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Changes in thyroid parameters of hatchling American kestrels ( Falco sparverius ) following embryonic exposure to technical short chain chlorinated paraffins (SCCPs; C 10-13 , 55.5% CL)

Chlorinated paraffins (CPs) are complex mixtures of polychlorinated n-alkanes categorized according to their carbon chain length: short chain (SCCPs, C10 – C13), medium (C14 - C17), and long chain (C>17), chlorinated paraffins. SCCPs are primarily used in metalworking applications, as flame retardants, and in paints, adhesives, sealants, textiles, plastics and rubber (UNEP 2012). In 2012, the United Nations Environment Program (UNEP 2012) reported in the Revised Draft Risk Profile for SCCPs, that CPs were produced in the United States, the European Union (EU), Slovakia, Brazil, India, Japan and China. While annual global consumption of SCCPs is large (>25 tonnes/year), it has sharply declined over the past 20 years. SCCPs are released through wastewater, landfills, and air emissions (UNEP 2012). Concentrations of SCCPs have been reported in fish and marine mammals in North and South America, Europe, Japan, Greenland and the Arctic (UNEP 2012 and references therein). Characterization of SCCP concentrations and exposure in terrestrial wildlife is limited. In 2010, SCCP concentrations were reported in the eggs of yellow-legged gulls (Larus michahellis) (4536 ± 40 pg/g wet weight (ww)) and Audouin’s gulls (Larus audouinii) (6364 ± 20 pg/g ww) in Spain (Morales et al. 2012), and little auks (Alle alle) (5 - 88 ng/g ww) and kittiwakes (Rissa tridactyla) (5 - 44 ng/g ww) in the European Arctic (Reth et al. 2006). In Sweden, muscle of ospreys contained CPs of unspecified chain length (Jansson et al. 1993). Although the toxicity of SCCPs has been demonstrated in aquatic invertebrates, fish, frogs, and laboratory rats, there are limited avian studies and these reported no effects of SCCPs on egg parameters of domestic hens (Gallus gallus domesticus) and ducks (Anas platyrhynchos) (UNEP 2012). Despite reported accumulation of SCCPs in wild birds, to our knowledge, exposure-related toxicities and effects with respect to avian wildlife remain unknown.

Organohalogen Compounds

Data from theodolite measurements of creep rates on San Francisco Bay region faults, California: 1979-2007

Introduction Our purpose is to update with six additional years of data, our creep data archive on San Francisco Bay region active faults for use by the scientific research community. Earlier data (1979-2001) were reported in Galehouse (2002) and were analyzed and described in detail in a summary report (Galehouse and Lienkaemper, 2003). A complete analysis of our earlier results obtained on the Hayward fault was presented in Lienkaemper, Galehouse and Simpson (2001). Jon Galehouse of San Francisco State University (SFSU) and many student research assistants measured creep (aseismic slip) rates on these faults from 1979 until his retirement from the project in 2001. The creep measurement project, which was initiated by Galehouse, has continued through the Geosciences Department at SFSU from 2001-2006 under the direction of Co-P.I.'s Karen Grove and John Caskey (Grove and Caskey, 2005), and by Caskey since 2006. Forrest McFarland has managed most of the technical and logistical project operations as well as data processing and compilation since 2001. We plan to publish detailed analyses of these updated creep data in future publications. We maintain a project web site (http://funnel.sfsu.edu/creep/) that includes the following information: project description, project personnel, creep characteristics and measurement, map of creep measurement sites, creep measurement site information, and data plots for each measurement site. Our most current, annually updated results are therefore accessible to the scientific community and to the general public. Information about the project can currently be requested by the public by an email link (fltcreep@sfsu.edu) found on our project website.

California

U.S. Geological Survey second national symposium on Water quality; abstracts of the technical sessions, Orlando, Florida, November 12-17, 1989

The U.S Geological Survey (USGS) compiled and analyzed existing hydrologic and water-quality data from over 200 stream and estuary stations of the Abemarle-Pamlico estuarine system (A/P) to identify long-term temporal and spatial trends. The dataset included seven stations of the USGS National Stream Quality Accounting Network, two stations of the National Atmospheric Precipitation Deposition monitoring network, stations of the N.C. Department of Natural Resources and Community Development, and stations from 25 reports by individual investigators. Regression-residuals analysis, the seasonal Kendall's Tau test for trends, and graphical analysis using annual box plots were employed to determine trends. Profound change has occurred in the water quality of the A/P area over the last 30 years. Analysis of water-quality data upstream from the estuaries indicates increases of discharge-adjusted values of specific conductance, alkalinity, phosphorous, hardness, chloride, and dissolved solids. In the estuaries, pH is increasing except in the Pamlico River, where it is decreasing. There is a generalized decrease in suspended inorganic material in the system. Salinities are decreasing for sections of the Pamlico River, and increasing for parts of Albemarle Sound. Nitrogen concentrations are decreasing except in the Pamlico River, where they are increasing. Phosphorus concentrations are increasing in the Pamlico River and decreasing elsewhere. Annual average data show that nitrogen is the limiting nutrient in the Neuse and Pamlico Rivers. Phosphorus is limiting in the rest of the area. Chlorophyll-a levels are increasing in parts of the Neuse and Pamlico Rivers and decreasing in parts of the Chowan River. To evaluate the effect of basin characteristics on water quality, linear correlation was used. Agricultural crop variables produced the most correlations with water-quality data. Fertilizer usage had little detectable relation to water quality in the study area. In the section of the Pamlico River near Aurora, relations between employment, road mileages, and water quality indicated effects of development in the area.

Open-File Report

Cyanobacteria Assessment Network: Pilot study with Sentinel-2 derived chlorophyll data

Harmful algal blooms (HABs) affect global water quality, limiting uses like recreation and consumption because of excessive algal biomass and toxin production. These blooms cause surface scums, taste and odor issues, hypoxia, and negative health and socioeconomic impacts. The US Army Corps of Engineers (USACE) manages over 400 lakes and reservoirs and seeks to improve monitoring of HABs through Sentinel-2 (S2) satellite imagery. The purpose of this project is to develop workflows for a national chlorophyll-a product with 20 m spatial resolution, enabling HAB monitoring for over 270,000 lakes and reservoirs. The 1-year pilot study established a federal partnership to conduct preliminary S2 processing steps, using datasets from Florida, Ohio, and Oregon. Key steps included in situ data aggregation, data assimilation, S2 algorithm evaluation, spatial and temporal compositing, satellite sensor cross-validation, and web hosting of an example prototype product. The study covers 29 USACE reservoirs, with cross-validation using Sentinel-3 (S3) data from 212 lakes. The multiagency initiative aligns with federal agency missions to protect health and the environment, supports acts like the 2017 Harmful Algal Bloom and Hypoxia Research and Control Act, and has annual potential avoided costs of $42 million.

contiguous United States

Water Resources Data for Massachusetts and Rhode Island, 1998

INTRODUCTION The Water Resources Division of the U.S. Geological Survey, in cooperation with State agencies, obtains a large amount of data pertaining to the water resources of Massachusetts and Rhode Island each water year. These data, accumulated during many water years, constitute a valuable data base for developing an improved understanding of the water resources of the States. To make these data readily available to interested parties outside the Geological Survey, the data are published annually in this report series entitled 'Water Resources Data-Massachusetts and Rhode Island.' Hydrologic data are also available through the Massachusetts-Rhode Island District Home Page on the world-wide web (http://ma.water.usgs.gov). Historical data and real-time data (for sites equipped with satellite gageheight telemeter) are also available. The home page also contains a link to the U.S. Geological Survey National Home Page where streamflow data from locations throughout the United States can be retrieved. This report series includes records of stage, discharge, and water quality of streams; contents of lakes and reservoirs; and water levels of ground-water wells. This volume contains discharge records at 93 gaging stations; monthend contents of 4 lakes and reservoirs; water quality at 22 gaging stations; and water levels for 139 observation wells. Locations of these sites are shown in figures 1 and 2. Miscellaneous hydrologic data were collected at various sites that were not involved in the systematic data-collection program and are published as miscellaneous discharge measurements. The data in this report represent that part of the National Water Data System operated by the U.S. Geological Survey and cooperating State and Federal agencies in Massachusetts and Rhode Island. This series of annual reports for Massachusetts and Rhode Island began with the 1961 water year with a report that contained only data relating to the quantities of surface water. For the 1964 water year, a similar report was introduced that contained only data relating to water quality. Beginning with the 1975 water year, the report format was changed to present, in one volume, data on quantities of surface water, quality of surface and ground water, and ground-water levels. Prior to introduction of this series and for several water years concurrent with it, water-resources data for Massachusetts and Rhode Island were published in U.S. Geological Survey Water-Supply Papers. Data on stream discharge and stage and on lake or reservoir contents and stage, through September 1960, were published annually under the title 'Surface-Water Supply of the United States, Parts 1A and 1B.' For the 1961 through 1970 water years, the data were published in two 5-year reports. Data on chemical quality, temperature, and suspended sediment for the 1941 through 1970 water years were published annually under the title 'Quality of Surface Waters of the United States,' and water levels for the 1939 through 1974 water years were published under the title 'Ground-Water Levels in the United States.' The above mentioned Water-Supply Papers may be consulted in the libraries of the principal cities of the United States and may be purchased from U.S. Geological Survey, Information Services, Box 25286, Denver Federal Center, Box 25425, Denver, CO 80225-0286. Publications similar to this report are published annually by the Geological Survey for all States. These official Survey reports have an identification number consisting of the two-letter State abbreviation, the last two digits of the water year, and the volume number. For example, this volume is identified as 'U.S. Geological Survey Water-Data Report MARI-98-1.' For archiving and general distribution, the reports for 1971-74 water years also are identified as water-data reports. These water-data reports are for sale in paper copy or in microfiche by the National Technical Information Service, U.S. Department of Comme

Water Data Report

Geological Survey Research 1966, Chapter A

'Geological Survey Research 1966' is the seventh annual review of the econamic and scientific work of the U.S. Geological Survey. As in previous years the purpose of the volume is to make available promptly to the public the highlights of Survey investigations. This year the volume consists of 4 chapters (A through D) of Professional Paper 550. Chapter A contains a summary of significant results, and the remaining chapters are made up of collections of short technical papers. Many of the results summarized in chapter A are discussed in greater detail in the short papers or in reports listed in 'Publications in Fiscal Year 1966,' beginning on page A265. The tables of contents for chapters B through D are listed on pages A259-A264. Numerous Federal, State, county, and municipal agencies listed on pages A211-A215 cooperated financially with the Geological Survey during fiscal 1966 and have contributed significantly to the results reported here. They are identified where appropriate in the short technical papers that have appeared in Geological Survey Research and in papers published cooperatively, but generally are not identified in the brief statements in chapter A. Many individuals on the staff of the Geological Survey have contributed to 'Geological Survey Research 1966.' Reference is made to only a few. Frank W. Trainer, Water Resources Division, was responsible for organizing and assembling chapter A and for critical review of papers in chapters B-D, assisted by Louis Pavlides, Geologic Division. Marston S. Chase, Publications Division, was in charge of production aspects of the series, assisted by Jesse R. Upperco in technical editing, and William H. Elliott and James R. Hamilton in planning and preparing illustrations. The volume for next year, 'Geological Survey Research 1967,' will be published as chapters af Professional Paper 5715. Previous volumes are listed below, with their series designations. Gealagical Survey Research 1960-Prof. Paper 400 Gealagical Survey Research 1961-Prof. Paper 424 Gealagical Survey Research 1962-Prof. Paper 450 Gealagical Survey Research 1963-Prof. Paper 475 Gealagical Survey Research 1964-Prof. Paper 501 Gealagical Survey Research 1965-Prof. Paper 525

Professional Paper

The Central African Republic Diamond Database—A geodatabase of archival diamond occurrences and areas of recent artisanal and small-scale diamond mining

The alluvial diamond deposits of the Central African Republic (CAR) are mined almost exclusively by way of informal artisanal and small-scale mining (ASM) methods. ASM sites range in diameter from a few meters to 30 meters or more, and are typically excavated by crews of diggers using hand tools, sieves, and jigs. CAR’s reported annual production has ranged from 300,000 to 470,000 carats over the past decade. This production is significant for CAR because it accounts for a large portion of the country’s export income and employs an estimated 60,000 to 90,000 miners nationally. Diamond production has also been linked to the violent conflict and political instability which have plagued the country for decades. The most recent conflict began in 2012 and resulted in an international embargo on the export of rough diamonds from CAR. This embargo was followed by a ceasefire and a return of peace in certain zones of the country in 2015; however, political and economic instability continues to afflict many areas of the country. International efforts to restore peace in CAR have included United Nations support as well as international technical assistance in tracking, assessing, and monitoring diamond production. In 2015, the Kimberley Process (KP) developed an operational framework allowing for legitimate exports from five subprefectures in CAR that were deemed to be compliant with KP internal controls and which were also considered to be free from systematic violence or control of armed groups. The goal of this study was to address information gaps regarding the location and extent of diamond occurrences and mining activity through the integration of geologic research with remote sensing, geographic information systems analysis, and fieldwork. Effective and efficient monitoring of diamond mining activity using satellite imagery requires detailed understanding of the geographic distribution of diamond sources and mining activities. A two-phase methodology was developed to address the knowledge gaps. The first phase consisted of the creation of a comprehensive geospatial catalogue of diamond mining and occurrence locations from archival records such as historical maps, mining reports, academic publications, and field data. Building upon this locational database, the second phase consisted of the creation of a geospatial dataset cataloguing current mining activity locations through manual interpretation of recently acquired satellite imagery. The accuracy of this second geospatial dataset was then assessed using field observations made between 2016 and 2017 by the U.S. Agency for International Development’s Property Rights and Artisanal Diamond Development II project. This report presents a two-part geodatabase: part 1 contains the locations of diamond mine sites and occurrences from archival sources, and part 2 indicates areas of current or recent mining activity. This geodatabase is unique in its temporal and spatial extent and may be used to analyze the geographic distribution of CAR’s known diamond resources, to assess the effect of recent violent conflicts and KP actions on diamond produc-tion, to provide decision makers with information regarding small-scale diamond mining, and to improve the monitoring of mining in regions of the country prone to conflict.

Open-File Report

Appendix 6: Overview of iPOM 2.0: Updates to wolf abundance estimation in Montana

Montana Fish, Wildlife and Parks (MFWP) uses the integrated Patch Occupancy Model (iPOM) to estimate statewide and regional wolf abundance. During the early years of recovery, wolf abundance was tracked using minimum counts. As the population increased, limitations of this method became apparent, motivating development of a model-based approach for estimating abundance. iPOM development began in 2006, was operationalized in 2013, and has been used in its current form (iPOM 1.0) since 2021. Since its inception, iPOM has been developed and presented as an adaptive modeling framework intended to evolve as new data and analytical methods become available1. Here, we briefly present ongoing work to produce the next iteration of iPOM, hereafter iPOM 2.0, and summarize major model updates and resulting preliminary wolf abundance estimates. iPOM uses models for occupancy, territory size, and pack size, along with monitoring data collected by MFWP wolf specialists and potential wolf sightings reported by deer and elk hunters during the 5-week general rifle season each Nov-Dec. These monitoring data, wolf sightings, and covariates for habitat and survey effort are used to model occupancy of packs on a statewide grid of 600-km 2 cells. The area used by wolves is then estimated as each cell’s occupancy estimate multiplied by grid cell area. iPOM estimates pack abundance by dividing this area by predicted territory sizes, and in-pack wolf abundance by multiplying pack abundance by estimated group size. This is combined with a lone wolf rate to estimate total wolf abundance (see Sells et al. 1 for a full description of iPOM 1.0). This technical summary provides a high-level overview of the proposed iPOM updates and their implications for wolf abundance estimates. The estimates presented here represent results as of June 2026 and are provided to inform upcoming discussions surrounding harvest management and regulations (e.g., season dates, quotas, methods). Results are preliminary and remain subject to final model refinement and peer review.

Montana

The commercial fishery in Lake Oahe, North and South Dakota, 1964-70

Ten species were commercially harvested in Lake Oahe, among which bigmouth buffalo (Ictiobus cyprinellus) predominated (63.8% of the total weight), smallmouth buffalo (Ictiobus bubalus) and goldeye (Hiodon alosoides) ranked second, and third. Variations in the seasonal and annual production of buffalo were governed by market conditions and availability. Production of minor species depended on the amount of fishing effort directed toward the harvest of buffalo. Gill and hoop nets were the principal fishing gears. The fishing season usually extended from April through December; most fishing was in May through August.

Technical Paper

Ground-water conditions in Salt Lake Valley, Utah, 1969-83, and predicted effects of increased withdrawals from wells

This report was prepared in cooperation with several organizations in the Salt Lake Valley and with the Central Utah Water Conservancy District to present results of a study to determine changes in the ground-water conditions in Salt Lake Valley, Utah, from 1969 to 1983, and to predict the aquifer response to projected withdrawals. The average annual recharge and discharge from the ground-water reservoir in Salt Lake Valley, Utah, during 1969-82 were estimated to be about 352,000 and 353,000 acre-feet per year. Withdrawals from wells increased from 107,000 acre-feet per year during 1964-68 to 117,000 acre-feet per year during 1969-82. The greatest increase in use was for public supply and institutions which increased from 35,000 acre-feet per year during 1964-68 to 46,700 acre-feet per year during 1969-82.

Utah

Summary of West Virginia Water-Resource Data through September 2008

The West Virginia Water Science Center of the U.S. Geological Survey, in cooperation with State and Federal agencies, obtains a large amount of data pertaining to the water resources of West Virginia each water year. A water year is the 12-month period beginning October 1 and ending September 30. These data, accumulated during many years, constitute a valuable database for developing an improved understanding of the water resources of the State. These data are maintained in the National Water Information System (NWIS) and are available through its World-Wide Web interface, NWISWeb, at http://waterdata.usgs.gov/wv/nwis. Data can be retrieved in a variety of common formats, and a tutorial is available at http://nwis.waterdata.usgs.gov/tutorial. Location information for all continuous-record gaging stations operated in West Virginia through September 2008 is provided in this report, as well as statistical summaries of the available daily records. This report can serve as an index to the daily records data available on the World-Wide Web. Hydrologic data for nearly all of the gaging stations identified in this report are also available in the annual publication series titled Water-Resources Data - West Virginia. This series of annual reports for West Virginia began with the 1961 water year with a report that contained only data relating to quantities of surface water. For the 1964 water year, a similar report was introduced that contained only data relating to water quality. Beginning with the 1975 water year, the report format was changed to include data on quantities of surface water, quality of surface water and groundwater, and groundwater levels. Prior to the introduction of the Water-Resources Data - West Virginia series and for several water years concurrent with it, water-resources data for West Virginia were published in U.S. Geological Survey Water-Supply Papers. Data on stream discharge and stage and on lake or reservoir contents and stage through September 1960 were published annually under the title Surface-Water Supply of the United States, Parts 6A and 6B. For the 1961 through 1970 water years, the data were published in two 5-year reports. Data on chemical quality, temperature, and suspended sediment for the 1941 through 1970 water years were published annually under the title Quality of Surface Water of the United States, and water levels for the 1935 through 1974 water years were published under the title Ground-Water Levels in the United States. Many of the above mentioned Water-Supply Papers are available at the USGS Publications Warehouse (http://pubs.er.usgs.gov), and most of the others may be found in the collections of large libraries or may be purchased from the U.S. Geological Survey, Books and Open-File Reports, Federal Center, Box 25425, Denver, Colorado 80225. Annual reports on hydrologic data are published by the Geological Survey for all states, and each has an identification number consisting of the two-letter state abbreviation, the last two digits of the water year, and the volume number. For example, the 2005 water year report for West Virginia is identified as U.S. Geological Survey Water-Data Report WV-05-01. Water-Data Reports for West Virginia for 2001-2005 are available online at http://pubs.usgs.gov/wdr/#WV. Water-Data Reports for water years prior to 2006 are for sale in paper copy or microfiche by the National Technical Information Service, U.S. Department of Commerce, Springfield, Virginia 22161. Since the 2006 water year, the report is published online only and is available at http://wdr.water.usgs.gov/. When substantial errors in published records are discovered, the records are revised. Such revisions are routine and are made to records regardless of the age of the original records. Revisions have been made for many stations for which data are published in this report. The USGS National Water Information System always contains the most recent data revisions. For critical a

Open-File Report

Hydrologic reconnaissance of the Dugway Valley-Government Creek area, West-Central Utah

The Dugway Valley-Government Creek area covers about 890 square miles (2,300 square kilometers) in west-central Utah. Total annual precipitation on the area averages about 380,000 acre-feet (470 cubic hectometers). Most streams are ephemeral except for a few in their upper reaches--all are ephemeral below the altitude of about 6,000 feet (1,830 meters). Surface-water development and use in the area are insignificant.

Utah

U.S. Geological Survey Science for the Wyoming Landscape Conservation Initiative-2010 Annual Report

This is the third report produced by the U.S. Geological Survey (USGS) for the Wyoming Landscape Conservation Initiative (WLCI) to detail annual work activities. The first report described activities for 2007 and 2008, and the second report covered work activities for FY09. This third report covers work activities conducted in FY2010, and it continues the 2009 approach of reporting on all the individual activities to help give WLCI partners and other readers the full scope of what has been accomplished. New in this year's report is an additional section for each work activity that outlines the work planned for the following fiscal year. In FY2010, there were 35 ongoing/expanded, completed, or new projects conducted under the five major multi-disciplinary science and technical-assistance activities: (1) Baseline Synthesis; (2) Targeted Monitoring and Research; (3) Data and Information Management; (4) Integration and Coordination; and (5) Decisionmaking and Evaluation. The three new work activities were to (1) compile existing water data for the entire WLCI region and (2) develop regional curves (statistical models) for relating bankfull-channel geometry and discharge to drainages in the WLCI region, both of which will help guide long-term monitoring of water resources; and (3) initiate a groundwater-monitoring network to evaluate potential effects of energy-development activities on groundwater quality where groundwater is an important source of public/private water supplies. Results of the FY2009 work to develop methods for assessing soil organic matter and mercury indicated that selenium and arsenic levels may be elevated in the Muddy Creek Basin; thus, the focus of that activity was shifted in FY2010 to evaluate biogeochemical cycling of elements in the basin. In FY2010, two ongoing activities were expanded with the addition of more sampling plots: (a) the study of how greater sage-grouse (Centrocercus urophasianus) use vegetation-treatment areas (sites added to the Moxa Arch Natural Gas Development area) and (2) the study of cheatgrass (Bromus tectorum) occurrence in burn treatments of the Little Mountain Ecosystem. The activity that entails evaluating relationships between ungulate herbivory and fire on aspen (Populus tremuloides) recruitment also was expanded to include relationships between stand characteristics of and herbivory on aspen in various ecohydrological settings. The USGS continued compiling data and developing geospatial products from all of its WLCI activities to support (1) ranking and prioritizing of proposed conservation projects, (2) developing the WLCI Integrated Assessment, and (3) developing the WLCI 5-year Conservation Action Plan. Two activities were completed in FY2010: (1) the conceptual modeling and indicator selection for monitoring resource conditions across the WLCI region, and (2) the literature review on effects of oil and gas development in western regions of the United States, both of which are in the last stages of publication.

Open-File Report

Thermal characteristics of Lake Michigan, 1954-55

The thermal regime of Lake Michigan is described on the basis of the analysis of 1,671 bathythermograph casts made in 1954 and 1955. The beginning, duration, geographic extent, and ending of thermal stratification were determined from 51 thermal profiles from all areas of the open lake. The lake gained heat for about 5 months (mid-March to mid-August) and lost heat over the rest of the year. It was thermally stratified during much of the warming cycle and vertically isothermal during much of the cooling cycle. The annual warming period began by April and was well underway by mid-May. During the transitional period between the isothermal conditions of winter and the thermal stratification of summer, the rate of warming was relatively fast. Seasonal warming began in the shallow inshore waters, which were usually thermally stratified by mid to late May. Stratification persisted in the deeper offshore water into December. Maximum surface temperatures and highest average metalimnion temperatures were reached in early August. Local variations in water temperatures during stratification, however, were a common feature of the thermal characteristics of Lake Michigan. These sometimes sudden changes were caused by upwellings of cold bottom waters that in some instances affected areas of hundreds of square miles. During the warming period of 1954, the heat content of Lake Michigan increased an average of 425 gm-cal/cm??/day. The annual heat budget of the lake for 1954 was 51,700 calories which is similar to that reported for 1942 (50,000 calories) and 1943 (62,000 calories). Heat was lost from mid-August until March, at a rate of about 250 gm-cal/cm??/day. Seasonal thermal characteristics differed little between 1954 and 1955, and were similar to those observed during studies in 1941 and 1942.

Technical Paper

Evaluation of a “trace” plant density score in LTRM vegetation monitoring

The Long Term Resource Monitoring (LTRM) element of the Upper Mississippi River Restoration program employs a harvest method for sampling submersed aquatic vegetation (SAV) whereby a rake is dragged ~1.5 m over the substrate and plant materials are retrieved. “Plant density” (PD) scores indicate SAV abundance and are based on the amount of plant material collected on the teeth of the rake. Standard PD scores are ordered, whole numbers from 0 (no SAV on the rake) to 5 (80-100% of rake teeth full) and are assigned at each subsite for all species combined and for each individual species. In LTRM monitoring between 1998 and 2018, ~73% of non-zero, all-species-combined PD scores were 1s, and ~89% of individual SAV species were 1s. The preponderance of PD = 1 scores along with the wide range of fresh mass represented by PD = 1 (quantified in Drake and Lund 2020) limits inference about SAV abundance from LTRM monitoring data. Field personnel noted that small plant fragments comprised a substantial fraction of PD = 1 observations and proposed a modification of the existing LTRM methods where PD = 1 was subdivided to include “trace” scores to represent such small fragments. Trace was defined as PD = 0.08, indicating a maximum of 1 of 13 gaps in the sampling rake filled to the level of an original PD = 1. Amounts of plant material greater than PD = 0.08 and up to the original score of 1 were defined PD = +1. This study used field data collected in 2018 (scoring and fresh weights of scored plant materials) from 136 vegetated sites in Pools 4, 8 and 13 to evaluate the proposed subdivision and to examine among-pool differences in PD data. In the study data, 33% of all-species-combined observations and 69% of species (grouped by morphology) that would previously have received a score of 1 were classified as PD = 0.08. PD scores of 0.08, +1, and 2-3 represented statistically distinct amounts of fresh mass in rake samples. There were systematic differences in the mass of SAV reflected by PD score based on plant morphology and species composition. The mean fresh mass of plant materials assigned a given PD score varied among the three pools, suggesting bias attributable to personnel. To reduce this bias in future data collection efforts, the field crews incorporated a calibration of plant density scores in annual field training. The results presented here describe how including a trace PD score in LTRM data collection improves the description of SAV abundance and consequently estimates of biomass from those PD scores. LTRM vegetation crews have recorded trace scores in annual sampling since 2019 as extra information (i.e. which does not change the LTRM data stream as 0.08 and +1 scores can still be combined for PD=1). Trace data are not currently available to outside users through the LTRM data browser but are available from vegetation component personnel upon request.

Long Term Resource Monitoring Technical Report

U.S. Geological Survey Science for the Wyoming Landscape Conservation Initiative-2009 Annual Report

This is the second report produced by the U.S. Geological Survey (USGS) for the Wyoming Landscape Conservation Initiative (WLCI) to detail annual work activities. The first report described work activities for 2007 and 2008; this report covers work activities conducted in 2009. Important differences between the two reports are that (1) this report does not lump all the Effectiveness Monitoring activities together as last year's report did, which will allow WLCI partners and other readers to fully appreciate the scope and accomplishments of those activities, and (2) this report does not include a comprehensive appendix of the background details for each work activity. In 2009, there were 29 ongoing or completed activities, and there were 5 new work activities conducted under the 5 original major multi-disciplinary science and technical assistance activities: (1) Baseline Synthesis; (2) Targeted Monitoring and Research; (3) Data and Information Management; (4) Integration and Coordination; and (5) Decisionmaking and Evaluation. New work included (1) developing a soil-quality index, (2) developing methods for assessing levels of and relationships between mercury and soil organic matter, and (3) ascertaining element source, mobility, and fate. Additionally, (4) remotely sensed imagery was used to assess vegetation as an indicator of soil condition and geology, and (5) an Integrated Assessment (IA) was initiated to synthesize what has been learned about WLCI systems to date, and to develop associated decision tools, maps, and a comprehensive report.

Open-File Report

Survival of Bristle-thighed Curlews equipped with externally mounted transmitters

Telemetry devices are widely used in avian research, but the degree to which the deployment of such devices affects the survival of study subjects is often not addressed. It is generally assumed that such effects are less pronounced in large-bodied species that conduct relatively short migrations and carry relatively light telemetry devices. We studied Bristle-thighed Curlews Numenius tahitiensis over the period 2012–2017 at a nonbreeding site on the island of Oahu, Hawaii. We used leg-loop harnesses to equip 11 curlews with externally mounted, solar-powered satellite transmitters that constituted ca. 3% of their body mass, and compared the annual survival of these birds to 37 curlews marked only with uniquely engraved leg flags. Despite the species’ large size and the small mass of the transmitters, we documented potential negative effects of externally mounted transmitters on the survival of Bristle-thighed Curlews. We also documented apparent effects of age and sex on the survival of curlews, underscoring the difficulty of disentangling the effects of research techniques on study subjects. Understanding and publicizing the potential effects of research itself on wildlife are crucial steps in the process of refining technical applications and improving the welfare of study animals. We urge researchers to critically assess and report the effects of similar research techniques to minimize deleterious effects in future studies.

Wader Study

Comparison of index velocity measurements made with a horizontal acoustic Doppler current profiler

The State of Illinois' annual withdrawal from Lake Michigan is limited by a U.S. Supreme Court decree, and the U.S. Geological Survey (USGS) is responsible for monitoring flows in the Chicago Sanitary and Ship Canal (CSSC) near Lemont, Illinois as a part of the Lake Michigan Diversion Accounting overseen by the U.S. Army Corps of Engineers, Chicago District. Every 5 years, a technical review committee consisting of practicing engineers and academics is convened to review the U.S. Geological Survey's streamgage practices in the CSSC near Lemont, Illinois. The sixth technical review committee raised a number of questions concerning the flows and streamgage practices in the CSSC near Lemont and this report provides answers to many of those questions. In addition, it is the purpose of this report to examine the index velocity meters in use at Lemont and determine whether the acoustic velocity meter (AVM), which is now the primary index velocity meter, can be replaced by the horizontal acoustic Doppler current profiler (H-ADCP), which is currently the backup meter. Application of the AVM and H-ADCP to index velocity measurements in the CSSC near Lemont, Illinois, has produced good ratings to date. The site is well suited to index velocity measurements in spite of the large range of velocities and highly unsteady flows at the site. Flow variability arises from a range of sources: operation of the waterway through control structures, lockage-generated disturbances, commercial and recreational traffic, industrial withdrawals and discharges, natural inflows, seiches, and storm events. The influences of these factors on the index velocity measurements at Lemont is examined in detail in this report. Results of detailed data comparisons and flow analyses show that use of bank-mounted instrumentation such as the AVM and H-ADCP appears to be the best option for index velocity measurement in the CSSC near Lemont. Comparison of the rating curves for the AVM and H-ADCP demonstrates that the H-ADCP is a suitable replacement for the AVM as the primary index velocity meter in the CSSC near Lemont. A key component to Lake Michigan Diversion Accounting is the USGS gaging station on the CSSC near Lemont, Illinois. The importance of this gaging station in monitoring withdrawals from Lake Michigan has made it one of the most highly scrutinized gaging stations in the country. Any changes in streamgaging practices at this gaging station requires detailed analysis to ensure the change will not adversely affect the ability of the USGS to accurately monitor flows. This report provides a detailed analysis of the flow structure and index velocity measurements in the CSSC near Lemont, Illinois, to ensure that decisions regarding the future of this streamgage are made with the best possible understanding of the site and the characteristics of the flow.

Illinois