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USGS2020

Effects of tidally varying river flow on entrainment of juvenile salmon into Sutter and Steamboat Sloughs

Survival of juvenile salmonids in the Sacramento–San Joaquin Delta (Delta) varies by migration route, and thus the proportion of fish that use each route affects overall survival through the Delta. Understanding factors that drive routing at channel junctions along the Sacramento River is therefore critical to devising management strategies that maximize survival. Here, we examine entrainment of acoustically tagged juvenile Chinook Salmon into Sutter and Steamboat sloughs from the Sacramento River. Because these sloughs divert fish away from the downstream entrances of the Delta Cross Channel and Georgiana Slough (where fish access the low-survival region of the interior Delta), management actions to increase fish entrainment into Sutter and Steamboat sloughs are being investigated to increase through-Delta survival. Previous studies suggest that fish generally “go with the flow”—as net flow into a divergence increases, the proportion of fish that enter that divergence correspondingly increases. However, complex tidal hydrodynamics at sub-daily time-scales may be decoupled from net flow. Therefore, we modeled routing of acoustic tagged juvenile salmon as a function of tidally varying hydrodynamic data, which was collected using temporary gaging stations deployed between March and May of 2014. Our results indicate that discharge, the proportion of flow that entered the slough, and the rate of change of flow were good predictors of an individual’s probability of being entrained. In addition, interactions between discharge and the proportion of flow revealed a non-linear relationship between flow and entrainment probability. We found that the highest proportions of fish are likely to be entrained into Steamboat Slough and Sutter Slough on the ascending and descending limbs of the tidal cycle, when flow changes from positive to negative. Our findings characterize how patterns of entrainment vary with tidal flow fluctuations, providing information critical for understanding the potential effect of management actions (e.g., fish guidance structures) to modify routing probabilities at this location. Main Content View Larger 1 Sponsored by the Delta Science Program and the UC Davis Muir Institute ABSTRACT Survival of juvenile salmonids in the Sacramento–San Joaquin Delta (Delta) varies by migration route, and thus the proportion of fish that use each route affects overall survival through the Delta. Understanding factors that drive routing at channel junctions along the Sacramento River is therefore critical to devising management strategies that maximize survival. Here, we examine entrainment of acoustically tagged juvenile Chinook Salmon into Sutter and Steamboat sloughs from the Sacramento River. Because these sloughs divert fish away from the downstream entrances of the Delta Cross Channel and Georgiana Slough (where fish access SFEWS Volume 19 | Issue 2 | Article 4 https://doi.org/10.15447/sfews.2021v19iss2art4 * Corresponding author: rperry@usgs.gov 1 Western Fisheries Research Center US Geological Survey Cook, WA 98605 USA 2 California Water Science Center US Geological Survey Sacramento, CA 95819 USA 3 Current address: Mid-Columbia Fish and Wildlife Conservation Office Yakima Basin Program US Fish and Wildlife Service Yakima, WA 98903 USA the low-survival region of the interior Delta), management actions to increase fish entrainment into Sutter and Steamboat sloughs are being investigated to increase through-Delta survival. Previous studies suggest that fish generally “go with the flow”—as net flow into a divergence increases, the proportion of fish that enter that divergence correspondingly increases. However, complex tidal hydrodynamics at sub-daily time-scales may be decoupled from net flow. Therefore, we modeled routing of acoustic tagged juvenile salmon as a function of tidally varying hydrodynamic data, which was collected using temporary gaging stations deployed between March and May of 2014. Our results indicate that discharge, the proportion of flow that entered the slough, and the rate of change of flow were good predictors of an individual’s probability of being entrained. In addition, interactions between discharge and the proportion of flow revealed a non-linear relationship between flow and entrainment probability. We found that the highest proportions of fish are likely to be entrained into Steamboat Slough and Sutter Slough on the ascending and descending limbs of the tidal cycle, when flow changes from positive to negative. Our findings characterize how patterns of entrainment vary with tidal flow fluctuations, providing information critical for understanding the potential effect of management RESEARCH Effects of Tidally Varying River Flow on Entrainment of Juvenile Salmon into Sutter and Steamboat Sloughs Jason G. Romine 1,3 , Russell W. Perry* 1 , Paul R. Stumpner 2 , Aaron R. Blake 2 , Jon R. Burau 2 2 VOLUME 19, ISSUE 2, ARTICLE 4 actions (e.g., fish guidance structures) to modify routing probabilities at this location. KEY WORDS Telemetry, juvenile salmon, migration routing, survival INTRODUCTION The Sacramento–San Joaquin River Delta (hereafter referred to as “the Delta”) is a complex series of channels and embayments in west central California of the United States. The Delta has undergone drastic transformation through construction of dikes, levees, reclaimed land, dredged canals and cuts, and water export projects (Nichols et al. 1986). The loss of habitat coupled with introduction of non-native piscivorous fishes has led to the decline of several salmonid stocks that utilize the Delta (Lindley 2009; National Marine Fisheries Service 2014). The physical complexity of the Delta poses significant challenges for understanding how juvenile salmon negotiate the complex channel network and survive in different migration routes. Yet such information is critical for understanding how water-management actions, such as operation of water diversions, influence survival of juvenile salmon. Through-Delta survival of juvenile Chinook Salmon that emigrate from the Sacramento River ranges from 10% to 80%, depending on river flow and migration route (Perry et al. 2018). The Delta can be broken down into four primary routes: (1) Sacramento River, (2) Steamboat and Sutter sloughs, (3) Georgiana Slough, and (4) Delta Cross Channel (DCC). Fish that remain in the Sacramento River consistently have the highest survival (Perry et al. 2010, 2013, 2018). However, fish that enter the interior Delta—the region to the south of the Sacramento River (Figure 1)—have the lowest survival among all routes and survive at less than half the rate of fish in the Sacramento River, likely as a result of longer migration times and exposure to non-native predators (Newman and Brandes 2010; Perry et al. 2018). On average, fish that migrate through Steamboat and Sutter sloughs exhibit survival similar to fish that remain in the Sacramento River at high flows but have lower survival at low flows (Perry et al. 2018). Because of differences in survival among migration routes, the proportion of fish that use each route affects the total survival of the population. Therefore, understanding the drivers behind fish routing in the Delta is imperative to inform management actions that help in the recovery of imperiled salmonid populations in the Central Valley. For example, Perry et al. (2013) found that total survival through the Delta could be increased by up to 7 percentage points by eliminating entrainment into Georgiana Slough and the DCC. These findings led to investigation of management actions to reduce entrainment into the DCC (Plumb et al. 2016) and Georgiana Slough (Perry et al. 2014). Both physical and non-physical barriers have been tested at the entrance to Georgiana Slough divergence (Perry et al. 2014; Romine et al. 2016). A non-physical barrier was able to reduce entrainment to the interior Delta through Georgiana Slough (Perry et al. 2014), but a floating fish-guidance structure reduced entrainment to a lesser extent (Romine et al. 2016). Research and engineering solutions to minimize entrainment have focused on the Georgiana Slough divergence, the DCC divergence, and the Old River divergence in the San Joaquin River (Buchanan et al. 2013; SJRG 2013). However, there has been little focus on understanding fish routing dynamics at other primary river junctions in the Delta, such as Sutter and Steamboat sloughs. Sutter and Steamboat sloughs diverge from the Sacramento about 10 km upstream from the DCC and Georgiana slough, and represent the first major junction that juvenile salmon encounter as they enter the Delta from the Sacramento River ( Figure 1 ). Because Sutter and Steamboat sloughs are upstream of the entrance to the interior Delta via the DCC and Georgiana Slough (Figure 1), juvenile salmon that enter Sutter and Steamboat sloughs avoid entrainment into the interior Delta where survival is low. Thus, management actions to increase entrainment could increase overall.

Sacramento–San Joaquin Delta↗

USGS1967

A closed recirculated sea-water system

Study of a virus disease in the chinook salmon (Oncorhynchus tshawytscha ) necessitated the use of a marine environment to study the long range effects of the disease and to complete the life cycle of its etiologic agent. A closed recirculated sea-water system was designed for use under experimental laboratory conditions so that controlled studies of the disease could be made. As others may wish to do marine environment studies in the laboratory, the design and operation of our system are presented. Other systems currently in use have been described by Chin (1959), DeWitt and Salo (1960), McCrimmon and Berst (1966), and the authors of collected papers edited by Clark and Clark (1964). Preparatory to the design and construction of the system in use in this laboratory, visits were made to marine systems in use at the University of Washington's College of Fisheries, Seattle, -washington, and Friday Harbor Laboratory, San Juan Island, Washington; the Washington State Department of Fisheries' Point whitney Shellfish Laboratory, Brinnon, Washington; Humboldt State College, Arcata, California; and the Steinhart Aquarium of the California Academy of Science, San Francisco, California.

Progressive Fish-Culturist↗

USGS1998

Isolation of Acholeplasma laidlawii from centrarchids in a Central Florida Lake

In 1991, the poor physical condition of largemouth bass Micropterus salmoides from Lake Harris, Florida, was associated with the decline of the lake's fishery. The swim bladders of emaciated bass had mild inflammation and ecchymotic hemorrhages. A mycoplasma-like organism isolated from swim bladders was initially believed to be the causative agent. The organism was later identified as Acholeplasma laidlawii by using a fluorescent antibody procedure and was demonstrated to be nonpathogenic. Parenteral injection of the organism into healthy largemouth bass fingerlings produced no signs of disease or difference in growth rate compared with control fish during a 16-month period. Field studies resulted in isolation of A. laidlawii from black crappies Pomoxis nigromaculatus , bluegills Lepomis macrochirus , and redear sunfish L. microlophus , but not from noncentrarchids in Lake Harris or from any fish species in a control fishery (Lake Holly, Florida). The absence of organisms in all emaciated bass, our inability to reproduce the disease, and isolation of the organism from seemingly healthy fish suggest this organism was not pathogenic.

Journal of Aquatic Animal Health↗

USGS2007

The relationship between circulating ecdysteroids and chela allometry in male tanner crabs: Evidence for a terminal molt in the genus Chionoecetes

Whether male Tanner crabs, Chionoecetes bairdi, undergo a terminal molt associated with a change in claw allometry has long been debated. We measured molting hormone levels in captured male C. bairdi to assess the potential for molting. We plotted a frequency histogram of chela height to carapace width ratios and found a bimodal distribution of crabs with a ratio of approximately 0.18 separating the two modes. Male crabs with a ratio less than 0.18 were classified as "small-clawed" (SC) while crabs with a ratio greater than 0.18 were classified as "large-clawed" (LC). Circulating molting hormones between SC and LC crabs were compared. Significantly lower ecdysteroid levels were found in LC crabs, indicating that this morphotype had negligible potential for molting. Circulating ecdysteroids were measured in SC males of different shell conditions (soft, new, old, and very old) and no significant differences were found. This research suggests that the molt to LC morphology is a terminal molt. The results from this study have important implications for fisheries management because sub-legal LC males will not recruit into the fishery and removal of larger males may have long term effects on population size structure.

Journal of Crustacean Biology↗

USGS2003

Applying ecological criteria to marine reserve design: A case study from the California Channel Islands

Using ecological criteria as a theoretical framework, we describe the steps involved in designing a network of marine reserves for conservation and fisheries management. Although we describe the case study of the Channel Islands, the approach to marine reserve design may be effective in other regions where traditional management alone does not sustain marine resources. A group of agencies, organizations, and individuals established clear goals for marine reserves in the Channel Islands, including conservation of ecosystem biodiversity, sustainable fisheries, economic viability, natural and cultural heritage, and education. Given the constraints of risk management, experimental design, monitoring, and enforcement, scientists recommended at least one, but no more than four, reserves in each biogeographic region. In general, the percentage of an area to be included in a reserve network depends on the goals. In the Channel Islands, after consideration of both conservation goals and the risk from human threats and natural catastrophes, scientists recommended reserving an area of 30–50% of all representative habitats in each biogeographic region. For most species of concern, except pinnipeds and seabirds, information about distributions, dispersal, and population growth was limited. As an alternative to species distribution information, suitable habitats for species of concern were used to locate potential reserve sites. We used a simulated annealing algorithm to identify potential reserve network scenarios that would represent all habitats within the smallest area possible. The analysis produced an array of potential reserve network scenarios that all met the established goals.

California↗

USGS2003

Ecological criteria for evaluating candidate sites for marine reserves

Several schemes have been developed to help select the locations of marine reserves. All of them combine social, economic, and biological criteria, and few offer any guidance as to how to prioritize among the criteria identified. This can imply that the relative weights given to different criteria are unimportant. Where two sites are of equal value ecologically, then socioeconomic criteria should dominate the choice of which should be protected. However, in many cases, socioeconomic criteria are given equal or greater weight than ecological considerations in the choice of sites. This can lead to selection of reserves with little biological value that fail to meet many of the desired objectives. To avoid such a possibility, we develop a series of criteria that allow preliminary evaluation of candidate sites according to their relative biological values in advance of the application of socioeconomic criteria. We include criteria that, while not strictly biological, have a strong influence on the species present or ecological processes. Our scheme enables sites to be assessed according to their biodiversity, the processes which underpin that diversity, and the processes that support fisheries and provide a spectrum of other services important to people. Criteria that capture biodiversity values include biogeographic representation, habitat representation and heterogeneity, and presence of species or populations of special interest (e.g., threatened species). Criteria that capture sustainability of biodiversity and fishery values include the size of reserves necessary to protect viable habitats, presence of exploitable species, vulnerable life stages, connectivity among reserves, links among ecosystems, and provision of ecosystem services to people. Criteria measuring human and natural threats enable candidate sites to be eliminated from consideration if risks are too great, but also help prioritize among sites where threats can be mitigated by protection. While our criteria can be applied to the design of reserve networks, they also enable choice of single reserves to be made in the context of the attributes of existing protected areas. The overall goal of our scheme is to promote the development of reserve networks that will maintain biodiversity and ecosystem functioning at large scales. The values of ecosystem goods and services for people ultimately depend on meeting this objective.

Ecological Applications↗

USGS2015

Western water and climate change

The western United States is a region long defined by water challenges. Climate change adds to those historical challenges, but does not, for the most part, introduce entirely new challenges; rather climate change is likely to stress water supplies and resources already in many cases stretched to, or beyond, natural limits. Projections are for continued and, likely, increased warming trends across the region, with a near certainty of continuing changes in seasonality of snowmelt and streamflows, and a strong potential for attendant increases in evaporative demands. Projections of future precipitation are less conclusive, although likely the northernmost West will see precipitation increases while the southernmost West sees declines. However, most of the region lies in a broad area where some climate models project precipitation increases while others project declines, so that only increases in precipitation uncertainties can be projected with any confidence. Changes in annual and seasonal hydrographs are likely to challenge water managers, users, and attempts to protect or restore environmental flows, even where annual volumes change little. Other impacts from climate change (e.g., floods and water-quality changes) are poorly understood and will likely be location dependent. In this context, four iconic river basins offer glimpses into specific challenges that climate change may bring to the West. The Colorado River is a system in which overuse and growing demands are projected to be even more challenging than climate-change-induced flow reductions. The Rio Grande offers the best example of how climate-change-induced flow declines might sink a major system into permanent drought. The Klamath is currently projected to face the more benign precipitation future, but fisheries and irrigation management may face dire straits due to warming air temperatures, rising irrigation demands, and warming waters in a basin already hobbled by tensions between endangered fisheries and agricultural demands. Finally, California's Bay-Delta system is a remarkably localized and severe weakness at the heart of the region's trillion-dollar economy. It is threatened by the full range of potential climate-change impacts expected across the West, along with major vulnerabilities to increased flooding and rising sea levels.

Ecological Applications↗

USGS2025

anadrofish: Anadromous fish population responses to dams

Diadromous fishes world-wide experienced precipitous declines during the 19th and 20th centuries due to a combination of overfishing, pollution, and freshwater habitat loss through construction of dams (Limburg & Waldman, 2009). Following wide-spread fishing closures and large-scale remediation of many historical pollution sources, dams in coastal rivers remain as the largest tractable impediment to population recovery for many of these species (Waldman & Quinn, 2022). In some cases, dams reduce access to as much as 95% of freshwater and rearing habitat (Hall et al., 2011). These effects are especially pronounced for species that rely on long-distance migrations to spawning and rearing habitat upstream of barriers such as various alosines (herrings; e.g., American shad Alosa sapidissima , alewife A. pseudoharengus , and blueback herring A. aestivalis (Noonan et al., 2012)) and salmonines (trout and salmon; e.g., Salmo spp. (Parrish et al., 1998) and Oncorhynchus spp. (Quiñones et al., 2015). Traditional stock assessment tools such as per-recruit analyses often fail to capture management complexities related to diadromous life histories such as fish passage at dams, and integrated assessment models can be difficult to parameterize for data-poor species such as herrings (Atlantic States Marine Fisheries Commission, 2024). This has resulted in the development of species- and system-specific approaches to fisheries stock assessment and management strategy evaluation (Barber et al., 2018; Nieland et al., 2015; Roy et al., 2018; Stich et al., 2019). We created the anadrofish package (Stich, Hardesty, et al., 2025) for R (R Core Team, 2025) to provide a generalized approach that also allows broader application to novel species, systems, and scenarios.

Journal of Open Source Software↗

USGS2017

Litterfall production of mangroves in the Huizache-Caimanero lagoon system, México

The ecological legacy of the Huizache-Caimanero lagoon system has long been known as a trophically rich and productive ecosystem that supported artisanal fisheries of local and regional importance; however, a decline in fisheries' yields has been observed in recent decades. Mangroves are a fundamental component of this ecosystem, though data records and field studies are lacking in describing their structure and seasonal characteristics. Mangrove litterfall production was monitored during 2012–13 and described for the dominant species, Avicennia germinans (L.) Stearn and Laguncularia racemosa (L.) C.F. Gaertn. Forest surveys and monthly litter collections were obtained along a latitudinal gradient within the larger lagoon system to characterize the forest structure, leaf biomass, and related biological indicators (chlorophyll a concentration and Normalized Difference Vegetation Index [NDVI] estimated on leaf tissues). Results showed that structural characteristics (diameter at breast height, basal area, height, and crown diameter) were greater in Huizache, corresponding to patches with a dominance of A. germinans , while higher stem density was recorded for L. racemosa in Caimanero, comparatively similar to other mangrove habitat in NW Mexico. Litterfall was highest from May to October for both species. Litterfall production was also higher overall in 2012 in comparison to 2013, possibly corresponding with meteorological differences, most notably wind conditions. Annual litterfall production was similar by species across northern and southern Sinaloa. A contrast of the NDVI by site and species showed a wide interval, including low values for A. germinans , suggesting stress conditions for this species.

Huizache-Caimanero lagoon system↗

USGS2022

Pink-footed Shearwater Ardenna creatopus

The Pink-footed Shearwater’s life history is tied to the Humboldt and California upwelling currents in the Eastern Pacific Ocean. It is larger than other shearwaters in its range, other than Flesh-footed Shearwater Ardenna carneipes. It is also distinct in appearance with pinkish bill and feet, pale underparts, and brown to grayish upperparts. It is known to breed on the Juan Fernández Islands and Isla Mocha, off central Chile. Birds spend the non-breeding period in waters off Peru and northward to waters off the west coast of North America. Breeding occurs in colonies, where pairs nest in burrows and the female lays a single egg. Breeding colonies generally are located on steep slopes in both open and forested habitats. During the breeding period, the species forages mainly in waters over the relatively narrow continental shelf as well as over deep offshore waters, depending on breeding colony. During the non-breeding period, individuals concentrate near the continental shelf-break and slope, and in more pelagic waters while making migratory movements. The Pink-footed Shearwater preys on fish and squid by seizing them at the surface or by making shallow dives. Foraging is often in association with albacore, dolphins, other seabirds, and fishing vessels. Pink-footed Shearwater is listed as Vulnerable by the IUCN and Endangered by Chile and Canada. Principal conservation threats are mortality from fisheries bycatch (especially in South American fisheries), and predation and habitat degradation from introduced mammals on breeding islands.

Birds of the World↗

USGS1954

Relationship of length of fish to incidence of sea lamprey scars on white suckers, Catostomus commersoni, in Lake Huron

During the course of experimental fishing operations conducted by the staff of Hammond Bay Fishery Laboratory (a field station of Great Lakes Fishery Investigations) in 1950-1951, length measurements and records of scarring incidence and number of scars per individual were obtained for a sample of 552 white suckers, Catostomus commersoni (Lacepede). The results of this study indicate that if information on the incidence of sea lamprey scars on white suckers is to be used to judge the relative abundance of sea lampreys and the damages inflicted by that parasite on the sucker stock, data must include records of the lengths of fish. It is to be suspected strongly that a similar conclusion applies in other localities and to other species preyed upon by the sea lamprey.

Copeia↗

USGS2015

Distribution, abundance, and habitat associations of a large bivalve (Panopea generosa) in a eutrophic, fjord estuary

Marine bivalves are important ecosystem constituents and frequently support valuable fisheries. In many nearshore areas, human disturbance—including declining habitat and water quality—can affect the distribution and abundance of bivalve populations, and complicate ecosystem and fishery management assessments. Infaunal bivalves, in particular, are frequently cryptic and difficult to detect; thus, assessing potential impacts on their populations requires suitable, scalable methods for estimating abundance and distribution. In this study, population size of a common benthic bivalve (the geoduck Panopea generosa ) is estimated with a Bayesian habitat-based model fit to scuba and tethered camera data in Hood Canal, a fjord basin in Washington state. Densities declined more than two orders of magnitude along a north—south gradient, concomitant with patterns of deepwater dissolved oxygen, and intensity and duration of seasonal hypoxia. Across the basin, geoducks were most abundant in loose, unconsolidated, sand substrate. The current study demonstrates the utility of using scuba, tethered video, and habitat models to estimate the abundance and distribution of a large infaunal bivalve at a regional (385-km 2 ) scale.

Washington↗

USGS2009

2008 Spawning Cisco Investigations in the Canadian Waters of Lake Superior

The Great Lakes Science Center of the United States Geological Survey (USGS) is working cooperatively with the Ontario Ministry of Natural Resources (OMNR) on a threeyear study to develop standard procedures for acoustic and midwater trawl (AC-MT) assessments of spawning cisco Coregonus artedi that the OMNR can carry forward as a management activity. In year two (2008), we conducted an AC-MT survey of the northern shore from Nipigon Bay to Thunder Bay. Spawning-cisco (> 250 mm total length) densities were lowest near Nipigon Bay (<10/ha), moderate in and around Black Bay (15- 30/ha), and highest in Thunder Bay (118/ha). Rainbow smelt Osmerus mordax densities were highest in Nipigon (2,179/ha) and Black (3,219/ha) bays, and lowest in Thunder Bay (961/ha). We combined our AC-MT survey results with commercial catch records to estimate exploitation fractions of female cisco in Thunder Bay during the 2008 fishery at 4% for ages 1-5, 8.7% for ages 6-12, and 4.4% for ages ≥ 13. Lake Superior fishery managers recently recommended that annual exploitation of adult female lake cisco be kept below 10-15%. Recruitment of cisco since 2003 has been low and there is a strong probability the Thunder Bay stock will decline into the future. Using a simple population dynamics approach we estimated that if the current total allowable catch (TAC) quota is held constant, exploitation fractions could exceed 10% by 2010 and 15% by 2011. Our 2008 collections suggested the survey of Black Bay was likely conducted before all spawners had returned there to spawn. Our data also suggested that cisco collected in Black Bay and east of this site in mid-November may be from the same stock. During November 2009 we will attempt to get better definition of the area occupied by cisco around Black Bay and also determine when surveys should be conducted at this location.

Report↗

USGS2008

Lower Methow tributaries intensive effectiveness monitoring study. Interim report

Actions have been taken to replace diversion dams in lower Beaver Creek with a series of rock vortex weirs. Some of these diversion dams have been in place for over 100 years, and they have impaired or completely blocked upstream migration of fish. Three diversion dams were replaced in 2003 (Lower Stokes, Thurlow Transfer, and Upper Stokes), and a forth diversion dam was replaced in 2004 (Fort-Thurlow). These vortex weirs were designed and installed under the supervision of U.S. Bureau of Reclamation (BOR) engineers and completed in accordance to National Marine Fisheries Service (NMFS) and Washington Department of Fisheries and Wildlife (WDFW) fish passage criteria. The projects were designed to meet fish species recovery needs described by the Endangered Species Act (ESA) and the “BiOp” issued by NMFS (2000a). Since no specific guidelines have been identified to date specifically addressing diversion dams, WDFW and NMFS guidelines are being considered as the target design and performance criteria for the sites monitored as part of this project. Where used, the vortex weirs were designed to maintain irrigation diversion capabilities while improving fish passage.

Washington↗

USGS2017

Cooperative Fish and Wildlife Research Units Program—2016 year in review

Summary The Cooperative Fish and Wildlife Research Units (CRU) Program had a productive year in 2016. Despite vacancies in our scientist ranks exceeding 20 percent, our research, training, and teaching portfolio was full and we graduated 93 students and published 398 manuscripts primarily focused on addressing the real conservation challenges of our cooperators. As I’ve stated before, our mission is our legacy: meeting the actionable science needs of our cooperators, providing them technical guidance and assistance in interpreting and applying new advances in science, and developing the future workforce through graduate education and mentoring. Our scientists and the manner in which they approach our mission continue to inspire me. The most rewarding part of my job is meeting and engaging with the students they recruit—the conservation professionals of the future. I cannot help but feel uplifted after discussions with and presentations by these young men and women. Personally, I owe my place in the profession today to the mentoring I received as a CRU student, and today’s CRU scientists have raised the bar. It gives me hope for the future of conservation, and added motivation to see our vacancies filled so that we can expand our portfolio. The National Cooperators’ Coalition has been active and is strategically working to build support on our behalf. Sincere thanks to the American Fisheries Society, the Association of Fish and Wildlife Agencies, the Boone and Crockett Club, the National Association of University Fish and Wildlife Programs, the Wildlife Management Institute, and The Wildlife Society for their efforts and those of their affiliated members. We co-sponsored a workshop at the 2016 North American Wildlife and Natural Resources Conference along with the American Fisheries Society, the Association of Fish and Wildlife Agencies, the Wildlife Management Institute, and The Wildlife Society, titled “Barriers and Bridges in Reconnecting Natural Resources Science and Management.” The workshop was well received and we have been asked to continue the dialogue with a second workshop in 2017. It was evident during the workshop that the CRU is viewed by our cooperators as an important and essential linkage between academia and practitioners. This is testament to the legacy of the CRU Program and the foundation it is built upon. In this Year in Review report, you will find details on staffing, vacancies, research funding, and other pertinent information. You will also see snapshots of CRU projects with information on how results have been or are being applied by cooperators. That is the essence of what we do: science that matters.

Circular↗

USGS1998

Low-flow water-quality characterization of the Gore Creek watershed, upper Colorado River basin, Colorado, August 1996

The Upper Colorado River Basin (UCOL) is one of 59 National Water-Quality Assessment (NAWQA) study units designed to assess the status and trends of the Nation?s water quality (Leahy and others, 1990). The UCOL study unit began operation in 1994, and surface-water-quality data collection at a network of 14 sites began in October 1995 (Apodaca and others, 1996; Spahr and others, 1996). Gore Creek, which flows through Vail, Colorado, originates in pristine alpine headwaters and is designated a gold-medal trout fishery. The creek drains an area of about 102 square miles and is a tributary to the Eagle River. Gore Creek at the mouth near Minturn (site 13 in fig. 1) is one of the 14 sites in the UCOL network. This site was selected to evaluate water quality resulting from urban development and recreational land use. The Gore Creek watershed has undergone rapid land-use changes since the 1960?s as the Vail area shifted from traditional mountain ranchlands to a four-season resort community. Residential, recreational, commercial, and transportation development continues near Gore Creek and its tributaries to support the increasing permanent and tourist population of the area. Interstate 70 runs through the watershed from Vail Pass near site 14, along the eastern side of Black Gore Creek, and along the northern side of the main stem of Gore Creek to the mouth of the watershed (fig. 1). A major local concern is how increasing urbanization/recreation affects the water quality, gold-medal trout fishery, and aesthetic values of Gore Creek. An evaluation of the spatial characteristics of water quality in the watershed upstream from site 13 at the mouth of Gore Creek (fig. 1) can provide local water and land managers with information necessary to establish water policy and make land-use planning decisions to maintain or improve water quality. Historical data collected at the mouth of Gore Creek provide information about water quality resulting from land use, but a synoptic sampling is needed to determine the distribution and sources of water-quality constituents at one point in time. In August 1996, a low-flow synoptic sampling for analyses of water-quality properties and constituents at sites in the Gore Creek watershed was done by the U.S. Geological Survey, in cooperation with the Town of Vail, Eagle River Water and Sanitation District, Upper Eagle River Water Authority, and Northwest Colorado Council of Governments, to evaluate the water quality of Gore Creek. The August low-flow period can be important from water-quality and stream ecology perspectives. There is less water available to dilute any contaminants entering the streams, and stream temperatures are highest during August. Physical habitat for aquatic plants and animals is smaller than during most other times of the year. To address these more extreme water-quality and ecological conditions, the synoptic sampling was conducted during the summer low-flow period. Specific objectives of this sampling included: 1. Establish a current data set representing the spatial characteristics of low-flow water-quality conditions in the Gore Creek watershed, and 2. Develop some understanding of land-use and water-quality relations in the watershed. This fact sheet presents hydrologic background information and an analysis of general water-quality properties and constituents, trace elements, and nutrients collected in water samples during low-flow synoptic sampling of the Gore Creek watershed. The U.S. Geological Survey also is conducting a study of the algae and macroinvertebrate communities and physical habitat of streams in the Gore Creek watershed during low flow. This study is designed to provide information about land-use and stream ecology relations in the watershed.

Colorado↗

USGS2005

The Columbia River Research Laboratory

The U.S. Geological Survey's Columbia River Research Laboratory (CRRL) was established in 1978 at Cook, Washington, in the Columbia River Gorge east of Portland, Oregon. The CRRL, as part of the Western Fisheries Research Center, conducts research on fishery issues in the Columbia River Basin. Our mission is to: 'Serve the public by providing scientific information to support the stewardship of our Nation's fish and aquatic resources...by conducting objective, relevant research'.

Washington↗

USGS2006

Investigations of the Effects of Synthetic Chemicals on the Endocrine System of Common Carp in Lake Mead, Nevada and Arizona

Introduction: Lake Mead is the largest reservoir by volume in the United States and was created by the construction of the 221-meter high Hoover Dam in 1935 at Black Canyon on the lower Colorado River between Nevada and Arizona (fig. 1). Inflows of water into the lake include three rivers, Colorado, Virgin, and Muddy; as well as Las Vegas Wash, which is now perennial because of discharges from municipal wastewater treatment plants (Covay and Leiker, 1998) and urban stormwater runoff. As the population within the Las Vegas Valley began to increase in the 1940s, the treated effluent volume also has increased and in 1993 it constituted about 96 percent of the annual discharge of Las Vegas Wash (Bevans and others, 1996). The mean flow of Las Vegas Wash into Las Vegas Bay from 1992 to 1998 was about 490,000 m3/d (Preissler and others, 1999) and in 2001 increased to 606,000 m3/d (U.S. Bureau of Reclamation, 2001). The nutrient concentration in most areas of the lake is low, but wastewater discharged into Las Vegas Bay has caused an increased level of nutrients and primary productivity (aquatic plant and algal production) in this area of the lake (LaBounty and Horn, 1997). A byproduct of this increase in productivity has been the establishment of an important recreational fishery in Las Vegas Bay. However, concentrations of chlorophyll a (a measure of algal biomass) have also increased (LaBounty and Horn, 1997). In the spring of 2001, parts of Lake Mead experienced massive algal blooms. In addition to nutrient loading by wastewater, the presence of numerous synthetic chemicals in water, bottom sediments, and in fish tissue also has been reported (Bevans and others, 1996). Synthetic chemicals discharging into Las Vegas Bay and Lake Mead (fig. 1) originate from several sources that include surplus residential-irrigation water runoff, stormwater runoff, subsurface inflow, and tertiary treated sewage effluent discharging from three sewage-treatment plants. Chemicals detected in Las Vegas Wash and Bay environments include polycyclic aromatic hydrocarbons (PAHs), polychlorinated biphenyls (PCBs), organochlorine pesticides (including DDT and DDE), and 'emerging contaminants' such as fragrances/musks, flame retardants, triclosan and its breakdown products, personal care products, and pharmaceuticals (Bevans and others, 1996; Boyd and Furlong, 2002; Leiker and others, in press). Many of these compounds are able to interact with the endocrine system of animals and potentially cause reproductive impacts. The National Park Service (NPS) manages Lake Mead National Recreation Area (LMNRA) with about 8 million yearly visitors including 500,000 anglers drawn to its world-class recreational fishery. The U.S. Fish and Wildlife Service (FWS) provides management for the federally designated, endangered razorback sucker (Xyrauchen texanus) and for more than 180 species of migratory birds that utilize LMNRA surface waters. These multiple uses of surface water in the area demonstrate their vital importance to the LMNRA as well as the need to maintain the quality of water at levels that are adequate for these uses.

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