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At least 901 records · Page 50Linked to original sources
USGS2020

Lesser prairie-chicken (Tympanuchus pallidicinctus) use of man-made water sources

The lesser prairie-chicken ( Tympanuchus pallidicinctus ) occurs in the semiarid southern Great Plains, a region prone to periods of drought. Researchers generally believe that lesser prairie-chickens are able to satisfy their water requirements through preformed water and metabolic processes, but also know that they experience low survival and reproductive success during periods of drought. We used motion-sensing cameras to assess lesser prairie-chicken visits to man-made free water sources over a 48-month period from March 2009 to February 2013 in west Texas. Our objective was to examine temporal patterns of water use by lesser prairie-chickens, and to explore life history phenology and environmental conditions that may influence the species' use of free water. We documented 1,439 visits to water sources by lesser prairie-chickens. Their use of water sources was high during the winter months (December–February; 92 visits per 100 trap days) but the highest average visit rate to water sources occurred during the lekking-nesting life stage (March–May; 146 visits per 100 trap days). Water use was lower during the brood-rearing stage (June–August; 71 visits per 100 trap days) and lowest during the brood dispersal and independence stage (September–November; 19 visits per 100 trap days). Water use was strongly associated with dew point (P < 0.0001) and temperature (P = 0.0002) but was not associated with precipitation (P = 0.1037). These data indicate life-cycle stage (e.g., lekking-nesting) and reduced availability of preformed water may influence use of free water sources by lesser prairie-chickens. Current climate models predict the region of the study area will experience increases in temperature and decreases in frequency of precipitation. The combined effect of this would be reduced environmental moisture. If the prediction of increasing aridity in the region holds true, man-made water sources may become a tool for conservation of the species.

Texas↗
USGS2012

An algal model for predicting attainment of tiered biological criteria of Maine's streams and rivers

State water-quality professionals developing new biological assessment methods often have difficulty relating assessment results to narrative criteria in water-quality standards. An alternative to selecting index thresholds arbitrarily is to include the Biological Condition Gradient (BCG) in the development of the assessment method. The BCG describes tiers of biological community condition to help identify and communicate the position of a water body along a gradient of water quality ranging from natural to degraded. Although originally developed for fish and macroinvertebrate communities of streams and rivers, the BCG is easily adapted to other habitats and taxonomic groups. We developed a discriminant analysis model with stream algal data to predict attainment of tiered aquatic-life uses in Maine's water-quality standards. We modified the BCG framework for Maine stream algae, related the BCG tiers to Maine's tiered aquatic-life uses, and identified appropriate algal metrics for describing BCG tiers. Using a modified Delphi method, 5 aquatic biologists independently evaluated algal community metrics for 230 samples from streams and rivers across the state and assigned a BCG tier (1–6) and Maine water quality class (AA/A, B, C, nonattainment of any class) to each sample. We used minimally disturbed reference sites to approximate natural conditions (Tier 1). Biologist class assignments were unanimous for 53% of samples, and 42% of samples differed by 1 class. The biologists debated and developed consensus class assignments. A linear discriminant model built to replicate a priori class assignments correctly classified 95% of 150 samples in the model training set and 91% of 80 samples in the model validation set. Locally derived metrics based on BCG taxon tolerance groupings (e.g., sensitive, intermediate, tolerant) were more effective than were metrics developed in other regions. Adding the algal discriminant model to Maine's existing macroinvertebrate discriminant model will broaden detection of biological impairment and further diagnose sources of impairment. The algal discriminant model is specific to Maine, but our approach of explicitly tying an assessment tool to tiered aquatic-life goals is widely transferrable to other regions, taxonomic groups, and waterbody types.

Freshwater Science↗
USGS2021

Using growth rates to estimate the minimum age and size at sexual maturity in a captive population of the critically endangered Central American river turtle Dermatemys mawii

The Central American river turtle Dermatemys mawii is a critically endangered species that has incurred substantial losses over the last several decades due to overhunting. This species is now being considered for head-starting programs (i.e. captive breeding of turtles for wild release). However, relatively little is known about their life history characteristics, especially with respect to growth and sexual maturation. A robust knowledge of D. mawii life history traits is important in developing conservation management plans. Our research is the first known study to maintain hatchlings, juveniles, and adults in captivity with regular morphometric data collection. We quantified growth rates (cm yr-1) and calculated growth parameters (e.g. growth coefficients) to estimate body size and age at onset of sexual maturity in a group of wild-caught but captive-held and captive-bred D. mawii in Belize. Sizes at the onset of sexual maturity were inferred by segmented linear regressions that identified changes in growth rate by body size. Asymptotic sizes and growth coefficients were calculated using the Fabens method and the Wang method. Parameters from these models were then applied to a modified von Bertalanffy growth equation to estimate age at the onset of sexual maturity. Male and female D. mawii begin sexual maturation at ca. 38.0 cm and 40.0 cm straight-line carapace length, respectively. We estimated ages associated with these sizes at 13.5-16.9 yrs (males) and 13.6-17.3 yrs (females). No previous literature on growth rates or age at maturation for wild or captive D. mawii has been reported, so our results serve as a starting point in conservation management. Given the life history trait of delayed sexual maturity (>10 years), D. mawii may be more sensitive to losses of the adult population. Therefore, the importance of captive breeding and head-starting programs may be concomitant with protecting wild, adult populations.

Toledo↗
USGS2001

Conserving large-river fishes: Is the highway analogy an appropriate paradigm?

A tenet of the flood pulse concept, the highway analogy, states that the main channel of large floodplain rivers is used by fishes mainly as a route for gaining access to floodplain habitats. We examined this proposition by analyzing habitat use for freshwater fishes in 4 large rivers in the United States (Colorado, Columbia, Mississippi, Missouri) and 4 in Europe (Danube, Rhine, Rhône, Volga). Fish species from floodplain segments of each river were classified as fluvial specialist, fluvial dependent, and macrohabitat generalist based on literature and expert opinion. We also summarized the proportion of imperiled and introduced fishes present in each of these categories. The high proportion (mean ± 1 SD = 29 ± 17.5%) of fluvial specialist fishes inhabiting north-temperate large rivers was inconsistent with the highway analogy. Most members of the families Petromyzontidae, Acipenseridae, Hiodontidae, Osmeridae, Salmonidae, and Gobiidae require flowing water during some life stage. Between 29 and 100% of the native fish assemblage was of conservation concern, and from 50 to 85% of these fishes required riverine habitats to complete their life cycles. Macrohabitat generalists are adapted to capitalize on floodplain habitats and composed from 44 to 96% of introduced fishes in the rivers studied. Habitat diversity inherent in main-channel complexes of unaltered large rivers and reestablished in regulated large rivers is essential to meet life-history needs of native fluvial fishes while discouraging expansion of introduced species. Restoration of north-temperate large rivers and their native fish fauna should incorporate the dynamic interplay among main channel, floodplain, and tributary habitats and processes.

Colorado River, Columbia River, Danube River, Miss↗
USGS2004

Chapter G: Tentative Correlation Between CIPW Normin pl (Total Plagioclase) and Los Angeles Wear in Precambrian Midcontinental Granites-Examples from Missouri and Oklahoma, with Applications and Limitations for Use

The normative chemical classification of Cross, Iddings, Pirsson, and Washington (CIPW) is commonly used in igneous petrology to distinguish igneous rocks by comparing their magmatic chemistries for similar and dissimilar components. A potential use for this classification other than in petrologic studies is in the rapid assessment of aggregate sources, possibly leading to an economic advantage for an aggregate producer or user, by providing the opportunity to determine whether further physical testing of an aggregate is warranted before its use in asphalt or concrete pavement. However, the CIPW classification currently should not be substituted for the physical testing required in specifications by State departments of transportation. Demands for physical testing of aggregates have increased nationally as users seek to maximize the quality of the aggregate they purchase for their pavements. Concrete pavements are being laid with increased thicknesses to withstand increasing highway loads. New pavement mixes, most notably Superior Performance Asphalt Pavement ('Superpave'), are designed for additional service life. For both concrete and asphalt, the intent is to generate a durable pavement with a longer service life that should decrease overall life-cycle costs. Numerous aggregate producers possess chemical-composition data available for examination to answer questions from the potential user. State geological surveys also possess chemical-composition data for stone sources. Paired with the results of physical testing, chemical- composition data provide indicative information about stone durability and aggregate strength. The Missouri Department of Transportation has noted a possible relation among coarse-grained Precambrian granites of the midcontinental region, correlating the results of abrasion testing with the contents of normative minerals, also known as normins, calculated from chemical composition data. Thus, normin pl ( total plagioclase) can predict, by way of simple regression, the Los Angeles wear for granite samples collected in Missouri. The results of this abrasion testing were extended to another granite in Oklahoma where normin pl predicted Los Angeles wear to within 0.6 percent. This relation may also exist for granitic rocks outside the Oklahoma-Missouri region, as well as for other igneous-rock types.

Bulletin↗
USGS2005

NOAA-USGS Debris-Flow Warning System - Final Report

Landslides and debris flows cause loss of life and millions of dollars in property damage annually in the United States (National Research Council, 2004). In an effort to reduce loss of life by debris flows, the National Oceanic and Atmospheric Administration's (NOAA) National Weather Service (NWS) and the U.S. Geological Survey (USGS) operated an experimental debris-flow prediction and warning system in the San Francisco Bay area from 1986 to 1995 that relied on forecasts and measurements of precipitation linked to empirical precipitation thresholds to predict the onset of rainfall-triggered debris flows. Since 1995, there have been substantial improvements in quantifying precipitation estimates and forecasts, development of better models for delineating landslide hazards, and advancements in geographic information technology that allow stronger spatial and temporal linkage between precipitation forecasts and hazard models. Unfortunately, there have also been several debris flows that have caused loss of life and property across the United States. Establishment of debris-flow warning systems in areas where linkages between rainfall amounts and debris-flow occurrence have been identified can help mitigate the hazards posed by these types of landslides. Development of a national warning system can help support the NOAA-USGS goal of issuing timely Warnings of potential debris flows to the affected populace and civil authorities on a broader scale. This document presents the findings and recommendations of a joint NOAA-USGS Task Force that assessed the current state-of-the-art in precipitation forecasting and debris-flow hazard-assessment techniques. This report includes an assessment of the science and resources needed to establish a demonstration debris-flow warning project in recently burned areas of southern California and the necessary scientific advancements and resources associated with expanding such a warning system to unburned areas and, possibly, to a national scope.

Circular↗
USGS2016

Developing integrated methods to address complex resource and environmental issues

Introduction This circular provides an overview of selected activities that were conducted within the U.S. Geological Survey (USGS) Integrated Methods Development Project, an interdisciplinary project designed to develop new tools and conduct innovative research requiring integration of geologic, geophysical, geochemical, and remote-sensing expertise. The project was supported by the USGS Mineral Resources Program, and its products and acquired capabilities have broad applications to missions throughout the USGS and beyond. In addressing challenges associated with understanding the location, quantity, and quality of mineral resources, and in investigating the potential environmental consequences of resource development, a number of field and laboratory capabilities and interpretative methodologies evolved from the project that have applications to traditional resource studies as well as to studies related to ecosystem health, human health, disaster and hazard assessment, and planetary science. New or improved tools and research findings developed within the project have been applied to other projects and activities. Specifically, geophysical equipment and techniques have been applied to a variety of traditional and nontraditional mineral- and energy-resource studies, military applications, environmental investigations, and applied research activities that involve climate change, mapping techniques, and monitoring capabilities. Diverse applied geochemistry activities provide a process-level understanding of the mobility, chemical speciation, and bioavailability of elements, particularly metals and metalloids, in a variety of environmental settings. Imaging spectroscopy capabilities maintained and developed within the project have been applied to traditional resource studies as well as to studies related to ecosystem health, human health, disaster assessment, and planetary science. Brief descriptions of capabilities and laboratory facilities and summaries of some applications of project products and research findings are included in this circular. The work helped support the USGS mission to “provide reliable scientific information to describe and understand the Earth; minimize loss of life and property from natural disasters; manage water, biological, energy, and mineral resources; and enhance and protect our quality of life.” Activities within the project include the following: Spanned scales from microscopic to planetary; Demonstrated broad applications across disciplines; Included life-cycle studies of mineral resources; Incorporated specialized areas of expertise in applied geochemistry including mineralogy, hydrogeology, analytical chemistry, aqueous geochemistry, biogeochemistry, microbiology, aquatic toxicology, and public health; and Incorporated specialized areas of expertise in geophysics including magnetics, gravity, radiometrics, electromagnetics, seismic, ground-penetrating radar, borehole radar, and imaging spectroscopy. This circular consists of eight sections that contain summaries of various activities under the project. The eight sections are listed below: Laboratory Facilities and Capabilities, which includes brief descriptions of the various types of laboratories and capabilities used for the project; Method and Software Development, which includes summaries of remote-sensing, geophysical, and mineralogical methods developed or enhanced by the project; Instrument Development, which includes descriptions of geophysical instruments developed under the project; Minerals, Energy, and Climate, which includes summaries of research that applies to mineral or energy resources, environmental processes and monitoring, and carbon sequestration by earth materials; Element Cycling, Toxicity, and Health, which includes summaries of several process-oriented geochemical and biogeochemical studies and health-related research activities; Hydrogeology and Water Quality, which includes descriptions of innovative geophysical, remote-sensing, and geochemical research pertaining to hydrogeology and water-quality applications; Hazards and Disaster Assessment, which includes summaries of research and method development that were applied to natural hazards, human-caused hazards, and disaster assessments; and Databases and Framework Studies, which includes descriptions of fundamental applications of geophysical studies and of the importance of archived data.

Circular↗
USGS2019

Pesticide mixtures in the Sacramento–San Joaquin Delta, 2016–17: Results from year 2 of the Delta Regional Monitoring Program

The Delta Regional Monitoring Program was developed by the Central Valley Regional Water Quality Control Board in response to the decline of pelagic fish species in the Sacramento–San Joaquin Delta that was observed in the early 2000s. The U.S. Geological Survey, in cooperation with the Delta Regional Monitoring Program, has been responsible for collecting and analyzing surface-water samples for a suite of 154 pesticides and pesticide degradates in surface water and in suspended sediment. Additional samples were collected for the analysis of dissolved organic carbon, dissolved copper, particulate organic carbon, particulate inorganic carbon, total particulate carbon, and total particulate nitrogen; and field water-quality indicators (water temperature, specific conductance, dissolved oxygen, pH, and turbidity) were measured at each site. Five integrator sites on streams draining mixed land-use watersheds were sampled monthly from July 2016 to June 2017. Two sites were sampled in the San Joaquin River watershed and one site was sampled in each of the Mokelumne River, Sacramento River, and Ulatis Creek watersheds. A total of 53 out of 154 pesticides (18 herbicides, 14 insecticides, 13 fungicides, 7 breakdown products, and 1 synergist) were detected in surface-water samples and 95 percent of samples contained mixtures of 2 or more pesticides. The most frequently detected pesticides were the herbicides hexazinone, metolachlor, and diuron (present in 83 percent, 72 percent, and 67 percent of water samples, respectively), the insecticide methoxyfenozide (present in 83 percent of samples), and the fungicides boscalid and azoxystrobin (present in 67 percent and 58 percent of samples, respectively). Pesticide concentrations detected in water samples ranged from below method detection limits to 1,300 nanograms per liter (ng/L) for the insecticide chlorantraniliprole. A total of 4 pesticides (2 herbicides and 2 insecticides) were detected in suspended-sediment samples and 13 percent of suspended-sediment samples contained at least 1 pesticide. Pesticide concentrations detected in suspended-sediment samples ranged from 4.1 to 750 ng/L, both for the herbicide pendimethalin. Six samples contained the insecticide imidacloprid at concentrations above the U.S. Environmental Protection Agency (EPA) Aquatic Life Benchmark (10 ng/L) for chronic toxicity to aquatic invertebrates. Three samples contained bifenthrin at concentrations above the EPA Aquatic Life Benchmark (1.3 ng/L) for chronic toxicity to invertebrates. One sample contained cyhalothrin at a concentration above the U.S. Aquatic Life Benchmark (3.5 ng/L) for acute toxicity to invertebrates.

California↗
USGS2002

Comparison of dissolved oxygen and aquatic biota between a State 303(d)-listed stream segment and USGS biological reference sites in the San Jacinto River Basin, Texas, 2000

About 30 percent of the 238 water bodies on the 2000 State of Texas 303(d) list of impaired or threatened waters are included for not meeting optimum conditions for aquatic life (Texas Natural Resource Conservation Commission, 2000). Most of the water bodies on the list were assessed using water-column measures such as concentrations of dissolved oxygen (DO) and total metals as surrogates for aquatic biological data. Many water bodies were listed because of low concentrations of DO or potentially toxic dissolved metals such as lead; ambient toxicity to nonresident (laboratory) aquatic organisms also could have been a reason for listing. The Texas Natural Resource Conservation Commission (TNRCC) has emphasized the use of aquatic biological data to determine if a water body should be included or removed from the 303(d) list. The standards used to determine whether a water body should be on the State 303(d) list generally are statewide standards that have not been adjusted for regional or watershed-scale differences that reflect variability across Texas. Such is the case for DO, which is one of the more common surrogate measures used in the listing of stream segments that do not meet optimum conditions for aquatic life. The statewide minimum concentration of DO to meet optimal conditions for aquatic life is 5.0 milligrams per liter. Many water bodies in Texas with few, if any, anthropogenic influences might have DO concentrations below 5.0 milligrams per liter, especially in the late summer when water temperatures peak and streamflows are at minimums for the year.

Texas↗
USGS2006

Toxicity of Sodium Bicarbonate to Fish from Coal-Bed Natural Gas Production in the Tongue and Powder River Drainages, Montana and Wyoming

This study evaluates the sensitivity of aquatic life to sodium bicarbonate (NaHCO3), a major constituent of coal-bed natural gas-produced water. Excessive amounts of sodium bicarbonate in the wastewater from coal-bed methane natural gas production released to freshwater streams and rivers may adversely affect the ability of fish to regulate their ion uptake. The collaborative study focuses on the acute and chronic toxicity of sodium bicarbonate on select fish species in the Tongue and Powder River drainages in southeastern Montana and northeastern Wyoming. Sodium bicarbonate is not naturally present in appreciable concentrations within the surface waters of the Tongue and Powder River drainages; however, the coal-bed natural gas wastewater can reach levels over 1,000 milligrams per liter. Large concentrations have been shown to be acutely toxic to native fish (Mount and others, 1997). In 2003, with funding and guidance provided by the U.S. Environmental Protection Agency, the Montana Fish, Wildlife, and Parks and the U.S. Geological Survey initiated a collaborative study on the potential effects of coal-bed natural gas wastewater on aquatic life. A major goal of the study is to provide information to the State of Montana Water Quality Program needed to develop an aquatic life standard for sodium bicarbonate. The standard would allow the State, if necessary, to establish targets for sodium bicarbonate load reductions.

Fact Sheet↗
USGS2009

USGS Science: Addressing Our Nation's Challenges

With 6.6 billion people already living on Earth, and that number increasing every day, human influence on our planet is ever more apparent. Changes to the natural world combined with increasing human demands threaten our health and safety, our national security, our economy, and our quality of life. As a planet and a Nation, we face unprecedented challenges: loss of critical and unique ecosystems, the effects of climate change, increasing demand for limited energy and mineral resources, increasing vulnerability to natural hazards, the effects of emerging diseases on wildlife and human health, and growing needs for clean water. The time to respond to these challenges is now, but policymakers and decisionmakers face difficult choices. With competing priorities to balance, and potentially serious - perhaps irreversible - consequences at stake, our leaders need reliable scientific information to guide their decisions. As the Nation's earth and natural science agency, the USGS monitors and conducts scientific research on natural hazards and resources and how these elements and human activities influence our environment. Because the challenges we face are complex, the science needed to better understand and deal with these challenges must reflect the complex interplay among natural and human systems. With world-class expertise in biology, geology, geography, hydrology, geospatial information, and remote sensing, the USGS is uniquely capable of conducting the comprehensive scientific research needed to better understand the interdependent interactions of Earth's systems. Every day, the USGS helps decisionmakers to minimize loss of life and property, manage our natural resources, and protect and enhance our quality of life. This brochure provides examples of the challenges we face and how USGS science helps decisionmakers to address these challenges.

General Information Product↗
USGS2008

Experimental Repatriation of Mountain Yellow-legged Frogs (Rana muscosa) in the Sierra Nevada of California

In the late 1970s, Rana muscosa (mountain yellow-legged frog) was common in the Tableland area of Sequoia National Park, California where it was possible to find hundreds of tadpoles and adults around many of the ponds and lakes. Surveys in 1993-1995 demonstrated that R. muscosa was absent from more than half of all suitable habitat within the park, including the Tableland area. At that same time, R. muscosa was still common at Sixty Lake Basin, Kings Canyon National Park, 30 km to the northeast. To evaluate the potential causes for the extirpation, we repatriated R. muscosa eggs, tadpoles, subadults, and adult frogs from Sixty Lake Basin to four sites in the Tableland area in 1994 and 1995. We subsequently surveyed each release site and the surrounding area 2 - 3 times per week in 1994-1995, and intermittently in 1996-1997, to monitor the survival of all life history stages, and to detect dispersal of adults and subadults. We also monitored predation, water quality, weather, and water temperature. Our techniques for capturing, holding, transporting, and releasing R. muscosa were refined during the study, and during 1995 resulted in high initial survival rates of all life history stages. Adult frogs were anaesthetized, weighed, measured, tagged, and held in plastic boxes with wet paper towels. Tadpoles were collected and held in fiberglass screen cages set in the water at the edge of a pond. This resulted in relatively natural conditions with less crowding and good water circulation. Frogs, tadpoles, and eggs were placed in Ziploc bags for transport to the Tableland by helicopter. Short-term survival of tadpoles, subadults, and adults was high at all four release sites, tadpoles reached metamorphosis, and adult frogs were still present. However, we detected no evidence of reproduction at three sites (e.g., no new eggs or small tadpoles) and nearly all life history stages disappeared within 12 months. At the fourth site, there was limited reproduction, but it was insufficient to maintain a population. It appears that the causal factors for the demise of R. muscosa in the Tableland during the 1970s were still operating in the 1990s or that a new limiting factor has developed. Dispersal, weather, water quality, and predation do not appear to be causative agents; since fish have never been present in the portions of the watershed where we were working, they were not a factor. Observations and data are consistent with the hypotheses that chytridiomycosis, caused by the chytrid fungus Batrachochytrium dendrobatidis, and/or exposure to airborne pesticides caused both declines. However, at the time of our study, chytridiomycosis had not been described and the potentially significant role of contaminants was largely undocumented.

Open-File Report↗
USGS2009

Pre-Restoration Habitat Use by Chinook Salmon in the Nisqually Estuary Using Otolith Analysis: An Additional Year

The Nisqually Fall Chinook population is one of 27 stocks in the Puget Sound evolutionarily significant unit listed as threatened under the Federal Endangered Species Act (ESA). Preservation and extensive restoration of the Nisqually delta ecosystem is currently taking place to assist in recovery of the stock as juvenile Fall Chinook salmon are dependent upon the estuary. A pre-restoration baseline that includes characterization of life history types, estuary residence times, growth rates, and habitat use is needed to evaluate the potential response of hatchery and natural origin Chinook salmon to restoration efforts and determine restoration success. Otolith analysis was selected to examine Chinook salmon life history, growth, and residence in the Nisqually Estuary. Previously funded work on wild samples collected in 2004 established the growth rate and length of residence associated with various habitats. The purpose of the current study is to build on the previous work by incorporating otolith microstructure analysis from 2005 (second sampling year), to verify findings from 2004, and to evaluate between-year variation in otolith microstructure. Our results from this second year of analysis indicated no inter-annual variation in the appearance of the tidal delta check (TDCK) and delta-flats check (DFCK). However, a new life history type (fry migrant) was observed on samples collected in 2005. Fish caught in the tidal delta regardless of capture date spent an average of 17 days in the tidal delta. There was a corresponding increase in growth rate as the fish migrated from freshwater (FW) to tidal delta to nearshore (NS) habitats. Fish grew 33 percent faster in the tidal delta than in FW habitat and slightly faster (14 percent) in the delta flats (DF) habitat compared to the tidal delta.

Open-File Report↗
USGS2010

Water-quality data from storm runoff after the 2007 fires, San Diego County, California

The U.S. Geological Survey collected water-quality samples during the first two storms after the Witch and Harris Fires (October 2007) in southern California. The sampling locations represent an urban area (two residential sites in Rancho Bernardo that were affected by the Witch Fire; a drainage ditch and a storm drain) and a rural area (Cotton-wood Creek, which was downstream of a mobile home park destroyed by the Harris Fire). Fires produce ash and solid residues that contain soluble chemicals that can contaminant runoff. The contaminants, whether sorbed to soil and ash or dissolved, can seriously affect the quality of water supplies and sensitive ecosystems. Stormflow water samples were analyzed for field parameters, optical properties, and for a variety of constituents, including nutrients, dissolved organic carbon (DOC), suspended sediment, and metals. pH values for storm runoff from the urban areas (7.6 to 8.5) were less than pH values for ash and burned soil from previous studies (12.5 to 13). pH values for storm runoff from the rural area (about 7.7) also were less than pH values for ash and burned soil collected from the rural area (8.6 to 11.8), but were similar to pH values for wildland burned soil from previous studies. Turbidity values were much lower for the urban area than for the rural area. Nitrate concentrations in stormflow samples from all sites were less than a quarter of the U.S. Environmental Protection Agency's (2006) maximum allowable contaminant level of 10 milligrams per liter (mg/L) (as nitrogen). Phosphorus concentrations were half as much in filtered samples and two orders of magnitude smaller in unfiltered samples at the urban sites than at the rural site. DOC concentrations in stormflow samples were one order of magnitude lower at the urban sites than at the rural site. Ultraviolet (UV) absorbance at 254 nanometers (UV254) in samples ranged from 0.145 to 0.782 per centimeter (cm-1). UV-absorbance data at the urban sites indicate that the composition of DOC remained similar during both storms even though the DOC concentration changed. Total suspended-sediment concentrations ranged from 0.01 to 0.24 mg/L at the urban area, and were 12 and 45 mg/L at the rural area. Trace metals analyzed in unfiltered water samples had lower concentrations in the urban area than in the rural area. No concentrations of arsenic or mercury measured in the samples were above aquatic-life criteria. In the urban area, most concentrations of aluminum, iron, and lead exceeded aquatic-life criteria. In the rural area, aluminum, cadmium, iron, lead, and zinc exceeded aquatic-life criteria. Concentrations of aluminum and iron were two orders of magnitude larger in the rural area than in the urban area.

Open-File Report↗
USGS2010

Otolith analysis of pre-restoration habitat use by Chinook salmon in the delta-flats and nearshore regions of the Nisqually River Estuary

The Nisqually Fall Chinook population is one of 27 salmon stocks in the Puget Sound (Washington) evolutionarily significant unit listed as threatened under the federal Endangered Species Act (ESA). Extensive restoration of the Nisqually River delta ecosystem is currently taking place to assist in recovery of the stock as juvenile Fall Chinook salmon are dependent on the estuary. A pre-restoration baseline that includes the characterization of life history strategies, estuary residence times, growth rates, and habitat use is needed to evaluate the potential response of hatchery and natural origin Chinook salmon to restoration efforts and to determine restoration success. Otolith analysis was selected as a tool to examine Chinook salmon life history, growth, and residence in the Nisqually River estuary. Previously funded work on samples collected in 2004 (marked and unmarked) and 2005 (unmarked only) partially established a juvenile baseline on growth rates and length of residence associated with various habitats (freshwater, forested riverine tidal, emergent forested transition, estuarine emergent marsh, delta-flats and nearshore). However, residence times and growth rates for the delta-flats (DF) and nearshore (NS) habitats have been minimally documented due to small sample sizes. The purpose of the current study is to incorporate otolith microstructural analysis using otoliths from fish collected within the DF and NS habitats during sampling years 2004-08 to increase sample size and further evaluate between-year variation in otolith microstructure. Our results from this analysis indicated the delta-flats check (DFCK) on unmarked and marked Chinook samples in 2005-08 varied slightly in appearance from that seen on samples previously analyzed only from 2004. A fry migrant life history was observed on otoliths of unmarked Chinook collected in 2005, 2007, and 2008. Generally, freshwater mean increment width of unmarked fish, on average, was smaller compared to marked Chinook followed by tidal delta and DF/NS portions respectively. On average, the complete tidal delta growth rate was higher for marked Chinook compared to unmarked Chinook. The DF/NS growth rate was highest for unmarked and marked Chinook during 2008 compared to all other sampling years. The average DF/NS growth rate on unmarked Chinook was consistently lower than marked Chinook during all years; however, sample sizes were small during some years. Unmarked Chinook, on average, spent longer in the tidal delta compared to marked Chinook. Our results from this report suggest that otolith microstructural analysis can be a valuable tool in establishing baseline information on the utilization of Nisqually River estuary habitats by juvenile Chinook salmon prior to the newly funded restoration efforts.

Open-File Report↗
USGS2011

Organic contaminants, trace and major elements, and nutrients in water and sediment sampled in response to the Deepwater Horizon oil spill

Beach water and sediment samples were collected along the Gulf of Mexico coast to assess differences in contaminant concentrations before and after landfall of Macondo-1 well oil released into the Gulf of Mexico from the sinking of the British Petroleum Corporation's Deepwater Horizon drilling platform. Samples were collected at 70 coastal sites on the Gulf of Mexico between May 7 and July 7, 2010, to document baseline, "pre-landfall" conditions. A subset of these sites was resampled during October 4 to 14, 2010, after oil had made landfall on the Gulf of Mexico coast ("post-landfall") to determine if actionable concentrations of oil were present along shorelines. Few organic contaminants were detected in water; their detection frequencies were generally low and similar in pre-landfall and post-landfall samples. Only one organic contaminant, toluene, had significantly higher concentrations in post-landfall than pre-landfall water samples. No samples exceeded any human-health benchmarks, and only one sample exceeded an aquatic-life benchmark-the toxic-unit benchmark for polycyclic aromatic hydrocarbons (PAH) mixtures was exceeded in one post-landfall water sample from Louisiana. No exceedance was observed in the corresponding pre-landfall water sample at this site. In sediment, several PAHs were detected at over 20 percent of sites. Concentrations of 3 parent PAHs and 17 alkylated PAH groups were significantly higher in post-landfall samples than pre-landfall samples. One pre-landfall sample from Texas exceeded the sediment toxic-unit benchmark for PAH mixtures; this site was not sampled during the post-landfall period, so no comparison between sampling periods could be made. Twenty-seven percent of sediment samples exceeded empirical sediment-quality benchmarks (upper screening values) for PAHs, indicating these samples are in the probable-effect range. A higher percentage of post-landfall samples exceeded upper screening-value benchmarks (37 percent) than did pre-landfall samples (22 percent), but there was no significant difference in the proportion of samples exceeding one or more benchmarks between paired pre-landfall and post-landfall samples. Seven sites had the largest concentration differences between post-landfall and pre-landfall samples for fifteen alkylated PAHs. Five of these seven sites (1 site in Louisiana, 1 in Mississippi, and 3 in Alabama) were identified on the basis of diagnostic geochemical biomarkers as containing Macondo-1 oil in post-landfall sediments and tarballs, as described in a companion report by Rosenbauer and others (2010). For trace and major elements in water, analytical reporting levels for several elements were highly variable; after censoring to a common reporting threshold, concentrations were significantly different between pre-landfall and post-landfall samples for a few elements, all of which are elements in seawater. No human-health benchmarks were exceeded, although these were available for only two elements. Aquatic-life benchmarks for trace elements were exceeded in almost 50 percent of water samples. Post-landfall samples exceeded one or more acute benchmarks in 21 percent, and chronic benchmarks in 93 percent of samples, compared to 1 percent (acute) and 39 percent (chronic) for pre-landfall samples. The elements responsible for the most exceedances in post-landfall samples were boron (48 samples), copper (22), and manganese (12). Nickel and vanadium, which U.S. Environmental Protection Agency specifically identified as relevant to the oil spill, were responsible for exceedances in only one of the fifty-two post-landfall samples with exceedances. These results represent the minimum number of exceedances for several trace elements because a substantial number of samples could not be compared with benchmarks because the element was determined during only one sampling period (boron and vanadium) or the reporting level for the sample was higher than the applicable benchmark value (for example, cobalt, copper, lead, and nickel). The high and variable reporting levels for trace elements in water also precluded the statistical comparison between sampling periods of the proportion of samples exceeding benchmarks. For trace elements in whole (unsieved) sediment, 47 percent of samples exceeded empirical upper screening-value benchmarks, indicating these samples are in the probable-effect range. However, there was no significant difference in the proportion of samples exceeding one or more benchmarks between paired pre-landfall post-landfall samples. Benchmark exceedance frequencies could be conservatively high, because they are based on measurements of total trace-element concentrations, including the sediment matrix. In fine sediment (the less than 63-micrometer sediment fraction), one or more trace or major elements were anthropogenically enriched relative to national baseline values for U.S. streams for almost all sediment samples (123 of 124). Sixteen percent of sediment samples exceeded upper screening-value benchmarks for, and were enriched in, one or more of the element(s) barium (in 14 samples), vanadium (5), aluminum (3), manganese (3), arsenic (2), chromium (2), and cobalt (1). These samples, collected from Louisiana and Texas, were evenly divided between the pre-landfall (9 samples) and post-landfall (10 samples) periods. Considering all the information evaluated in this report, there were significant differences between pre-landfall and post-landfall samples for PAH concentrations in sediment. Pre-landfall and post-landfall samples did not differ significantly in concentrations or benchmark exceedances for most organics in water or trace elements in sediment. For trace elements in water, aquatic-life benchmarks were exceeded in almost 50 percent of samples, but the high and variable analytical reporting levels precluded statistical comparison of benchmark exceedances between sampling periods. Concentrations of several PAH compounds in sediment were significantly higher in post-landfall samples than pre-landfall samples, and five of seven sites with the largest differences in PAH concentrations also had diagnostic geochemical evidence of Deepwater Horizon Macondo-1 oil from Rosenbauer and others (2010).

Open-File Report↗
USGS2012

Preliminary juvenile Lost River and shortnose sucker investigations in Clear Lake, California--2011 pilot study summary

Poor recruitment appears to limit the recovery of Lost River and shortnose sucker populations in Clear Lake Reservoir, California, but the cause is unknown. Adult suckers migrate up Willow Creek and its tributaries to spawn in some years, but low flow in Willow Creek may inhibit spawning migrations in other years. It is unclear whether spawning is successful, larvae survive, or juveniles persist to adulthood. Environmental variables associated with successful spawning or young-of-year survival have not been identified and early life history for these populations is poorly understood. The U.S. Geological Survey in cooperation with the U.S. Fish and Wildlife Service and Ruby Pipeline L.L.C. Corporation (El Paso, Tex.) initiated a study in 2011 to better understand juvenile sucker life history in Clear Lake Reservoir, and to identify constraints in the early life history that may limit recruitment to the adult spawning populations. This is a report on the 2011 pilot study for this project.

California↗
USGS2017

Inter-annual variability in apparent relative production, survival, and growth of juvenile Lost River and shortnose suckers in Upper Klamath Lake, Oregon, 2001–15

Executive Summary Populations of the once abundant Lost River ( Deltistes luxatus ) and shortnose suckers ( Chasmistes brevirostris ) of the Upper Klamath Basin, decreased so substantially throughout the 20th century that they were listed under the Endangered Species Act in 1988. Major landscape alterations, deterioration of water quality, and competition with and predation by exotic species are listed as primary causes of the decreases in populations. Upper Klamath Lake populations are decreasing because fish lost due to adult mortality, which is relatively low for adult Lost River suckers and variable for adult shortnose suckers, are not replaced by new young adult suckers recruiting into known adult spawning aggregations. Catch-at-age and size data indicate that most adult suckers presently in Upper Klamath Lake spawning populations were hatched around 1991. While, a lack of egg production and emigration of young fish (especially larvae) may contribute, catch-at-length and age data indicate high mortality during the first summer or winter of life may be the primary limitation to the recruitment of young adults. The causes of juvenile sucker mortality are unknown. We compiled and analyzed catch, length, age, and species data on juvenile suckers from Upper Klamath Lake from eight prior studies conducted from 2001 to 2015 to examine annual variation in apparent production, survival, and growth of young suckers. We used a combination of qualitative assessments, general linear models, and linear regression to make inferences about annual differences in juvenile sucker dynamics. The intent of this exercise is to provide information that can be compared to annual variability in environmental conditions with the hopes of understanding what drives juvenile sucker population dynamics. Age-0 Lost River suckers generally grew faster than age-0 shortnose suckers, but the difference in growth rates between the two species varied among years. This unsynchronized annual variation in daily growth may be an indication that environmental conditions are affecting growth rates of these species in different ways. The combined evidence outlined in this report and in Simon and others (2012) indicates that years of relatively high age-0 sucker production occurred in the late 1990s through at least 2000, in 2006, and in 2011. Our analysis of annual age-0 sucker catch per unit effort (CPUE), which accounted for zero inflated data and annual variation in sampling gears and locations, indicated that 2006 had the greatest apparent relative production of age-0 suckers ≥ 45 mm standard length (SL) during the time period examined. Midsummer trap net effort by the U.S. Geological Survey (USGS) was too sparse to examine age-0 sucker CPUE from 2011 to 2013. Relatively frequent catches of age-1 suckers in 2001, 2007, and 2012 corroborated relatively high CPUE for age-0 suckers during 1999–2000, 2006, and 2011, as reported by USGS or Simon and others (2012). There were several indications in the data that juvenile sucker survival is low from at least midsummer of the first year of life through mid-September of the second year of life. Our estimated index of relative apparent age-0 sucker late-summer survival, which accounted for zero inflated data and variations in sampling gears and locations, was higher in 2009 than in 2004. Our index of apparent age-0 sucker mortality for all other years from 2001 to 2015 was similar among years. Seventy-five percent of age-1 suckers were captured prior to July 17 each year. In 2007, the one year with substantial age-1 sucker summertime catches, the proportion of nets to capture age-1 suckers decreased from July to mid-September. Maximum annual age-2+ sucker CPUE was 0.02 fish per net, 10,000 times less than the maximum annual age-0 sucker CPUE. Analysis of species data indicated that juvenile Lost River suckers may have greater apparent mortality than shortnose suckers. Lost River suckers made up a smaller proportion of age-0 suckers captured in July each year than would be expected, based on the abundance of adult Lost River suckers relative to shortnose suckers, and higher Lost River than shortnose sucker fecundity. The proportion of age-0 suckers captured that were Lost River suckers decreased from July to September in several years. Only 14 percent of age-1 or older juvenile suckers identified to species over the 15-year time period were Lost River suckers.

Oregon↗