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USGS2006

Future trends in transport and fate of diffuse contaminants in catchments, with special emphasis on stable isotope applications

A summary is provided of the first of a series of proposed Integrated Science Initiative workshops supported by the UNESCO International Hydrological Programme. The workshop brought together hydrologists, environmental chemists, microbiologists, stable isotope specialists and natural resource managers with the purpose of communicating new ideas on ways to assess microbial degradation processes and reactive transport at catchment scales. The focus was on diffuse contamination at catchment scales and the application of compound-specific isotope analysis (CSIA) in the assessment of biological degradation processes of agrochemicals. Major outcomes were identifying the linkage between water residence time distribution and rates of contaminant degradation, identifying the need for better information on compound specific microbial degradation isotope fractionation factors and the potential of CSIA in identifying key degradative processes. In the natural resource management context, a framework was developed where CSIA techniques were identified as practically unique in their capacity to serve as distributed integrating indicators of process across a range of scales (micro to diffuse) of relevance to the problem of diffuse pollution assessment. Copyright ?? 2006 John Wiley & Sons, Ltd.

Hydrological Processes↗

USGS2014

Mercury in the nation's streams - Levels, trends, and implications

Mercury is a potent neurotoxin that accumulates in fish to levels of concern for human health and the health of fish-eating wildlife. Mercury contamination of fish is the primary reason for issuing fish consumption advisories, which exist in every State in the Nation. Much of the mercury originates from combustion of coal and can travel long distances in the atmosphere before being deposited. This can result in mercury-contaminated fish in areas with no obvious source of mercury pollution. Three key factors determine the level of mercury contamination in fish - the amount of inorganic mercury available to an ecosystem, the conversion of inorganic mercury to methylmercury, and the bioaccumulation of methylmercury through the food web. Inorganic mercury originates from both natural sources (such as volcanoes, geologic deposits of mercury, geothermal springs, and volatilization from the ocean) and anthropogenic sources (such as coal combustion, mining, and use of mercury in products and industrial processes). Humans have doubled the amount of inorganic mercury in the global atmosphere since pre-industrial times, with substantially greater increases occurring at locations closer to major urban areas. In aquatic ecosystems, some inorganic mercury is converted to methylmercury, the form that ultimately accumulates in fish. The rate of mercury methylation, thus the amount of methylmercury produced, varies greatly in time and space, and depends on numerous environmental factors, including temperature and the amounts of oxygen, organic matter, and sulfate that are present. Methylmercury enters aquatic food webs when it is taken up from water by algae and other microorganisms. Methylmercury concentrations increase with successively higher trophic levels in the food web—a process known as bioaccumulation. In general, fish at the top of the food web consume other fish and tend to accumulate the highest methylmercury concentrations. This report summarizes selected stream studies conducted by the U.S. Geological Survey (USGS) since the late 1990s, while also drawing on scientific literature and datasets from other sources. Previous national mercury assessments by other agencies have focused largely on lakes. Although numerous studies of mercury in streams have been conducted at local and regional scales, recent USGS studies provide the most comprehensive, multimedia assessment of streams across the United States, and yield insights about the importance of watershed characteristics relative to mercury inputs. Information from other environments (lakes, wetlands, soil, atmosphere, glacial ice) also is summarized to help understand how mercury varies in space and time.

Circular↗

USGS2016

Structure and spatial patterns of macrobenthic community in Tai Lake, a large shallow lake, China

Tai Lake (Chinese: Taihu ), the third-largest freshwater lake in China, suffers from harmful cyanobacteria blooms that are caused by economic development and population growth near the lake. Several studies have focused on phytoplankton in Tai Lake after a drinking water crisis in 2007; however, these studies primarily focused on microcystin bioaccumulation and toxicity to individual species without examining the effects of microcystin on macrobenthic community diversity. In this study, we conducted a survey of the lake to examine the effects of microcystine and other pollutants on marcobenthic community diversity. A totally of forty-nine species of macroinvertebrates were found in Tai Lake. Limnodrilus hoffmeisteri and Corbicula fluminea were the most abundant species. Cluster-analysis and one-way analysis of similarity (ANOSIM) identified three significantly different macrobenthic communities among the sample sites. More specifically, sites in the eastern bays, where aquatic macrophytes were abundant, had the highest diversity of macrobenthic communities, which were dominated by Bellamya aeruginosa , Bellamya purificata , L. hoffmeisteri , and Alocinma longicornis . Sites in Zhushan Bay contained relatively diverse communities, mainly composed of L. hoffmeisteri , C. fluminea , L. claparederanus , R. sinicus , and Cythura sp. Sites in the western region, Meiliang Bay and Wuli Bay had the lowest diversity, mainly composed of L. hoffmeisteri , C. fluminea , Branchiura sowerbyi , and Rhyacodrilus sinicus . In addition, the relationships between macrobenthic metrics (Shannon–Wiener, Margalef, and Pielou) and environmental variables showed that community structure and spatial patterns of macrobenthos in Tai Lake were significantly influenced by chemical oxygen demand (COD Cr ), biochemical oxygen demand (BOD 5 ), lead (Pb), and microcystin-LR (L for leucine and R for arginine). Our findings provide critical information that could help managers and policymakers assess and modify ecological restoration practices.

Tai Lake↗

USGS1996

Assessment of water quality in the South Indian River Water Control District, Palm Beach County, Florida, 1989-94

The South Indian River Water Control District is located in an area of northern Palm Beach County, Fla., where many residents must rely on private wells for domestic water supplies and individual septic tanks for waste disposal. As a result, contamination of the surficial aquifer system and availability of a potable water supply have become of increasing concern. To address this concern, the U.S. Geological Survey, in cooperation with the South Indian River Water Control District, conducted a study to assess ground-water and surface-water quality in the District from 1989 to 1994. The study consisted of water-quality monitoring at 11 wells and 14 surface-water sites located within the District. Water samples were analyzed for major inorganic constituents and physical characteristics, trace metals, nitrogen and phosphorus species, and synthetic organic compounds. The predominant water type within the South Indian River Water Control District is calcium bicarbonate; however, mixed-ion type water and sodium bicarbonate type water also exist in varying amounts. Sodium chloride type water is present in the western areas of the District due to incompletely flushed residual sea water. Results of the study indicated that concentrations of most constituents were within State drinking-water standards as established by the Florida Department of Environmental Protection, but concentrations of certain constituents occasionally exceeded drinking-water standards in some ground-water and surface-water samples. Sodium and chloride concentrations exceeded the standards in ground water at two wells, dissolved-solids concentrations at five ground-water wells and one surface-water site, and color values at all 11 ground-water wells and all 14 surface-water sites. Other constituents also exhibited concentrations that exceeded drinking-water standards. Cadmium and zinc concentrations exceeded the standards in ground water at one well, and lead concentrations exceeded the standard in ground water at five wells. Nitrogen and phosphorus specie concentrations did not exceed respective drinking-water standards in any ground-water or surface-water samples. Additionally, organic compounds were not detected at four surface-water sites monitored for National Pollutant Discharge Elimination System constituents. Several synthetic organic compounds were detected at or above 50 micrograms per liter in water samples collected from six ground-water wells and three surface-water sites.

Florida↗

USGS2012

Global exploration and production capacity for platinum-group metals from 1995 through 2015

Platinum-group metals (PGMs) are required in a variety of commercial, industrial, and military applications for many existing and emerging technologies, yet the United States is highly dependent on foreign sources of PGMs. Information on global exploration for PGMs since 1995 has been used in this study as a basis for identifying locations where the industry has determined that exploration has provided data sufficient to warrant development of a new mine or expansion of an existing operation or where a significant increase in capacity for PGMs is anticipated by 2015. Discussions include an overview of the industry and the selected sites, factors affecting mineral supply, and circumstances leading to the development of mineral properties with the potential to affect mineral supply. Of the 52 sites or regional operations that were considered in this analysis, 16 sites were producing before 1995, 28 sites commenced production from 1995 through 2010, and 8 sites were expected to begin production from 2011 through 2015 if development plans came to fruition. The United States imports PGMs primarily from Canada, Russia, South Africa, and Zimbabwe to meet increasing demand for these materials in a variety of specialized and high-tech applications. Feed sources of PGMs are changing in South Africa and Russia, which together accounted for about 89 percent of platinum production and 82 percent of palladium production in 2009. A greater amount of South African PGM capacity is likely to come from deeper, higher cost Upper Group Reef seam 2 deposits and deposits in the Eastern Bushveld area. Future Russian PGM capacity is likely to come from ore zones with generally lower PGM content and different platinum-to-palladium ratios than the nickel-rich ore that dominated PGM supply in the 1990s. Because PGM supply from Canada and Russia is derived as a byproduct of copper and nickel mining, the PGM supply from these countries is influenced by economic, environmental, political, and technological factors affecting exploration for and development of copper and nickel, as well as factors affecting the PGM industry. The recovery of PGMs from mill tailings since 2004 and the recycling of PGMs from catalytic converters, electrical components, and jewelry has increased since 1995 so that recycled PGMs recovered from these products accounted for about 30 percent of the supply of platinum worldwide and 29 percent of the supply of palladium worldwide in 2010. Economic and geopolitical conditions have influenced PGM supply and demand. The global recession of 2008 and 2009 temporarily decreased demand for PGMs and constrained PGM mine exploration and development, at least through 2010. Legislation regulating the structure of the mining sector has affected mining in Russia, South Africa, and Zimbabwe. Stricter vehicle emissions standards in established markets since the 1980s have led to mandatory use of pollution control devices, such as catalytic converters, that contain PGMs and are required on vehicles in expanding markets, such as China and India. It is expected that South Africa, Russia, Canada, and Zimbabwe will continue to be the principal sources of PGM at least for the next decade. Based on this review of the PGM industry, the world’s platinum capacity, expressed in terms of recoverable platinum metal, increased from 1995 through 2010 by 77,000 kilograms (kg) in South Africa, 9,000 kg in Zimbabwe, 6,000 kg in Russia, 2,000 kg in Botswana, and 2,000 kg in Canada. For the same period, palladium capacity worldwide increased by 44,000 kg in South Africa, 22,000 kg in Russia, 8,000 kg in Canada, 8,000 kg in the United States, 7,000 kg in Zimbabwe, and 3,000 kg in Botswana. Platinum capacity worldwide is expected to further increase by 24,000 kg in South Africa, 9,000 kg in Russia, 3,000 kg in Canada, and 2,000 kg in Zimbabwe from 2011 through 2015. Palladium capacity worldwide is likewise expected to increase an additional 16,000 kg in Russia, 14,000 kg in South Africa, 4,000 kg in Zimbabwe, and 1,000 kg in Canada if new or expanded mine and associated processing capacity comes into production as planned. It is likely that the magnitude of these changes in PGM capacity has been influenced by such factors as the global economy, electrical capacity shortages and mine safety concerns in South Africa, and geopolitical conditions in the major PGM producing countries.

Scientific Investigations Report↗

USGS2015

Summary of urban stormwater quality in Albuquerque, New Mexico, 2003-12

Urban stormwater in the Albuquerque metropolitan area was sampled by the U.S. Geological Survey in cooperation with the City of Albuquerque, the Albuquerque Metropolitan Arroyo Flood Control Authority, the New Mexico Department of Transportation, and the University of New Mexico. Stormwater was sampled from a network of monitoring stations from 2003 to 2012 by following regulatory requirements for the National Pollutant Discharge Elimination System stormwater permit. During this period, stormwater was sampled in the Albuquerque metropolitan area at outfalls from nine drainage basins with residential, industrial, commercial, agricultural, and undeveloped land uses. Stormwater samples were analyzed for selected physical and chemical characteristics, nutrients, major ions, metals, organic compounds, and bacteria. General quality of stormwater samples, as measured by dissolved solids, nutrient (with the exception of phosphorus), major ion, and dissolved metal concentrations, was similar to that in samples from the Rio Grande. Of the nearly 200 organic compounds that were analyzed for this study, less than one-third (58 constituents) were positively identified at or above the analytical detection limit in stormwater. Concentrations for volatile organic compounds, semivolatile organic compounds, polychlorinated biphenyls, and pesticides were generally low in the stormwater samples. Fifteen of the 16 polycyclic aromatic hydrocarbons listed on the U.S. Environmental Protection Agency Priority Chemicals list were detected in at least one stormwater sample from each outfall. Maximum concentrations for some polycyclic aromatic hydrocarbons in stormwater did exceed a water-quality criterion. Median concentrations for Escherichia coli ( E. coli ) bacteria in the stormwater samples, including those from the background location (Embudo Arroyo), were above the New Mexico water-quality standard. Concentrations for E. coli in stormwater often exceeded the water-quality criterion. The stormwater quality in Albuquerque was compared with that of six other Western U.S. cities (Phoenix, Arizona; Tucson, Arizona; Las Vegas, Nevada; Denver, Colorado; Salt Lake City, Utah; and Boise, Idaho) for selected constituents. In general, water-quality data for stormwater samples from these six other Western U.S. cities were similar to water-quality data for the stormwater samples from the Albuquerque outfalls. Median concentrations for suspended solids, total phosphorus, and bacteria ( E. coli and fecal coliform) in stormwater samples from the Albuquerque outfalls, as a whole, were higher than those in samples from the other Western U.S. cities except for Las Vegas.

New Mexico↗

USGS1995

Inter-relation of cytochrome P450 and contaminants burdens in sibling heron embryos and nestlings

Hepatic cytochrome P450-associated monooxygenase activities were measured in 11-day-old nestling black-crowned night-herons (Nycticorax nycticorax) collected from a reference site (next to the Chincoteague National Wildlife Refuge, Virginia) and three polluted sites (Cat Island, Green Bay, Lake Michigan, Wisconsin; Bair Island, San Francisco Bay, California; West Marin Island, San Francisco Bay, California). Activities of arylhydrocarbon hydroxylase (AHH) and benzyl-oxyresorufin-O-dealkylase (BROD) weremodestly elevated (<three-fold) in nestlings from polluted sites. Concentrations of p,p?DDE, other organochlorinepesticides and total PCBs in nestlings were greatest at contaminated sites, although much lower than found in concurrently collected eggs and pipping embryos. At these low pollutant concentrations there was little correlation between monooxygenase activity and contaminant levels in nestlings. These observations markedly contrast the pronounced monooxygenase induction (up to 85-fold) and its significant correlation with total PCBs, arylhydrocarbon receptor-active PCB congeners and toxic equivalents in concurrently collected night-heron embryos that were often siblings of the nestlings. The present findings suggest that cytochrome P450-associated monooxygenase activity of heron nestlings may have only limited value as a biomarker of exposure at this rapid-growth life stage.

Society of Environmental Toxicology and Chemistry,↗

USGS2015

A comparison of thermal infrared to fiber-optic distributed temperature sensing for evaluation of groundwater discharge to surface water

Groundwater has a predictable thermal signature that can be used to locate discrete zones of discharge to surface water. As climate warms, surface water with strong groundwater influence will provide habitat stability and refuge for thermally stressed aquatic species, and is therefore critical to locate and protect. Alternatively, these discrete seepage locations may serve as potential point sources of contaminants from polluted aquifers. This study compares two increasingly common heat tracing methods to locate discrete groundwater discharge: direct-contact measurements made with fiber-optic distributed temperature sensing (FO-DTS) and remote sensing measurements collected with thermal infrared (TIR) cameras. FO-DTS is used to make high spatial resolution (typically m) thermal measurements through time within the water column using temperature-sensitive cables. The spatialtemporal data can be analyzed with statistical measures to reveal zones of groundwater influence, however, the personnel requirements, time to install, and time to georeference the cables can be burdensome, and the control units need constant calibration. In contrast, TIR data collection, either from handheld, airborne, or satellite platforms, can quickly capture point-in-time evaluations of groundwater seepage zones across large scales. However the remote nature of TIR measurements means they can be adversely influenced by a number of environmental and physical factors, and the measurements are limited to the surface skin temperature of water features. We present case studies from a range of lentic to lotic aquatic systems to identify capabilities and limitations of both technologies and highlight situations in which one or the other might be a better instrument choice for locating groundwater discharge. FO-DTS performs well in all systems across seasons, but data collection was limited spatially by practical considerations of cable installation. TIR is found to consistently locate groundwater seepage zones above and along the streambank, but submerged seepage zones are only well identified in shallow systems (e.g. <0.5 m depth) with moderate flow. Winter data collection, when groundwater is relatively warm and buoyant, increases the water surface expression of discharge zones in shallow systems.

Massachusetts, Michigan, Montana, New York, Pennsy↗

USGS1996

Cytochrome P450 and contaminant concentrations in nestling black-crowned night-herons and their interrelation with sibling embryos

Hepatic cytochrome P450-associated monooxygenase activities were measured in 11-d-old nestling black-crowned night-herons ( Nycticorax nycticorax ) collected from a reference site (next to Chincoteague National Wildlife Refuge, VA, USA) and three contaminated sites (Cat Island, Green Bay, WI, USA; Bair Island, San Francisco Bay, CA, USA; and West Marin Island, San Francisco Bay, CA, USA). Arylhydrocarbon hydroxylase and benzyloxyresorufin- O -dealkylase activities of nestlings from contaminated sites were only slightly elevated (less than threefold) compared with the reference site. Organochlorine pesticide and total polychlorinated biphenyl (PCB) concentrations in nestlings were greatest at contaminated sites, although much lower than found in concurrently collected eggs and pipping embryos. Pollutant concentrations of nestlings were rarely associated with monooxygenase activity. In contrast, concurrently collected pipping heron embryos (often siblings of the nestlings) exhibited pronounced monooxygenase induction (means at contaminated sites were elevated up to sevenfold and values of some embryos exceeded 25-fold induction). Furthermore, monooxygenase activity of pipping embryos was significantly correlated with total PCBs, arylhydrocarbon receptor-active PCB congeners, and toxic equivalents. The modest monooxygenase responses of heron nestlings suggest that this biomarker may have only limited value during this rapid-growth life stage.

California, Virginia, Wisconsin↗

USGS1995

Oil, biological communities and contingency planning

The Oil Pollution Act of 1990 mandates the inclusion of a fish and wildlife response plan in the National Contingency Plan (NCP) and the creation of Area Committees that must develop an Area Contingency Plan (ACP). Area Contingency Plans must include a detailed annex containing a Fish and Wildlife and Sensitive Environments Plan. Tank vessels, offshore facilities, and certain onshore facilities must have response plans consistent with the requirements of the NCP and the ACP. New regulations to supersede the Type A and B procedures of the Natural Resources Damage Assessment Regulations are being developed for oil spills. Currently, four assessment methods have been proposed: (1) Type A, (2) comprehensive (Type B), (3) intermediate (between types A and B), and (4) compensation tables. The Oil Spill Liability Trust Fund is approaching its ceiling of $1 billion, but only $50 million has been appropriated. Effective biological contingency planning requires extensive knowledge of (1) the environmental fate of petroleum, (2) the effects of petroleum on organisms, (3) the existing biological resources, and (4) the establishment of a system of biological priorities. The characteristics and fate of petroleum and the biological effects of petroleum are reviewed. Assessment of biological resources includes plant and animal distributions, important habitat, endangered or threatened species, and economic considerations. The establishment by Area Committees of priorities for environmental protection, injury assessment, and restoration will promote efficient spill response. Three special issues are discussed: (1) improving our ability to restore natural resources, (2) the potential role of biological diversity in spill response planning, and (3) planning for animal rehabilitation.

Book chapter↗

USGS2020

An ecological and conservation perspective

Natural ecosystems are facing unprecedented threats which directly threaten human well-being through decreases in critical ecosystem services (IPBES 2019). The top five drivers causing the largest global impacts to biodiversity and ecosystem services include: 1) changes in land and sea use; 2) direct exploitation of organisms; 3) climate change; 4) pollution, and 5) invasive alien species (IPBES 2019). Although One Health acknowledges the link between the health of humans, animals, and the environment, One Health discussions have historically focused on the prevention and control of infectious disease at the human-animal interface rather than these large-scale drivers of health. While One Health has succeeded in bringing awareness to the need for proactive disease control measures such as strengthened biosecurity and vaccine development (e.g., Machalaba et al., 2018; Middleton et al., 2014), disease is only one component of health. In this chapter, we explore the potential for One Health to shift its focus from disease prevention to health promotion to more fully integrate solutions that protect the health of humans, animals, and the ecosystems on which we all depend for our economies, livelihoods, food security, and health. This shift will facilitate a more seamless inclusion of ecological health and environmental conservation in the One Health paradigm and can serve as the basis for a comprehensive approach to complex problems at the root of global health. We also suggest a framework for creating and applying health metrics for wildlife and ecological systems that will be essential for measuring the success of actions aimed at maintaining or shifting systems to desired states.

Book chapter↗

USGS2012

MiniSipper: A new in situ water sampler for high-resolution, long-duration acid mine drainage monitoring

Abandoned hard-rock mines can be a significant source of acid mine drainage (AMD) and toxic metal pollution to watersheds. In Colorado, USA, abandoned mines are often located in remote, high elevation areas that are snowbound for 7–8 months of the year. The difficulty in accessing these remote sites, especially during winter, creates challenging water sampling problems and major hydrologic and toxic metal loading events are often under sampled. Currently available automated water samplers are not well suited for sampling remote snowbound areas so the U.S. Geological Survey (USGS) has developed a new water sampler, the MiniSipper, to provide long-duration, high-resolution water sampling in remote areas. The MiniSipper is a small, portable sampler that uses gas bubbles to separate up to 250 five milliliter acidified samples in a long tubing coil. The MiniSipper operates for over 8 months unattended in water under snow/ice, reduces field work costs, and greatly increases sampling resolution, especially during inaccessible times. MiniSippers were deployed in support of an U.S. Environmental Protection Agency (EPA) project evaluating acid mine drainage inputs from the Pennsylvania Mine to the Snake River watershed in Summit County, CO, USA. MiniSipper metal results agree within 10% of EPA-USGS hand collected grab sample results. Our high-resolution results reveal very strong correlations (R 2 > 0.9) between potentially toxic metals (Cd, Cu, and Zn) and specific conductivity at the Pennsylvania Mine site. The large number of samples collected by the MiniSipper over the entire water year provides a detailed look at the effects of major hydrologic events such as snowmelt runoff and rainstorms on metal loading from the Pennsylvania Mine. MiniSipper results will help guide EPA sampling strategy and remediation efforts in the Snake River watershed.

Colorado↗

USGS2010

Assessment and management of ecological integrity: Chapter 12

Assessing and understanding the impacts of human activities on aquatic ecosystems has long been a focus of ecologists, water resources managers, and fisheries scientists. While traditional fisheries management focused on single-species approaches to enhance fish stocks, there is a growing emphasis on management approaches at community and ecosystem levels. Of course, as fisheries managers shift their attention from narrow (e.g., populations) to broad organizational scales (e.g., communities or ecosystems), ecological processes and management objectives become more complex. At the community level, fisheries managers may strive for a fish assemblage that is complex, persistent, and resilient to disturbance. Aquatic ecosystem level objectives may focus on management for habitat quality and ecological processes, such as nutrient dynamics, productivity, or trophic interactions, but a long-term goal of ecosystem management may be to maintain ecological integrity. However, human users and social, economic, and political demands of fisheries management often result in a reduction of ecological integrity in managed systems, and this conflict presents a principal challenge for the modern fisheries manager. The concepts of biotic integrity and ecological integrity are being applied in fisheries science, natural resource management, and environmental legislation, but explicit definitions of these terms are elusive. Biotic integrity of an ecosystem may be defined as the capability of supporting and maintaining an integrated, adaptive community of organisms having a species composition, diversity, and functional organization comparable to that of a natural habitat of the region (Karr and Dudley 1981). Following that, ecological integrity is the summation of chemical, physical, and biological integrity. Thus, the concept of ecological integrity extends beyond fish and represents a holistic approach for ecosystem management that is especially applicable to aquatic systems. The more general term, ecological condition, refers to the state of the physical, chemical, and biological characteristics of the environment and the processes and interactions that connect them. While the concept of ecological integrity may appear unambiguous, its assessment and practice are much less clear. Ecological integrity made its debut in the USA with the Clean Water Act (CWA) of 1972 (Federal Water Pollution Control Act, as amended through Public Law 107–303, November 27, 2002), which states only one objective, “to restore and maintain the chemical, physical, and biological integrity of the Nation’s waters.” This legislation compelled resource managers to focus on chemical pollution from point effluent sources, such as industrial and municipal outflows, as well as give attention to diffuse, chronic, and watershed effects on ecological integrity. Further, the CWA allowed pursuit of restoration programs in degraded water bodies and catalyzed the science and practice of restoration ecology. The term ecosystem health is often raised in discussions of ecological integrity. Perhaps it is natural to anthropomorphize our concern for personal health to ecosystems, so it becomes a useful metaphor for understanding the concept of ecological integrity. However, whether or not an ecosystem should be considered an entity, such as a superorganism, is a debate without end that began with early ecologists and continues today (Clements 1916; Suter 1993; Simon 1999a). Regardless, the ecosystem is indeed a natural unit with a level of organization and properties beyond the collection of those species that occupy it and presents the most appropriate spatial and organizational scale in which to assess and study ecological integrity. Streams and rivers serve as integrators of chemical, physical, and biological conditions across the landscape, and while the theory and practice associated with ecological integrity of aquatic systems is easily applied to flowing waters and is emphasized in this chapter, they are broadly applicable among all aquatic systems.

Book chapter↗

USGS2002

Sequestration of priority pollutant PAHs from sediment pore water employing semipermeable membrane devices

Semipermeable membrane devices (SPMDs) were employed to sample sediment pore water in static exposure studies under controlled laboratory conditions using (control pond and formulated) sediments fortified with 15 priority pollutant polycyclic aromatic hydrocarbons (PPPAHs). The sediment fortification level of 750 ng/g was selected on the basis of what might be detected in a sediment sample from a contaminated area. The sampling interval consisted of 0, 4, 7, 14, and 28 days for each study. The analytical methodologies, as well as the extraction and sample cleanup procedures used in the isolation, characterization, and quantitation of 15 PPPAHs at different fortification levels in SPMDs, water, and sediment were reported previously (Williamson, M.S. Thesis, University of Missouri - Columbia, USA; Williamson et al., Chemosphere (This issue - PII: S0045-6535(02)00394-6)) and used for this project. Average (mean) extraction recoveries for each PPPAH congener in each matrix are reported and discussed. No procedural blank extracts (controls) were found to contain any PPPAH residues above the method quantitation limit, therefore, no matrix interferences were detected. The focus of this publication is to demonstrate the ability to sequester environmental contaminants, specifically PPPAHs, from sediment pore water using SPMDs and two different types of fortified sediment.

Chemosphere↗

USGS2002

A review of bacterial methyl halide degradation: Biochemistry, genetics and molecular ecology

Methyl halide‐degrading bacteria are a diverse group of organisms that are found in both terrestrial and marine environments. They potentially play an important role in mitigating ozone depletion resulting from methyl chloride and methyl bromide emissions. The first step in the pathway(s) of methyl halide degradation involves a methyltransferase and, recently, the presence of this pathway has been studied in a number of bacteria. This paper reviews the biochemistry and genetics of methyl halide utilization in the aerobic bacteria Methylobacterium chloromethanicum CM4 T , Hyphomicrobium chloromethanicum CM2 T , Aminobacter strain IMB‐1 and Aminobacter strain CC495. These bacteria are able to use methyl halides as a sole source of carbon and energy, are all members of the α ‐Proteobacteria and were isolated from a variety of polluted and pristine terrestrial environments. An understanding of the genetics of these bacteria identified a unique gene ( cmuA ) involved in the degradation of methyl halides, which codes for a protein (CmuA) with unique methyltransferase and corrinoid functions. This unique functional gene, cmuA , is being used to develop molecular ecology techniques to examine the diversity and distribution of methyl halide‐utilizing bacteria in the environment and hopefully to understand their role in methyl halide degradation in different environments. These techniques will also enable the detection of potentially novel methyl halide‐degrading bacteria.

Environmental Microbiology↗

USGS2018

Hydrologic characteristics of freshwater mussel habitat: novel insights from modeled flows

The ability to model freshwater stream habitat and species distributions is limited by the spatially sparse flow data available from long-term gauging stations. Flow data beyond the immediate vicinity of gauging stations would enhance our ability to explore and characterize hydrologic habitat suitability. The southeastern USA supports high aquatic biodiversity, but threats, such as landuse alteration, climate change, conflicting water-resource demands, and pollution, have led to the imperilment and legal protection of many species. The ability to distinguish suitable from unsuitable habitat conditions, including hydrologic suitability, is a key criterion for successful conservation and restoration of aquatic species. We used the example of the critically endangered Tar River Spinymussel ( Parvaspina steinstansana ) and associated species to demonstrate the value of modeled flow data (WaterFALL™) to generate novel insights into population structure and testable hypotheses regarding hydrologic suitability. With ordination models, we: 1) identified all catchments with potentially suitable hydrology, 2) identified 2 distinct hydrologic environments occupied by the Tar River Spinymussel, and 3) estimated greater hydrological habitat niche breadth of assumed surrogate species associates at the catchment scale. Our findings provide the first demonstrated application of complete, continuous, regional modeled hydrologic data to freshwater mussel distribution and management. This research highlights the utility of modeling and data-mining methods to facilitate further exploration and application of such modeled environmental conditions to inform aquatic species management. We conclude that such an approach can support landscape-scale management decisions that require spatial information at fine resolution (e.g., enhanced National Hydrology Dataset catchments) and broad extent (e.g., multiple river basins).

North Carolina↗

USGS2014

Pharmaceutical compounds in shallow groundwater in non-agricultural areas of Minnesota: study design, methods, and data, 2013

The U.S. Geological Survey, in cooperation with the Minnesota Pollution Control Agency, completed a study on the occurrence of pharmaceutical compounds and other contaminants of emerging concern in shallow groundwater in non-agricultural areas of Minnesota during 2013. This report describes the study design and methods for the study on the occurrence of pharmaceuticals and other contaminants of emerging concern, and presents the data collected on pharmaceutical compounds. Samples were analyzed by the U.S. Geological Survey National Water Quality Laboratory for 110 pharmaceutical compounds using research method 9017. Samples from 21 of 45 wells had detectable concentrations of at least one of the 110 compounds analyzed. One sample contained detectable concentrations of nine compounds, which was the most detected in a single sample. Fewer than five compounds were detected in most samples. Among all samples, 27 of the 110 compounds were detected in groundwater from at least one well. Desmethyldiltiazem and nicotine were the most frequently detected compounds, each detected in 5 of 46 environmental samples (one well was sampled twice so a total of 46 environmental samples were collected from 45 wells). Caffeine had the highest detectable concentration of all the compounds at 2,060 nanograms per liter.

Minnesota↗

USGS2004

Compound-specific carbon and hydrogen isotope analysis of sub-parts per billion level waterborne petroleum hydrocarbons

Compound-specific carbon and hydrogen isotope analysis (CSCIA and CSHIA) has been increasingly used to study the source, transport, and bioremediation of organic contaminants such as petroleum hydrocarbons. In natural aquatic systems, dissolved contaminants represent the bioavailable fraction that generally is of the greatest toxicological significance. However, determining the isotopic ratios of waterborne hydrophobic contaminants in natural waters is very challenging because of their extremely low concentrations (often at sub-parts ber billion, or even lower). To acquire sufficient quantities of polycyclic aromatic hydrocarbons with 10 ng/L concentration for CSHIA, more than 1000 L of water must be extracted. Conventional liquid/liquid or solid-phase extraction is not suitable for such large volume extractions. We have developed a new approach that is capable of efficiently sampling sub-parts per billion level waterborne petroleum hydrocarbons for CSIA. We use semipermeable membrane devices (SPMDs) to accumulate hydrophobic contaminants from polluted waters and then recover the compounds in the laboratory for CSIA. In this study, we demonstrate, under a variety of experimental conditions (different concentrations, temperatures, and turbulence levels), that SPMD-associated processes do not induce C and H isotopic fractionations. The applicability of SPMD-CSIA technology to natural systems is further demonstrated by determining the ??13C and ??D values of petroleum hydrocarbons present in the Pawtuxet River, RI. Our results show that the combined SPMD-CSIA is an effective tool to investigate the source and fate of hydrophobic contaminants in the aquatic environments.

Environmental Science & Technology↗