. Compared to other wetland types (e.g., coastal wetlands), projects and techniques involving creation or restoration of riparian ecosystems are not well documented. For example, only 8% of the records in the WCR Data Base contained information on riparian ecosystems, whereas 31% of the records contained information on coastal emergent or forested ecosystems. To provide a source of currently available literature, riparian information from 92 records (primarily published papers or reports) in the U.S. Fish and Wildlife Service's (FWS) Wetland Creation-Restoration (WCR) Data Base (Schneller-McDonald et al. 1988) was used to develop a literature summary of creation and restoration of riparian ecosystems. The summary provides an overview of the status of riparian ecosystems in the U.S., a discussion of several riparian functions, and a review of some techniques used for planning, implementing, monitoring, and measuring project success of creation-restoration efforts. Case studies of various creation or restoration projects are used to demonstrate these techniques and to report some results of their use. Several well-documented case studies are discussed in detail to illustrate more extensive efforts to plan, implement, or monitor riparian ecosystem creation-restoration projects. For the purpose of this report, riparian ecosystems are defined as landscapes adjacent to drainageways of floodplains that exhibit vegetation, soil, and hydrologic mosaics along topographic and moisture gradients that are distinct from the predominant landscape surface types. Major plant communities are described under palustrine system in Cowardin et al. (1979). Literature from the WCR Data Base was used to provide a summary of riparian ecosystem creation-restoration literature. Thus, information concerning natural systems is not included unless discussed in these articles. This focus allows the reader to compare relative information available on riparian ecosystem creation-restoration efforts. However, this focus also results in limited information in some sections of the report (e.g., Status of Riparian Ecosystems in the U.S.). Individuals involved in riparian ecosystem creation-restoration efforts are encouraged to thoroughly examine available literature on natural and altered systems. Brinson et al. (1981) provide a comprehensive review and synthesis of the ecology and status of riparian ecosystems. Over 500 articles are cited in their 124-page report. Chapters include the following topics: status of riparian ecosystems in the U.S., ecological functions and properties of riparian ecosystems (e.g., geomorphology, primary productivity, nutrient cycling, hydrology), importance of riparian ecosystems to fish and wildlife, and considerations in valuation (ecologic and economic) of riparian ecosystems. Brinson et al. (1981) also discuss management of riparian ecosystems. Riparian ecosystem management literature was not included in the WCR Data Base, unless the article also discussed creation or restoration.

Report↗

Assessment of Fish Habitat, Water Quality, and Selected Contaminants in Streambed Sediments in Noyes Slough, Fairbanks, Alaska, 2001-2002

During 2001-2002, the U.S. Geological Survey sampled streambed sediment at 23 sites, measured water quality at 26 sites, and assessed fish habitat for the entire length of Noyes Slough, a 5.5-mile slough of the Chena River in Fairbanks, Alaska. These studies were undertaken to document the environmental condition of the slough and to provide information to the public for consideration in plans to improve environmental conditions of the waterway. The availability of physical habitat for fish in the slough does not appear to be limited, although some beaver dams and shallow water may restrict movement, particularly during low flow. Elevated water temperatures in summer and low dissolved-oxygen concentrations are the principle factors adversely affecting water quality in Noyes Slough. Increased flow mitigated poor water-quality conditions and reduced the number of possible fish barriers. Flow appears to be the most prominent mechanism shaping water quality and fish habitat in Noyes Slough. Streambed sediment samples collected at 23 sites in 2001 were analyzed for 24 trace elements. Arsenic, lead, and zinc were the only trace elements detected in concentrations that exceed probable effect levels for the protection of aquatic life. The background concentration for arsenic in Noyes Slough is naturally elevated because of significant concentrations of arsenic in local bedrock and ground water. Sources of the zinc and lead contamination are uncertain, however both lead and zinc are common urban contaminants. Streambed-sediment samples from 12 sites in 2002 were analyzed for organochlorine pesticides, polychlorinated biphenyls (PCBs), and semivolatile organic compounds (SVOCs). The concentration of bis(2-ethylhexyl)phthalate of 2,600 micrograms per kilogram (?g/kg) for one sample from the site above Aurora Drive approached the aquatic-life criterion of 2,650 ?g/kg. Low concentrations of p-cresol, chrysene, and fluoranthene were detected in most of the sediment samples. The presence of these compounds in Noyes Slough sediment was expected because cresols are emitted to the atmosphere in the exhaust from motor vehicles and chrysene and fluoranthene are formed during the incomplete burning of coal, oil, gas, wood, garbage, or other organic substances. Low-level concentrations of DDT or its degradation products DDD and DDE were detected in all samples collected during 2002. However, total DDT (DDT+DDD+DDE) concentrations are less than the effects range median aquatic-life criterion of 46.1 ?g/kg. In general, total DDT concentrations were less than 10 ?g/kg, except for samples from two sites that have estimated concentrations of about 14 and 20 ?g/kg.

Water-Resources Investigations Report↗

Mines and prospects of the Butte 1° x 2° Quadrangle, Montana

The Butte quadrangle, in the Northern Rocky Mountains of southwestern Montana, has had a long, productive, and colorful mining history. Butte, the city from which the quadrangle takes its name, is located in the most famous mining district of the quadrangle. This district, the Butte or Summit Valley district, has been described as the "richest hill on earth" and is one of the richest and most productive mining districts of the world. The quantity of metals produced from this district alone are far greater than the combined total of all commodities from all other mining districts of the quadrangle. However, many districts other than Butte have had significant production as compared to other mining districts of the Northern Rocky Mountains. The dollar value of production from the Butte district is more than $6 billion (Miller, 1973) and that of the combined total of production from the other districts in the quadrangle is more than $400 million. These values are based on actual metal prices at the time of production. The totals would be many times larger if converted to present day commodity prices. Mineral occurrence data for a total of 1111 mines, prospects, and mineral occurrences have been compiled for the Butte quadrangle. These mineralized sites are found throughout the quadrangle but most are concentrated in the major mining districts; 78 percent are clustered in 46 established mining districts and the remaining 22 percent are more widely scattered in 24 geographic areas (fig. 1). Only small areas of the quadrangle lack significant mines, prospects, or mineral occurrences. The locations of mines and prospects are shown on maps (pl. 1 and 2) and a brief description of each site is given in a table arranged by mining district or geographic area (table 1) (all tables are at end of report). This table gives a brief description of each district or area and details of each site within the district or area including site number, name and alternate name(s), location by latitude and longitude, commodities present, description of the site, and sources of data. Data for this report come from the U.S. Geological Survey Mineral Resource Data System (MRDS; this was formerly known as the Computerized Resource Information Bank (CRIB)), from many published and unpublished sources, and from geologic field work. The Butte quadrangle is in southwestern Montana and is bounded by latitudes 46° and 47° N. and longitudes 112° and 114° W. The city of Butte is near the southern edge and in the southeastern corner of the quadrangle. Helena, the state capital of Montana, is located on the eastern edge and Missoula is located near the northwestern corner of the quadrangle. Most of the area of the quadrangle is in Granite, Powell, Lewis and Clark, and Jefferson Counties and the remaining area includes parts of Missoula, Ravalli, Deer Lodge, and Silver Bow Counties. The quadrangle includes a number of major and minor mountain ranges separated by intermontane valleys. The continental divide trends nearly north-south through the eastern part of the quadrangle to a point near Butte, then trends generally east-west near the southern boundary of the quadrangle, west of Butte. East of the divide the drainages are tributary to the Missouri River and west of the divide the drainages are tributary to the Clark Fork, which heads in the vicinity of Butte. The geology of the Butte quadrangle is very complex. Sedimentary and igneous rocks range in age from Proterozoic to Tertiary. Most of the pre-Tertiary sedimentary rocks are structurally complex due to widespread faulting and folding. Due to thrust faulting, complete sequences of these sedimentary units are not generally present in the quadrangle and the thicknesses and lithologies are variable from one thrust plate to another. The oldest rocks in the quadrangle are sedimentary rocks of the Belt Supergroup of Middle Proterozoic age. They form very thick sequences, are exposed over a large percentage of the area of the quadrangle, and include formations of the lower, middle, and upper parts of the Belt. Individual formations are as much as 13,000 ft thick (C. A. Wallace, unpub. data) and the maximum thickness of the Belt Supergroup in the quadrangle may be similar to that of the entire sequence near Alberton, Montana, to the northwest of the Butte quadrangle where it exceeds 67,000 ft (Harrison, 1972). In many areas of the quadrangle these Precambrian rocks are overlain by thin to moderately thick sequences of Cambrian to Permian sedimentary rocks. The maximum thickness of the Paleozoic section is about 8,000 ft (C. A. Wallace, unpub. data). A relatively thick sequence of Mesozoic sedimentary rocks, predominantly Cretaceous in age, which is found mostly in the central part of the quadrangle, overlies the Paleozoic rocks. If complete, the Mesozoic sequence would total about 28,000 ft (C. A. Wallace, unpub. data). The Butte quadrangle is located in a structurally complex region. Most of the Butte quadrangle is in the southern part of the Montana Disturbed Belt, a tectonic belt in the Northern Rocky Mountains characterized by northwest-trending faults and intense deformation. An element of the Disturbed Belt, called the Sapphire Thrust System occupies most of the western two-thirds of the quadrangle. Sedimentary rocks of Cretaceous and older ages in the Sapphire Thrust System have been complexly folded and faulted. Plutonic rocks, which intrude the sedimentary units, and volcanic rocks of Cretaceous and Tertiary ages are widespread in the quadrangle. Most of these are post-thrusting but some may be pre- or syn-tectonic and involved in the thrusting and folding. Most of the mineral wealth in the quadrangle, in the form of hydrothermal ore deposits, is genetically related to Cretaceous granitic plutonism. Igneous activity decreased but continued into Tertiary time, at least until the Oligocene. In the Butte quadrangle the Cenozoic Era was important for normal faulting, volcanism, sedimentation, glaciation, and the formation of many important mineral deposits. Many normal faults were especially active during the Miocene and Pliocene and some were active into the Quaternary. Volcanic rocks of Eocene and Oligocene age cover large areas and are genetically related to several important mining districts. During Cenozoic time, thick accumulations of Tertiary basin-fill sediments, Pleistocene glacial till and outwash, and Holocene alluvium and colluvium were deposited. The Cenozoic was important for the formation of placer deposits valuable mainly for gold but some have produced important quantities of sapphires and tungsten. This map is part of a folio of maps of the Butte 1° x 2°quadrangle, Montana, prepared under the Conterminous United States Mineral Assessment Program (CUSMAP). Other maps to be published as part of this folio are a geologic map, geochemical maps, geophysical maps, maps of linear features and limonitic alteration interpreted from satellite and airborne radar data, and mineral resource assessment maps.

Montana↗

Barcodes are a useful tool for labeling and tracking ecological samples

Barcodes are used to label and track just about everything these days. Look around your office, in your medicine cabinet, at the package you just received in the mail, or on the shelves of any shop in town, and you will immediately grasp the ubiquity of their use. Interestingly, railroads and supermarkets were the early pioneers of barcode development: the former needing a way to track railway car location and ownership on a national scale, the latter needing a way to track a diverse array of products and to decrease checkout times (Nelson 1997). Barcodes first came to use in the sciences via the field of medicine, and the medical literature contains hundreds of publications describing how this technology has reduced errors in patient specimen identification and handling, where error mitigation is crucial. In short, barcodes have been adopted by many industries, and in many fields they are now synonymous with asset tracking. In spite of their potential to efficiently organize “assets” (i.e., samples) and minimize human error, the use of barcodes has yet to gain widespread application in ecology. In an age where students take notes on laptops instead of paper, and where “text messaging” involves a smartphone rather than a ball‐point pen, why do otherwise tech‐savvy ecologists persist in hand‐labeling samples? Why do we repeatedly transcribe long and unique identifiers at each step in the process of sample analysis, thereby wasting time and creating opportunities for transcription errors and data loss? Why are most sample storage areas only successfully navigable by the lab manager who personally shelved the samples? In the case of our large ecology lab—and, we suspect, in many others as well—the answer to these questions was perpetually, “bar‐coding won't be worth the trouble.” Recently, however, we realized this was no longer a sufficient answer when we started a new research project that involved collecting an additional thousands of samples each year; we decided to embrace the tangible benefits of an electronic labeling system, and implemented barcoding in our lab. To be clear, the use of barcoding in ecology is not completely novel, and there have been early adopters of this technology. For example, the Cedar Creek Long Term Ecological Research (LTER) site has been using barcodes since at least the mid‐1990s to track the large number of samples collected in their long‐term experimental grasslands (T. A. Kennedy, personal observation ). Overall, however, Cedar Creek is an outlier: in informal e‐mail surveys of LTER sites, only two of eight respondents used barcodes for sample identification or tracking, and even then their use was generally limited to certain samples or certain stages of sample analysis. Our objective in this article is to use our lab as a case study to highlight the potential of barcodes to simplify numerous aspects of sample collection and processing.

Arizona↗

Sedimentation and occurrence and trends of selected nutrients, other chemical constituents, and cyanobacteria in bottom sediment, Clinton Lake, northeast Kansas, 1977-2009

A combination of available bathymetric-survey information and bottom-sediment coring was used to investigate sedimentation and the occurrence of selected nutrients (total nitrogen and total phosphorus), organic and total carbon, 25 trace elements, cyanobacterial akinetes, and the radionuclide cesium-137 in the bottom sediment of Clinton Lake, northeast Kansas. The total estimated volume and mass of bottom sediment deposited from 1977 through 2009 in the conservation (multi-purpose) pool of the reservoir was 438 million cubic feet and 18 billion pounds, respectively. The estimated sediment volume occupied about 8 percent of the conservation-pool, water-storage capacity of the reservoir. Sedimentation in the conservation pool has occurred about 70 percent faster than originally projected at the time the reservoir was completed. Water-storage capacity in the conservation pool has been lost to sedimentation at a rate of about 0.25 percent annually. Mean annual net sediment deposition since 1977 in the conservation pool of the reservoir was estimated to be 563 million pounds per year. Mean annual net sediment yield from the Clinton Lake Basin was estimated to be 1.5 million pounds per square mile per year. Typically, the bottom sediment sampled in Clinton Lake was at least 99 percent silt and clay. The mean annual net loads of total nitrogen and total phosphorus deposited in the bottom sediment of Clinton Lake were estimated to be 1.29 million pounds per year and 556,000 pounds per year, respectively. The estimated mean annual net yields of total nitrogen and total phosphorus from the Clinton Lake Basin were 3,510 pounds per square mile per year and 1,510 pounds per square mile per year, respectively. Throughout the history of Clinton Lake, total nitrogen concentrations in the deposited sediment generally were uniform and indicated consistent inputs to the reservoir over time. Likewise, total phosphorus concentrations in the deposited sediment generally were uniform. Although, for two of three coring sites, a possible positive trend in phosphorus deposition was indicated. The Wakarusa River possibly was a larger contributor of nitrogen and phosphorus to Clinton Lake than was Rock Creek. As a principal limiting factor for primary production in most freshwater environments, phosphorus is of particular importance because increased inputs can contribute to accelerated reservoir eutrophication and the production of algal toxins and taste-and-odor compounds. Trace-element concentrations in the bottom sediment of Clinton Lake generally were uniform over time. As is typical for eastern Kansas reservoirs, arsenic, chromium, and nickel concentrations typically exceeded the threshold-effects guidelines, which represent the concentrations above which toxic biological effects occasionally occur. Zinc concentrations frequently exceeded the threshold-effects guideline. Trace-element concentrations did not exceed the probable-effects guidelines (available for eight trace elements), which represent the concentrations above which toxic biological effects usually or frequently occur. Cyanobacterial akinetes (cyanobacteria resting stage) in the bottom sediment of Clinton Lake, combined with historical water-quality data on chlorophyll-a and total phosphorus concentrations, indicated that the reservoir likely has been eutrophic throughout most of its history. A statistically significant increase in cyanobacterial akinetes in the bottom sediment indicated that Clinton Lake may have become more eutrophic over the life of the reservoir. The increase in cyanobacterial akinetes may, in part, be related to a possible increase in total phosphorus concentrations.

Scientific Investigations Report↗

Using Landsat and MODIS satellite collections to examine extent, timing, and potential impacts of surface water inundation in California croplands☆

The state of California, United States of America produces many crop products that are both utilized domestically and exported throughout the world. With nearly 39,000 km 2 of croplands, monitoring unintentional and intentional surface water inundation is important for water resource management and flood hazard readiness. We examine inundation dynamics in California croplands from 2003 to 2020 by intersecting monthly surface water maps (n = 216 months) derived using two satellite remote sensing platforms (Landsat and Moderate Resolution Imaging Spectroradiometer [MODIS]) with a high-quality cropland map generated by the California Department of Water Resources. Surface water maps were produced using the Dynamic Surface Water Extent model, in which satellite image pixels are classified into different levels of detection confidence. Our analysis focused on calculating monthly and annual occurrence of “high confidence” water for each satellite collection across eight cropland types and 58 counties. Results indicate that 49.9% (MODIS) to 56.4% (Landsat) of croplands were inundated at least once during the 18-year timespan. Rice crops, due to their unique need of consistent surface water and dominance as a crop type in CA, had the highest proportion of and mean annual inundation area, while citrus crops had the lowest. Mean monthly inundation patterns in most croplands followed California's precipitation patterns with high inundation during the winter and spring rainy season. At the county level, croplands in the southern Central Valley typically had high occurrences of inundation in conjunction with large crop areas. Exposure and sensitivity of inundation for three crop types (citrus, deciduous, and vineyards) that are typically less associated with intentional inundation were geographically variable, but overall were generally highest in counties in the southern Central Valley, California's primary agricultural region. Flood and precipitation related crop insurance claims indicated that rice had the highest mean indemnity payout for any month with damages typically occurring in March and April. Insurance claims were also high in deciduous fruit and nut crops, which had peak damages in February. A comparison between inundation results and insurance claims suggests that the inundation mapped by our process coincides with claim activity. These data elucidate water inundation patterns across the state that can serve to inform farmers, insurers, decision makers, resource managers, and flood mitigation professionals.

California↗

The Hawaiian Volcano Observatory: A natural laboratory for studying basaltic volcanism

In the beginning of the 20th century, geologist Thomas A. Jaggar, Jr., argued that, to fully understand volcanic and associated hazards, the expeditionary mode of studying eruptions only after they occurred was inadequate. Instead, he fervently advocated the use of permanent observatories to record and measure volcanic phenomena—at and below the surface—before, during, and after eruptions to obtain the basic scientific information needed to protect people and property from volcanic hazards. With the crucial early help of American volcanologist Frank Alvord Perret and the Hawaiian business community, the Hawaiian Volcano Observatory (HVO) was established in 1912, and Jaggar’s vision became reality. From its inception, HVO’s mission has centered on several goals: (1) measuring and documenting the seismic, eruptive, and geodetic processes of active Hawaiian volcanoes (principally Kīlauea and Mauna Loa); (2) geological mapping and dating of deposits to reconstruct volcanic histories, understand island evolution, and determine eruptive frequencies and volcanic hazards; (3) systematically collecting eruptive products, including gases, for laboratory analysis; and (4) widely disseminating observatory-acquired data and analysis, reports, and hazard warnings to the global scientific community, emergency-management authorities, news media, and the public. The long-term focus on these goals by HVO scientists, in collaboration with investigators from many other organizations, continues to fulfill Jaggar’s career-long vision of reducing risks from volcanic and earthquake hazards across the globe. This chapter summarizes HVO’s history and some of the scientific achievements made possible by this permanent observatory over the past century as it grew from a small wooden structure with only a small staff and few instruments to a modern, well-staffed, world-class facility with state-of-the-art monitoring networks that constantly track volcanic and earthquake activity. The many successes of HVO, from improving basic knowledge about basaltic volcanism to providing hands-on experience and training for hundreds of scientists and students and serving as the testing ground for new instruments and technologies, stem directly from the acquisition, integration, and analysis of multiple datasets that span many decades of observations of frequent eruptive activity. HVO’s history of the compilation, interpretation, and communication of long-term volcano monitoring and eruption data (for instance, seismic, geodetic, and petrologic-geochemical data and detailed eruption chronologies) is perhaps unparalleled in the world community of volcano observatories. The discussion and conclusions drawn in this chapter, which emphasize developments since the 75th anniversary of HVO in 1987, are general and retrospective and are intended to provide context for the more detailed, topically focused chapters of this volume.

Hawaii↗

Irrigation-induced contamination of water, sediment, and biota in the western United States-synthesis of data from the National Irrigation Water Quality Program

In October 1985 the U.S. Department of the Interior (DOI), through the National Irrigation Water Quality Program (NIWQP), began a series of field investigations at 26 areas in the Western United States to determine whether irrigation drainage has had harmful effects on fish, wildlife, and humans or has reduced beneficial uses of water. In 1992 NIWQP initiated the Data Synthesis Project to evaluate data collected during the field investigations. Geologic, climatologic, and hydrologic data were evaluated and water, sediment, and biota from the 26 areas were analyzed to identify commonalities and dominant factors that result in irrigation-induced contamination of water and biota. Data collected for the 26 area investigations have been compiled and merged into a common data base. The structure of the data base is designed to enable assessment of relations between contaminant concentrations in water, sediment, and biota. The data base is available to the scientific community through the World Wide Web at URL http://www.usbr.gov/niwqp . Analysis of the data base for the Data Synthesis included use of summary statistics, factor analysis, and logistic regression. A Geographic Information System was used to store and analyze spatially oriented digital data such as land use, geology and evaporation rates. In the U.S. Department of the Interior (DOI) study areas, samples of water, bottom sediment, and biota were collected for trace-element and pesticide analysis. Contaminants most commonly associated with irrigation drainage were identified by comparing concentrations in water with established criteria. For surface water, the criteria used were typically chronic criteria for the protection of freshwater aquatic life. Because ground water can discharge to the surface where wildlife can be exposed to it, the criteria used for ground water were both the maximum contaminant levels (MCL's) for drinking water and the chronic criteria for the protection of freshwater aquatic life. Data collected by the NIWQP studies indicated that, in surface water, filtered and unfiltered samples had nearly the same concentrations of arsenic, boron, molybdenum, and selenium for concentrations greater than about 10 micrograms per liter. Therefore, in this concentration range, filtered concentrations can be directly compared to biological-effect levels developed for unfiltered samples. In the range of 1 to 10 micrograms per liter there may be a tendency for unfiltered arsenic concentrations to be greater than filtered concentrations. For selenium, however, the data suggest differences from equality in that range result from analytical imprecision and not a general tendency for unfiltered concentrations to be greater than filtered concentrations. This relation may not be true in lentic, nutrient-rich waters because in such settings algae can bioaccumulate large amounts of selenium and other trace elements. Selenium was the trace element in surface water that most commonly exceeded chronic criteria for the protection of freshwater aquatic life; more than 40 percent of the selenium concentrations in surface-water samples exceeded the U.S. Environmental Protection Agency (USEPA) aquatic-life chronic criterion (5 micrograms per liter). In 12 of the 26 areas at least 25 percent of the surface water-samples had selenium concentrations that either equaled or exceeded the chronic criterion (5 micrograms per liter). More than 28 percent of boron concentrations and almost 17 percent of the molybdenum concentrations exceeded the aquatic life criteria established by the State of California (550 and 19 micrograms per liter, respectively). In ground water, more than 22 percent of the arsenic concentrations and more than 35 percent of the selenium concentrations exceeded the MCL (10 and 50 micrograms per liter, respectively). Few samples of uranium in surface water exceeded a criterion for the protection of aquatic life (300 micrograms per liter), but 44 percent of the uranium concentrations in ground water exceeded the MCL (30 micrograms per liter). Molybdenum, selenium and uranium were the trace elements most commonly found in bottom-sediment samples that exceeded the upper limit of the 95th percentile expected range in soils of the Western United States. Selenium is the only trace element for which ecological sediment guidelines are used in this report. Selenium concentrations commonly exceeded the ecological sediment guideline of two micrograms per gram. DDT and its degradation products DDD and DDE were the most common pesticide residues found in surface water at concentrations exceeding criteria. However, almost all the samples exceeding the criteria were from a single study area, the Owyhee-Vale Reclamation Project areas in Oregon and Idaho. The organochlorine pesticide chlordane was detected in 30 percent of the bottom-sediment samples, and undegraded DDT was detected in 21 percent. DDT or its degradation products were detected in all 21 study areas where bottom-sediment samples were analyzed for organochlorine pesticides. A principal-components analysis indicated that elevated selenium concentrations in surface water are not associated with elevated boron, molybdenum, or arsenic concentrations. The occurrence of selenium is associated with sulfate and uranium. The association of boron and molybdenum with chloride suggests that evaporative processes control their concentrations. Arsenic is not associated with any other measured trace element and is associated negatively with selenium. This report focuses on selenium because it was the trace element most frequently found at concentrations exceeding criteria for the protection of aquatic life. Selenium concentrations in water are dynamic, and, at a given site, the selenium concentration can change by an order of magnitude during a year and from one year to another. In some areas, selenium contamination may not occur during normal or wet periods. However, during a drought, reduced water deliveries may result in selenium contamination by evaporative concentration. Marine sedimentary rocks, especially those of Late Cretaceous age, are likely to be seleniferous. Irrigation of soils derived from them can contribute large amounts of selenium to drainwater; shallow wells in and near irrigated areas contained hundreds to thousands of micrograms per liter of selenium. The median selenium concentration in surface-water samples from NIWQP sites associated with Upper Cretaceous marine sedimentary rocks is 7 micrograms per liter (range less than 1 to 8,300 micrograms per liter) and from sites not associated with such rocks is 0.4 micrograms per liter (range less than 1 to 390 micrograms per liter). Irrigation-induced selenium contamination has been observed only in arid or semiarid areas. In those NIWQP study areas having local geologic sources of selenium, typically more than 25 percent of the surface-water samples exceed the chronic criterion for selenium if the evaporation rate is 3.0 times greater than the annual precipitation. In terminal water bodies, selenium accumulates and is not flushed out. In both terminal and flow-through lakes and ponds, the median selenium concentrations in surface water for samples collected from June through August are nearly the same (1.0 and 0.8 micrograms per liter, respectively). However, the 75th-percentile selenium concentration for terminal water bodies (24 µg/L) is significantly higher than for flow-through systems (4 µg/L). Selenium concentrations in biota were compared with concentrations that have been demonstrated to have adverse effects on similar species (the effect level) or to have adverse effects on another species if consumed (the dietary effect level). Twenty-five percent of the plant samples had selenium concentrations exceeding the dietary effect level (3 micrograms per gram dry weight) whereas more than 57 percent of the invertebrate samples and 61 percent of the fish samples exceeded the dietary effect level. Of the more than 2,000 bird eggs collected, 44 percent had selenium concentrations exceeding 6 micrograms per gram, a threshold value for reduced hatchability. In 14 areas, selenium concentrations in eggs from some populations of birds exceeded 6 micrograms per gram. Selenium-caused deformities of bird embryos were found in four of the NIWQP study areas; however, most study areas were not systematically surveyed for such deformities. Eggs were sampled from 34 species of birds belonging to 10 orders. Nearly all the eggs collected come from aquatic species of birds, with American coots, mallards, and American avocets being the three species most frequently collected. Of the 34 species, at least one set of eggs from 16 species had a geometric-mean selenium concentration of at least 12.5 micrograms per gram, a high-risk threshold. All three species of grebes yielded at least one set of high risk eggs, as did four of five species of shorebirds and five of eleven species of waterfowl. Egg-set data were examined to determine if some feeding guilds are more at risk to selenium poisoning than others. Analysis of data for waterbird eggs from the study areas where the 75th percentile selenium concentration in surface water exceeded 5 µg/L suggests that herbivorous birds may bioaccumulate less selenium than insect- and fish-eating birds. For birds from these study areas, selenium concentrations for 39 percent of the egg sets from herbivorous birds fell in the normal range (less than 3 µg/g) while only 7 and 0 percent, respectively, of egg sets from insect- and fish-eating birds fall in the normal range. Although herbivorous birds may bioaccumulate less selenium, it does not appear that any waterbird feeding guilds are particularly well buffered from exposure to selenium contamination. Predictive tools were developed to aid managers in identifying specific land areas at risk for irrigation-induced selenium contamination. The tools range from identifying broad geographic regions where selenium contamination is likely, to assessing the probability that selenium concentrations in a specific stream or lake exceed the chronic criterion for selenium. A geographic information system was used to prepare a map that identifies land areas in the Western United States that are susceptible to selenium contamination if irrigated. On the basis of the 75th percentile, selenium concentration in surface water, 12 of the 26 NIWQP study areas were classified as contaminated, two as seleniferous, and 12 as uncontaminated. The map correctly identified both seleniferous areas and 10 of 12 selenium-contaminated areas as susceptible; 10 of 12 uncontaminated areas were correctly identified as not being susceptible. About 160,000 square miles are identified as being susceptible; of that area, about 4,100 square miles have been identified by satellite imagery as actively being irrigated. Principal-components analysis and pattern-recognition techniques indicate that major-ion chemistry of water samples alone can be used to identify selenium- and nonselenium-producing areas in the Western United States. Water samples composed of simple salts of sulfate typically have concentrations of selenium that exceed 3 µg/g, whereas samples composed of simple salts of chloride or carbonate typically have low selenium concentrations. Weathering of soils that contain reduced-sulfur minerals, such as pyrite, mobilizes sulfur and selenium because selenium commonly substitutes for sulfur in these minerals. In areas where the bedrock is composed of Upper Cretaceous marine sedimentary rocks, logistic regression of data from the NIWQP sites indicates that if the dissolved-solids concentration equals 1,000 milligrams per liter, the probability is about 69 percent that the selenium concentration will exceed 5 micrograms per liter, the U.S. Environmental Protection Agency chronic criterion. In areas where the bedrock is not composed of such rocks, the probability is only about 10 percent. The avian-egg data within the biotic data base were used to make a quantitative toxicological risk assessment. Of the 23 study areas where avian eggs were sampled, 14 areas yielded at least one egg containing 6 µg/g selenium, the threshold for embryotoxicity. However, only 6 of the study areas yielded eggs containing enough selenium to expect selenium-induced teratogenesis of duck embryos. Predicted probabilities of discovering embryo teratogenesis matched field observations in 13 of the 14 study areas reporting results of embryo assessments. Bird eggs were collected from 161 individual sampling sites and at 79 of those sites selenium concentrations in one or more eggs exceeded 6 µg/g. At the 79 sites where biological effects are expected on the basis of selenium concentrations in the eggs, the median rate was 3.9 percent of the hens losing at least one egg to selenium-induced embryotoxicity. This corresponds to about 1.2 percent selenium-induced egg inviability among otherwise viable eggs. Across all NIWQP study areas, the overall rate of hens projected to lose at least one egg to selenium-induced embryotoxicity is estimated to be 1.9 percent, which corresponds to about 0.3 percent selenium-induced egg inviability among otherwise viable eggs. After accounting for increased mortality of selenium poisoned-hatchlings due to other factors such as weather and predators, it was estimated that that increases of 0.3 and 1.2 percent in inviable eggs would cause approximately a 1.4 and 5.4 percent depression in nesting success. Regional surveys of nesting success among ducks revealed that duck populations commonly exist near their demographic break-even point. The vulnerable demographic condition of North American duck populations during the mid-1960's to mid-1980's was primarily due to noncontaminant factors, such as poor-quality nesting habitat and dry climatic cycles. Under such conditions, rates of 1.4- to 5.4-percent depression in nesting success caused by exposure to selenium from irrigation projects can be crucial for avian populations already close to their demographic break-even point. Even the worst-case levels of contaminant effects, however, could be tolerated by populations of ducks existing just modestly above demographic break-even points. This suggests the biotic risk to ducks could be addressed by reducing irrigation-induced water pollution but more effectively by restoring high-quality (more predator-safe) nesting habitat. An analysis at the nesting-site level was made of the relation between selenium content of water and bird eggs. Eggs from 93 bird populations were collected from nesting sites where the water sample collected during April-July contained less than 5 µg/L selenium. The average selenium concentration in egg sets was embryotoxic in 19 of the 93 populations. Of the populations collected at sites where the selenium in the water was less than 1 microgram per liter, only four of 54 populations contained embryotoxic concentrations. Eggs from 65 populations of birds were collected from nesting sites where selenium concentrations in water samples collected during April-July equaled or exceeded 5 µg/L, and 55 of those 65 populations contained embryotoxic concentrations of selenium in the eggs. An analysis at the study-area level was made of the relation between selenium contamination of water and selenium contamination of the food chain and egg loss due to selenium poisoning. Most food organisms, particularly aquatic invertebrates and fish, contained potentially harmful amounts of selenium in study areas where selenium concentrations in more than 25 percent of the water samples exceed 5 µg/L. The analysis also indicates that some hens are predicted to lose eggs to selenium poisoning in all study areas where selenium concentrations in more than 25 percent of the water samples exceed 5 µg/L. These results suggest that areas where selenium contamination of the food chain and loss of eggs to selenium poisoning is occurring may be identified using the same methods developed to identify areas where selenium contamination of water is likely to occur.

western United States↗

Geologic and hydrogeologic characteristics of the White River Formation, Lance Formation, and Fox Hills Sandstone, northern greater Denver Basin, southeastern Laramie County, Wyoming

In cooperation with the Wyoming State Engineer’s Office, the U.S. Geological Survey studied the geologic and hydrogeologic characteristics of Cenozoic and Upper Cretaceous strata at a location in southeastern Laramie County within the Wyoming part of the Cheyenne Basin, the northern subbasin of the greater Denver Basin. The study aimed to improve understanding of the aquifers/aquifer systems in these strata, motivated in part by declining groundwater levels and interest in exploring future groundwater supplies. Based on detailed geologic characterization using information obtained by drilling and coring a 960-foot-(ft) deep exploratory borehole, and comparisons with previously published descriptions, identified Cenozoic lithostratigraphic units included 40 ft of Quaternary older alluvial fan deposits consisting of an unconsolidated mixture of sand and gravel with lesser quantities of silt and clay in varying proportions and the underlying 407.3-ft-thick White River Formation of late Eocene-Oligocene age consisting largely of mudrocks with sparse thin beds of sandstone, muddy gravel, and conglomeratic mudrocks. Identified Upper Cretaceous lithostratigraphic units included the 351.6-ft-thick Lance Formation, consisting of terrestrial sedimentary rocks including mudrocks (muddy shale and silty and sandy shale, siltstone, claystone, and mudstone) interbedded with much smaller quantities of very fine- to medium-grained muddy and silty sandstone and coal; the 79.6-ft-thick Fox Hills Sandstone, consisting of a transitional marine sequence of muddy or silty sandstone present in five individual beds; and 86.7 ft of the upper transition member of the Pierre Shale, consisting largely of marine sedimentary rocks such as muddy shale. Beds of the upper and lower Fox Hills Sandstone were separated by tongues of the Lance Formation and upper transition member of the Pierre Shale, respectively. The White River hydrogeologic unit, consisting of the entire White River Formation or Group at the study site, did not contain any substantial secondary permeability features in the mudrocks that composed almost all the unit. A monitoring well (BR–1) was completed in the White River aquifer with the well screen open to the only coarse-grained unit (muddy sandstone) that had sufficient thickness and permeability to be considered as an aquifer. Sampling of the well for a broad suite of constituents indicated groundwater generally was of excellent quality except dissolved arsenic was detected at a concentration greater than the U.S. Environmental Protection Agency (EPA) Maximum Contaminant Level, and dissolved sodium was measured at a concentration greater than several EPA Drinking Water Advisory Levels (DWAs) for the constituent. Well development, well purging for groundwater sampling, and calculated aquifer properties indicated the sandstone aquifer screened by monitoring well BR–1 was not very productive. Analysis of the well water-level responses in BR–1 to atmospheric loading and Earth tides indicated the responses were consistent with a confined-aquifer response with wellbore-storage effects. Hydraulic properties estimated based on these responses yielded values of hydraulic conductivity ( K , 0.057 foot per day [ft/d]), specific storage ( Ss , 1.6×10 −6 per foot [ft −1 ]) and porosity ( n , 0.43). Water levels filtered to remove the effects of atmospheric loading and Earth tides indicated an upward trend (+1.13 foot per year [ft/yr]) during the period analyzed, September 5, 2014, to September 30, 2017. Lithologic characteristics of the Lance hydrogeologic unit, consisting of the entire Lance Formation at the study site, indicated a potential aquifer in a “sandy” interval in the upper part of the unit. Most of the Lance hydrogeologic unit below the “sandy” interval consisted of various low-permeability lithologies unlikely to yield substantial quantities of water. This lower part of the hydrogeologic unit likely functions as a confining unit separating the underlying Lance-Fox Hills aquifer. A geologic cross section constructed for this study indicated fine-grained sediments composed most of the Lance Formation/hydrogeologic unit not only at the study location, but also throughout southern Laramie County along the line of section and throughout the Wyoming and Colorado parts of the Cheyenne Basin. A monitoring well (LN–1) completed in a sandstone bed in the “sandy” interval of the Lance hydrogeologic unit produced a mean of about 23 gallons per minute (gal/min) during well development, indicating sandstone beds can form moderately productive confined subaquifers in this part of the hydrogeologic unit. Analysis of the well water-level responses in well LN–1 to atmospheric loading and Earth tides indicated the responses were consistent with a confined-aquifer response. Hydraulic properties estimated based on these responses yielded values for a lower bounding K of 0.60 ft/d, Ss of 1.6×10 −6 ft −1 , and n of 0.38. Water levels filtered to remove the effects of atmospheric loading and Earth tides indicated a downward trend (−0.86 ft/yr) during the period analyzed (November 8, 2014, to September 30, 2017). Analyses for a broad suite of constituents in samples from well LN–1 indicated groundwater quality generally was excellent, although dissolved sodium was measured at a concentration greater than two EPA DWA levels for the constituent. Because of the absence of any overlying or intertonguing sandstone beds belonging to the lower/basal part of the Lance Formation, the Lance-Fox Hills aquifer at the study site consisted only of the five sandstone beds of the Fox Hills Sandstone. The cross section constructed for this study illustrated how the Fox Hills Sandstone, and thus, most of the Lance-Fox Hills aquifer, consists of a series of sandstone bodies that overlap (shingle) upward to the east across southern Laramie County. These bodies collectively form a fairly continuous body of sandstone, thus potentially forming an areally extensive aquifer across southern Laramie County, and by extension, throughout most of the formation’s extent in the Wyoming part of the Cheyenne Basin, as is the case in the Colorado part of the basin. A monitoring well (FH–1) completed in part of the thickest sandstone bed of the Lance-Fox Hills aquifer was moderately to highly productive and easily produced 25 to 30 gal/min after development. Substantially larger water production rates likely could be obtained by penetrating the full thickness of this bed and by completing a well open to the other overlying and underlying sandstone beds of the aquifer. Analysis of the water-level responses in well FH–1 to atmospheric loading and Earth tides indicated the responses were consistent with a confined-aquifer response. Hydraulic properties computed based on these responses yielded values for a lower bounding estimate for K of 0.26 ft/d, for Ss of 1.0×10 −6 ft −1 , and for n of 0.41. Water levels filtered to remove the effects of atmospheric loading and Earth tides indicated a downward trend (−1.74 ft/yr) during the period analyzed, December 19, 2014, to September 30, 2017. Sampling of monitoring well FH–1 and two production wells completed in the Fox Hills Sandstone in other parts of Laramie County indicated groundwater quality generally is excellent, although pH exceeded a recommended EPA aesthetic drinking-water standard (Secondary Maximum Contaminant Level) in two of three sampled wells, total dissolved solids concentrations exceeded the Secondary Maximum Contaminant Level in one of the two sampled production wells, and dissolved sodium was measured in all three sampled wells at a concentration greater than two EPA DWA levels for the constituent. The Wyoming Class II agricultural (irrigation) sodium adsorption ratio standard of 8 was exceeded in all three sampled wells, indicating these waters are not suitable for irrigation use. Computed vertical hydraulic gradients indicated a strong potential for downward flow throughout the groundwater system at the study site, including from the low-yielding aquifer in the upper White River Formation/hydrogeologic unit (monitoring well BR–1) to the sandstone subaquifer in the Lance Formation/hydrogeologic unit (monitoring well LN–1), and from the Lance subaquifer (monitoring well LN–1) to the sandstone bed/aquifer that composes much of the Lance-Fox Hills aquifer thickness at the study site (monitoring well FH–1). However, large hydraulic-head differences between wells indicated high resistance to vertical flow attributable to the low vertical hydraulic conductivity of intervening strata, which consisted almost entirely of low-permeability mudrocks. The confined nature of the sandstone aquifers monitored by the various wells coupled with dissimilarities between groundwater-level fluctuations and trends in groundwater levels indicated downward flow through the intervening strata (primarily mudrocks in the various lithostratigraphic/hydrogeologic units) between the examined sets of wells likely was small.

Wyoming↗

Annual Report for 2003 Wild Horse Research and Field Activities

As stated in the Wild Horse Fertility Control Field Trial Plan, the Bureau of Land Management (BLM) has an immediate need for a safe, effective contraceptive agent to assist in the management of the large number of wild horses on western rangelands. The BLM and the U.S. Geological Survey-Biological Resources Discipline (USGS/BRD) are testing the immunocontraceptive agent Porcine Zonae Pellucida (PZP) in field trials with three free-roaming herds of western wild horses. Extensive research has already been conducted on the safety, efficacy, and duration of PZP applications in both domestic and feral horses on eastern barrier islands and in some select trials I with wild horses in Nevada managed by the BLM. However, significant questions remain concerning the effects of I PZP application at the population level in the wild, as well as effects at the individual level on behavior, social structure, and harem dynamics of free-ranging animals. These questions are best answered with field trials on wild horse herds under a tight research protocol. The ultimate goal is to provide the BLM with the protocols and information necessary to begin using fertility control to regulate population growth rates in wild horse herds on a broader scale. Fertility control is intended to assist the conventional capture, removal, and adoption process as a I means of controlling excess numbers of wild horses and burros, and to greatly reduce the adoption costs and numbers of animals handled. Fertility control is not intended to totally replace the removal and adoption process. The USGSIBRD began assisting the BLM with field trials of immunocontraceptive fertility control of wild horses in early 2001. The first PZP treatments were applied during gathers at the Pryor Mountain Wild Horse Range in September 2001, and the Little Book Cliffs Wild Horse Range, Colorado, in July 2002. At those gathers, 5 horses were treated in the Pryor Mountain WHR, and 23 were treated in the Little Book Cliffs WHR with PZP. These initial treatments were followed by booster injections in 2002. The second injection is required in order to raise, and I maintain, the titer levels of mares high enough to be considered contracepted. By the end of 2002, 13 horses on the Pryor Mountain WHR had received both injections, as had 11 horses in the Little Book Cliffs WHR. In 2003, intensive research efforts were carried out by the USGSIBRD at three field locations; Pryor Mountain WHR, Little I Book Cliffs WHR, and McCullough Peaks Wild Horse Management Area. The work at these sites during this I calendar year included treatment of wild horse mares with PZP in the Pryor herd and Little Book Cliffs herd, development and implementation of behavioral research to investigate potential affects of PZP treatment, continued tracking of demography and foal production in all three herds, and early phases of investigating aerial population estimation survey techniques. Detailed descriptions of these research topics can be found in the Wild Horse and Burro Management Strategic Research Plan and the Wild Horse Fertility Control Field Trial Plan. Field work in 2003 was conducted by USGSIBRD and BLM staff with the assistance of many dedicated individuals. See I Acknowledgments for more details. This report is meant to highlight the activities of the 2003 field season, as well as to provide a general overview of the data collected. More in-depth data analysis will be conducted following the conclusion of each I phase of the research project, and in many cases will not be possible until several seasons of data are collected.

Open-File Report↗

Vulnerability of ground water to contamination, northern Bexar County, Texas

The Trinity aquifer, composed of Lower Cretaceous carbonate rocks, largely controls the ground-water hydrology in the study area of northern Bexar County, Texas. Discharge from the Trinity aquifer recharges the downgradient, hydraulically connected Edwards aquifer one of the most permeable and productive aquifers in the Nation and the sole source of water for more than a million people in south-central Texas. The unconfined, karstic outcrop of the Edwards aquifer makes it particularly vulnerable to contamination resulting from urbanization that is spreading rapidly northward across an "environmentally sensitive" recharge zone of the Edwards aquifer and its upgradient "catchment area," composed mostly of the less permeable Trinity aquifer. A better understanding of the Trinity aquifer is needed to evaluate water-management decisions affecting the quality of water in both the Trinity and Edwards aquifers. A study was made, therefore, in cooperation with the San Antonio Water System to assess northern Bexar County's vulnerability to ground-water contamination. The vulnerability of ground water to contamination in this area varies with the effects of five categories of natural features (hydrogeologic units, faults, caves and (or) sinkholes, slopes, and soils) that occur on the outcrop and in the shallow subcrop of the Glen Rose Limestone. Where faults affect the rates of recharge or discharge or the patterns of ground-water flow in the Glen Rose Limestone, they likewise affect the risk of water-quality degradation. Caves and sinkholes generally increase the vulnerability of ground water to contamination, especially where their occurrences are concentrated. The slope of land surface can affect the vulnerability of ground water by controlling where and how long a potential contaminant remains on the surface. Disregarding the exception of steep slopes which are assumed to have no soil cover the greater the slope, the less the risk of ground-water contamination. Because most soils in the study area are uniformly thin, they have only minimal effect on the vulnerability of ground water to contamination. The results of hydrogeologic mapping during the present study divide the outcrop of the Glen Rose Limestone into five mappable intervals, labeled (youngest to oldest) A through E. Of these intervals, only the middle (C) and the lowermost (E) generally provide appreciable permeability. The vulnerability assessment provided herein was determined by combining the presumed effects of selected natural features (with individual vulnerability ratings ranging from 0 through 35) using a grid-based, multilayer system of digital datasets and geographic information system analysis. The resulting vulnerability map comprises composite vulnerability ratings that range from 26 through 104. The relatively less vulnerable areas those containing no faults, sinkholes, or caves occupy about 92 percent of the study area. The most vulnerable areas are those containing both a fault and one or more caves. The distribution of the most vulnerable areas which trend from southwest to northeast, roughly parallel to the Balcones fault zone occur mainly where faults intersect caves.

Texas↗

Salinas Valley integrated hydrologic and reservoir operations models, Monterey and San Luis Obispo Counties, California

The area surrounding the Salinas Valley groundwater basin in Monterey and San Luis Obispo Counties of California is a highly productive agricultural area, contributes substantially to the local economy, and provides a substantial portion of vegetables and other agricultural commodities to the Nation. This region of California provides about half of the Nation’s lettuce, celery, broccoli, and spinach each year. Thus, this agricultural area provides substantial volumes of agricultural products not just for California but for the United States. Changes in population and increased agricultural development, which includes a shift toward more water-intensive crops, and climate variability, have put increasing demand on both surface-water and groundwater resources in the valley. This situation has resulted in water management challenges in the Salinas Valley that generally relate to the distribution of the water supply throughout the basin. Where and when the water is present in the surface and subsurface does not coincide with where and when the water is needed. Historically, to deal with the distribution issue, water has been used conjunctively in the valley. Conjunctive use is a water management strategy that coordinates surface-water and groundwater use to maximize water availability. Groundwater is used throughout the Salinas Valley to meet water demands when surface-water supplies are insufficient. The availability of surface water is constrained by climate. Precipitation and streamflow vary seasonally and year to year. Although there are two reservoirs in the Salinas Valley to capture and store water during wet periods, the only conveyance of reservoir water to coastal agricultural areas is the Salinas River. Increasing demand for groundwater and surface-water resources throughout the Salinas Valley has resulted in undesirable effects from unsustainable water use, such as surface-water depletion, groundwater-level declines, storage depletion in the principal aquifers, and seawater intrusion. To address these escalating issues, local communities, water management agencies, and groundwater sustainability agencies are evaluating how to sustainably manage both their surface-water and groundwater resources. To meet water demands and reduce the undesirable effects of unsustainable water use, continued conjunctive management of surface water and groundwater would ideally incorporate strategies to deal with increases in demand and climate variability. To evaluate the challenging water management issues in the Salinas Valley, the U.S. Geological Survey, Monterey County Water Resources Agency, and the Salinas Valley Basin Groundwater Sustainability Agency developed a comprehensive suite of models that represent the Salinas Valley hydrogeologic system called the Salinas Valley System Model. The geologic framework is known as the Salinas Valley Geologic Framework and was developed to characterize the subsurface using various topographic and geologic data sources, including information on hydrogeologic units, their surfaces and extents, geologic structures, lithology, and elevations from borehole data and cross sections, as well as details on faults and existing models. The surface-water model is called the Salinas Valley Watershed Model and simulates the Salinas River watershed. Monthly surface-water inflows into the integrated hydrologic model domain were simulated using the Salinas Valley Watershed Model. The historical model uses historical climate data, water and land use data, and reservoir releases to simulate agricultural operations, including landscape water demands, diversions, and reclaimed wastewater. The operational model adds an embedded reservoir operations framework to the simulation of the historical model that allows specified operational rules to simulate reservoir releases and changes in reservoir storage. The operational model assumes current reservoir operations and constant land use, which differs from historical conditions. Thus, the operational model is a hypothetical baseline model that can be used by local water managers to evaluate and quantify potential benefits of water supply projects. Together, the geologic framework, watershed, historical, and operational models form a tool that can be used to simulate irrigated agriculture and associated reservoir operations of the integrated hydrologic system of the Salinas Valley.

California↗

Global multi-resolution terrain elevation data 2010 (GMTED2010)

In 1996, the U.S. Geological Survey (USGS) developed a global topographic elevation model designated as GTOPO30 at a horizontal resolution of 30 arc-seconds for the entire Earth. Because no single source of topographic information covered the entire land surface, GTOPO30 was derived from eight raster and vector sources that included a substantial amount of U.S. Defense Mapping Agency data. The quality of the elevation data in GTOPO30 varies widely; there are no spatially-referenced metadata, and the major topographic features such as ridgelines and valleys are not well represented. Despite its coarse resolution and limited attributes, GTOPO30 has been widely used for a variety of hydrological, climatological, and geomorphological applications as well as military applications, where a regional, continental, or global scale topographic model is required. These applications have ranged from delineating drainage networks and watersheds to using digital elevation data for the extraction of topographic structure and three-dimensional (3D) visualization exercises (Jenson and Domingue, 1988; Verdin and Greenlee, 1996; Lehner and others, 2008). Many of the fundamental geophysical processes active at the Earth's surface are controlled or strongly influenced by topography, thus the critical need for high-quality terrain data (Gesch, 1994). U.S. Department of Defense requirements for mission planning, geographic registration of remotely sensed imagery, terrain visualization, and map production are similarly dependent on global topographic data. Since the time GTOPO30 was completed, the availability of higher-quality elevation data over large geographic areas has improved markedly. New data sources include global Digital Terrain Elevation Data (DTEDRegistered) from the Shuttle Radar Topography Mission (SRTM), Canadian elevation data, and data from the Ice, Cloud, and land Elevation Satellite (ICESat). Given the widespread use of GTOPO30 and the equivalent 30-arc-second DTEDRegistered level 0, the USGS and the National Geospatial-Intelligence Agency (NGA) have collaborated to produce an enhanced replacement for GTOPO30, the Global Land One-km Base Elevation (GLOBE) model and other comparable 30-arc-second-resolution global models, using the best available data. The new model is called the Global Multi-resolution Terrain Elevation Data 2010, or GMTED2010 for short. This suite of products at three different resolutions (approximately 1,000, 500, and 250 meters) is designed to support many applications directly by providing users with generic products (for example, maximum, minimum, and median elevations) that have been derived directly from the raw input data that would not be available to the general user or would be very costly and time-consuming to produce for individual applications. The source of all the elevation data is captured in metadata for reference purposes. It is also hoped that as better data become available in the future, the GMTED2010 model will be updated.

Open-File Report↗

Processes affecting dissolved-oxygen concentrations in the lower reaches of Middle Fork and South Fork Beargrass Creek, Jefferson County, Kentucky

This report provides data on dissolved-oxygen (DO) concentrations and identifies the environmental processes that most affect DO concentrations during base-flow periods in the lower reaches of Middle Fork and South Fork Beargrass Creek in Jefferson County, Kentucky. These reaches are affected by inputs from combined-sewer overflows. Sections of the lower reaches of the two streams run through single-family residential areas and public parks that are used extensively by local residents during the summer. Recreational fishing and wading also are common in the Middle Fork reach. Continuous-record data collected during the summer and early fall (July-September 1996 on the Middle Fork and July-October 1995 on the South Fork) at three monitoring sites along each reach indicate generally decreasing DO concentrations in the downstream direction except for the South Fork Beargrass Creek at Winter Avenue site where channel modifications have resulted in higher velocities along with shallower depths during low-flow conditions. The channel modifications at this site increased the reaeration-rate coefficient (a measure of the capacity of the stream to absorb oxygen through the air-water interface), increased the potential for algae to attach to the rough concrete surface, and increased algal exposure to sunlight. Synoptic data available for selected constituent concentrations were used to calibrate and verify a computer model (U.S. Environmental Protection Agency QUAL2E model) capable of simulating processes that affect DO concentrations in streams. The results of the study indicate that streamflow, reaeration, and sediment-oxygen demand (SOD) are the factors that most affect net production and depletion of DO in the lower reaches of Middle Fork and South Fork Beargrass Creek. For the QUAL2E model, streamflow is used in the determination of depth, which in tum is used to estimate the consumption of oxygen by SOD. Streamflow also is used in the determination of the reaeration-rate coefficient. From the QUAL2E simulations, DO concentrations (in the mass balance) attributed to reaeration and SOD were at least an order of magnitude greater than any of the other factors that can affect DO concentrations. Large diurnal variability in DO concentrations resulted at the monitoring sites located at upstream and downstream ends of the Middle Fork and South Fork reaches, but as indicated in model simulation, the net effect of photosynthesis and respiration on DO concentration was small. Nitrogen, ammonia, and carbonaceous biochemical-oxygen demand were present at low concentrations in each of the study reaches; the model results indicate these constituents did not have a substantial effect on DO concentrations. Model simulations indicated that lowering the SOD rate by 50 percent would result in a substantial improvement in DO concentrations in the Middle Fork Beargrass Creek reach for extremely low base-flow conditions but would result in only limited improvement in DO concentrations in the South Fork Beargrass Creek reach. However, no simulations for extremely low base-flow conditions were conducted for the South Fork Beargrass Creek reach. More information on SOD is needed for stream reaches affected by periodic inputs of effluent. In such stream systems, the temporal and spatial variability of SOD needs to be better defined.

Kentucky↗

Volcanic hazards on the Island of Hawaii

Volcanic hazards on the Island of Hawaii have been determined to be chiefly products of eruptions: lava flows, falling fragments, gases, and particle-and-gas clouds. Falling fragments and particle-and-gas clouds can be substantial hazards to life, but they are relatively rare. Lava flows are the chief hazard to property; they are frequent and cover broad areas. Rupture, subsidence, earthquakes, and sea waves (tsunamis) caused by eruptions are minor hazards; those same events caused by large-scale crustal movements, however, are major hazards to both life and property. Volcanic hazards are greatest on Mauna Loa and Kilauea, and the risk is highest along the rift zones of those volcanoes. The hazards are progressively less severe on Hualalai, Mauna Kea, and Kohala volcanoes. Some risk from earthquakes extends across the entire island, and the risk from tsunamis is high all along the coast. The island has been divided into geographic zones of different relative risk for each volcanic hazard, and for all those hazards combined. Each zone is assigned a relative risk for that area as a whole; the degree of risk varies within the zones, however, and in some of them the risk decreases gradationally across the entire zone. Moreover, the risk in one zone may be locally as great or greater than that at some points in the zone of next higher overall risk. Nevertheless, the zones can be highly useful for land-use planning. Planning decisions to which the report is particularly applicable include the selection of kinds of structures and kinds of land use that are appropriate for the severity and types of hazards present. For example, construction of buildings that can resist a lava flow is generally not feasible, but it is both feasible and desirable to build structures that can resist falling rock fragments, earthquakes, and tsunamis in areas where risk from those hazards is relatively high. The report can also be used to select sites where overall risk is relatively low, to identify sites where either overall risk or risk from some specific hazard is relatively high, and to identify areas in which there is a threat to lives as well as to property. The report further can serve as a basis for warning persons about hazards in areas most likely to be affected by volcanic eruptions. Perhaps most important, however, the report provides basic information needed for zoning to control future land use.

Hawaii↗

Effects of land use, stream habitat, and water quality on biological communities of wadeable streams in the Illinois River Basin of Arkansas, 2011 and 2012

The Illinois River Basin includes an area of diverse land use in northwestern Arkansas. Land-use data collected in 2006 indicate that most of the land in the basin is agricultural. The agricultural land is used primarily for production of poultry and cattle. Eighteen sites were selected from the list of candidate sites based on drainage area, land use, presence or absence of an upstream wastewater-treatment plant, water quality, and other information gathered during the reconnaissance. An important consideration in the process was to select sites along gradients of forest to urban land use and forest to agricultural land use. Water-quality samples were collected for analysis of nutrients, and a multiparameter field meter was used to measure water temperature, specific conductance, pH, and dissolved oxygen. Streamflow was measured immediately following the water-quality sampling. Macroalgae coverage was estimated and periphyton, macroinvertebrate, and fish communities were sampled at each site. Stream habitat also was assessed. Many types of land-use, water-quality, and habitat factors affected one or more aspects of the biological communities. Several macroinvertebrate and fish metrics changed in response to changes in percent forest; sites that would be considered most disturbed, based on these metrics, are sites with the highest percentages of urban land use in their associated basins. The presence of large mats of macroalgae was one of the most noticeable biological characteristics in several streams within the Illinois River Basin. The highest macroalgae percent cover values were recorded at four sites downstream from wastewater-treatment plants. Macroalgae percent cover was strongly correlated only with bed substrate size, canopy closure, and specific conductance. Periphyton metrics were most often and most strongly correlated with riparian shading, specific conductance, substrate turbidity, percent agriculture, poultry house density, and unpaved road density; some of these factors were strongly correlated with percent forest, percent urban, or percent agriculture. Total biovolume of periphyton was not strongly correlated with any of the land use, habitat, or water-quality factors assessed in the present study. Although algal growth typically increases with higher nutrient concentrations and less shading, the standing crop of periphyton on rocks can be reduced by herbivorous macroinvertebrates and fish, which may explain why total biovolume in Ozark streams was not strongly affected by water-quality (or other habitat) factors. A macroinvertebrate index and several macroinvertebrate metrics were adversely affected by increasing urban and agricultural land use and associated environmental factors. Factors most commonly affecting the index and metrics included factors associated with water quality, stream geometry, sediment, land-use percentages, and road density. In general, the macroinvertebrate index was higher (indicative of least disturbance) at sites with greater percentages of forest in their basins, lower percentages of urban land in their basins, and lower paved road density. Upstream wastewater-treatment plants affected several metrics. For example, three of the five lowest macroinvertebrate index scores, two of the five lowest percent predator values, and two of the five highest percent gatherer-collector values were at sites downstream from wastewater-treatment plants. The Ozark Highlands fish index of biotic integrity and several fish metrics were adversely affected by increasing urban and agricultural land use and associated factors. Factors affecting these metrics included factors associated with nutrients, sediment, and shading. In general, the fish index of biotic integrity was higher at sites with higher percentages of forest in their basins, lower percentages of urban land in their basins, higher unpaved road density, and lower paved and total road density. Upstream wastewater-treatment plants seemed to affect some fish community metrics substantially but had little effect on other metrics. For example, three of the five lowest relative abundances of lithophilic spawner minus stonerollers and four of the five highest stoneroller abundances were at sites downstream from wastewater-treatment plants. Interpretations of the results of the study described in this report are limited by a number of factors. These factors individually and collectively add to uncertainty and variability in the responses to various environmental stresses. Notwithstanding the limiting factors, the biological responses of macroalgae cover and periphyton, macroinvertebrate, and fish metrics to environmental variables provide multiple lines of evidence that biological communities of these streams are affected by recent and ongoing land-use practices. For several biological metrics there appears to be a threshold of about 40 to 50 percent forest where values of these metrics change in magnitude. However, the four sites with more than 50 percent forest in their basins were the four sites sampled in late May–early June of 2012 (rather than July–August of 2011). The relative influence of season and forest percentage on the biological communities at these sites is unknown.

Arkansas↗

Synthesis of studies in the fall low-salinity zone of the San Francisco Estuary, September-December 2011

In fall 2011, a large-scale investigation (fall low-salinity habitat investigation) was implemented by the Bureau of Reclamation in cooperation with the Interagency Ecological Program to explore hypotheses about the ecological role of low-salinity habitat in the San Francisco Estuary—specifically, hypotheses about the importance of fall low-salinity habitat to the biology of delta smelt Hypomesus transpacificus , a species endemic to the San Francisco Estuary and listed as threatened or endangered under federal and state endangered species legislation. The Interagency Ecological Program is a consortium of 10 agencies that work together to develop a better understanding of the ecology of the Estuary and the effects of the State Water Project and Federal Central Valley Project operations on the physical, chemical, and biological conditions of the San Francisco Estuary. The fall low-salinity habitat investigation constitutes one of the actions stipulated in the Reasonable and Prudent Alternative issued with the 2008 Biological Opinion of the U.S. Fish and Wildlife Service, which called for adaptive management of fall Sacramento-San Joaquin Delta outflow following “wet” and “above normal” water years to alleviate jeopardy to delta smelt and adverse modification of delta smelt critical habitat. The basic hypothesis of the adaptive management of fall low-salinity habitat is that greater outflows move the low-salinity zone (salinity 1–6), an important component of delta smelt habitat, westward and that moving the low-salinity zone westward of its position in the fall of recent years will benefit delta smelt, although the specific mechanisms providing such benefit are uncertain. An adaptive management plan was prepared to guide implementation of the adaptive management of fall low-salinity habitat and to reduce uncertainty. This report has three major objectives: • To provide a summary of the results from the first year of coordinated fall low-salinity habitat studies and monitoring. • To provide a synthesis of the results of the fall low-salinity habitat studies and other ongoing research and monitoring, to determine if the available information supports the hypotheses behind the adaptive management of fall low-salinity habitat as set forth in the adaptive management plan. • To begin to put the results from the fall low-salinity habitat studies into context within the larger body of knowledge regarding the San Francisco Estuary and, in particular, the upper San Francisco Estuary, including the Sacramento-San Joaquin Delta, Suisun Bay, and associated embayments. The basic approach of this report is to evaluate predictions derived from the hypotheses included in the conceptual model developed within the adaptive management plan. All available data from studies and monitoring conducted in fall 2011 and similar data from fall 2006, which was the most recent wet year preceding 2011, were considered. Data from 2005 and 2010 were also considered, to include the conditions antecedent to those years. Many of the predictions either could not be evaluated with the data available, or the needed data were not collected. Most of the predictions that could be addressed involved either the abiotic habitat components (that is, the physical environment) or delta smelt responses. In general, the fall low-salinity habitat investigation has been largely inconclusive as of the writing of this report. This is not to be unexpected in the first year of what is intended to be a multi-year adaptive-management effort. This report can be viewed as the first chapter of a “living document” that is to be continually updated as part of the adaptive management cycle. The results of this report, especially predictions with insufficient data for evaluation, indicate a number of science-based approaches to improve the fall low-salinity habitat investigations: • Develop a method of measuring “hydrodynamic complexity.” This concept is central to a number of the predictions that could not be evaluated. • Determine if wind speed warrants a stand-alone prediction. The wind-speed prediction is directly related to the turbidity predictions, and wind is only one of several factors important for determining turbidity. • Determine the correct spatial and temporal scale or scales necessary for monitoring and for studies to address the predicted abiotic and biotic responses. Many of the assessments in this report were based on monthly sampling of dynamic habitat components, such as phytoplankton and zooplankton populations, that can change on daily scales. • Address the nutrient predictions as part of developing a phytoplankton production model that includes nutrient cycling and other important processes, if feasible. At a minimum develop a mechanistic conceptual model to support more processed-based interpretations of data or design of new studies, rather than making simple predictions of increase or decrease. • Determine if studies of predation rates are feasible in areas where there are delta smelt.

California↗