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Fire in the Cape Region of South Africa

South Africa's mediterranean-type climate (MTC) region is the smallest of the five MTC regions, centered in the southwestern corner of the Western Cape Province (Fig. 7.1). This Cape region is dominated by fynbos shrublands (see Fig. 1.6e) but this fynbos biome continues eastward far outside the MTC. The Cape region is unusual in that shrublands dominate under climate regimes that also support forests. Entire landscapes can support alternative ecosystem states. Even the semi-arid areas can support entirely different vegetation: fire-prone shrublands or fire-resistant broadleaf thickets. Perhaps more than any other MTC region, fire plays a central role in determining major vegetation patterns of winter rainfall regions of South Africa. Soils are also thought to be of major importance since much of the Cape's MTC region is on nutrient-poor sandy soils (see Fig. 1.5). A complex interplay between soils, fire and climate and, in the east, large mammal herbivory, determines boundaries of major biomes. The Cape Floristic Region is extremely rich in species with very high levels of endemism (Linder 2003). It is the world's richest temperate flora and is largely restricted to fire-prone ecosystems (Cowling et al . 1996; Linder 2003). So, contrary to the widely held popular belief that fires are an anthropogenic disturbance (e.g. Pillans 1924; Axelrod 1980), or merely incidental to this formation (Hopper 2009), a rich endemic flora has evolved in the Cape whose members are overwhelmingly fire dependent, implying a long history of natural fires as a selective force. Major Vegetation Patterns This chapter discusses fire regimes in the Cape region, what little is known of their determinants, and how they influence major vegetation patterns in the region. Though a large number of studies have explored plant responses to fire (reviewed by Bond 1997; Cowling et al . 1997a), these are heavily biased toward fynbos shrublands, the dominant vegetation cover of the region (Fig. 7.2). Fire responses of species belonging to other vegetation types are poorly known. Yet the existence of these other vegetation types is one of the central conundrums of the Cape region. It implies failure of climate alone to explain apparent convergence with other MTC regions (Chapter 1). For example, low shrublands would be expected in deserts replaced, as rainfall progressively increases, by taller shrublands, woodlands and then forests. But this is clearly not the case in the Cape region. The dominant fynbos vegetation shows very little variation in aboveground biomass from arid desert fringes (mean annual precipitation ~250 mm) to rain-drenched high-altitude heathlands (> 3000 mm) (Fig. 7.3). Yet across the entire rainfall gradient fynbos co-occurs with alternative ecosystems with much greater woody biomass. These broadleaf thickets and forests have an entirely different floristic and functional composition and often are restricted to isolated fire-protected refugia (Fig. 7.2; Taylor 1978; Kruger 1979; Cowling et al . 2005; Rebelo et al . 2006). The implication is that apparent convergence of shrubby fynbos growth forms with other MTC plant communities cannot be understood in terms of climate alone and that one needs to think in terms of the climate, fire, geology filter (see Fig. 1.4).

Cape region↗

Burrowing mayflies ( Hexagenia ) as indicators of ecosystem health

Three State of the Lakes Ecosystem Conferences have been held since 1996 to encourage the development of Great Lakes indicators of ecosystem health for use in reporting on progress in restoring and maintaining the chemical, physical and biological integrity of the Great Lakes ecosystem. Here we report on the development of an indicator based on burrowing mayflies , Hexagenia (Ephemeroptera: Ephemeridae), using production and biomass as the indicator metrics. Burrowing mayflies were selected because they (1) were historically abundant in unpolluted, soft-bottomed mesotrophic habitats throughout the Great Lakes, (2) are intolerant of and were extirpated by pollution in most of those habitats during the 1940s to1950s, (3) have shown the ability to recover in one of those habitats following pollution abatement, (4) are ecologically important as bioturbators of lakebed sediments and as trophic integrators that link detrital energy resources directly to fishes that feed preferentially on them, and (5) have highly visible mating flights, which carry the message directly to an informed public that the source water body is healthy. In addition, their annual production can be estimated from their mean annual biomass by the sizefrequency method. Productivity and biomass can also could be estimated with a 'cohort-direct' method, using the biomass of mature nymphs collected in May or early June from the cohort that is about to emerge as subimagos in late June or early July. Although both the size-frequency and cohort-direct methods provide reliable estimates of productivity and biomass, the latter method greatly reduces sample collection and processing effort and thus makes it feasible to use Hexagenia as an indicator of ecosystem health in surveys requiring the collection of large numbers of samples.

Aquatic Ecosystem Health & Management↗

Interbasin water transfer, riverine connectivity, and spatial controls on fish biodiversity

Background Large-scale inter-basin water transfer (IBWT) projects are commonly proposed as solutions to water distribution and supply problems. These problems are likely to intensify under future population growth and climate change scenarios. Scarce data on the distribution of freshwater fishes frequently limits the ability to assess the potential implications of an IBWT project on freshwater fish communities. Because connectivity in habitat networks is expected to be critical to species' biogeography, consideration of changes in the relative isolation of riverine networks may provide a strategy for controlling impacts of IBWTs on freshwater fish communities Methods/Principal Findings Using empirical data on the current patterns of freshwater fish biodiversity for rivers of peninsular India, we show here how the spatial changes alone under an archetypal IBWT project will (1) reduce freshwater fish biodiversity system-wide, (2) alter patterns of local species richness, (3) expand distributions of widespread species throughout peninsular rivers, and (4) decrease community richness by increasing inter-basin similarity (a mechanism for the observed decrease in biodiversity). Given the complexity of the IBWT, many paths to partial or full completion of the project are possible. We evaluate two strategies for step-wise implementation of the 11 canals, based on economic or ecological considerations. We find that for each step in the project, the impacts on freshwater fish communities are sensitive to which canal is added to the network. Conclusions/Significance Importantly, ecological impacts can be reduced by associating the sequence in which canals are added to characteristics of the links, except for the case when all 11 canals are implemented simultaneously (at which point the sequence of canal addition is inconsequential). By identifying the fundamental relationship between the geometry of riverine networks and freshwater fish biodiversity, our results will aid in assessing impacts of IBWT projects and balancing ecosystem and societal demands for freshwater, even in cases where biodiversity data are limited.

PLoS ONE↗

Survey of fish communities in tributaries to the Mohawk River, New York, 2019

Fish communities of the Mohawk River and associated sections of the New York State Canal System have been well documented but little information is available regarding the status of fish communities in the extensive network of tributaries that feed the Mohawk River. This lack of information is problematic because changes in species distributions or general ecosystem health may go unnoticed in the absence of baseline data. The need for baseline information has been made particularly urgent by the recent establishment of a high-profile invasive fish species in the mainstem of the Mohawk River, the round goby ( Neogobius melanostomus ). Round goby can adversely affect aquatic ecosystems in numerous ways and are able to colonize streams in addition to large rivers and lakes. This potential threat to the aquatic ecosystem, therefore, has created an urgent need to quantify the distribution and abundance of fish species inhabiting tributaries to the Mohawk River before round goby can begin colonizing these habitats. In response, the U.S. Geological Survey and the Mohawk River Basin Program of the New York State Department of Environmental Conservation initiated a study in 2019 to collect quantitative information on fish communities and stream habitats in tributaries to the Mohawk River that could be used in the future to determine the effects of round goby on local fish assemblages and identify substrate and other habitat characteristics that facilitate or inhibit colonization by round goby. Fish communities were surveyed at 20 sites on tributaries to the Mohawk River during summer 2019, using three-pass depletion backpack electrofishing surveys. The resulting data were used to produce quantitative estimates of fish population density and biomass for all species at each site. A total of 11,794 individual fish and 37 species were captured during the 20 surveys. Longnose dace ( Rhinichthys cataractae ), white sucker ( Catostomus commersonii ), blacknose dace ( Rhinichthys atratulus ), fantail darter ( Etheostoma flabellare ), and creek chub ( Semotilus atromaculatus ) were the most frequently encountered species, occurring at 18, 18, 17, 17, and 16 of the 20 sites, respectively. Six darter species, small bottom-dwelling fish that are highly vulnerable to displacement by round goby, were captured during the surveys, and at least one darter species was captured at all but one of the sites. Round goby were only captured at one site, Ninemile Creek near Rome, New York, where they occurred at a low density. Overall, the results indicated that round goby had not extensively colonized tributaries to the Mohawk River as of 2019, and the suite of data collected in this project should serve as a valuable baseline for future assessments of the effects of round goby and other stressors on aquatic ecosystems.

New York↗

The response of stream periphyton to Pacific salmon: using a model to understand the role of environmental context

1. In stream ecosystems, Pacific salmon deliver subsidies of marine-derived nutrients and disturb the stream bed during spawning. The net effect of this nutrient subsidy and physical disturbance on biological communities can be hard to predict and is likely to be mediated by environmental conditions. For periphyton, empirical studies have revealed that the magnitude and direction of the response to salmon varies from one location to the next. Salmon appear to increase periphyton biomass and/or production in some contexts (a positive response), but decrease them in others (a negative response). 2. To reconcile these seemingly conflicting results, we constructed a system dynamics model that links periphyton biomass and production to salmon spawning. We used this model to explore how environmental conditions influence the periphyton response to salmon. 3. Our simulations suggest that the periphyton response to salmon is strongly mediated by both background nutrient concentrations and the proportion of the stream bed suitable for spawning. Positive periphyton responses occurred when both background nutrient concentrations were low (nutrient limiting conditions) and when little of the stream bed was suitable for spawning (because the substratum is too coarse). In contrast, negative responses occurred when nutrient concentrations were higher or a larger proportion of the bed was suitable for spawning. 4. Although periphyton biomass generally remained above or below background conditions for several months following spawning, periphyton production returned quickly to background values shortly afterwards. As a result, based upon our simulations, salmon did not greatly increase or decrease overall annual periphyton production. This suggests that any increase in production by fish or invertebrates in response to returning salmon is more likely to occur via direct consumption of salmon carcasses and/or eggs, rather than the indirect effects of greater periphyton production. 5. Overall, our simulations suggest that environmental factors need to be taken into account when considering the effects of spawning salmon on aquatic ecosystems. Our model offers researchers a framework for testing periphyton response to salmon across a range of conditions, which can be used to generate hypotheses, plan field experiments and guide data collection.

Freshwater Biology↗

Pathways of productivity and influences on top consumers in forested streams

Forested stream ecosystems involve complex physical and biotic pathways that can influence fish in numerous ways. Consequently, the responses of fish communities to disturbance can be difficult to understand. In this study, we employed a food web model that links biotic (e.g., physiology, predator–prey interactions) and abiotic (e.g., temperature, sunlight) attributes to address fish responses to changes in stream-riparian ecosystems. We modeled responses to food web dynamics in four streams, using scenarios that included responses to riparian disturbance, climate change, and shifts in top consumers. The two consumers we focused on were coastal cutthroat trout ( Oncorhynchus clarkii clarkii ) and sculpin ( Cottus spp., collectively treated as a functional group) . We found the responses to environmental changes varied by fish species and among streams, and that responses were not independent due to exploitative interspecific competition. Simulations based on long-term data indicated that coastal cutthroat trout were responsive to changes in allochthonous resources including terrestrial detritus and invertebrates, whereas sculpin were more responsive to changes to autochthonous resources that included, periphyton and aquatic invertebrates. These results may be, in part, a consequence of species-specific foraging behavior. Trout have a higher propensity to drift feed and therefore receive a substantial subsidy from terrestrial invertebrates, whereas sculpin feed mostly on aquatic insects on the streambed. Simulations of changes in summer temperature and stream discharge suggest decreased biomass of both fish species because of physiological constraints on invertebrate prey which reduce fish foraging opportunities. Exploitative competition also may be important in fish responses: when one fish taxon was removed, the other showed increased biomass. Although the pattern of simulation results was consistent across the four streams, the magnitude of change varied among streams. Streams with food webs fueled by multiple energy sources may be more resilient to changes to riparian forests and climate. Through application of a systems model, we gained insights into pathways of productivity for fish in forested stream ecosystems that provide understanding of processes that influence fish and streams, as well as implications for management of both.

Forest Ecology and Management↗

Climate-water quality relationships in Texas reservoirs

Water temperature, dissolved oxygen, and concentrations of salts in surface water bodies can be affected by the natural environment, local human activities such as surface and ground water withdrawals, land use, and energy extraction, and variability and long-term trends in atmospheric conditions including temperature and precipitation. Here, we quantify the relationship between 121 indicators of mean and extreme temperature and precipitation and 24 water quality parameters in 57 Texas reservoirs using observational data records covering the period 1960 to 2010. We find that water temperature, dissolved oxygen, pH, specific conductance, chloride, sulfate, and phosphorus all show consistent correlations with atmospheric predictors, including high and low temperature extremes, dry days, heavy precipitation events, and mean temperature and precipitation over time scales ranging from one week to two years. Based on this analysis and published future projections for this region, we expect climate change to increase water temperatures, decrease dissolved oxygen levels, decrease pH, increase specific conductance, and increase levels of sulfate, chloride in Texas reservoirs. Over decadal time scales, this may affect aquatic ecosystems in the reservoirs, including altering the risk of conditions conducive to algae occurrence, as well as affecting the quality of water available for human consumption and recreation.

Texas↗

Speciation and transport of newly deposited mercury in a boreal forest wetland: A stable mercury isotope approach

As part of the Mercury Experiment to Assess Atmospheric Loadings in Canada and the United States (METAALICUS) the fate and transport of contemporary mercury (Hg) deposition in a boreal wetland was investigated using an experimentally applied stable mercury isotope. We applied high purity (99.2% ± 0.1) 202 Hg(II) to a wetland plot to determine if (1) the 202 Hg was detectable above the pool of native Hg, (2) the 202 Hg migrated vertically and/or horizontally in peat and pore waters, and (3) the 202 Hg was converted to methylmercury (MeHg) in situ. The 202 Hg was easily detected by ICP/MS in both solid peat and pore waters. Over 3 months, the 202 Hg migrated vertically downward in excess of 15 cm below the water table and traveled several meters horizontally beyond the experimental plot to the lake margin along the dominant vector of groundwater flow. Importantly, at one location, 6% of aqueous 202 Hg was detected as Me 202 Hg after only 1 day. These results indicate that new inorganic Hg in atmospheric deposition can be readily methylated and transported lakeward by shallow groundwater flow, confirming the important role of wetlands as contributors of Hg to aquatic ecosystems.

Water Resources Research↗

The annual cycles of phytoplankton biomass

Terrestrial plants are powerful climate sentinels because their annual cycles of growth, reproduction and senescence are finely tuned to the annual climate cycle having a period of one year. Consistency in the seasonal phasing of terrestrial plant activity provides a relatively low-noise background from which phenological shifts can be detected and attributed to climate change. Here, we ask whether phytoplankton biomass also fluctuates over a consistent annual cycle in lake, estuarine-coastal and ocean ecosystems and whether there is a characteristic phenology of phytoplankton as a consistent phase and amplitude of variability. We compiled 125 time series of phytoplankton biomass (chloro-phyll a concentration) from temperate and subtropical zones and used wavelet analysis to extract their dominant periods of variability and the recurrence strength at those periods. Fewer than half (48%) of the series had a dominant 12-month period of variability, commonly expressed as the canonical spring-bloom pattern. About 20 per cent had a dominant six-month period of variability, commonly expressed as the spring and autumn or winter and summer blooms of temperate lakes and oceans. These annual patterns varied in recurrence strength across sites, and did not persist over the full series duration at some sites. About a third of the series had no component of variability at either the six-or 12-month period, reflecting a series of irregular pulses of biomass. These findings show that there is high variability of annual phytoplankton cycles across ecosystems, and that climate-driven annual cycles can be obscured by other drivers of population variability, including human disturbance, aperiodic weather events and strong trophic coupling between phytoplankton and their consumers. Regulation of phytoplankton biomass by multiple processes operating at multiple time scales adds complexity to the challenge of detecting climate-driven trends in aquatic ecosystems where the noise to signal ratio is high.

Philosophical Transactions of the Royal Society B:↗

Effects of forest harvesting on ecosystem health in the headwaters of the New York City Water Supply, Catskill Mountains, New York

The effects of forest clearcutting and selective harvesting on forest soils, soil and stream water chemistry, forest regrowth, and aquatic communities were studied in four small headwater catchments. This research was conducted to identify the sensitivity of forested ecosystems to forest disturbance in the northeastern United States. The study area was in the headwaters of the Neversink Reservoir watershed, part of the New York City water supply system, in the Catskill Mountains of southeastern New York. Two sub-catchments of the Shelter Creek watershed were selectively harvested, one in its northern half and one more heavily in its southern half in 1995?96, the Dry Creek watershed was clearcut in the winter of 1996?97, and the Clear Creek watershed was left undisturbed and monitored as a control site. Monitoring was conducted from 4 years before the harvests until 4 years after the harvests. Clearcutting caused a large release of nitrate (NO3-) from watershed soils and a concurrent release of inorganic monomeric aluminum (Alim), which is toxic to some aquatic biota. The increased soil NO3- concentrations measured after the harvest could be completely accounted for by the decrease in nitrogen (N) uptake by watershed trees, rather than an increase in N mineralization and nitrification. The large increase in stream water NO3- and Alim concentrations caused 100-percent mortality of caged brook trout (Salvelinus fontinalis) during the first year after the clearcut and adversely affected macroinvertebrate communities for 2 years after the harvest. Nutrient uptake and biomass accumulation increased in uncut mature trees after the two selective harvests. There was no increase in stream-water NO3- or Alim concentrations, and so there were no adverse affects on macroinvertebrate or trout communities. The amount of tree biomass that can be removed without causing a sharp increase in stream-water NO3- and Alim stream-water concentrations is unknown, but probably depends on the history of forest-disturbance and acid deposition and the level of soil acidification. Results of this study indicate that macroinvertebrate and brook trout communities were sensitive to clearcutting and that deer browsing may affect water quality by suppressing forest regeneration and nutrient uptake. Further studies of selective harvests could identify the harvesting threshold below which changes in water quality and soil chemistry are minimized, and nutrient retention is maximized, thus reducing the damage that logging can inflict on stream and aquatic communities.

New York↗

An updated conceptual model of Delta Smelt biology: Our evolving understanding of an estuarine fish

The main purpose of this report is to provide an up-to-date assessment and conceptual model of factors affecting Delta Smelt (Hypomesus transpacificus) throughout its primarily annual life cycle and to demonstrate how this conceptual model can be used for scientific and management purposes. The Delta Smelt is a small estuarine fish that only occurs in the San Francisco Estuary. Once abundant, it is now rare and has been protected under the federal and California Endangered Species Acts since 1993. The Delta Smelt listing was related to a step decline in the early 1980s; however, population abundance decreased even further with the onset of the “pelagic organism decline” (POD) around 2002. A substantial, albeit short-lived, increase in abundance of all life stages in 2011 showed that the Delta Smelt population can still rebound when conditions are favorable for spawning, growth, and survival. In this report, we update previous conceptual models for Delta Smelt to reflect new data and information since the release of the last synthesis report about the POD by the Interagency Ecological Program for the San Francisco Estuary (IEP) in 2010. Specific objectives include: 1. Provide decision makers with a practical tool for evaluating difficult trade-offs associated with management and policy decisions. 2. Provide scientists with a framework from which they can formulate and evaluate hypotheses using qualitative or quantitative models. 3. Provide the general public with a new way of learning about Delta Smelt and their habitat. Our updated conceptual model describes the habitat conditions and ecosystem drivers affecting each Delta Smelt life stage, across seasons and how the seasonal effects contribute to the annual success of the species. The conceptual model consists of two nested and linked levels of increasing specificity. The general life cycle conceptual model for four Delta Smelt life stages (adults, eggs and larvae, juveniles, and subadults) includes stationary ecosystem components and dynamic environmental drivers, habitat attributes, and Delta Smelt responses. The more detailed life stage transition conceptual models for each of the four Delta Smelt life stages describe relationships between environmental drivers, key habitat attributes, and the responses of Delta Smelt to habitat attributes as they transition from one life stage to the next. Our analyses and conceptual model show that good larval recruitment is essential for setting the stage for a strong year class; however, increased growth and survival through subsequent life stages are also needed to achieve and sustain higher population abundance. We used our conceptual model to generate 16 hypotheses about the factors that may have contributed to the 2011 increase in Delta Smelt relative abundance. We then evaluated these hypotheses by comparing habitat conditions and Delta Smelt responses in the wet year 2011 to those in the prior wet year 2006 and in the drier years 2005 and 2010. Larval recruitment was similarly high in both wet years and lower in the drier antecedent years, but juvenile and adult abundance increased only in 2011. In 2005 and 2006, the population was limited by very poor survival from the larval to the juvenile life stage. We found that in 2011, Delta Smelt may have benefitted from a combination of favorable habitat conditions throughout the year, including: 1. Adults and larvae benefitted from prolonged cool spring water temperatures, high 2011 winter and spring outflows which reduced entrainment risk and possibly improved other habitat conditions, and possibly enhanced food availability in late spring. 2. Juveniles benefitted from cool water temperatures in late spring and early summer as well as from improved food availability and low levels of harmful Microcystis. 3. Subadults also benefitted from improved food availability and from favorable habitat conditions in the large, low salinity zone (salinity 1-6) located more toward Suisun Bay,

California↗

The burning of biocrusts facilitates the emergence of a bare soil community of poorly-connected chemoheterotrophic bacteria with depressed ecosystem services

Wildfires destabilize biocrust, requiring decades for most biological constituents to regenerate, but bacteria may recover quickly and mitigate the detrimental consequences of burnt soils. To evaluate the short-term recovery of biocrust bacteria, we tracked shifts in bacterial community form and function in Cyanobacteria/lichen-dominated (shrub interspaces) and Cyanobacteria/moss-dominated (beneath Artemisia tridentata ) biocrusts 1 week, 2 months, and 1 year following a large-scale burn manipulations in a cold desert (Utah, USA). We found no evidence of the burned bacterial community recovering to a burgeoning biocrust. The foundational biocrust phyla, Cyanobacteria, dominated by Microcoleus viginatus (Microcoleaceae), disappeared from burned soils creating communities void of photosynthetic taxa. One year after the fire, the burned biocrust constituents had eroded away and the bare soils supported the formation of a convergent community of chemoheterotrophic copiotrophs regardless of location. The emergent community was dominated by a previously rare Planococcus species (family Planococcaceae, Firmicutes) and taxa in the Cellulomonadaceae (Actinobacteria), and Oxalobacteraceae (Betaproteobacteria). Previously burnt soils maintained similar levels of bacterial biomass, alpha diversity, and richness as unburned biocrusts, but supported diffuse, poorly-interconnected communities with 75% fewer species interactions. Nitrogen fixation declined at least 3.5-fold in the burnt soils but ammonium concentrations continued to rise through the year, suggesting that the exhaustion of organic C released from the fire, and not N, may diminish the longevity of the emergent community. Our results demonstrate that biocrust bacteria may recover rapidly after burning, albeit along a different community trajectory, as rare bacteria become dominant, species interconnectedness diminishes, and ecosystem services fail to rebound.

Frontiers in Ecology and Evolution↗

Antecedent climatic conditions spanning several years influence multiple land-surface phenology events in semi-arid environments

Ecological processes are complex, often exhibiting non-linear, interactive, or hierarchical relationships. Furthermore, models identifying drivers of phenology are constrained by uncertainty regarding predictors, interactions across scales, and legacy impacts of prior climate conditions. Nonetheless, measuring and modeling ecosystem processes such as phenology remains critical for management of ecological systems and the social systems they support. We used random forest models to assess which combination of climate, location, edaphic, vegetation composition, and disturbance variables best predict several phenological responses in three dominant land cover types in the U.S. Northwestern Great Plains (NWP). We derived phenological measures from the 25-year series of AVHRR satellite data and characterized climatic predictors (i.e., multiple moisture and/or temperature based variables) over seasonal and annual timeframes within the current year and up to 4 years prior. We found that antecedent conditions, from seasons to years before the current, were strongly associated with phenological measures, apparently mediating the responses of communities to current-year conditions. For example, at least one measure of antecedent-moisture availability [precipitation or vapor pressure deficit (VPD)] over multiple years was a key predictor of all productivity measures. Variables including longer-term lags or prior year sums, such as multi-year-cumulative moisture conditions of maximum VPD, were top predictors for start of season. Productivity measures were also associated with contextual variables such as soil characteristics and vegetation composition. Phenology is a key process that profoundly affects organism-environment relationships, spatio-temporal patterns in ecosystem structure and function, and other ecosystem dynamics. Phenology, however, is complex, and is mediated by lagged effects, interactions, and a diversity of potential drivers; nonetheless, the incorporation of antecedent conditions and contextual variables can improve models of phenology.

Idaho, Montana, Nebraska, North Dakota, South Dako↗

Human impact on the planet: an earth system science perspective and ethical considerations

The modern Earth Narrative, the scientific story of the 4.5 billion-year natural and human history of the Earth, has emerged from the solid foundation of two factual concepts: Deep (or Geologic) Time and Biological Evolution. spread acceptance of the Earth Narrative is critically important as we begin the third millennium, because it provides a clear understanding of the growing impact of human population growth and associated activities on the Earth System, especially the negative impact on Earth?s biosphere. It is important for humans to realize that we are but one of 4,500 species of mammals that exist on Earth and that we are but one species in the estimated 30 to 100 million species that form the complex biosphere. We also need to recognize that all species exist within the physical limits imposed by the geosphere. We are totally dependent on the biosphere for food, oxygen, and other necessities of life. mans are one of the latest results of biological evolution operating over a long period of Geologic Time. We find ourselves on Earth, after 4.5 billion years of Earth history by chance, not by design. Humans have become so successful at modifying their environment that many of the natural limitations on the expansion of populations of our fellow animals have been overcome by technological and cultural innovations. According to Peter Raven, ?Humans, at a current population of 6 billion [expected to nearly double by 2050], are consuming or wasting about 50 percent of the total net biological productivity on land and 50 percent of the available supply of freshwater. The overwhelming and expanding human presence leaves less and less room in the environment for other biota.? st century will be a pivotal time in the fate of Earth?s biosphere. Whereas human modification of the geosphere will slowly recover over time, human changes to the biosphere are a far more consequential matter? extinction of a species is forever! Will humans effectively use our new knowledge of natural and human history to stop further degradation of Earth?s ecosystems and extinction of its biota? The fate of the biosphere, including humanity, depends on a reaffirmation by all humans of all cultures and religions of the global importance of a planet-wide conservation of the Earth?s biotic heritage. For the world?s religions it means elevation of stewardship of the Earth to a moral imperative and a goal of complete preservation of the Earth?s biotic inheritance, one which is based on a Do No Harm ethic.

Open-File Report↗

High parasite diversity in the amphipod Gammarus lacustris in a subarctic lake

Amphipods are often key species in aquatic food webs due to their functional roles in the ecosystem and as intermediate hosts for trophically transmitted parasites. Amphipods can also host many parasite species, yet few studies address the entire parasite community of a gammarid population, precluding a more dynamic understanding of the food web. We set out to identify and quantify the parasite community of Gammarus lacustris to understand the contributions of the amphipod and its parasites to the Takvatn food web. We identified seven parasite taxa: a direct life cycle gregarine, Rotundula sp., and larval stages of two digenean trematode genera, two cestodes, one nematode, and one acanthocephalan. The larval parasites use either birds or fishes as final hosts. Bird parasites predominated, with trematode Plagiorchis sp. having the highest prevalence (69%) and mean abundance (2.7). Fish parasites were also common, including trematodes Crepidostomum spp., nematode Cystidicola farionis , and cestode Cyathocephalus truncatus (prevalences 13, 6, and 3%, respectively). Five parasites depend entirely on G. lacustris to complete their life cycle. At least 11.4% of the overall parasite diversity in the lake was dependent on G. lacustris , and 16% of the helminth diversity required or used the amphipod in their life cycles. These dependencies reveal that in addition to being a key prey item in subarctic lakes, G. lacustris is also an important host for maintaining parasite diversity in such ecosystems.

Takvatn↗

Fire regime shift reveals 17th century socio-ecological change in the Rio Grande del Norte National Monument, New Mexico

Humans have influenced ecosystems for millennia, and social changes can have notable ecological effects. Recent human influence on ecosystems is exemplified by the collapse of fire regimes circa 1900 in the western United States due to increased grazing, fire suppression, and declining Indigenous fire use. Climate can also drive fire regime changes, which is reflected by increasing area burned across the West in recent decades associated with warming and increased aridity. In the southwestern United States during the mid-1600s, large social changes accompanied Spanish colonization. These changes included increases in domestic livestock (e.g., sheep and horses), declines of Indigenous populations and cultural burning, and exploitation of Puebloans that led to the 1680 Pueblo Revolt, an Indigenous uprising that expelled Spanish colonizers for 12 years. The ecological effects of these large social changes are not well studied. The goal of this study was to use tree-ring fire histories to investigate fire dynamics of a sagebrush-dominated landscape in the Rio Grande del Norte National Monument (RGDN) in northern New Mexico, including the effects of historical social and climatic changes. We reconstructed fire history on four forested mountains that rise above the sagebrush/grass plateau. We asked: (1) What was the pre-1900 fire frequency, season, and fire–climate relationship in the RGDN? (2) Was there evidence for fire spread in the sagebrush/grass flats between the mountains? and (3) Did regional social or climate changes influence fire regimes? From 1400 to 1679, we found frequent fire within forests (8–12-year median fire intervals [mfi]) and potential evidence of spreading fire through the sagebrush/grass ecosystem based on greater-than-expected intermountain fire synchrony. However, beginning in the mid-1600s and continuing after the Pueblo Revolt of 1680, there was (1) a significant decline in fire frequency, including 38–166-year mfi and no fire for >350 years at two sites; and (2) only one synchronous fire between mountains. During this 17th century period of socio-ecological change there was no persistent shift in climate. We propose that reduced Indigenous ignitions and increased domestic grazing, which reduced herbaceous fuels and fire spread, are likely causes of the extraordinary early and persistent reduction in fire.

New Mexico↗

Management intensity alters decomposition via biological pathways

Current conceptual models predict that changes in plant litter chemistry during decomposition are primarily regulated by both initial litter chemistry and the stage-or extent-of mass loss. Far less is known about how variations in decomposer community structure (e.g., resulting from different ecosystem management types) could influence litter chemistry during decomposition. Given the recent agricultural intensification occurring globally and the importance of litter chemistry in regulating soil organic matter storage, our objectives were to determine the potential effects of agricultural management on plant litter chemistry and decomposition rates, and to investigate possible links between ecosystem management, litter chemistry and decomposition, and decomposer community composition and activity. We measured decomposition rates, changes in litter chemistry, extracellular enzyme activity, microarthropod communities, and bacterial versus fungal relative abundance in replicated conventional-till, no-till, and old field agricultural sites for both corn and grass litter. After one growing season, litter decomposition under conventional-till was 20% greater than in old field communities. However, decomposition rates in no-till were not significantly different from those in old field or conventional-till sites. After decomposition, grass residue in both conventional- and no-till systems was enriched in total polysaccharides relative to initial litter, while grass litter decomposed in old fields was enriched in nitrogen-bearing compounds and lipids. These differences corresponded with differences in decomposer communities, which also exhibited strong responses to both litter and management type. Overall, our results indicate that agricultural intensification can increase litter decomposition rates, alter decomposer communities, and influence litter chemistry in ways that could have important and long-term effects on soil organic matter dynamics. We suggest that future efforts to more accurately predict soil carbon dynamics under different management regimes may need to explicitly consider how changes in litter chemistry during decomposition are influenced by the specific metabolic capabilities of the extant decomposer communities.

Biogeochemistry↗

Evaluating the potential role of bioactive chemicals on the distribution of invasive Asian carp upstream and downstream from river mile 278 in the Illinois waterway

Two non-native carp species have invaded the Illinois Waterway and are a threat to Great Lakes ecosystems. Poor water quality in the upper Illinois Waterway, may be a factor contributing to the stalling of the carp population front near river mile 278. In 2015, the U.S. Geological Survey collected 4 sets of water samples from two sites upstream and 4 sites downstream from river mile 278, and one tributary. Each sample was analyzed for up to 649 unique parameters of which 287 were detected including 96 pesticides, 62 pharmaceuticals, 39 wastewater indicator compounds, 29 metals, 19 volatile organic compounds (VOCs), six disinfection by-products (DBPs), five hormones, and five carboxylic acids. Potential for bioactivity was estimated by comparing chemical concentrations to aquatic life or human health criteria and to in-vitro bioactivity screening results in the U.S EPA ToxCast™ database. The resulting hazard quotients and exposure-activity ratios (EARs) are toxicity indexes, that can be used to rank potential bioactivity of individual chemicals and chemical mixtures. This analysis indicates that several bioactive chemicals (BCs) including: carbendazim, 2,4-D, metolachlor, terbuthylazine, and acetochlor (pesticides); 1,4-dioxane (VOC); metformin, diphenhydramine, sulfamethoxazole, tramadol, fexofenadine, and the anti-depressants (pharmaceuticals); bisphenol A, 4-nonylphenol, galaxolide, 4-tert-octylphenol (wastewater indicator chemical); lead and boron (metals); and estrone (hormone) all occur in the upper Illinois Waterway at concentrations that produce elevated EARs values and may be adversely affecting carp reproduction and health. The clear differences in water quality upstream and downstream from river mile 278 with higher contaminant concentrations and potential bioactivity upstream could represent a barrier to carp range expansion.

Illinois↗