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USGS2005

Estimation of regional material yield from coastal landslides based on historical digital terrain modelling

High-resolution historical (1942) and recent (1994) digital terrain models were derived from aerial photographs along the Big Sur coastline in central California to measure the long-term volume of material that enters the nearshore environment. During the 52-year measurement time period, an average of 21 000 ?? 3100 m3 km-1 a-1 of material was eroded from nine study sections distributed along the coast, with a low yield of 1000 ?? 240 m3 km-1 a-1 and a high of 46 700 ?? 7300 m3 km-1 a-1. The results compare well with known volumes from several deep-seated landslides in the area and suggest that the processes by which material is delivered to the coast are episodic in nature. In addition, a number of parameters are investigated to determine what influences the substantial variation in yield along the coast. It is found that the magnitude of regional coastal landslide sediment yield is primarily related to the physical strength of the slope-forming material. Coastal Highway 1 runs along the lower portion of the slope along this stretch of coastline, and winter storms frequently damage the highway. The California Department of Transportation is responsible for maintaining this scenic highway while minimizing the impacts to the coastal ecosystems that are part of the Monterey Bay National Marine Sanctuary. This study provides environmental managers with critical background data on the volumes of material that historically enter the nearshore from landslides, as well as demonstrating the application of deriving historical digital terrain data to model landscape evolution. Published in 2005 by John Wiley & Sons, Ltd.

Earth Surface Processes and Landforms↗

USGS2024

Potential impacts of an autumn oil spill on polar bears summering on land in northern Alaska

Demand for oil and natural gas continues to increase, leading to the development of remote regions where it is riskier to operate. Many of these regions have had limited development, so understanding potential impacts to wildlife could inform management decisions. In 2017, the United States passed legislation allowing oil and gas development in the coastal plain of the Arctic National Wildlife Refuge in northeastern Alaska. This area has received limited industrial development and is an important region for polar bears that use the coastline as a travel corridor in autumn. We sought to understand how an autumn near-shore oil spill in the Refuge could affect polar bears. We simulated oil spills from shallow sub-sea pipelines at 3 locations along the coastline of the Refuge and allowed spills to discharge 4800 barrels of oil per day for 6 days, and tracked oil for 50 days. We interacted the trajectories with simulated polar bear movements to estimate how many bears might be exposed. Oil spread quickly along the coastline and during some weeks exposed an average of 10 bears (95 % CI: 0–37) to lethal levels of oil, and 60 (95 % CI: 9–120) to sub-lethal levels. Our results suggest a significant number of polar bears could become oiled from a spill in the region and require decontamination. Therefore, future mitigation strategies could include careful siting of future development and additional capacity to capture and decontaminate bears in the event of an oil spill.

Alaska↗

USGS2022

Microbial source tracking and evaluation of best management practices for restoring degraded beaches of Lake Michigan

Attempts to mitigate shoreline microbial contamination require a thorough understanding of pollutant sources, which often requires multiple years of data collection (e.g., point/nonpoint) and the interacting factors that influence water quality. Because restoration efforts can alter shoreline or beach morphology, revisiting source inputs is often necessary. Microbial source tracking (MST) using source-specific molecular markers, genomic community analyses, and physical modeling was used to identify contamination sources along three Lake Michigan beaches of the Laurentian Great Lakes with historically high fecal indicator bacteria (FIB, E. coli ) concentrations. Genetic markers for human (Bacteroides HF183) and mixed gull species ( Catellicoccus marimammalium ) fecal sources were tested from water and sediment. Gene sequencing (16S rRNA) was used to identify similarities in bacterial communities in nearshore water, river inputs, sand, sediment, and groundwater. Synoptic surveys of water exchange were conducted to determine nearshore-offshore interactions of FIB. In addition to these MST studies, best management practices to mitigate FIB, including gull deterrence, slope grading, wetland establishment, and shoreline plantings, were reviewed for their effectiveness at reducing FIB concentrations over time. Using multiple tools for MST helped identify primary and secondary sources of FIB (gulls, stormwater inputs) and the physical processes that exacerbate FIB concentrations (onshore currents, limited circulation). Management actions were successful in the short-term at reducing FIB, but scope of success was temporally limited, with FIB concentrations often rebounding. Results highlight the usefulness of MST to inform best management practices and the need for a sustained adaptive approach that adjusts for changes in the coastal system.

Illinois, Wisconsin↗

USGS2009

Cone penetration test and soil boring at the Bayside Groundwater Project Site in San Lorenzo, Alameda County, California

Aquifer-system deformation associated with ground-water-level changes is being investigated cooperatively by the U.S. Geological Survey (USGS) and the East Bay Municipal Utility District (EBMUD) at the Bayside Groundwater Project (BGP) near the modern San Francisco Bay shore in San Lorenzo, California. As a part of this project, EBMUD has proposed an aquifer storage and recovery (ASR) program to store and recover as much as 3.78x104 m3/d of water. Water will be stored in a 30-m sequence of coarse-grained sediment (the 'Deep Aquifer') underlying the east bay alluvium and the adjacent ground-water basin. Storing and recovering water could cause subsidence and uplift at the ASR site and adjacent areas because the land surface will deform as aquifers and confining units elastically expand and contract with ASR cycles. The Deep Aquifer is overlain by more than 150 m of clayey fine-grained sediments and underlain by comparable units. These sediments are similar to the clayey sediments found in the nearby Santa Clara Valley, where inelastic compaction resulted in about 4.3 m of subsidence near San Jose from 1910 to 1995 due to overdraft of the aquifer. The Deep Aquifer is an important regional resource, and EBMUD is required to demonstrate that ASR activities will not affect nearby ground-water management, salinity levels, or cause permanent land subsidence. Subsidence in the east bay area could induce coastal flooding and create difficulty conveying winter storm runoff from urbanized areas. The objective of the cooperative investigation is to monitor and analyze aquifer-system compaction and expansion, as well as consequent land subsidence and uplift resulting from natural causes and any anthropogenic causes related to ground-water development and ASR activities at the BGP. Therefore, soil properties related to compressibility (and the potential for deformation associated with ground-water-level changes) are of the most concern. To achieve this objective, 3 boreholes were drilled at the BGP for the purpose of monitoring pore-fluid pressure changes and aquifer-system deformation. One 308-m deep borehole contains six piezometers, the other two boreholes are 182 and 299 m deep and contain a dual-stage extensometer. To investigate the physical properties of the sediments, two phases of subsurface exploration were conducted. In the first phase, a USGS drilling crew obtained numerous core samples, 5.8 cm in diameter by 1.5 m long. The samples were extracted between July 28, 2006, and August 5, 2006; nine samples were tested for this study at the USGS soils laboratory in Menlo Park, California. Phase two began on June 22, 2006, when a seismic cone penetration test (SCPT) sounding was made to a depth of 32.3 m. Additional field work was completed May 8, 2007, with a hollow-stem auger boring that took continuous 9.8-cm-diameter samples from the depth interval of 6.1 to 10.7 m to supplement poor recovery from the first phase of sampling. These samples were also tested in the soils laboratory at the USGS.

California↗

USGS2011

Coastal circulation and water-column properties off Kalaupapa National Historical Park, Molokai, Hawaii, 2008-2010

More than 2.2 million measurements of oceanographic forcing and the resulting water-column properties were made off U.S. National Park Service's Kalaupapa National Historical Park on the north shore of Molokai, Hawaii, between 2008 and 2010 to understand the role of oceanographic processes on the health and sustainability of the area's marine resources. The tides off the Kalaupapa Peninsula are mixed semidiurnal. The wave climate is dominated by two end-members: large northwest Pacific winter swell that directly impacts the study site, and smaller, shorter-period northeast trade-wind waves that have to refract around the peninsula, resulting in a more northerly direction before propagating over the study site. The currents primarily are alongshore and are faster at the surface than close to the seabed; large wave events, however, tend to drive flow in a more cross-shore orientation. The tidal currents flood to the north and ebb to the south. The waters off the peninsula appear to be a mix of cooler, more saline, deeper oceanic waters and shallow, warmer, lower-salinity nearshore waters, with intermittent injections of freshwater, generally during the winters. Overall, the turbidity levels were low, except during large wave events. The low overall turbidity levels and rapid return to pre-event background levels following the cessation of forcing suggest that there is little fine-grained material. Large wave events likely inhibit the settlement of fine-grained sediment at the site. A number of phenomena were observed that indicate the complexity of coastal circulation and water-column properties in the area and may help scientists and resource managers to better understand the implications of the processes on marine ecosystem health.

Hawai'i↗

USGS2013

Estimates of future inundation of salt marshes in response to sea-level rise in and around Acadia National Park, Maine

Salt marshes are ecosystems that provide many important ecological functions in the Gulf of Maine. The U.S. Geological Survey investigated salt marshes in and around Acadia National Park from Penobscot Bay to the Schoodic Peninsula to map the potential for landward migration of marshes using a static inundation model of a sea-level rise scenario of 60 centimeters (cm; 2 feet). The resulting inundation contours can be used by resource managers to proactively adapt to sea-level rise by identifying and targeting low-lying coastal areas adjacent to salt marshes for conservation or further investigation, and to identify risks to infrastructure in the coastal zone. For this study, the mapping of static inundation was based on digital elevation models derived from light detection and ranging (LiDAR) topographic data collected in October 2010. Land-surveyed control points were used to evaluate the accuracy of the LiDAR data in the study area, yielding a root mean square error of 11.3 cm. An independent accuracy assessment of the LiDAR data specific to salt-marsh land surfaces indicated a root mean square error of 13.3 cm and 95-percent confidence interval of ± 26.0 cm. LiDAR-derived digital elevation models and digital color aerial photography, taken during low tide conditions in 2008, with a pixel resolution of 0.5 meters, were used to identify the highest elevation of the land surface at each salt marsh in the study area. Inundation contours for 60-cm of sea-level rise were delineated above the highest marsh elevation for each marsh. Confidence interval contours (95-percent,± 26.0 cm) were delineated above and below the 60-cm inundation contours, and artificial structures, such as roads and bridges, that may present barriers to salt-marsh migration were mapped. This study delineated 114 salt marshes totaling 340 hectares (ha), ranging in size from 0.11 ha (marshes less than 0.2 ha were mapped only if they were on Acadia National Park property) to 52 ha, with a median size of 1.0 ha. Inundation contours were mapped at 110 salt marshes. Approximately 350 ha of low-lying upland areas adjacent to these marshes will be inundated with 60 cm of sea-level rise. Many of these areas are currently freshwater wetlands. There are potential barriers to marsh migration at 27 of the 114 marshes. Although only 23 percent of the salt marshes in the study are on ANP property, about half of the upland areas that will be inundated are within ANP; most of the predicted inundated uplands (approximately 170 ha) include freshwater wetlands in the Northeast Creek and Bass Harbor Marsh areas. Most of the salt marshes analyzed do not have a significant amount of upland area available for migration. Seventy-five percent of the salt marshes have 20 meters or less of adjacent upland that would be inundated along most of their edges. All inundation contours, salt marsh locations, potential barriers, and survey data are stored in geospatial files for use in a geographic information system and are a part of this report.

Maine↗

USGS2019

Contemporary environmental assessment using a viability analysis in a large river system to inform restoration and adaptive management decisions

As large-scale restoration plans for degraded aquatic habitats evolve, it is essential that multiorganizational collaborations have a common vision to achieve consensus on restoration goals. Development of restoration targets and postrestoration monitoring strategies can be focused using a viability analysis framework that supports an adaptive management process. Viability analysis is a robust and accommodating framework, adaptable to any restoration monitoring program and, through the determination of common desired endpoints, can aid consensus building and collaboration across jurisdictional boundaries. In the St. Clair-Detroit River System, which is the Great Lakes connecting channel between southern Lake Huron and western Lake Erie, a viability analysis framework was used to evaluate environmental parameters associated with fisheries and aquatic restoration efforts and to gauge the overall health of the aquatic environment. Steps to derive the viability analysis were as follows: (1) establishing meaningful baseline metrics, (2) identifying information deficiencies, and (3) placing the context of current conditions into a usable format for managers and practitioners. Most geographic segments were designated in overall fair condition, and the conservation targets were designated in either good or fair condition, based on available assessed indicators. Many indicators were unable to be assessed or assigned condition status, which identified research and monitoring data gaps. Metrics associated with native migratory fishes, Lake St. Clair, and islands are generally in better condition than metrics associated with the coastal terrestrial systems, aerial migrants, and coastal wetlands. These results were not unexpected given the highly urbanized landscape of the St. Clair-Detroit River System. Resource managers in the corridor can use these results to identify knowledge gaps, research and restoration priorities, and to assess progress towards meeting restoration goals.

Michigan, Ontario↗

USGS2016

Topobathymetric elevation model development using a new methodology: Coastal National Elevation Database

During the coming decades, coastlines will respond to widely predicted sea-level rise, storm surge, and coastalinundation flooding from disastrous events. Because physical processes in coastal environments are controlled by the geomorphology of over-the-land topography and underwater bathymetry, many applications of geospatial data in coastal environments require detailed knowledge of the near-shore topography and bathymetry. In this paper, an updated methodology used by the U.S. Geological Survey Coastal National Elevation Database (CoNED) Applications Project is presented for developing coastal topobathymetric elevation models (TBDEMs) from multiple topographic data sources with adjacent intertidal topobathymetric and offshore bathymetric sources to generate seamlessly integrated TBDEMs. This repeatable, updatable, and logically consistent methodology assimilates topographic data (land elevation) and bathymetry (water depth) into a seamless coastal elevation model. Within the overarching framework, vertical datum transformations are standardized in a workflow that interweaves spatially consistent interpolation (gridding) techniques with a land/water boundary mask delineation approach. Output gridded raster TBDEMs are stacked into a file storage system of mosaic datasets within an Esri ArcGIS geodatabase for efficient updating while maintaining current and updated spatially referenced metadata. Topobathymetric data provide a required seamless elevation product for several science application studies, such as shoreline delineation, coastal inundation mapping, sediment-transport, sea-level rise, storm surge models, and tsunami impact assessment. These detailed coastal elevation data are critical to depict regions prone to climate change impacts and are essential to planners and managers responsible for mitigating the associated risks and costs to both human communities and ecosystems. The CoNED methodology approach has been used to construct integrated TBDEM models in Mobile Bay, the northern Gulf of Mexico, San Francisco Bay, the Hurricane Sandy region, and southern California.

Journal of Coastal Research↗

USGS2018

Submerged aquatic vegetation mapping in coastal Louisiana through development of a spatial likelihood occurrence (SLOO) model

Determining the spatial distribution of coastal foundation species is essential to accurately determine restoration goals, predict the ecological effects of climate change, and develop habitat management strategies. Mapping the distribution of submerged aquatic vegetation (SAV) species assemblages, which provide important habitat resource and ecological services in Louisiana, has been difficult due to the dynamic nature of SAV occurrence and the limited water clarity across much of the coast. Species distribution models (SDMs) link ecological conditions species occurrence across landscapes, and can predict the distribution of species across un-sampled or hard to sample areas and support the development of habitat maps. To predict SAV distribution in coastal Louisiana, a SDM was developed and projected across the landscape to create a spatial likelihood of occurrence (SLOO) model describing the probability of SAV presence in aquatic habitats. SAV presence and absence data were examined from over 500 field observations in relation to physical and hydrologic variables, including exposure, turbidity, water level, and salinity. A binary logistic regression model (p < 0.0001) identified three significant predictors of SAV presence: mean winter salinity, exposure, and turbidity. As each of these variables increased, the probability of SAV presence in the summer growing season decreased. The spatial application of this SDM helps to predict the likelihood of occurrence across the coastal landscape, creating a valuable tool to describe un-sampled SAV habitat and estimate future changes in habitat availability.

Louisiana↗

USGS2020

Nutrient status of San Francisco Bay and its management implications

Nutrient enrichment has degraded many of the world’s estuaries by amplifying algal production, leading to hypoxia/anoxia, loss of vascular plants and fish/shellfish habitat, and expansion of harmful blooms (HABs). Policies to protect coastal waters from the effects of nutrient enrichment require information to determine if a water body is impaired by nutrients and if regulatory actions are required. We compiled information to inform these decisions for San Francisco Bay (SFB), an urban estuary where the best path toward nutrient management is not yet clear. Our results show that SFB has high nutrient loadings, primarily from municipal wastewater; there is potential for high algal production, but that production is not fully realized; and SFB is not impaired by hypoxia or recurrent HABs. However, our assessment includes reasons for concern: nitrogen and phosphorus concentrations higher than those in other estuaries impaired by nutrient pollution, chronic presences of multiple algal toxins, a recent increase of primary production, and projected future hydroclimatic conditions that could increase the magnitude and frequency of algal blooms. Policymakers thus face the challenge of determining the appropriate protective policy for SFB. We identify three crucial next steps for meeting this challenge: (1) new research to determine if algal toxins can be reduced through nutrient management, (2) establish management goals as numeric targets, and (3) determine the magnitude of nutrient load reduction required to meet those targets. Our case study illustrates how scientific information can be acquired and communicated to inform policymakers about the status of nutrient pollution, its risks, and strategies for minimizing those risks.

California↗

USGS2017

Estimating occurrence and detection probabilities for stream-breeding salamanders in the Gulf Coastal Plain

Large gaps exist in our knowledge of the ecology of stream-breeding plethodontid salamanders in the Gulf Coastal Plain. Data describing where these salamanders are likely to occur along environmental gradients, as well as their likelihood of detection, are important for the prevention and management of amphibian declines. We used presence/absence data from leaf litter bag surveys and a hierarchical Bayesian multispecies single-season occupancy model to estimate the occurrence of five species of plethodontids across reaches in headwater streams in the Gulf Coastal Plain. Average detection probabilities were high (range = 0.432–0.942) and unaffected by sampling covariates specific to the use of litter bags (i.e., bag submergence, sampling season, in-stream cover). Estimates of occurrence probabilities differed substantially between species (range = 0.092–0.703) and were influenced by the size of the upstream drainage area and by the maximum proportion of the reach that dried. The effects of these two factors were not equivalent across species. Our results demonstrate that hierarchical multispecies models successfully estimate occurrence parameters for both rare and common stream-breeding plethodontids. The resulting models clarify how species are distributed within stream networks, and they provide baseline values that will be useful in evaluating the conservation statuses of plethodontid species within lotic systems in the Gulf Coastal Plain.

Journal of Herpetology↗

USGS2020

Using advanced population genomics to better understand the relationship between offshore and spawning habitat use for Atlantic Sturgeon

Atlantic Sturgeon ( Acipenser oxyrinchus oxyrinchus ) are a large-bodied anadromous fish that historically supported important fisheries along the east coast of the United States. Following years of overharvest and habitat degradation, populations experienced severe declines. In 2012, the National Marine Fisheries Service listed Atlantic Sturgeon under the Endangered Species Act (ESA; 61 FR 4722). Their listing named five Distinct Population Segments (DPSs), predicated on genetic groups composed of geographically proximate populations. Federal management of Atlantic Sturgeon presents challenges, as sturgeon from each of the five DPSs mix extensively in coastal and marine habitats yet take and recovery progress must be evaluated separately for each unit. Genetic assignment testing based on mitochondrial and microsatellite markers allows individuals to be assigned back to their natal river and DPS. However, this approach is not perfect and some individuals may be incorrectly assigned. Recent advances in genomics offer the potential of a higher resolution approach to genetic assignment testing, and thus may reduce uncertainty associated with assignment testing. In addition, genomics allows a greater number of markers to be examined from across a broader portion of the sturgeon genome, thus may provide an enhanced perspective of population structure for the species, and potentially allow other previously intractable questions to be addressed (Bernatchez et al. 2017, Supple and Shapiro 2018). We used next-generation sequencing to develop a draft genome for Atlantic Sturgeon and identify single nucleotide polymorphisms (SNPs) that could be used to resolve the natal river and DPS of individual Atlantic Sturgeon. We identified 1,210 candidate SNPs within the nuclear genome as well as 49 SNPs within the mitochondrial genome. After filtering and review, we selected 161 nuclear SNPs and 39 mitochondrial SNPs for further testing and evaluation. We used genotyping-in-thousands by sequencing (GT-seq) to simultaneously sequence nuclear SNP loci, mitochondrial SNP loci, and the existing panel of twelve microsatellite loci. This effort required a pilot sequencing run on a single sturgeon sample to test marker amplification and refine primer strengths, followed by a series of sequencing runs to generate baseline data for 288 individuals representing nine populations of Atlantic Sturgeon in four DPSs. Using baseline data from the nine populations, we ran a series of genomic analyses to characterize diversity within and among populations, providing a benchmark for this species using the new SNP markers. Allelic richness was similar for all populations, although there was a general trend of more northern population containing greater levels of allelic richness. Interestingly, we observed linkage disequilibrium among many pairs of loci within many populations. This might be the result of physical linkage but could also suggest these populations are recovering from genetic bottlenecks and/or are effectively small, leading to specific haplotypes to be favored by chance. Pairwise differentiation among populations varied among the populations ( F ST range: 0.010-0.098) and was significantly correlated ( r = 0.771; P < 0.001) to pairwise F ST observed using microsatellite markers). Population clustering and ordination techniques using the new genomic data both support an overall population structure that is similar to the current DPS management units (which were developed primarily based on microsatellite genetic data). Overall, this suggests that existing microsatellite markers and the panel of SNP markers developed in this study provide similar information about the populations structure and ecology of Atlantic Sturgeon. Given the observed differences in allele frequencies among populations, our genomic baseline supports previous assertations that Atlantic Sturgeon show natal homing, despite mixing extensively in marine waters during non-breeding periods. Lower levels of differentiation between populations in the South Atlantic DPS suggest that populations in this region may have greater levels of gene flow relative to their more northerly conspecifics, which has also previously been suggested based on microsatellite data. The observed differentiation among populations provides the necessary foundation for determining the natal river and DPS of Atlantic Sturgeon using assignment testing. We tested the utility of our new genomic baseline for resolving the population and DPS of Atlantic Sturgeon. Our nuclear SNP markers showed utility for identifying the origin of unknown Atlantic Sturgeon samples, as 86.5% were assigned to the correct DPS and 66.3% were assigned to the correct natal river. However, since this study was funded the Conservation Genetics and Genomics Laboratory at Leetown Science Center has made significant improvements to their microsatellite genetic baseline, which now performs more effectively than our new genomic approach (the genetic baseline includes 12 populations and 5 DPSs, and correctly assigns 95.8% of individuals to DPS and 84.9% of individuals to their natal population using 12 microsatellite loci). We conducted an ad hoc exploration of how additional microsatellite or nuclear SNP loci may further improve the accuracy of assignment testing. We found that additional microsatellite markers are likely to result in greater improvements in assignment efficiency than additional nuclear SNPs. However, a much larger number of SNP loci (which if identified could be sequenced using other methods that are now available; e.g., the RAD-capture approach published by Ali et al. 2016) could produce assignment efficiencies that are greater than what is currently feasible using microsatellites. In the absence of further research and development of additional SNP markers for Atlantic Sturgeon (possibly using an approach other than GT-seq), the existing microsatellite loci are the most effective means available to determine the natal river and DPS of Atlantic Sturgeon encountered in offshore waters. Because our new genomic markers were less effective than the existing panel of 12 microsatellite markers, we chose to use the existing microsatellite markers to assign Atlantic Sturgeon captured in another BOEM-funded study (cooperative agreement M16AC00003; Monitoring endangered Atlantic Sturgeon and commercial finfish habitat use offshore New York) following consultation with our project officer. Using this approach, we genotyped and assigned 186 Atlantic Sturgeon captured in coastal waters off the Rockaway Peninsula, New York. The vast majority of these sturgeon were assigned to the New York Bight DPS (94.62%), and most appear to belong to the Hudson River population (87.10%) with smaller contributions from the Delaware River population (7.53%). Smaller contributions (2.15%) were observed from six other populations, including those from the James, York, Kennebec, Ogeechee, and Edisto rivers. Although most of the fish we assigned were assigned to the nearest spawning rivers (Hudson and Delaware), the contributions from distant rivers is consistent with the propensity of this species to move long distances and form mixed stock aggregations along the continental shelf. This finding indicates that spawning populations (and their corresponding DPS) from distant locations may potentially be impacted by offshore activities. In fact, activities in this region of the New York Bight could negatively impact Atlantic Sturgeon population from at least four different DPSs. Genetic or genomic assignment testing remains an essential tool to characterize potential impacts to Atlantic Sturgeon populations and should be applied more broadly to better characterize potential impacts of activities in other locations.

Atlantic Coast↗

USGS2016

Circumpolar Biodiversity Monitoring Programme coastal biodiversity monitoring background paper

In 2014, the United States (U.S.) and Canada agreed to act as co-lead countries for the initial development of the Coastal Expert Monitoring Group (CEMG) as part of the Circumpolar Biodiversity Monitoring Program (CBMP, www. cbmp.is) under the Arctic Council’s Conservation of Arctic Flora and Fauna (CAFF, www.caff.is) working group. The CAFF Management Board approved Terms of Reference for the CEMG in the spring of 2014. The primary goal of the CEMG is to develop a long term, integrated, multi-disciplinary, circumpolar Arctic Coastal Biodiversity Monitoring Plan (the Coastal Plan) that relies on science and Traditional Knowledge, and has direct and relevant application for communities, industry, government decision makers, and other users. In addition to the monitoring plan, the CAFF working group has asked the CBMP, and thus the CEMG, to develop an implementation plan that identifies timeline, costs, organizational structure and partners. This background paper provides a platform for the guidance for the development of the Coastal Plan and is produced by the CEMG with assistance from a number of experts in multiple countries.

Report↗

USGS2023

Phragmites management in high water: Cutting plants under water limits biomass production, carbohydrate storage, and rhizome viability

Invasion of Phragmites australis (common reed) in wetlands throughout North America, and particularly the Laurentian Great Lakes Basin, poses significant ecological problems. The extended period of low Great Lakes water levels from 2000 to 2013 created conditions for large expansions of Phragmites in the Great Lakes coastal zone. The following extended period of high water in the Great Lakes during late 2010’s, culminating in record high lake levels in 2020 allowed managers to take advantage of high water by using a cut-to-drown management strategy (i.e., cutting plants below the water surface to stop the flow of atmospheric gases) to control Phragmites populations. To examine the efficacy of a cut-to-drown control strategy, we conducted a controlled-greenhouse study that tested the effect of submergence and timing of cutting (early or late in growing season) on Phragmites growth and viability post treatment. To evaluate Phragmites growth and viability, we measured belowground biomass, rhizome non-structural carbohydrate content (NSC), and rhizome viability following a cut-to-drown treatment. Applying a cut-to-drown treatment reduced average belowground biomass production up to 99%, limited rhizome NSC content up to 83%, and inhibited rhizome viability, regardless of timing of cutting treatments. These results suggest that under high-water conditions, utilizing a cut-to-drown strategy has potential for being a useful control mechanism for Phragmites . However, further research is needed to determine to what extent these results will lead to sustained reductions in growth and viability under field conditions, where rhizome belowground biomass and storage capacity are much larger.

Wetlands Ecology and Management↗

USGS2004

National Wildlife Refuge System: Ecological context and integrity

The Refuge Improvement Act of 1997 established a statutory mission and management standards for the National Wildlife Refuge system. The U.S. Fish and Wildlife Service subsequently issued a policy for ensuring the biological integrity, diversity, and environmental health of the system. This policy requires understanding the management objectives of each refuge in a local, regional, and national context. An assessment of the refuge system in a national and regional context reveals that refuges are typically smaller than many conservation holdings and are unevenly distributed across the conterminous U.S. Western rangelands, coastal wetlands, and northern grasslands; wetlands are the best-represented ecosystems, while temperate forests have the poorest representation. In contrast to other agency holdings or management designations in the national protected areas network (e.g., national parks, national forests, wilderness areas), refuges tend to occupy sites at lower elevations and that have higher productivity and soil quality. This difference points to the important contribution of the refuges in providing much needed ecological balance within the national protected areas network. However, the ecological integrity of the refuge system is challenged by the proximity of individual refuges to development. Overall, the refuges are becoming islands in a landscape matrix of urban and agricultural development. This creates future challenges for meeting management objectives to ensure the biological integrity, diversity, and environmental health of the system. If the policy to ensure biological integrity, diversity, and environmental health of the refuge system is to be successful, it may be more important to address issues about what happens on adjacent lands than uses within refuges.

Natural Resources Journal↗

USGS2008

Wildland fire in ecosystems: Fire and nonnative invasive plants

This state-of-knowledge review of information on relationships between wildland fire and nonnative invasive plants can assist fire managers and other land managers concerned with prevention, detection, and eradication or control of nonnative invasive plants. The 16 chapters in this volume synthesize ecological and botanical principles regarding relationships between wildland fire and nonnative invasive plants, identify the nonnative invasive species currently of greatest concern in major bioregions of the United States, and describe emerging fire-invasive issues in each bioregion and throughout the nation. This volume can help increase understanding of plant invasions and fire and can be used in fire management and ecosystem-based management planning. The volume’s first part summarizes fundamental concepts regarding fire effects on invasions by nonnative plants, effects of plant invasions on fuels and fire regimes, and use of fire to control plant invasions. The second part identifies the nonnative invasive species of greatest concern and synthesizes information on the three topics covered in part one for nonnative invasives in seven major bioregions of the United States: Northeast, Southeast, Central, Interior West, Southwest Coastal, Northwest Coastal (including Alaska), and Hawaiian Islands. The third part analyzes knowledge gaps regarding fire and nonnative invasive plants, synthesizes information on management questions (nonfire fuel treatments, postfire rehabilitation, and postfire monitoring), summarizes key concepts described throughout the volume, and discusses urgent management issues and research questions.

General Technical Report↗

USGS2018

Sediment supply to San Francisco Bay, water years 1995 through 2016: Data, trends, and monitoring recommendations to support decisions about water quality, tidal wetlands, and resilience to sea level rise

Knowledge of the status and trends of sediment supply to San Francisco Bay is critically important for management decisions about dredging, marsh restoration, flood control, contaminants, water clarity (in relation to primary production), and sea level rise. Several sitespecific studies of sediment supply to San Francisco Bay have been conducted, but no synthesis of recent studies is available. The purpose of this report is to synthesize the best available data and knowledge to answer a few of the key study questions related to sediment supply to the Bay (listed below). This synthesis report was prepared jointly by the Regional Monitoring Program for Water Quality in San Francisco Bay (RMP) and the U. S. Geological Survey (USGS) with funding from both organizations. The project is meant to be a step in the development of a more comprehensive sediment management and monitoring strategy for the Bay. What are the magnitudes and sources of fine and coarse sediment transported to San Francisco Bay? Net sediment supply to San Francisco Bay from terrestrial sources during the most recent 22- year period (water years [WY] 1995-2016) was 1.9+/-0.8 Mt/yr (1 Mt is one million metric tonnes or 1 billion kilograms). Sixty-three percent of the sediment supply was from small tributaries that drain directly to the Bay. Net supply from the Central Valley (measured at Mallard Island) was 37% of the total supply. Bedload supply, after accounting for dredging, removals, storage in flood control channels, and errors in measurements was indistinguishable from zero. For a 30-year “climate normal” reference period of WY 1981-2010 (a period assumed to be representative of current climatic conditions), we estimate the total sediment supply would be 2.0 Mt/yr of which 70% would come from small tributaries. The delivery points are Mallard Island for sediment from the Delta and the head of tide of each small tributary or outfall for sediment from the small tributaries. The finding that, on average, small tributaries have supplied more sediment to the Bay than the Delta is important but not new (McKee et al., 2013). During the Gold Rush and perhaps through to the 1980s, 80% or more of the supply was estimated to be from the Central Valley (Porterfield, 1980). But land and water management have continued to evolve (Krone, 1996) and the sediment wave associated with the Gold Rush has diminished (Schoellhamer, 2011). In addition, the coastal mountains of California and around the Bay are steep, tectonically active and composed of relatively erodible marine sedimentary and metasedimentary rocks, in contrast to the Central Valley watershed that is dominated by highly indurated granitic, metasedimentary, and metavolcanic rocks in the western-facing slopes of the Sierra Nevada Mountains (McKee et al., 2013). Also, water management is quite different between the Central Valley rivers and small tributaries. About 48% of the Central Valley watershed is upstream from dams that are designed to capture, delay and diminish discharge from spring snowmelt and so eliminate or damp many of the peak flows that are normally crucial for sediment transport. Another factor contributing to the importance of small tributaries for sediment supply is the way that they deliver sediment. Annual discharge from small tributaries is very small in comparison to the volume of the Bay (around one-fifth of a Bay volume on average), and the load that small tributaries supply is delivered through hundreds of channels and outfalls via wetland sloughs to the mudflats on the margin of the Bay. Therefore, the majority of this sediment delivered from Bay Area small tributaries is more likely to be trapped in these tidal channels or the margins of the Bay. In contrast, supply from the Central Valley enters the Bay through one large river channel at the head of the estuary (functionally adjacent to Mallard Island, near Pittsburg, CA) with an average annual discharge volume that is more than twi

California↗

USGS2009

Land Cover Trends in the Southern Florida Coastal Plain

This report presents an assessment of land use and land cover change in the Southern Florida Coastal Plain ecoregion for the period from 1973 to 2000. The ecoregion is one of 84 level III ecoregions defined by the Environmental Protection Agency; ecoregions have been designed to serve as a spatial framework for environmental resource management and denote areas that contain a geographically distinct assemblage of biotic and abiotic phenomena, including geology, physiography, vegetation, climate, soils, land use, wildlife, and hydrology. The Southern Florida Coastal Plain ecoregion covers an area of approximately 22,407 square kilometers [8,651 square miles] across the lower portion of the Florida peninsula, from Lake Okeechobee southward through the Florida Keys. It comprises flat plains with wet soils, marshland and swamp land cover with Everglades and palmetto prairie vegetation types.

Scientific Investigations Report↗