USGS Science⌕ Search

SEARCH · USGS Science

Results for “Fish and Fisheries”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 865 records · Page 48Linked to original sources

Mitochondrial DNA variability among Lake Baikal omul Coregonus autumnalis migratorius (Georgi)

Omul, Coregonus autumnalis, are a commercially important coregonine fish from Lake Baikal, Siberia, Russia. In Lake Baikal, three morphotypes recognized by fishery experts occupy different zones in the lake: they are referred to as "littoral," "pelagic," and "benthic". Expressed character divergence was supported by whole-body morphometric analysis, but it is not known whether discrete genetic differences accompany the observed morphological variation. This study was designed to assess the genetic variation of three different omul morphotypes sampled from different locations in Lake Baikal that were segregated by morphotype in multivariate analysis. We surveyed genetic variation with restriction fragment length polymorphism analysis of specific gene loci amplified with the polymerase chain reaction. Sequence variation was localized in the mitochondrial control region. Though no discrete genetic markers were found, there is evidence of reproductive segregation by geographic location that corroborates geographic variation in morphological characters.

Advances in Limnology↗

Dramatic increase in the relative abundance of large male dungeness crabs Cancer magister following closure of commercial fishing in Glacier Bay, Alaska

The size structure of the population of the Dungeness crab Cancer magister was studied at six sites in or near Glacier Bay, Alaska, before and after the closure of commercial fishing. Seven years of preclosure and 4 years of postclosure data are presented. After the closure of Glacier Bay to commercial fishing, the number and size of legal-sized male Dungeness crabs increased dramatically at the experimental sites. Female and sublegal-sized male crabs, the portions of the population not directly targeted by commercial fishing, did not increase in size or abundance following the closure. There was not a large shift in the size-abundance distribution of male crabs at the control site that is still open to commercial fishing. Marine protected areas are being widely promoted as effective tools for managing fisheries while simultaneously meeting marine conservation goals and maintaining marine biodiversity. Our data demonstrate that the size of male Dungeness crabs can markedly increase in a marine reserve, which supports the concept that marine reserves could help maintain genetic diversity in Dungeness crabs and other crab species subjected to size-limit fisheries and possibly increase the fertility of females. ?? 2004 by the American Fisheries Society.

American Fisheries Society Symposium↗

Evaluating behavioral responses of spawning-phase Walleyes to odors of rivers and other Walleyes

Many fish species show a remarkable ability to home to streams for spawning and fishery managers have applied that knowledge to restore or rehabilitate populations of some species. Walleye Sander vitreus show strong homing tendencies and the ability to select their natal river from other streams. The role of olfactory cues has been hypothesized but never tested in Walleye and many aspects of Walleye migratory behavior associated with spawning are poorly understood. The objectives of our study were: 1) to determine if spawning-phase Walleye from the Ford River in Michigan favored the odor of water from their home stream over that of a nearby river, and 2) to examine effects of male and female Walleye (conspecific) odors on water choice preferences of spawning-phase male Walleyes to learn whether such odors may attract adult Walleyes into rivers. Flow-through flume assays with two side-by-side channels were used to evaluate behavioral preferences of spawning-phase Walleye to river and conspecific odors. Odors of Ford River in 2021 trials and conspecific males in 2019 trials (when analyzed by individuals but not groups) influenced the behavior of male Walleye. However, follow up work during 2022 did not detect any responses to Ford River water or male-conditioned water. Additional work is needed to determine the possible role of olfactory cues in the homing behavior of spawning-phase Walleye.

Michigan↗

An introduction to the practical and ethical perspectives on the need to advance and standardize the intracoelomic surgical implantation of electronic tags in fish

The intracoelomic surgical implantation of electronic tags (including radio and acoustic telemetry transmitters, passive integrated transponders and archival biologgers) is frequently used for conducting studies on fish. Electronic tagging studies provide information on the spatial ecology, behavior and survival of fish in marine and freshwater systems. However, any surgical procedure, particularly one where a laparotomy is performed and the coelomic cavity is opened, has the potential to alter the survival, behavior or condition of the animal which can impair welfare and introduce bias. Given that management, regulatory and conservation decisions are based on the assumption that fish implanted with electronic tags have similar fates and behavior relative to untagged conspecifics, it is critical to ensure that best surgical practices are being used. Also, the current lack of standardized surgical procedures and reporting of specific methodological details precludes cross-study and cross-year analyses which would further progress the field of fisheries science. This compilation of papers seeks to identify the best practices for the entire intracoelomic tagging procedure including pre- and post-operative care, anesthesia, wound closure, and use of antibiotics. Although there is a particular focus on salmonid smolts given the large body of literature available on that group, other life-stages and species of fish are discussed where there is sufficient knowledge. Additional papers explore the role of the veterinarian in fish surgeries, the need for minimal standards in the training of fish surgeons, providing a call for more complete and transparent procedures, and identifying trends in procedures and research needs. Collectively, this body of knowledge should help to improve data quality (including comparability and repeatability), enhance management and conservation strategies, and maintain the welfare status of tagged fish.

Reviews in Fish Biology and Fisheries↗

Portfolio theory as a management tool to guide conservation and restoration of multi-stock fish populations

Habitat degradation and harvest have upset the natural buffering mechanism (i.e., portfolio effects) of many large-scale multi-stock fisheries by reducing spawning stock diversity that is vital for generating population stability and resilience. The application of portfolio theory offers a means to guide management activities by quantifying the importance of multi-stock dynamics and suggesting conservation and restoration strategies to improve naturally occurring portfolio effects. Our application of portfolio theory to Lake Erie Sander vitreus (walleye), a large population that is supported by riverine and open-lake reef spawning stocks, has shown that portfolio effects generated by annual inter-stock larval fish production are currently suboptimal when compared to potential buffering capacity. Reduced production from riverine stocks has resulted in a single open-lake reef stock dominating larval production, and in turn, high inter-annual recruitment variability during recent years. Our analyses have shown (1) a weak average correlation between annual river and reef larval production (ρ̄ = 0.24), suggesting that a natural buffering capacity exists in the population, and (2) expanded annual production of larvae (potential recruits) from riverine stocks could stabilize the fishery by dampening inter-annual recruitment variation. Ultimately, our results demonstrate how portfolio theory can be used to quantify the importance of spawning stock diversity and guide management on ecologically relevant scales (i.e., spawning stocks) leading to greater stability and resilience of multi-stock populations and fisheries.

Lake Erie↗

Can mercury in fish be reduced by water level management? Evaluating the effects of water level fluctuation on mercury accumulation in yellow perch ( Perca flavescens )

Mercury (Hg) contamination of fisheries is a major concern for resource managers of many temperate lakes. Anthropogenic Hg contamination is largely derived from atmospheric deposition within a lake’s watershed, but its incorporation into the food web is facilitated by bacterial activity in sediments. Temporal variation in Hg content of fish (young-of-year yellow perch) in the regulated lakes of the Rainy–Namakan complex (on the border of the United States and Canada) has been linked to water level (WL) fluctuations, presumably through variation in sediment inundation. As a result, Hg contamination of fish has been linked to international regulations of WL fluctuation. Here we assess the relationship between WL fluctuations and fish Hg content using a 10-year dataset covering six lakes. Within-year WL rise did not appear in strongly supported models of fish Hg, but year-to-year variation in maximum water levels (∆maxWL) was positively associated with fish Hg content. This WL effect varied in magnitude among lakes: In Crane Lake, a 1 m increase in ∆maxWL from the previous year was associated with a 108 ng increase in fish Hg content (per gram wet weight), while the same WL change in Kabetogama was associated with only a 5 ng increase in fish Hg content. In half the lakes sampled here, effect sizes could not be distinguished from zero. Given the persistent and wide-ranging extent of Hg contamination and the large number of regulated waterways, future research is needed to identify the conditions in which WL fluctuations influence fish Hg content.

Ecotoxicology↗

Status of coregonine fishes in the Laurentian Great Lakes

The post-glacial coregonine assemblage in the Great Lakes included several species of the genera Prosopium and Coregonus. Overfishing, habitat degradation, and competition with various exotic fish species severely reduced coregonine abundance and altered their distribution by the mid to latter part of the 20th century. Most of the original Coregonus species, some which were endemic to the Great Lakes, are now extinct or are extremely rare. The prevailing coregonines are mostly benthic and deep-water species, contrasted to the original assemblage dominated by pelagic, nearshore species. Lake whitefish (Coregonus clupeaformis) populations have recovered and now support record fisheries in Lakes Superior, Michigan, and Huron. Bloaters (C. hoyi) have recovered to dominate the planktivorous fish community in Lake Michigan and are rapidly increasing in Lake Huron. The recent resurgence in some coregonine populations are linked to declines in exotic fish populations and favorable climatic changes. The reduced diversity of the coregonines may explain the dominance of the remaining species. The stability of this simplified coregonine community is uncertain but the existing coregonines have demonstrated resiliency.

Polskie Archiwum Hydrobiologii↗

Effect of gear selectivity on recommended allowable harvest with application to the Lake Erie yellow perch fishery

Because the 57-mm-mesh gill net is the predominant gear in the Lake Eric fishery for yellow perch Perca flavescens , gear selectivity is an important factor operating in that fishery. The selectivity curve for age-groups 2–6 is roughly symmetrical with peak vulnerability at age 4; younger and older perch are substantially less susceptible to the gear. The Beverton-Holt yield-per-recruit and Ricker equilibrium yield models were applied to the west-central Lake Erie yellow perch fishery to examine the effect of gear selectivity on yield-per-recruit analysis. All fish older than a specified recruitment age are assumed to he equally vulnerable in the Beverton-Holt yield-per-recruit analysis, but the Ricker equilibrium yield model can explicitly accommodate gear selectivity. Optimal fishing rate was estimated with both models, and then recommended allowable harvests were generated based on yellow perch population size estimates. Inclusion of gear selectivity in the yield-per-recruit analysis resulted in a 12% decrease in recommended allowable harvest. When skewed gear selectivity curves were investigated, gear selectivity had a still more pronounced effect on recommended allowable harvest.

North American Journal of Fisheries Management↗

Using video survey to examine the effect of habitat on gag grouper encounter

Gag is a reef fish that was declared overfished in the Gulf of Mexico (GOM) in 2009. Although Gag are no longer listed as overfished, fisheries managers are concerned that stocks may not be recovering. Our objective was to identify habitat characteristics important to Gag, and their effect on the probability of Gag occurrence. We obtained data from three separate fisheries-independent video surveys that sampled in the eastern GOM from 2010-2017: the National Atmospheric and Oceanic Administration (NOAA) Panama City, FL Office, the NOAA Southeast Area Monitoring and Assessment Program, and the Florida Fish and Wildlife Research Institute. We ran a separate mixed effects logistic regression for each survey, and used Akaike’s Information Criteria to determine the best fitting models. Some variables - percent rock coverage, vertical relief, latitude, and depth - were present in all confidence models. Depth did not have the same relationship with Gag across all surveys, suggesting that shallower habitats (<50 m) might be more suitable for juveniles, whereas deeper habitats (>50 m) might be more suitable for adults. Managers may be able to help Gag and encourage their recovery by using these data to establish or expand protected areas throughout shallower waters.

Florida↗

Size selectivity of sampling gears used to sample Kokanee

Kokanee Oncorhynchus nerka provide valued recreational fisheries and also serve as a prey resource for economically, socially, and ecologically important fishes. As such, management of kokanee is a major focus of natural resource agencies. Kokanee are typically monitored using midwater trawls, but the interpretation of data collected using midwater trawls is difficult due to the unknown size selectivity of the gear. We sought to assess the length selectivity of midwater trawls by comparing estimates obtained from midwater trawls with estimates obtained from gill nets adjusted for size selectivity. Experimental curtain gill nets and midwater trawls were used in conjunction to sample kokanee in seven lentic systems in Idaho. The size selectivity of gill nets was estimated by accounting for the probability of encounter and the probability of retention. Estimates of size selectivity were then used to adjust the length distribution of fish sampled in gill nets. The adjusted length distribution of fish sampled in gill nets was compared with estimates obtained from midwater trawls to identify potential size selectivity of midwater trawls. A pattern of size selectivity was apparent for both sampling techniques. The average length of kokanee sampled with midwater trawls was 111 mm; whereas, kokanee sampled with gill nets had a mean length of 235 mm. Our results suggest experimental gill nets are useful for common sampling of kokanee (e.g., trend monitoring) because the gear is less size selective than midwater trawls and is adjustable for size selectivity. However, midwater trawls are likely the best gear for addressing questions associated with early life history. Overall, our results provide a better understanding of gill-net and midwater trawl selectivity and ultimately improve the ability to sample and manage the species.

North American Journal of Fisheries Management↗

Growth, condition, and trophic relations of stocked trout in southern Appalachian mountain streams

Stream trout fisheries are among the most popular and valuable in the United States, but many are dependent on hatcheries to sustain fishing and harvest. Thus, understanding the ecology of hatchery‐reared trout stocked in natural environments is fundamental to management. We evaluated the growth, condition, and trophic relations of Brook Trout Salvelinus fontinalis , Brown Trout Salmo trutta , and Rainbow Trout Oncorhynchus mykiss that were stocked in southern Appalachian Mountain streams in western North Carolina. Stocked and wild (naturalized) trout were sampled over time (monthly; September 2012–June 2013) to compare condition and diet composition and to evaluate temporal dynamics of trophic position with stable isotope analysis. Relative weights ( W r ) of stocked trout were inversely associated with their stream residence time but were consistently higher than those of wild trout. Weight loss of harvested stocked trout was similar among species and sizes, but fish stocked earlier lost more weight. Overall, 40% of 141 stomachs from stocked trout were empty compared to 15% of wild trout stomachs ( N = 26). We identified a much higher rate of piscivory in wild trout (18 times that of stocked trout), and wild trout were 4.3 times more likely to consume gastropods relative to stocked trout. Hatchery‐reared trout were isotopically similar to co‐occurring wild fish for both δ 13 C and δ 15 N values but were less variable than wild trout. Differences in sulfur isotope ratios (δ 34 S) between wild and hatchery‐reared trout indicated that the diets of wild fish were enriched in δ 34 S relative to the diets of hatchery‐reared fish. Although hatchery‐reared trout consumed prey items similar to those of wild fish, differences in consumption or behavior (e.g., reduced feeding) may have resulted in lower condition and negative growth. These findings provide critical insight on the trophic dynamics of stocked trout and may assist in developing and enhancing stream trout fisheries.

North Carolina↗

Sanctuaries for lake trout in the Great Lakes

Populations of lake trout, severely depleted in Lake Superior and virtually extirpated from the other Great Lakes because of sea lamprey predation and intense fishing, are now maintained by annual plantings of hatchery-reared fish in Lakes Michigan, Huron, and Ontario and parts of Lake Superior. The extensive coastal areas of the Great Lakes and proximity to large populations resulted in fishing pressure on planted lake trout heavy enough to push annual mortality associated with sport and commercial fisheries well above the critical level needed to reestablish self-sustaining stocks. The interagency, international program for rehabilitating lake trout includes controlling sea lamprey abundance, stocking hatchery-reared lake trout, managing the catch, and establishing sanctuaries where harvest is prohibited. Three lake trout sanctuaries have been established in Lake Michigan: the Fox Island Sanctuary of 121, 500 ha, in the Chippewa-Ottawa Treaty fishing zone in the northern region of the lake; the Milwaukee Reef Sanctuary of 160, 000 ha in midlake, in boundary waters of Michigan and Wisconsin; and Julian's Reef Sanctuary of 6, 500 ha, in Illinois waters. In northern Lake Huron, Drummond Island Sanctuary of 55, 000 ha is two thirds in Indian treaty-ceded waters in Michigan and one third in Ontario waters of Canada. A second sanctuary, Six Fathom Bank-Yankee Reef Sanctuary, in central Lake Huron contains 168, 000 ha. Sanctuary status for the Canadian areas remains to be approved by the Provincial government. In Lake Superior, sanctuaries protect the spawning grounds of Gull Island Shoal (70, 000 ha) and Devils Island Shoal (44, 000 ha) in Wisconsin's Apostle Island area. These seven sanctuaries, established by the several States and agreed upon by the States, Indian tribes, the U.S. Department of the Interior, and the Province of Ontario, contribute toward solving an interjurisdictional fishery problem.

Conference Paper↗

Capture-related stressors impair immune system function in sablefish

The sablefish Anoplopoma fimbria is a valuable North Pacific Ocean species that, when not targeted in various commercial fisheries, is often a part of discarded bycatch. Predictions of the survival of discarded fish are dependent on understanding how a fish responds to stressful conditions. Our objective was to describe the immunological health of sablefish exposed to capture stressors. In laboratory experiments designed to simulate the capture process, we subjected sablefish to various stressors that might influence survival: towing in a net, hooking, elevated seawater and air temperatures, and air exposure time. After stress was imposed, the in vitro mitogen-stimulated proliferation of sablefish leukocytes was used to evaluate the function of the immune system in an assay we validated for this species. The results demonstrated that regardless of fishing gear type, exposure to elevated seawater temperature, or time in air, the leukocytes from stressed sablefish exhibited significantly diminished proliferative responses to the T-cell mitogen, concanavalin A, or the B-cell mitogen, lipopolysaccharide. There was no difference in the immunological responses associated with seawater or air temperature. The duration and severity of the capture stressors applied in our study were harsh enough to induce significantly elevated levels of plasma cortisol and glucose, but there was no difference in the magnitude of levels among stressor treatments. These data suggest that immunological suppression occurs in sablefish subjected to capture-related stressors. The functional impairment of the immune system after capture presents a potential reason why delayed mortality is possible in discarded sablefish. Further studies are needed to determine whether delayed mortality in discarded sablefish can be caused by increased susceptibility to infectious agents resulting from stressor-mediated immunosuppression.

Transactions of the American Fisheries Society↗

Leveraging angler effort to inform fisheries management: Using harvest and harvest rate to estimate abundance of White Sturgeon

Traditional methods for estimating abundance of fish populations are not feasible in some systems due to complex population structure and constraints on sampling effort. Lincoln’s estimator provides a technique that uses harvest and harvest rate to estimate abundance. Using angler catch data allows assumptions of the estimator to be addressed without relying on methods that could be prohibitively field-intensive or costly. Historic estimates of White Sturgeon Acipenser transmontanus abundance in the Sacramento–San Joaquin River basin have been obtained using mark–recapture methods; however, White Sturgeon population characteristics often cause violations of model assumptions, such as population closure and independent capture probabilities. We developed a version of Lincoln’s estimator using a joint likelihood, estimated abundance of White Sturgeon in the Sacramento–San Joaquin River basin in 2015 using this method and empirical data and assessed accuracy and precision of estimates in a simulation study. Estimating abundance using harvest and harvest rate, as represented by our model framework, has the potential to be precise and accurate. The joint likelihood–based approach fitted using Bayesian methods is advantageous because it includes all sources of variation in a single model. Precision of abundance estimates was low with application of the model to White Sturgeon in the Sacramento–San Joaquin River basin and to similar conditions in a simulated dataset. Using simulation, precision and accuracy increased with increases in the number of high-reward and standard tags released, tag reporting rate, tag retention rate, and harvest rate. Results demonstrate potential sources of error when using this approach and suggest that increasing the number of tagged fish and tag reporting rate are potential actions to improve precision and accuracy of abundance estimates of the model.

California↗