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Hydraulic modeling development and application in water resources engineering

The use of modeling has become widespread in water resources engineering and science to study rivers, lakes, estuaries, and coastal regions. For example, computer models are commonly used to forecast anthropogenic effects on the environment, and to help provide advanced mitigation measures against catastrophic events such as natural and dam-break floods. Linking hydraulic models to vegetation and habitat models has expanded their use in multidisciplinary applications to the riparian corridor. Implementation of these models in software packages on personal desktop computers has made them accessible to the general engineering community, and their use has been popularized by the need of minimal training due to intuitive graphical user interface front ends. Models are, however, complex and nontrivial, to the extent that even common terminology is sometimes ambiguous and often applied incorrectly. In fact, many efforts are currently under way in order to standardize terminology and offer guidelines for good practice, but none has yet reached unanimous acceptance. This chapter provides a view of the elements involved in modeling surface flows for the application in environmental water resources engineering. It presents the concepts and steps necessary for rational model development and use by starting with the exploration of the ideas involved in defining a model. Tangible form of those ideas is provided by the development of a mathematical and corresponding numerical hydraulic model, which is given with a substantial amount of detail. The issues of model deployment in a practical and productive work environment are also addressed. The chapter ends by presenting a few model applications highlighting the need for good quality control in model validation.

Book chapter↗

Geochemistry of ground water

The science of geochemistry is the study of the chemical composition of and actual or possible chemical changes in the crust of the earth. The subdivision of geochemistry concerned with ground water includes study of the nature and amounts of dissolved mineral matter in ground waters, the chemical and geologic changes that influence the kinds and amounts of substances carried in solution, and the chemical relationships between dissolved mineral matter in waters and minerals that make up the rocks in which the waters occur. As . thus defined, the field of geochemistry of ground water is very large. Although much work has been done in geochemistry in general, and in some phases of the geochemistry of ground water, the field remains to a large extent unexplored.

Economic Geology↗

The green alga, Cladophora, promotes Escherichia coli growth and contamination of recreational waters in Lake Michigan

A linkage between Cladophora mats and exceedances of recreational water quality criteria has been suggested, but not directly studied. Th is study investigates the spatial and temporal association between Escherichia coli concentrations within and near Cladophora mats at two northwestern Lake Michigan beaches in Door County, Wisconsin. Escherichia coli concentrations in water underlying mats were significantly greater than surrounding water (p < 0.001). Below mat E. coli increased as the stranded mats persisted at the beach swash zone. Water adjacent to Cladophora mats had lower E. coli concentrations, but surpassed EPA swimming criteria the majority of sampling days. A signifi cant positive association was found between E. coli concentrations attached to Cladophora and in underlying water (p < 0.001). The attached E. coli likely acted as a reservoir for populating water underlying the mat. Fecal bacterial pathogens, however, could not be detected by microbiological culture methods either attached to mat biomass or in underlying water. Removal of Cladophora mats from beach areas may improve aesthetic and microbial water quality at affected beaches. These associations and potential natural growth of E. coli in bathing waters call into question the efficacy of using E. coli as a recreational water quality indicator of fecal contaminations. Copyright ?? 2010 by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America. All rights reserved.

Journal of Environmental Quality↗

Reducing risk where tectonic plates collide

Most of the world’s earthquakes, tsunamis, landslides, and volcanic eruptions are caused by the continuous motions of the many tectonic plates that make up the Earth’s outer shell. The most powerful of these natural hazards occur in subduction zones, where two plates collide and one is thrust beneath another. The U.S. Geological Survey’s (USGS) “Reducing Risk Where Tectonic Plates Collide—A USGS Plan to Advance Subduction Zone Science” is a blueprint for building the crucial scientific foundation needed to inform the policies and practices that can make our Nation more resilient to subduction zone-related hazards.

Fact Sheet↗

Report from the workshop on climate downscaling and its application in high Hawaiian Islands, September 16–17, 2015

In the subtropical and tropical Pacific islands, changing climate is predicted to influence precipitation and freshwater availability, and thus is predicted to impact ecosystems goods and services available to ecosystems and human communities. The small size of high Hawaiian Islands, plus their complex microlandscapes, require downscaling of global climate models to provide future projections of greater skill and spatial resolution. Two different climate modeling approaches (physics-based dynamical downscaling and statistics-based downscaling) have produced dissimilar projections. Because of these disparities, natural resource managers and decision makers have low confidence in using the modeling results and are therefore are unwilling to include climate-related projections in their decisions. In September 2015, the Pacific Islands Climate Science Center (PICSC), the Pacific Islands Climate Change Cooperative (PICCC), and the Pacific Regional Integrated Sciences and Assessments (Pacific RISA) program convened a 2-day facilitated workshop in which the two modeling teams, plus key model users and resource managers, were brought together for a comparison of the two approaches, culminating with a discussion of how to provide predictions that are useable by resource managers. The proceedings, discussions, and outcomes of this Workshop are summarized in this Open-File Report.

Hawaii↗

Environmental chemical data for perishable sediments and soils collected in New Orleans, Louisiana, and along the Louisiana Delta following Hurricanes Katrina and Rita, 2005

In October 2005, nearly one month after Hurricanes Katrina and Rita, a team of scientists from the U.S. Geological Survey and the Missouri University of Science and Technology deployed to southern Louisiana to collect perishable environmental data resulting from the impacts of these storms. Perishable samples collected for this investigation are subject to destruction or ruin by removal, mixing, or natural decay; therefore, collection is time-critical following the depositional event. A total of 238 samples of sediment, soil, and vegetation were collected to characterize chemical quality. For this analysis, 157 of the 238 samples were used to characterize trace element, iron, total organic carbon, pesticide, and polychlorinated biphenyl concentrations of deposited sediment and associated shallow soils. In decreasing order, the largest variability in trace element concentration was detected for lead, vanadium, chromium, copper, arsenic, cadmium, and mercury. Lead was determined to be the trace element of most concern because of the large concentrations present in the samples ranging from 4.50 to 551 milligrams per kilogram (mg/kg). Sequential extraction analysis of lead indicate that 39.1 percent of the total lead concentration in post-hurricane sediment is associated with the iron-manganese oxide fraction. This fraction is considered extremely mobile under reducing environmental conditions, thereby making lead a potential health hazard. The presence of lead in post-hurricane sediments likely is from redistribution of pre-hurricane contaminated soils and sediments from Lake Pontchartrain and the flood control canals of New Orleans. Arsenic concentrations ranged from 0.84 to 49.1 mg/kg. Although Arsenic concentrations generally were small and consistent with other research results, all samples exceeded the U.S. Environmental Protection Agency’s Human Health Medium-Specific Screening Level of 0.39 mg/kg. Mercury concentrations ranged from 0.02 to 1.30 mg/kg. Comparing the mean mercury concentration present in post-hurricane samples with regional background data from the U.S. Geological Survey National Geochemical Dataset, indicates that mercury concentrations in post-hurricane sediment generally are larger. Sequential extraction analysis of 51 samples for arsenic indicate that 54.5 percent of the total arsenic concentration is contained in the extremely mobile iron-manganese oxide fraction. Pesticide and polychlorinated biphenyl Arochlor concentrations in post-hurricane samples were small. Prometon was the most frequently detected pesticide with concentrations ranging from 2.4 to 193 micrograms per kilogram (µg/kg). Methoxychlor was present in 22 samples with a concentration ranging from 3.5 to 3,510 µg/kg. Although methoxychlor had the largest detected pesticide concentration, it was well below the U.S. Environmental Protection Agency’s High-Priority Screening Level for residential soils. Arochlor congeners were not detected for any sample above the minimum detection level of 7.9 µg/kg.

Louisiana↗

Analytical group decision making in natural resources: Methodology and application

Group decision making is becoming increasingly important in natural resource management and associated scientific applications, because multiple values are treated coincidentally in time and space, multiple resource specialists are needed, and multiple stakeholders must be included in the decision process. Decades of social science research on decision making in groups have provided insights into the impediments to effective group processes and on techniques that can be applied in a group context. Nevertheless, little integration and few applications of these results have occurred in resource management decision processes, where formal groups are integral, either directly or indirectly. A group decision-making methodology is introduced as an effective approach for temporary, formal groups (e.g., workshops). It combines the following three components: (1) brainstorming to generate ideas; (2) the analytic hierarchy process to produce judgments, manage conflict, enable consensus, and plan for implementation; and (3) a discussion template (straw document). Resulting numerical assessments of alternative decision priorities can be analyzed statistically to indicate where group member agreement occurs and where priority values are significantly different. An application of this group process to fire research program development in a workshop setting indicates that the process helps focus group deliberations; mitigates groupthink, nondecision, and social loafing pitfalls; encourages individual interaction; identifies irrational judgments; and provides a large amount of useful quantitative information about group preferences. This approach can help facilitate scientific assessments and other decision-making processes in resource management.

Forest Science↗

Prospects and limitations of citizen science in invasive species management: A case study with Burmese pythons in Everglades National Park

Citizen-science programs have the potential to contribute to the management of invasive species, including Python molurus bivittatus (Burmese Python) in Florida. We characterized citizen-science–generated Burmese Python information from Everglades National Park (ENP) to explore how citizen science may be useful in this effort. As an initial step, we compiled and summarized records of Burmese Python observations and removals collected by both professional and citizen scientists in ENP during 2000–2014 and found many patterns of possible significance, including changes in annual observations and in demographic composition after a cold event. These patterns are difficult to confidently interpret because the records lack search-effort information, however, and differences among years may result from differences in search effort. We began collecting search-effort information in 2014 by leveraging an ongoing citizen-science program in ENP. Program participation was generally low, with most authorized participants in 2014 not searching for the snakes at all. We discuss the possible explanations for low participation, especially how the low likelihood of observing pythons weakens incentives to search. The monthly rate of Burmese Python observations for 2014 averaged ~1 observation for every 8 h of searching, but during several months, the rate was 1 python per >40 h of searching. These low observation-rates are a natural outcome of the snakes’ low detectability—few Burmese Pythons are likely to be observed even if many are present. The general inaccessibility of the southern Florida landscape also severely limits the effectiveness of using visual searches to find and remove pythons for the purposes of population control. Instead, and despite the difficulties in incentivizing voluntary participation, the value of citizen-science efforts in the management of the Burmese Python population is in collecting search-effort information.

Southeastern Naturalist↗

USGS St. Petersburg Coastal and Marine Science Center

Extreme storms, sea-level rise, and the health of marine communities are some of the major societal and environmental issues impacting our Nation's marine and coastal realm. The U.S. Geological Survey (USGS) in St. Petersburg, Fla., investigates processes related to these ecosystems and the societal implications of natural hazards and resource sustainability. As one of three centers nationwide conducting research within the USGS Coastal and Marine Geology Program, the center is integral towards developing an understanding of physical processes that will contribute to rational decisions regarding the use and stewardship of national coastal and marine environments.

Florida↗

Multiscale geophysical imaging of the critical zone

Details of Earth's shallow subsurface—a key component of the critical zone (CZ)—are largely obscured because making direct observations with sufficient density to capture natural characteristic spatial variability in physical properties is difficult. Yet this inaccessible region of the CZ is fundamental to processes that support ecosystems, society, and the environment. Geophysical methods provide a means for remotely examining CZ form and function over length scales that span centimeters to kilometers. Here we present a review highlighting the application of geophysical methods to CZ science research questions. In particular, we consider the application of geophysical methods to map the geometry of structural features such as regolith thickness, lithological boundaries, permafrost extent, snow thickness, or shallow root zones. Combined with knowledge of structure, we discuss how geophysical observations are used to understand CZ processes. Fluxes between snow, surface water, and groundwater affect weathering, groundwater resources, and chemical and nutrient exports to rivers. The exchange of gas between soil and the atmosphere have been studied using geophysical methods in wetland areas. Indirect geophysical methods are a natural and necessary complement to direct observations obtained by drilling or field mapping. Direct measurements should be used to calibrate geophysical estimates, which can then be used to extrapolate interpretations over larger areas or to monitor changing processes over time. Advances in geophysical instrumentation and computational approaches for integrating different types of data have great potential to fill gaps in our understanding of the shallow subsurface portion of the CZ and should be integrated where possible in future CZ research.

Reviews of Geophysics↗

Middle and Late Pleistocene glaciations in the southwestern Pamir and their effects on topography

Glacial chronologies provide insight into the evolution of paleo-landscapes, paleoclimate, topography, and the erosion processes that shape mountain ranges. In the Pamir of Central Asia, glacial morphologies and deposits indicate extensive past glaciations, whose timing and extent remain poorly constrained. Geomorphic data and 15 new 10 Be exposure ages from moraine boulders and roches moutonnées in the southwestern Pamir document multiple Pleistocene glacial stages. The oldest exposure ages, , underestimate the age of the earliest preserved glacial advance and imply that the modern relief of the southwestern Pamir (peaks at ∼5000–6000 m a.s.l.; valleys at ∼2000–3000 m a.s.l.) already existed in the late Middle Pleistocene. Younger exposure ages (∼40–80 ka, ∼30 ka) complement the existing Central Asian glacial chronology and reflect successively less extensive Late Pleistocene glaciations. The topography of the Pamir and the glacial chronologies suggest that, in the Middle Pleistocene, an ice cap or ice field occupied the eastern Pamir high-altitude plateau, whereas westward flowing valley glaciers incised the southwestern Pamir. Since the Late Pleistocene deglaciation, the rivers of the southwestern Pamir adjusted to the glacially shaped landscape. Localized rapid fluvial incision and drainage network reorganization reflect the transient nature of the deglaciated landscape.

Earth and Planetary Science Letters↗

Anaerobic biodegradation of perfluorooctane sulfonate (PFOS) and microbial community composition in soil amended with a dechlorinating culture and chlorinated solvents

Perfluorooctane sulfonate (PFOS), one of the most frequently detected per - and polyfluoroalkyl substances (PFAS) occurring in soil, surface water, and groundwater near sites contaminated with aqueous film-forming foam (AFFF), has proven to be recalcitrant to many destructive remedies, including chemical oxidation. We investigated the potential to utilize microbially mediated reduction (bioreduction) to degrade PFOS and other PFAS through addition of a known dehalogenating culture, WBC-2, to soil obtained from an AFFF-contaminated site. A substantial decrease in total mass of PFOS (soil and water) was observed in microcosms amended with WBC-2 and chlorinated volatile organic compound (cVOC) co-contaminants — 46.4 ± 11.0 % removal of PFOS over the 45-day experiment. In contrast, perfluorooctanoate (PFOA) and 6:2 fluorotelomer sulfonate (6:2 FTS) concentrations did not decrease in the same microcosms. The low or non-detectable concentrations of potential metabolites in full PFAS analyses, including after application of the total oxidizable precursor assay, indicated that defluorination occurred to non-fluorinated compounds or ultrashort-chain PFAS. Nevertheless, additional research on the metabolites and degradation pathways is needed. Population abundances of known dehalorespirers did not change with PFOS removal during the experiment, making their association with PFOS removal unclear. An increased abundance of sulfate reducers in the genus Desulfosporosinus (Firmicutes) and Sulfurospirillum (Campilobacterota) was observed with PFOS removal, most likely linked to initiation of biodegradation by desulfonation. These results have important implications for development of in situ bioremediation methods for PFAS and advancing knowledge of natural attenuation processes.

Science of the Total Environment↗

Behavior of pollutant-degrading microorganisms in aquifers: Predictions for genetically engineered organisms

Bioremediation via environmental introductions of degradative microorganisms requires that the microbes survive in substantial numbers and effect an increase in the rate and extent of pollutant removal. Combined field and microcosm studies were used to assess these abilities for laboratory-grown bacteria. Following introduction into a contaminated aquifer, viable cells of Pseudomonas sp. B13 were present in the contaminant plume for 447 days; die-off was rapid in pristine areas. In aquifer microcosms, survival of B13 and FR120, a genetically engineered derivative of B13 having enhanced catabolic capabilities for substituted aromatics, was comparable to B13 field results; both bacteria degraded target pollutants in microcosms made with aquifer samples from the aerobic zone of the pollutant plume. Results suggest that field studies with nonrecombinant microorganisms may be coupled to laboratory studies with derivative strains to estimate their bioremediative efficacy. Furthermore, laboratory strains of bacteria can survive for extended periods of time in nature and thus may have important bioremediative applications.

Environmental Science & Technology↗

Geological Surveys unite to improve critical mineral security

The global economy is unprepared to meet the exploding demand for critical minerals. These materials, many of which were of little economic interest until recently, are required to fuel a proliferation of technologies and industries that have become vital for social and economic well-being the world over. But supplies of critical minerals are at risk because of their natural scarcity and because of geopolitical issues and trade policies that complicate their distribution, among other factors.

Eos Science News↗

Geographic patterns of fishes and jellyfish in Puget Sound surface waters

We explored patterns of small pelagic fish assemblages and biomass of gelatinous zooplankton (jellyfish) in surface waters across four oceanographic subbasins of greater Puget Sound. Our study is the first to collect data documenting biomass of small pelagic fishes and jellyfish throughout Puget Sound; sampling was conducted opportunistically as part of a juvenile salmon survey of daytime monthly surface trawls at 52 sites during May–August 2003. Biomass composition differed spatially and temporally, but spatial differences were more distinct. Fish dominated in the two northern basins of Puget Sound, whereas jellyfish dominated in the two southern basins. Absolute and relative abundance of jellyfish, hatchery Chinook salmon Oncorhynchus tshawytscha , and chum salmon O. keta decreased with increasing latitude, whereas the absolute and relative abundance of most fish species and the average fish species richness increased with latitude. The abiotic factors with the strongest relationship to biomass composition were latitude, water clarity, and sampling date. Further study is needed to understand the spatial and temporal heterogeneity in the taxonomic composition we observed in Puget Sound surface waters, especially as they relate to natural and anthropogenic influences.

Marine and Coastal Fisheries: Dynamics, Management↗

Herpetic keratoconjunctivitis: Therapy with synthetic double-stranded RNA

A study was undertaken in rabbits to determine how late in the course of keratoconjunctivitis caused by herpes simplex recovery could be effected by an inducer of interferon. Interferon was induced by means of synthetic double-stranded RNA copolymer formed with polynosinic acid: polycytidilic acid RNA. Therapy promotes recovery from severe and fully established keratoconjunctivitis for which treatment was begun as late as 3 days after virus inoculation. No drug toxicity was observed in the therapeutic dose range. These findings further support the proposed role of the interferon mechanism in the natural recovery of already established viral infection. They also suggest the usefulness of interferon inducers in viral infections of man.

Science↗