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USGS2015

Global trends in emerging viral diseases of wildlife origin

Fifty years ago, infectious diseases were rarely considered threats to wildlife populations, and the study of wildlife diseases was largely a neglected endeavor. Furthermore, public health leaders at that time had declared that “it is time to close the book on infectious diseases and the war against pestilence won,” a quote attributed to Dr. William H. Stewart in 1967. There is some debate whether he actually said these words; however, they reflect the widespread belief at that time (Spellberg, 2008). Leap forward to today, and the book on infectious diseases has been dusted off. There is general consensus that the global environment favors the emergence of infectious diseases, and in particular, diseases of wildlife origin (Taylor et al., 2001). Examples of drivers of these infectious diseases include climate and landscape changes, human demographic and behavior changes, global travel and trade, microbial adaptation, and lack of appropriate infrastructure for wildlife disease control and prevention (Daszak et al., 2001). The consequences of these emerging diseases are global and profound with increased burden on the public health system, negative impacts on the global economy and food security, declines and extinctions of wildlife species, and subsequent loss of ecosystem integrity. For example, 35 million people are currently living with HIV infection globally (http://www.who.int/gho/hiv/en); 400 million poultry have been culled since 2003 as a result of efforts to control highly pathogenic H5N1 avian influenza (http://www.fao.org/avianflu/en/index.html), and there are increasing biological and ecological consequences. Examples of health threats to biodiversity include the “spillover” of human diseases to great ape populations (Köndgen et al., 2008), the near-extirpation of the black-footed ferret from canine distemper and sylvatic plague (for a review see Abbott et al., 2012), and threats to Hawaiian forest birds from introduced pathogens such as avian malaria and avian pox (van Riper et al., 1986, 2002). There are also newly discovered pathogens or diseases that have resulted in population declines, and global extinctions of several species. Examples include Batrachochytrium dendrobatidis, which causes a cutaneous fungal infection of amphibians and is linked to declines of amphibians globally (Kriger and Hero, 2009); and recently discovered Pseudogymnoascus (Geomyces) destructans, the etiologic agent of white-nose syndrome (WNS), which has caused precipitous declines of North American bat species (Blehert et al., 2009). Furthermore, there is increasing evidence of the subsequent impacts on human and ecosystem health; for example, increasing risk of exposure to Lyme disease as a consequence of decreased biodiversity (LoGiudice et al., 2003) as well as the economic cost of the loss of bats due to decreased insect control services (Boyles et al., 2011). Figure A12-1 is a timeline of important diseases investigated by the U.S. Geological Survey since the 1970s, which illustrates three factors: 1. The unprecedented emergence of new pathogens and geographic spread of known pathogens since the 1990s; 2. Diseases are increasingly causing large-scale, negative impacts on wildlife populations and spreading over larger geographic areas rather than remaining localized; and 3. Diseases are increasingly of concern for multiple sectors, including public health, agriculture and wildlife management agencies. Of increasing concern are these novel diseases such as WNS as they are hard to anticipate, particularly devastating to human health or wildlife populations, challenging to manage, spread over large geographic areas in short time periods, and may result in ecological ripple effects that are difficult to predict. The following article provides examples of recently emerged viral diseases of wildlife origin. The examples have been selected to illustrate the drivers of emerging viral diseases, both novel pathogens and previously known diseases, the impacts of these diseases, as well as the role of wildlife both as “villains” or reservoirs as well as “victims” of these viral diseases. The article also discusses potential management strategies for emerging viral diseases in wildlife populations and future science directions in wildlife health to prevent, prepare, respond to, and recover from these disease events. Finally, the concept of One Health and its potential role in developing solutions to these issues of mutual concern is discussed.

Conference Paper↗

USGS2014

Changes in Mauna Kea Dry Forest Structure 2000-2014

Changes in the structure of the subalpine vegetation of Palila Critical Habitat on the southwestern slope of Mauna Kea Volcano, Hawai‘i, were analyzed using 12 metrics of change in māmane (Sophora chrysophylla) and naio (Myoporum sandwicense) trees surveyed on plots in 2000 and 2014. These two dominant species were analyzed separately, and changes in their structure indicated changes in the forest’s health. There was a significant increase in māmane minimum crown height (indicating a higher ungulate “browse line”), canopy area, canopy volume, percentage of trees with ungulate damage, and percentage of dead trees. No significant changes were observed in māmane maximum crown height, proportion of plots with trees, sapling density, proportion of plots with saplings, or the height distribution of trees. The only significant positive change was for māmane tree density. Significantly negative changes were observed for naio minimum crown height, tree height, canopy area, canopy volume, and percentage of dead trees. No significant changes were observed in naio tree density, proportion of plots with trees, proportion of plots with saplings, or percentage of trees with ungulate damage. Significantly positive changes were observed in naio sapling density and the height distribution of trees. There was also a significant increase in the proportion of māmane vs. naio trees in the survey area. The survey methods did not allow us to distinguish among potential factors driving these changes for metrics other than the percentage of trees with ungulate damage. Continued ungulate browsing and prolonged drought are likely the factors contributing most to the observed changes in vegetation, but tree disease or insect infestation of māmane, or naio, and competition from alien grasses and other weeds could also be causing or exacerbating the impacts to the forest. Although māmane tree density has increased since 2000, this study also demonstrates that efforts by managers to remove sheep (Ovis spp.) from Palila Critical Habitat have not overcome the ability of sheep to continue to damage māmane trees and impede restoration of the vegetation.

Hawaii↗

USGS2015

Behavior of the Hawaiian Hawaiian Hoary Bat (Lasiurus cinereus semotus) at wind turbines and its distribution across the North Ko'olau Mountains, O'ahu

We studied the landscape distribution of endemic Hawaiian hoary bats (Lasiurus cinereus semotus ) on the north Ko‘olau Mountains of O‘ahu, Hawai‘i, from May 2013 to May 2014, while simultaneously studying their behavior at wind turbines within the broader landscape. This research aimed to assess the risk that wind turbines pose to bats on the island and integrated a variety of methods, including acoustic monitoring, thermal videography, and fatality searches.Our findings indicate that hoary bats were acoustically cryptic and occurred sparsely in the region. Overall site occupancy rate was 55% during the 1-year period of acoustic monitoring at 23 sites, and there was only an 8% chance of acoustically detecting a bat on a given night if it was present. We detected bats less frequently in windward northern parts of the study area and at windy, lower-elevation sites with rough terrain. Bats were detected more frequently in leeward southern parts of the study area and at wind-sheltered, higher-elevation sites with flat ridgetops. Acoustic detections were consistently low from October through February and increased at most sites to peak in April through August. However, meteorological conditions were not found to be associated with the acoustic prevalence of bats on a night-to-night basis. We observed more than three thousand events involving bats during six months of nightly video surveillance at four wind turbines. Video monitoring revealed several links to weather at the local scale, despite acoustic detections not clearly relating to weather in our broader landscape analysis. Video demonstrated bats occurring near turbines more often on nights with little rain, warmer temperatures, moderate wind speeds, low humidity, and the low but rising barometric pressures indicative of fair weather and improved foraging conditions. Video monitoring also demonstrated that the presence of bats near turbines strongly correlates with insect presence. We detected bats on video rather infrequently, averaging only one to two passes per hour. Most detections were brief (median = 4.0 sec) and involved single bats (97%), with the amount of time during which bats were observed totaling to only 0.10% of the video analyzed (about 3.8 hours of 3,847 total hours). Bats frequently foraged in the airspace near turbines. These results differ from a recent similar study on the mainland (continental North America) and may indicate that Hawaiian hoary bats spend less time closely approaching wind turbines and show less interest in them than their more-migratory mainland conspecifics. We speculate that the Hawaiian hoary bats we observed were locally resident and frequenting high-quality habitat near familiar structures. In contrast, hoary bats observed at wind facilities on the mainland appear to approach and investigate unfamiliar landscape structures that they mistake for trees as they migrate long distances. Consequently, Hawaiian hoary bats may be less susceptible to fatality at wind turbines on a per-encounter basis than hoary bats in North America. Only one bat carcass was found at the four turbines searched daily for six months. The relatively high probability of finding carcasses provided strong assurance that few carcasses were likely missed—there was less than a 10% chance that total fatality at the four turbines monitored for half a year exceeded three bats.

Hawaii↗

USGS1977

Benthic invertebrates in an arctic mountain stream, Brooks Range, Alaska

A 1-day, late-summer reconnaissance of the Dietrich River, Alaska, determined species composition and diversity of benthic invertebrates and examined the correlation between stream order and invertebrate distribution. Benthic invertebrates were collected by dip net, drift net, and 10-rock collections, and results were combined for each station. Forty-nine taxa were identified from 5 stations representing stream orders 1 through 5. Aquatic insects comprised 88 percent of all taxa and 97 percent of all individuals from the Dietrich River. Diptera, especially Chironomidae, was the most abundant, followed by Plecoptera. Diamesinae was abundant at the headwaters, decreasing downstream; Orthocladiinae exhibited the reverse distribution pattern. Diversity of collections generally increased downstream. The station collections were compared using coefficients of similarity, cluster analysis, and taxonomy. Collections from adjacent stations were most similar and similarity decreased with increasing distance. The fauna was tentatively divided into zones with characteristic communities: a Diamesinae-Simuliidae fauna in zone I (stream order 1), zone II, a region of transition (orders 2-4), and an Orthocladiinae-Plecoptera-Ephemeroptera fauna in zone III (order 5). The fauna compares closely with that of other arctic streams. Although not conclusive, the benthic invertebrate results are consistent with the hypothesis that stream order is related to lotic biological communities.

Alaska↗

USGS2011

Diet of juvenile and adult American shad in the Columbia River

The diet of juvenile and adult American shad Alosa sapidissima captured from various locations in the Columbia River was investigated during 2007 and 2008. Collection efforts in 2007 were restricted to fish collected from existing adult and juvenile fish collection facilities located at Bonneville Dam and to adult shad captured by angling downstream from Bonneville Dam. In 2008, we used gillnets, electrofishing, beach seining, or cast nets to collect juvenile and adult shad from the saline estuary near Astoria (approximately river km 24) to just upstream from McNary Dam (approximately river km 472). We examined the stomach contents of 436 American shad captured in 2007 and 1,272 captured in 2008. Fish caught within the river were much more likely to contain food items than fish removed from fish collection facilities. The diet of age-0 American shad varied spatially and temporally, but was comprised primarily of crustaceans and insects. Prey diversity of age-0 American shad, as assessed by the Shannon Diversity Index, increased with decreasing distance to the estuary. Pre- and partial-spawn American shad primarily consumed Corophium spp. throughout the Columbia River; however, post-spawn adults primarily consumed gastropods upstream of McNary Dam

Oregon↗

USGS2011

Development of a bioenergetics model for age-0 American shad

Bioenergetics modeling can be used as a tool to investigate the impact of non-native age-0 American shad ( Alosa sapidissima ) on reservoir and estuary food webs. The model can increase our understanding of how these fish influence lower trophic levels as well as predatory fish populations that feed on juvenile salmonids. Bioenergetics modeling can be used to investigate ecological processes, evaluate alternative research hypotheses, provide decision support, and quantitative prediction. Bioenergetics modeling has proven to be extremely useful in fisheries research (Ney et al. 1993,Chips and Wahl 2008, Petersen et al. 2008). If growth and diet parameters are known, the bioenergetics model can be used to quantify the relative amount of zooplankton or insects consumed by age-0 American shad. When linked with spatial and temporal information on fish abundance, model output can guide inferential hypothesis development to demonstrate where the greatest impacts of age-0 American shad might occur. Bioenergetics modeling is particularly useful when research questions involve multiple species and trophic levels (e.g. plankton communities). Bioenergetics models are mass-balance equations where the energy acquired from food is partitioned between maintenance costs, waste products, and growth (Winberg 1956). Specifically, the Wisconsin bioenergetics model (Hanson et al. 1997) is widely used in fisheries science. Researchers have extensively tested, reviewed, and improved on this modeling approach for over 30 years (Petersen et al. 2008). Development of a bioenergetics model for any species requires three key components: 1) determine physiological parameters for the model through laboratory experiments or incorporate data from a closely related species, 2) corroboration of the model with growth and consumption estimates from independent research, and 3) error analysis of model parameters. Wisconsin bioenergetics models have been parameterized for many of the salmonids and predatory fishes encountered in the lower Columbia River (Petersen and Ward 1999). The Wisconsin bioenergetics model has not been developed for American shad, however Limburg (1996) parameterized a simplified bioenergetics growth model for this species. A common application for the Wisconsin bioenergetics model is to estimate the consumption or growth of a fish population under different temperature and feeding scenarios (Ney 1993). One advantage of the bioenergetics approach is that consumption can be estimated without direct field measurements of predation rate (prey·predator -1 · day -1 ; Petersen and Ward 1999). Field estimates of fish consumption are time consuming and costly to determine, and estimates may show wide variance due to environmental and sampling variability. However, the consumption parameters used in a newly developed bioenergetics model must be verified with field and laboratory estimates of consumption (Ney 1993). The objective of this research was to parameterize a Wisconsin bioenergetics model for age-0 American shad using published physiological data on American shad and closely related alosine species. The American shad bioenergetics model will be used as a tool to explore various hypotheses about how age-0 American shad directly and indirectly affect Columbia River salmon through ecological interactions in lower Columbia River food webs. One over-arching focus of the larger research project was to identify potential interactions between age-0 American shad and juvenile salmonids, addressing potential outcomes through bioenergetics modeling scenarios. This report contains two bioenergetics modeling applications to demonstrate how these models can be used to address management questions and direct research effort. The first modeling application uses the American shad bioenergetics model described in this report to explore prey consumption by age-0 American shad (Chapter 1, this report). Dietary data on age-0 American shad and previously published reports on the diet of juvenile fall Chinook salmon (Rondorf et al. 1990, USGS unpublished data) suggested there might be considerable dietary overlap between these species in the lower Columbia River. The U.S. Geological Survey (USGS) was interested in using the American shad bioenergetics model to explore hypotheses concerning dietary overlap between age-0 American shad and emigrating fall Chinook salmon. The second modeling application uses the fall Chinook salmon bioenergetics model (Koehler et al. 2006) to explore the growth potential of juvenile fall Chinook salmon predating on age-0 American shad in the lower Columbia River. This modeling was based dietary information on a small number of age-0 fall Chinook salmon (n = 13) collected in John Day Reservoir in 1994 - 1996 (unpublished USGS data). Analysis of this dietary data found that these salmonids were feeding primarily on age-0 American shad (> 75% by weight).

Oregon↗

USGS2015

Critical loads of atmospheric deposition to Adirondack lake watersheds: A guide for policymakers

Acid deposition is sometimes referred to as “acid rain,” although part of the acid load reaches the surface by means other than rainfall. In the eastern U.S., acid deposition consists of several forms of sulfur and nitrogen that largely originate as emissions to the atmosphere from sources such as electricity-generating facilities (coal, oil, and natural gas), diesel- and gasoline-burning vehicles, some agricultural activities, and smokestack industries. Acid deposition is known to cause deleterious effects to sensitive ecosystems of which the Adirondack region of New York State provides several well-known and well-studied examples. This largely forested region includes abundant lakes, streams, and wetlands and possesses several landscape features that result in high ecosystem sensitivity to acid deposition. These features include bedrock that weathers slowly, steep slopes, and thin, naturally acidic soils. An ecosystem is described as sensitive to, or affected by, acid deposition if prolonged exposure to acid deposition has resulted in detrimental ecosystem effects. Soils, streams, and lakes that are less sensitive are better able to buffer acid deposition. A principal reason that acidification is a concern for resource managers is because of the changes induced in native biota and their habitat on land and in water. As the chemistry of soils and surface waters in sensitive landscapes changes in response to prolonged exposure to acid deposition, organisms that cannot tolerate high acidity, such as sugar maple trees and many species of fish and aquatic insects, may be gradually eliminated from the ecosystem. Other biota such as red spruce may experience increased stress and reduced growth rates as a result of acidification, exposing these species to increased susceptibility to disease and other natural stressors and perhaps increased mortality. The ecological effects of acid deposition have been documented by extensive research that began in the U.S. in the 1970s and continues today. This report does not provide a detailed discussion of these ecological effects, but interested readers can refer to four publications that provide good summaries of current scientific knowledge of these effects, including extensive reference to previous research in the Adirondacks (Driscoll et al. 2001, Jenkins et al. 2007, Burns et al. 2011, Sullivan 2015).

New York↗

USGS1987

Macrofauna and environment of the Nanpil-Kiepw River, Ponape, Eastern Caroline Islands

The first comprehensive evaluation of stream fauna in the Eastern Caroline Islands resulted from collections on Ponape, a 334-km- island having more than 40 streams, many of which arise along 700-m-high interior ridges. Field surveys centered on the Nanpil-Kiepw River below 170 m elevation, a bouldery reach with water of low mineral content and frequent surging flows. Faunal specimens were collected by electrofishing, rotenone treatment, netting, and hand picking. Discharge character of the Nanpil-Kiepw River is similar to but more extreme than that of other streams of Oceania with which it was compared. Drastic flow surges appeared to be a major factor affecting community structure. At least 44 faunal species were present, 36 of them representing taxons primarily of marine origin that are characteristic of oceanic islands: 15 fishes (5 families), 10 decapod crustaceans (3 families), and 11 snails (2 families). Larvae of aquatic moths were the only insects of significance. Four sicydiine gobies are new species possibly endemic to Ponape or the Eastern Caroline Islands. Based on numbers of species within prominent taxons and diadromous groups, Ponape’s faunal diversity exceeds that of Samoa, Guam, and Hawaii, but is lower than that of Palau. Similarities of Ponape's identified fish species to those of Palau suggest that Ponape was colonized from the west along the “Caroline conduit.”

Pohnpei↗

USGS2000

Accumulation and fate of mercury in an Everglades aquatic food web

This project examined the pathways of mercury (Hg) bioaccumulation and its relation to trophic position and hydroperiod in the Everglades. I described fish-diet differences across habitats and seasons by analyzing stomach contents of 4,000 fishes of 32 native and introduced species. Major foods included periphyton, detritus/algal conglomerate, small invertebrates, aquatic insects, decapods, and fishes. Florida gar, largemouth bass, pike killifish, and bowfin were at the top of the piscine food web. Using prey volumes, I quantitatively classified the fishes into trophic groups of herbivores, omnivores, and carnivores. Stable-isotope analysis of fishes and invertebrates gave an independent and similar assessment of trophic placement. Trophic patterns were similar to those from tropical communities. I tested for correlations of trophic position and total mercury. Over 4,000 fish, 620 invertebrate, and 46 plant samples were analyzed for mercury with an atomic-fluorescence spectrometer. Mercury varied within and among taxa. Invertebrates ranged from 25–200 ng g −1 ww. Small-bodied fishes varied from 78–>400 ng g −1 ww. Large predatory fishes were highest, reaching a maximum of 1,515 ng −1 ww. Hg concentrations in both fishes and invertebrates were positively correlated with trophic position. I examined the effects of season and hydroperiod on mercury in wild and caged mosquitofish at three pairs of marshes. Nine monthly collections of wild mosquitofish were analyzed. Hydroperiod-within-site significantly affected concentrations but it interacted with sampling period. To control for wild-fish dispersal, and to measure in situ uptake and growth, I placed captive-reared, neonate mosquitofish with mercury levels from 7–14 ng g −1 ww into field cages in the six study marshes in six trials. Uptake rates ranged from 0.25–3.61 ng g −1 ww d −1 . As with the wild fish, hydroperiod-within-site was a significant main effect that also interacted with sampling period. Survival exceeded 80%. Growth varied with season and hydroperiod, with greatest growth in short-hydroperiod marshes. The results suggest that dietary bioaccumulation determined mercury levels in Everglades aquatic animals, and that, although hydroperiod affected mercury uptake, its effect varied with season.

Thesis↗

USGS2016

Winter distribution and use of high elevation caves as foraging sites by the endangered Hawaiian hoary bat, Lasiurus cinereus semotus

We examine altitudinal movements involving unusual use of caves by Hawaiian hoary bats, Lasiurus cinereus semotus , during winter and spring in the Mauna Loa Forest Reserve (MLFR), Hawai‘i Island. Acoustic detection of hoary bat vocalizations, were recorded with regularity outside 13 lava tube cave entrances situated between 2,200 to 3,600 m asl from November 2012 to April 2013. Vocalizations were most numerous in November and December with the number of call events and echolocation pulses decreasing through the following months. Bat activity was positively correlated with air temperature and negatively correlated with wind speed. Visual searches found no evidence of hibernacula nor do Hawaiian hoary bats appear to shelter by day in these caves. Nevertheless, bats fly deep into caves as evidenced by numerous carcasses found in cave interiors. The occurrence of feeding buzzes around cave entrances and visual observations of bats flying in acrobatic fashion in cave interiors point to the use of these spaces as foraging sites. Peridroma moth species (Noctuidae), the only abundant nocturnal, flying insect sheltering in large numbers in rock rubble and on cave walls in the MLFR, apparently serve as the principal prey attracting hoary bats during winter to lava tube caves in the upper MLFR. Caves above 3,000 m on Mauna Loa harbor temperatures suitable for Pseudogymnoascus destructansfungi , the causative agent of White-nose Syndrome that is highly lethal to some species of North American cave-dwelling bats. We discuss the potential for White-nose Syndrome to establish and affect Hawaiian hoary bats.

Hawaii↗

USGS1995

Effects of agricultural, industrial, and municipal pollutants on wetlands and wildlife and wildlife health

Wetlands accumulate pollutants from adjacent areas through intentional discharge of sewage or industrial wastes, runoff of agricultural fertilizers and pesticides, and discharge from municipal storm drains. Coastal wetlands receive more pollutants indirectly as the endpoint for upland drainage systems and directly through petroleum spills and insect abatement. Wetlands that serve as evaporation basins during seasonally high water, especially in more arid climates, concentrate natural compounds and as well as pollutants. The ability of wetlands to be effective filtration systems for wastewater nutrients through microbial transformations, uptake by plants, and deposition of particulate matter, and the shortage of water in arid climates has resulted in revision of wetland regulations. Wetlands can now be developed for wastewater treatment and natural wetlands can be restored or converted to wastewater treatment systems. The effect of these accumulation pollutants on wetland ecology and wildlife health needs to be recognized.

Conference Paper↗

USGS1994

Pesticides detected in surface waters and fish of the Red River of the North drainage basin

The Red River of the North drainage basin (herein referred to as Red River Basin) within the United States is a study unit under the U.S. Geological Survey (USGS) National Water-Quality Assessment (NAWQA) program. The overall goals of this program, initiated to better define the status and trends of the Nation’s water quality, are to address regional and national water-quality issues in a nationally consistent manner. Pesticide contamination of surface water and fish is one focus of this program. The Red River Basin is about 90,600 square kilometers (km2 ) in area and is composed of rolling prairie with a high density of prairie-pothole wetlands to the west; a very flat glacial lake bed with drainage ditches and meandering streams in the center (Red River Valley Lake Plain); morainal hills with a mosaic of agriculture, lakes, and forest in the southeast; and a flat lake-washed till plain with extensive peatlands in the northeast (fig. 1). Stoner and others (1993) have given a more complete description of the environmental setting of the Red River Basin. Agriculture is a major component of the region’s economy, and is greatest in the Red River Valley Lake Plain. Principal crops are wheat, barley, oats, sunflowers, corn, soybeans, dry beans, potatoes, sugarbeets, alfalfa hay, and other hay. Herbicide, insecticide, and fungicide use depends on crop type and environmental stresses such as crop disease, drought, and periodic insect-pest infestation. This paper focuses on the occurrence, movement, and fate of agricultural pesticides that are applied to crops, but improper disposal, and use of pesticides for household pests, lawn care, golf courses, and home gardening can also result in contamination of the aquatic environment. Furthermore, atmospheric transport is known to transport pesticides to regions far from their source (Kurtz, 1990). Pesticide data have been collected in the Red River Basin by various Federal, State, and local agencies. Tornes and Brigham (1994) recently summarized many of these historical data. This paper summarizes selected data collected as part of the NAWQA program during 1992-93, and briefly compares these data to historical data and to pesticide usage.

Minnesota, North Dakota, South Dakota↗

USGS2015

Etheostoma brevirostrum (Holiday Darter)

The life history of the Holiday Darter is incompletely known. Only reproductive behavior (Johnston and Shute 1997; Anderson 2009), habitat use, and spawning seasons (Anderson 2009) have been studied. However, based on similarity of life history attributes among snubnose darters (Carney and Burr 1989; Johnston and Haag 1996; Khudamrongsawat et al. 2005), the Holiday darter probably lives 3+ years and matures in the first year. It is likely a benthic omnivore, feeding primarily on chironomid (midge) larvae and other common orders of aquatic insects and occasional microcrustaceans. Spawning occurs from late March to early June, with most activity occurring in April. Based on four females from the Amicalola Creek system, fecundity ranged from 50 to 150 mature eggs, egg sizes ranged from 1.2mm to 1.6mm diameter. The Holiday Darter is an “egg attacher” (sensu Page and Swofford 1984). A spawning female is courted by multiple males, but a dominant (alpha) male aggressively rebuts encroaching males and defends a “roving territory” of the receptive female. The alpha male is the principal spawning partner although satellite males often rush a spawning pair. The receptive female slowly swims along the stream bottom, frequently stopping, apparently to assess substrate attributes, and selects each spawning site where only one or two eggs are spawned. The process is repeated and often covers several meters of stream bottom until the courted female finishes spawning and is abandoned by the alpha male. Water temperatures during spawning in Amicalola Creek and the upper Etowah River ranged 10 to 17° C (Anderson 2009).

Georgia↗

USGS1965

Relative toxicities of similar formulations of pyrethrum and rotenone to fish and immature stoneflies

The insecticidal properties of rotenone and pyrethrum have been known for many years. Both toxicants have long histories of extensive use for control of a variety of insect pests. Rotenone has been also employed as a management tool by fishery biologists to rehabilitate fishing waters, and its toxicity to fish in a number of ecological situations is well established. Pyrethrum's toxicity to fish is less well known.

Pyrethrum Post↗

USGS2016

Genetic diversity of Wolbachia endosymbionts in Culex quinquefasciatus from Hawai`i, Midway Atoll, and Samoa

Incompatible insect techniques are potential methods for controlling Culex quinquefasciatus and avian disease transmission in Hawai‘i without the use of pesticides or genetically modified organisms. The approach is based on naturally occurring sperm-egg incompatibilities within the Culex pipiens complex that are controlled by different strains of the bacterial endosymbiont Wolbachia pipientis (wPip). Incompatibilities can be unidirectional (crosses between males infected with strain A and females infected with strain B are fertile, while reciprocal crosses are not) or bidirectional (reciprocal crosses between sexes with different wPip strains are infertile). The technique depends on release of sufficient numbers of male mosquitoes infected with an incompatible wPip strain to suppress mosquito populations and reduce transmission of introduced avian malaria ( Plasmodium relictum ) and Avipoxvirus in native forest bird habitats. Both diseases are difficult to manage using more traditional methods based on removal and treatment of larval habitats and coordination of multiple approaches may be needed to control this vector. We characterized the diversity of Wolbachia strains in C. quinquefasciatus from Hawai‘i, Kaua‘i, Midway Atoll, and American Samoa with a variety of genetic markers to identify compatibility groups and their distribution within and between islands. We confirmed the presence of wPip with multilocus sequence typing, tested for local genetic variability using 16 WO prophage genes, and identified similarities to strains from other parts of the world with a transposable element (tr1). We also tested for genetic differences in ankyrin motifs (ank2 and pk1) which have been used to classify wPip strains into five worldwide groups (wPip1–wPip5) that vary in compatibility with each other based on experimental crosses. We found a mixture of both widely distributed and site specific genotypes based on presence or absence of WO prophage and transposable element markers on Hawai‘i Island (Volcano, Pu‘u Wa‘awa‘a, Laupāhoehoe, Kaumana, Kahuku, Nīnole, and Maulua Gulch), Kaua‘i Island (Kawaikōī, Mōhihi, Kalāheo, Lāwa‘i and Hanapepe) and Midway Atoll. Genotypes from American Samoa were unique and formed their own clade. Based on analysis of ankyrin motifs, wPip strains from Hawai‘i, Kaua‘i, and Midway Atoll were most similar to wPip5 strains of Australasian origin. By contrast, Wolbachia strains from Culex quinquefasciatus collected in American Samoa were most similar to wPip3 strains of American origin. We detected a single Culex mosquito from Pu‘u Wa‘awa‘a on Hawai‘i Island that was infected with a unique wPip3 genotype. This discovery, plus a rarefaction analysis of genotypes from Kaua‘i and Hawai‘i Islands suggests that limited sampling may have underestimated diversity of wPip in our study. Mosquitoes infected with wPip5 and wPip3 are bidirectionally compatible with each other based on prior studies, which would support their ability to coexist within the same population on Hawai‘i Island. Available evidence from prior studies suggests that genotype wPip4 from Africa, the Middle East, Europe, and Asia is bidirectionally incompatible with genotype wPip5 and varies in compatibility with genotype wPip3 depending on geographic origin. Since wPip5 appears to be the most common compatibility group in Hawai‘i based on limited sampling, logical next steps are to 1) expand the current survey to include additional islands and localities, 2) infect a laboratory colony of Hawaiian Culex with wPip4 through tetracycline treatment of Hawaiian mosquitoes and backcross with Culex from Europe, North Africa, and the Middle East that are naturally infected with wPip4, 3) conduct cage trials to confirm bidirectional incompatibilities between Hawaiian Culex infected with wPip4 and wPip5, and 4) conduct field trials to evaluate whether release of incompatible males can be applied at small scales to suppress local populations.

American Samoa, Hawaii↗

USGS1992

Recovery of benthic-invertebrate communities in the White River near Indianapolis, Indiana, USA, following implementation of advanced treatment of municipal wastewater

The City of Indianapolis, Indiana, USA, completed construction of advanced-wastewater-treatment systems to enlarge and upgrade existing secondary-treatment processes at the City’s two municipal wastewater-treatment plants in 1983. These plants discharge their effluent to the White River. A study was begun in 1981 to evaluate the effects of municipal wastewater on the quality of the White River near Indianapolis. As part of this study, benthic-invertebrate samples were collected from one riffle upstream and two riffles downstream from the treatment plants annually from 1981 through 1987 (2 times before and 5 times after the plant improvements became operational). Samples were collected during periods of late-summer or early-fall low streamflow with a Surber sampler. Upstream from the wastewater-treatment plants, mayflies and caddisflies were the predominant organisms in the benthic-invertebrate community (from 32 to 93 percent of all organisms; median value is 67 percent) with other insects and mollusks also present. Before implementation of advanced wastewater-treatment, the benthic-invertebrate community downstream from the wastewater treatment plants was predominantly chironomids and oligochaetes (more than 98 percent of all organisms)-organisms that generally are tolerant of organic wastes. Few intolerant species, such as mayflies or caddisflies were found. Following implementation of advanced wastewater treatment, mayflies and caddisflies became numerically dominant in samples collected downstream from the plants. By 1986, these organisms accounted for more than 90 percent of all organisms found at the two downstream sites. The diversity of benthic invertebrates found in these samples resembled that at the upstream site. The improvement in the quality of municipal wastewater effluent resulted in significant improvements in the water quality of the White River downstream from Indianapolis. These changes in river quality, in turn, have resulted in a shift from mostly pollution-tolerant to mostly pollution-intolerant organisms in the benthic-invertebrate community of the White River downstream from Indianapolis. The recovery was not immediate, however, with one of the downstream sites requiring 3 years before pollution-intolerant organisms became numerically dominant.

Indiana↗

USGS2011

Chapter 7: Occurrence and abundance of ants, reptiles, and mammals

Sagebrush ( Artemisia spp.)- associated wildlife are threatened by habitat loss and fragmentation and by impacts associated with anthropogenic disturbances, including energy development. Understanding how species of concern as well as other wildlife including insects, reptiles, and mammals respond to type and spatial scale of disturbance is critical to managing future land uses and identifying sites that are important for conservation. We developed statistical models to describe species occurrence or abundance, based on area searches in 7.29-ha survey blocks, across the Wyoming Basins Ecoregional Assessment (WBEA) area for six shrub steppe-associated species: harvester ant ( Pogonomyrmex spp.), thatch ant ( Formica spp.), short-horned lizard ( Phrynosoma hernandesi ), white-tailed jackrabbit ( Lepus townsendii ), cottontail ( Sylvilagus spp.) and least chipmunk ( Tamius minimus ). We modeled patterns in occupancy or abundance relative to multi-scale measures of vegetation type and pattern, abiotic site characteristics, and anthropogenic disturbance factors. Sagebrush habitat was a strong predictor of occurrence for shorthorned lizards and white-tailed jackrabbits, but weak for the other four species. Vegetation and abiotic characteristics were strong determinants of species occurrence, although the scale of response was not consistent among species. All species, with the exception of the short-horned lizard, responded to anthropogenic disturbance, although responses again varied as a function of scale and direction (negative and positive influences). Our results improve our understanding of how environmental and anthropogenic factors affect species distributions across the WBEA area and facilitate a multi-species approach to management of this sagebrush ecosystem.

Wyoming↗

USGS2009

Environmental effects of hydrothermal alteration and historical mining on water and sediment quality in Central Colorado

The U.S. Geological Survey conducted an environmental assessment of 198 catchments in a 54,000-km2 area of central Colorado, much of which is on Federal land. The Colorado Mineral Belt, a northeast-trending zone of historical base- and precious-metal mining, cuts diagonally across the study area. The investigation was intended to test the hypothesis that degraded water and sediment quality are restricted to catchments in which historical mining has occurred. Water, streambed sediment, and aquatic insects were collected from (1) catchments underlain by single lithogeochemical units, some of which were hydrothermally altered, that had not been prospected or mined; (2) catchments that contained evidence of prospecting, most of which contain hydrothermally altered rock, but no historical mining; and (3) catchments, all of which contain hydrothermally altered rock, where historical but now inactive mines occur. Geochemical data determined from catchments that did not contain hydrothermal alteration or historical mines met water quality criteria and sediment quality guidelines. Base-metal concentrations from these types of catchments showed small geochemical variations that reflect host lithology. Hydrothermal alteration and mineralization typically are associated with igneous rocks that have intruded older bedrock in a catchment. This alteration was regionally mapped and characterized primarily through the analysis of remote sensing data acquired by the ASTER satellite sensor. Base-metal concentrations among unaltered rock types showed small geochemical variations that reflect host lithology. Base-metal concentrations were elevated in sediment from catchments underlain by hydrothermally altered rock. Classification of catchments on the basis of mineral deposit types proved to be an efficient and accurate method for discriminating catchments that have degraded water and sediment quality. Only about 4.5 percent of the study area has been affected by historical mining, whereas a larger part of the study area is underlain by hydrothermally altered rock that has weathered to produce water and sediment with naturally elevated geochemical baselines.

Colorado↗