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At least 865 records · Page 48Linked to original sources

USGS2020

The seasonal energetic landscape of an apex marine carnivore, the polar bear

Divergent movement strategies have enabled wildlife populations to adapt to environmental change. In recent decades, the Southern Beaufort Sea subpopulation of polar bears (Ursus maritimus) has developed a divergent movement strategy in response to diminishing sea ice where the majority of the subpopulation (73–85%) stays on the sea ice in summer and the remaining bears move to land. Although declines in sea ice are generally considered a challenge to energy balance in polar bears residing in some regions of the Arctic, little quantitative data exists concerning the seasonal energy expenditures of this apex marine carnivore. We used GPS satellite collars with tri-axial accelerometers and conductivity sensors to measure the location, behavior, and energy expenditure of five adult female polar bears in the southern Beaufort Sea across seasons of sea ice breakup and minimum extent. Using a Bayesian mixed-effects model, we found that energy expenditure was influenced by month, ocean depth, and habitat type (sea ice or land). Total energy expenditure from May to October ranged from 37.7 – 47.2 mJ kg-1 for individual bears. Bears that moved to land expended 7% more energy on average from May to October than bears that remained on the receding sea ice. In August, when bears were moving from the sea ice to land or moving north with the receding pack ice, bears that moved to land spent 7% more time swimming and expended 22% more energy. Meaning the immediate cost of moving to land exceeded the cost of remaining on the receding summer pack ice. These findings suggest a physiological reason why the majority of the Southern Beaufort Sea subpopulation continues to inhabit a diminishing summer ice platform. However, bears that moved to land spent 29% more time in preferred hunting habitats over the continental shelf than bears that remained on the sea ice. Bears on land also had access to subsistence-harvested bowhead whale carcasses. Hence, our findings indicate there may be a greater overall energetic benefit to move to land in this region, which suggests that the use of the diminishing summer sea ice may be functioning as an ecological trap.

Alaska↗

USGS2022

Multidecadal trends in body size of Puget Sound Chinook Salmon: Analysis of data from the Tengu Derby, a culturally unique fishery

In Pacific salmon Oncorhynchus spp., downward trends in size and abundance have been reported for species and stocks for over 40 years, but the patterns are inconsistent among regions and species. Interpretation of these trends is complicated by many possible contributing factors, including short time series, data comprising a mix of stocks, and varying gear types. Here, we present data on the mass of individual Chinook Salmon Oncorhynchus tshawytscha caught in the winter from 1946 to 2019 in central Puget Sound, Washington, by participants in what may be the longest running Pacific salmon derby in North America, the Tengu Derby. In this annual recreational fishing competition, established by Japanese Americans immediately after release from internment camps at the end of World War II, participants follow strict gear, area, and methods regulations and catch almost exclusively salmonids originating from and remaining in Puget Sound. Records revealed an overall decline in fish mass over the decades, with a high degree of variability throughout the time series. Specifically, resident Chinook Salmon exhibited several shifts, including a decrease in size from a high in the 1950s to a low around 1980, followed by an increase to another high around 1990 and then a decline over the most recent 30 years. These size trends of residents differed from those of Puget Sound Chinook Salmon as a whole. We infer that the resident fish experienced ecological conditions affecting their growth that were distinct from those of fish feeding along the Pacific Ocean in the same periods. These distinct trends in size of Chinook Salmon from common origins indicate that the different migration patterns of fish within stocks must be considered in the analysis and interpretation of body size trends and also in patterns of survival.

Washington↗

USGS2017

Season, molt, and body size influence mercury concentrations in grebes

We studied seasonal and physiological influences on mercury concentrations in western grebes (Aechmophorus occidentalis) and Clark's grebes (A. occidentalis) across 29 lakes and reservoirs in California, USA. Additionally, at three of these lakes, we conducted a time series study, in which we repeatedly sampled grebe blood mercury concentrations during the spring, summer, and early fall. Grebe blood mercury concentrations were higher among males (0.61 ± 0.12 μg/g ww) than females (0.52 ± 0.10 μg/g ww), higher among Clark's grebes (0.58 ± 0.12 μg/g ww) than western grebes (0.51 ± 0.10 μg/g ww), and exhibited a strong seasonal pattern (decreasing by 60% from spring to fall). Grebe blood THg concentrations exhibited a shallow, inverse U-shaped pattern with body size, and was lowest among the smallest and largest grebes. Further, the relationship between grebe blood mercury concentrations and wing primary feather molt exhibited a shallow U-shaped pattern, where mercury concentrations were highest among birds that had not yet begun molting, decreased approximately 24% between pre-molt and late molt, and increased approximately 19% from late molt to post-molt. Because grebes did not begin molting until mid-summer, lower grebe blood mercury concentrations observed in late summer and early fall were consistent with the onset of primary feather molt. However, because sampling date was a much stronger predictor of grebe mercury concentrations than molt, other seasonally changing environmental factors likely played a larger role than molt in the seasonal variation in grebe mercury concentrations. In the time series study, we found that seasonal trends in grebe mercury concentrations were not consistent among lakes, indicating that lake-specific variation in mercury dynamics influence the overall seasonal decline in grebe blood mercury concentrations. These results highlight the importance of accounting for sampling date, as well as ecological processes that may influence mercury concentrations, when developing monitoring programs to assess site-specific exposure risk of mercury to wildlife.

California↗

USGS1943

The age, growth, and bathymetric distribution of Reighard's chub, Leucichthys reighardi koelz, in Lake Michigan

Reighard's chub has come to be one of the most important species of the group since the serious decline in abundance of the larger representatives of the genus Leucichthys in Lake Michigan. An understanding of the biology of as many species of chubs as possible is essential if further depletion and the collapse of the fishery are to be prevented. The age and growth of 331 individuals taken in 1932 were determined. Each of the other phases of the study is based on more than 5,000 specimens collected during the three years, 1930–1932. Reighard's chub occurred most abundantly, when not spawning, in depths of 20 to 60 fathoms where the temperature of the water ranged from 38.8 to 40.6° F. It was taken at all depths where the nets were set from 12 to 97 fathoms, and in water that varied from 34.7 to 50.6° F. The abundance on the east shore was seven times that on the west shore and between two and three times that in the upper part of the lake. The data indicate the existence of separate populations on the two shores. The greater exploitation with smaller meshes in the western part of the lake probably accounts for the relative scarcity in those waters. Ecological factors are considered the probable cause of the lesser abundance in the upper lake. Spawning occurs during May and June at depths of 20 to 79 fathoms, over a wide variety of bottom materials at temperatures of 38.8 to 40.5° F. Age-group IV dominated in the samples of fish whose ages were determined and made up 50.2 per cent of the total. Age-groups V and III were the next largest groups in that order. Growth in length was most rapid during the first year of life. Growth in weight was most rapid during the first three years with the annual increment in weight about the same in each of those years. The sexes grew in both length and weight at approximately the same rate. Growth compensation occurs in the reighardi of Lake Michigan, but the first year differences were not removed entirely by the time of capture in the fifth year. The weight of the fish in the combined samples increased as the 2.468 power of the length. No relationship between condition (K) and rate of growth could be demonstrated. Condition (K) was better in 1931 than in either 1930 or 1932 and usually was better in 1930 than in 1932. The seasonal changes in relative heaviness followed the same general trend irrespective of the sex or stage of maturity of the fish. The females lost 8 per cent of their weight in spawning, but no loss of weight could be demonstrated for the males. The females were always strongly dominant in the samples except during May and June 1931 and May 1932 when the sexes occurred in about equal numbers. The relative abundance of the sexes did not change materially in age-groups II to V. There were no males assigned to age-groups VI and VII.

Transactions of the American Fisheries Society↗

USGS2017

Evidence for migratory spawning behavior by morphologically distinct Cisco (Coregonus artedi) from a small inland lake

Conservation and management of rare fishes relies on managers having the most informed understanding of the underlying ecology of the species under investigation. Cisco (Coregonus artedi), a species of conservation concern, is a cold-water pelagic fish that is notoriously variable in morphometry and life history. Published reports indicate, at spawning time, Cisco in great lakes may migrate into or through large rivers, whereas those in small lakes move inshore. Nonetheless, during a sampling trip to Follensby Pond, a 393 ha lake in the Adirondack Mountains, New York, we observed gravid Cisco swimming over an outlet sill from a narrow shallow stream and into the lake. We opportunistically dip-netted a small subsample of 11 individuals entering the lake from the stream (three female, eight male) and compared them to fish captured between 2013 and 2015 with gillnets in the lake. Stream-captured Cisco were considerably larger than lake-captured individuals at a given age, had significantly larger asymptotic length, and were present only as mature individuals between age of 3 and age 5. These results could suggest either Cisco are migrating from a nearby lake to spawn in Follensby Pond, or that a distinct morphotype of Cisco from Follensby Pond migrates out to the stream and then back in at spawning time. Our results appear to complement a handful of other cases in which Cisco spawning migrations have been documented and to provide the first evidence for such behavior in a small inland lake.

The American Midland Naturalist↗

USGS2006

An introduced predator alters Aleutian Island plant communities by thwarting nutrient subsidies

The ramifying effects of top predators on food webs traditionally have been studied within the framework of trophic cascades. Trophic cascades are compelling because they embody powerful indirect effects of predators on primary production. Although less studied, indirect effects of predators may occur via routes that are not exclusively trophic. We quantified how the introduction of foxes onto the Aleutian Islands transformed plant communities by reducing abundant seabird populations, thereby disrupting nutrient subsidies vectored by seabirds from sea to land. We compared soil and plant fertility, plant biomass and community composition, and stable isotopes of nitrogen in soil, plants, and other organisms on nine fox-infested and nine historically fox-free islands across the Aleutians. Additionally, we experimentally augmented nutrients on a fox-infested island to test whether differences in plant productivity and composition between fox-infested and fox-free islands could have arisen from differences in nutrient inputs between island types. Islands with historical fox infestations had soils low in phosphorus and nitrogen and plants low in tissue nitrogen. Soils, plants, slugs, flies, spiders, and bird droppings on these islands had low d15N values indicating that these organisms obtained nitrogen from internally derived sources. In contrast, soils, plants, and higher trophic level organisms on fox-free islands had elevated d15N signatures indicating that they utilized nutrients derived from the marine environment. Furthermore, soil phosphorus (but not nitrogen) and plant tissue nitrogen were higher on fox-free than fox-infested islands. Nutrient subsidized fox-free islands supported lush, high biomass plant communities dominated by graminoids. Fox-infested islands were less graminoid dominated and had higher cover and biomass of low-lying forbs and dwarf shrubs. While d15N profiles of soils and plants and graminoid biomass varied with island size and distance from shore, after accounting for these effects differences between fox-infested and fox-free islands still existed. Fertilization over four years caused a 24-fold increase in graminoid biomass and a shift toward a more graminoid dominated plant community typical of fox-free islands. These results indicate that apex predators can influence plant productivity and composition through complex interaction web pathways involving both top-down forcing and bottom-up nutrient exchanges across systems. ?? 2006 by the Ecological Society of America.

Ecological Monographs↗

USGS2000

Detecting change in water quality from implementation of limestone treatment systems in a coal-minded watershed

During 1996-97, a variety of limestone-based treatment systems were implemented to neutralize acidic mine drainage and reduce the transport of dissolved metals in the northern part of the Swatara Creek watershed, which drains a 43-mi2 (112-km2) area in the Southern Anthracite Field upstream from Ravine, Pa. Since 1996, the current project has monitored water quality upstream and downstream of each treatment and at integrator sites on lower reaches of Swatara Creek. Continuous measurements of pH and specific conductance and periodic sampling for alkalinity, acidity, sulfate, and metals upstream and downstream of each treatment system show that (1) open limestone channels and limestone-sand dosing generally had negligible effects on water quality and (2) limestone diversion wells and limestone drains generally were effective at producing near-neutral pH and attenuating dissolved metals during baseflow but were less effective during stormflow conditions. Storm runoff in this area commonly is acidic, and, as streamflow volume increases during stormflow conditions, a smaller fraction of total flow is treated and (or) residence time in the treatment system is reduced. Monitoring on the mainstem of Swatara Creek indicates watershed-scale effects owing primarily to changes in mining practices and secondarily to watershed-wide implementation of treatment systems. Most underground mines in the Swatara Creek Basin were abandoned before 1960 and are presently flooded. Drainage from these mines contributes substantially to baseflow in Swatara Creek. For Swatara Creek at Ravine, Pa., which is immediately downstream of the mined area, long-term data collected since 1959 indicate sulfate concentration declined from about 150 mg/L in 1959 to 75 mg/L in 1999; pH increased sharply from 3.5-4.4 (median ~4) to 4.6-7.0 (median ~6) after 1975. These trends resulted from a decline in pyrite oxidation and the onset of carbonate buffering. Because these long-term attenuation processes have had such a pronounced effect on water quality in Swatara Creek, the effects of recent implementation of limestone treatments are difficult to detect at a watershed scale. Nevertheless, during ecological surveys prior to 1991, no fish were found in Swatara Creek at Ravine. Only six species of fish were found in 1994 and 1996. However, increasing numbers of fish have been found annually since 1996. In 1999, 21 species of fish were documented. The recent monitoring on the mainstem of Swatara Creek indicates the limestone treatments mitigate extreme fluctuations in pH during storm events; however, additional buffering capacity is needed to maintain near-neutral pH of Swatara Creek during large storm events. Concentration 2 of sulfate, specific conductance, and pH are inversely related to streamflow at Ravine, indicating dilution and acidification during stormflow. Declines in stream-water pH to values approaching 5.0 could result in the remobilization of adsorbed or precipitated metals associated with sediments; declines in pH below 5.0 could cause injury to aquatic organisms. Generally, to maintain stream pH during storms, additional or larger limestone diversion wells could be constructed to begin or increase alkalinity production as the stream stage rises and/or additional or larger limestone drains could be constructed to produce greater amounts of alkalinity and enhance the buffering capacity of baseflow.

Pennsylvania↗

USGS2026

Restoration based on cost-benefit optimization: A grasslands pilot study

Ecological restoration is essential to meeting global biodiversity conservation goals. Given limited conservation budgets, deciding where to restore habitat is a key challenge for the coming decade. We developed a spatially explicit framework to optimize ecological restoration site selection by integrating land use history, species distributions, and economic costs. The framework includes the following steps: identify potential restoration area based on relevant environmental measures like land use; identify species of interest; calculate restoration benefits by modeling habitat and climate suitability and estimating reduced extinction risk associated with restoring a particular land parcel based on a modified species–area relationship; aggregate benefits across species; and compare to parcel-level land acquisition costs. We applied linear programming to maximize conservation benefit/restoration cost ratios to identify optimized restoration sites. We illustrate this approach using a case study for highly threatened grassland ecosystems in the Great Plains region of Kansas, USA. We selected five grassland animal species (greater prairie chickens [ Tympanuchus cupido ], lesser prairie chickens [ Tympanuchus pallidicinctus ], swift fox [ Vulpes velox ], pronghorn [ Antilocapra americana ], and regal fritillary [ Speyeria idalia ]) as indicators of restoration benefit across taxa. For the indicator species that we chose, shortgrass and mixed-grass prairies had the highest conservation benefit to cost ratio. Setting a minimum restoration threshold for each habitat type allowed us to identify high-priority tallgrass prairie sites. Despite increasing interest in ecological restoration, optimizing restoration site selection is challenging because one must consider habitat features that do not currently exist. The modeling approach described here is flexible and can be updated for different ecosystems, species, and conservation priorities. We outline potential alterations that can be made in future analyses, depending on desired restoration goals.

Kansas↗

USGS2013

Tagging methods for estimating population size and mortality rates of inland striped bass populations

Striped bass Morone saxatilis in inland reservoirs play an important role ecologically and in supporting recreational fishing. To manage these populations, biologists need information about abundance and mortality. Abundance estimates can be used to assess the effectiveness of stocking programs that maintain most reservoir striped bass populations. Mortality estimates can indicate the relative impact of fishing versus natural mortality and the need for harvest regulation. The purpose of this chapter is to evaluate tagging studies as a way of obtaining information about abundance and mortality. These approaches can be grouped into three broad categories: tag recapture, tag return, and telemetry. Tag-recapture methods are typically used to estimate population size and other demographic parameters but are often difficult to apply in large systems. A fishing tournament can be an effective way of generating tagging or recapture effort in large systems, compared to using research sampling only. Tag-return methods that rely on angler harvest and catch and release can be used to estimate fishing (F) and natural (M) mortality rates and are a practical approach in large reservoirs. The key to success in tag-return studies is to build in auxiliary studies to estimate short-term tagging mortality, short- and longterm tag loss, reporting rate, and mortality associated with catch and release. F and M can also be estimated using telemetry tags. Advantages of this approach are that angler nonreporting does not bias estimates and fish with transmitters provide useful ecological data. Cost can be a disadvantage of telemetry studies; thus, combining telemetry tags with conventional tag returns in an integrated analysis is often the optimal approach. In summary, tagging methods can be a powerful tool for assessing the effectiveness of inland striped bass stocking programs and the relative impact of fishing versus natural mortality

American Fisheries Society Symposium↗

USGS2016

Vegetative response to water availability on the San Carlos Apache Reservation

On the San Carlos Apache Reservation in east-central Arizona, U.S.A., vegetation types such as ponderosa pine forests, pinyon-juniper woodlands, and grasslands have significant ecological, cultural, and economic value for the Tribe. This value extends beyond the tribal lands and across the Western United States. Vegetation across the Southwestern United States is susceptible to drought conditions and fluctuating water availability. Remotely sensed vegetation indices can be used to measure and monitor spatial and temporal vegetative response to fluctuating water availability conditions. We used the Moderate Resolution Imaging Spectroradiometer (MODIS)-derived Modified Soil Adjusted Vegetation Index II (MSAVI 2 ) to measure the condition of three dominant vegetation types (ponderosa pine forest, woodland, and grassland) in response to two fluctuating environmental variables: precipitation and the Standardized Precipitation Evapotranspiration Index (SPEI). The study period covered 2002 through 2014 and focused on a region within the San Carlos Apache Reservation. We determined that grassland and woodland had a similar moderate to strong, year-round, positive relationship with precipitation as well as with summer SPEI. This suggests that these vegetation types respond negatively to drought conditions and are more susceptible to initial precipitation deficits. Ponderosa pine forest had a comparatively weaker relationship with monthly precipitation and summer SPEI, indicating that it is more buffered against short-term drought conditions. This research highlights the response of multiple, dominant vegetation types to seasonal and inter-annual water availability. This research demonstrates that multi-temporal remote sensing imagery can be an effective tool for the large scale detection of vegetation response to adverse impacts from climate change and support potential management practices such as increased monitoring and management of drought-affected areas. Different vegetation types displayed various responses to water availability, further highlighting the need for individual management plans for forest and woodland, especially considering the projected drier conditions in the Southwest U.S. and other arid or semi-arid regions around the world.

Arizona↗

USGS2016

Bacterial genomics reveal the complex epidemiology of an emerging pathogen in arctic and boreal ungulates

Northern ecosystems are currently experiencing unprecedented ecological change, largely driven by a rapidly changing climate. Pathogen range expansion, and emergence and altered patterns of infectious disease, are increasingly reported in wildlife at high latitudes. Understanding the causes and consequences of shifting pathogen diversity and host-pathogen interactions in these ecosystems is important for wildlife conservation, and for indigenous populations that depend on wildlife. Among the key questions are whether disease events are associated with endemic or recently introduced pathogens, and whether emerging strains are spreading throughout the region. In this study, we used a phylogenomic approach to address these questions of pathogen endemicity and spread for Erysipelothrix rhusiopathiae , an opportunistic multi-host bacterial pathogen associated with recent mortalities in arctic and boreal ungulate populations in North America. We isolated E. rhusiopathiae from carcasses associated with large-scale die-offs of muskoxen in the Canadian Arctic Archipelago, and from contemporaneous mortality events and/or population declines among muskoxen in northwestern Alaska and caribou and moose in western Canada. Bacterial genomic diversity differed markedly among these locations; minimal divergence was present among isolates from muskoxen in the Canadian Arctic, while in caribou and moose populations, strains from highly divergent clades were isolated from the same location, or even from within a single carcass. These results indicate that mortalities among northern ungulates are not associated with a single emerging strain of E. rhusiopathiae , and that alternate hypotheses need to be explored. Our study illustrates the value and limitations of bacterial genomic data for discriminating between ecological hypotheses of disease emergence, and highlights the importance of studying emerging pathogens within the broader context of environmental and host factors.

Frontiers in Microbiology↗

USGS1981

Chrysophyte cysts as potential environmental indicators

Many Chrysophyte algae produce morphologically distinctive, siliceous, microscopic cysts during a resting stage of their life cycles; these cysts are often preserved in sediments. Scanning electron microscopy and Nomarski optics permit much more detailed observation of these cysts than was heretofore possible. We have used an ecologic and biogeographic approach to study the distribution of cyst forms in sediments and have established that many cyst types are found only in specific habitats, such as montane lakes, wet meadows, ephemeral ponds, and Sphagnum bogs. In the samples we have studied, cysts seem to be most common in fluctuating fresh-water habitats of low to moderate pH and some winter freezing. Numerous taxonomic problems have yet to be resolved. We believe that chrysophyte cysts have the potential to become a useful tool for both modern environmental assessments and paleoecological studies of Cenozoic fresh-water lacustrine deposits.

Geological Society of America Bulletin↗

USGS2016

Roost site selection by ring-billed and herring gulls

Gulls ( Larus spp.) commonly roost in large numbers on inland and coastal waters, yet there is little information on how or where gulls choose sites for roosting. Roost site selection can lead to water quality degradation or aviation hazards when roosts are formed on water supply reservoirs or are close to airports. Harassment programs are frequently initiated to move or relocate roosting gulls but often have mixed results because gulls are reluctant to leave or keep returning. As such, knowledge of gull roost site selection and roosting ecology has applied and ecological importance. We used satellite telemetry and an information-theoretic approach to model seasonal roost selection of ring-billed ( L. delawarensis ) and herring gulls ( L. argentatus ) in Massachusetts, USA. Our results indicated that ring-billed gulls preferred freshwater roosts and will use a variety of rivers, lakes, and reservoirs. Herring gulls regularly roosted on fresh water but used salt water roosts more often than ring-billed gulls and also roosted on a variety of land habitats. Roost modeling showed that herring and ring-billed gulls selected inland fresh water roosts based on size of the water body and proximity to their last daytime location; they selected the largest roost closest to where they ended the day. Management strategies to reduce or eliminate roosting gulls could identify and try to eliminate other habitat variables (e.g., close-by foraging sites) that are attracting gulls before attempting to relocate or redistribute (e.g., through hazing programs) roosting birds.

Massachusetts↗

USGS2012

A caveat regarding diatom-inferred nitrogen concentrations in oligotrophic lakes

Atmospheric deposition of reactive nitrogen (Nr) has enriched oligotrophic lakes with nitrogen (N) in many regions of the world and elicited dramatic changes in diatom community structure. The lakewater concentrations of nitrate that cause these community changes remain unclear, raising interest in the development of diatom-based transfer functions to infer nitrate. We developed a diatom calibration set using surface sediment samples from 46 high-elevation lakes across the Rocky Mountains of the western US, a region spanning an N deposition gradient from very low to moderate levels (<1 to 3.2 kg Nr ha −1 year −1 in wet deposition). Out of the fourteen measured environmental variables for these 46 lakes, ordination analysis identified that nitrate, specific conductance, total phosphorus, and hypolimnetic water temperature were related to diatom distributions. A transfer function was developed for nitrate and applied to a sedimentary diatom profile from Heart Lake in the central Rockies. The model coefficient of determination (bootstrapping validation) of 0.61 suggested potential for diatom-inferred reconstructions of lakewater nitrate concentrations over time, but a comparison of observed versus diatom-inferred nitrate values revealed the poor performance of this model at low nitrate concentrations. Resource physiology experiments revealed that nitrogen requirements of two key taxa were opposite to nitrate optima defined in the transfer function. Our data set reveals two underlying ecological constraints that impede the development of nitrate transfer functions in oligotrophic lakes: (1) even in lakes with nitrate concentrations below quantification (<1 μg L −1 ), diatom assemblages were already dominated by species indicative of moderate N enrichment; (2) N-limited oligotrophic lakes switch to P limitation after receiving only modest inputs of reactive N, shifting the controls on diatom species changes along the length of the nitrate gradient. These constraints suggest that quantitative inferences of nitrate from diatom assemblages will likely require experimental approaches.

Colorado, Idaho, Montana, Utah, Wyoming↗

USGS2017

Evaluating species-specific changes in hydrologic regimes: an iterative approach for salmonids in the Greater Yellowstone Area (USA)

Despite the importance of hydrologic regimes to the phenology, demography, and abundance of fishes such as salmonids, there have been surprisingly few syntheses that holistically assess regional, species-specific trends in hydrologic regimes within a framework of climate change. Here, we consider hydrologic regimes within the Greater Yellowstone Area in the Rocky Mountains of western North America to evaluate changes in hydrologic metrics anticipated to affect salmonids, a group of fishes with high regional ecological and socioeconomic value. Our analyses assessed trends across different sites and time periods (1930–, 1950–, and 1970–2015) as means to evaluate spatial and temporal shifts. Consistent patterns emerged from our analyses indicating substantial shifts to (1) earlier peak discharge events; (2) reductions of summer minimum streamflows; (3) declines in the duration of river ice; and (4) decreases in total volume of water. We found accelerated trends in hydrologic change for the 1970–2015 period, with an average peak discharge 7.5 days earlier, 27.5% decline in summer minimum streamflows, and a 15.6% decline in the annual total volume of water (1 October–September 30) across sites. We did observe considerable variability in magnitude of change across sites, suggesting different levels of vulnerability to a changing climate. Our analyses provide an iterative means for assessing climate predictions and an important step in identifying the climate resilience of landscapes.

Greater Yellowstone Area↗

USGS2015

Rapid isolation of microsatellite DNAs and identification of polymorphic mitochondrial DNA regions in the fish rotan (Perccottus glenii) invading European Russia

Human-mediated translocations and subsequent large-scale colonization by the invasive fish rotan (Perccottus glenii Dybowski, 1877; Perciformes, Odontobutidae), also known as Amur or Chinese sleeper, has resulted in dramatic transformations of small lentic ecosystems. However, no detailed genetic information exists on population structure, levels of effective movement, or relatedness among geographic populations of P. glenii within the European part of the range. We used massively parallel genomic DNA shotgun sequencing on the semiconductor-based Ion Torrent Personal Genome Machine (PGM) sequencing platform to identify nuclear microsatellite and mitochondrial DNA sequences in P. glenii from European Russia. Here we describe the characterization of nine nuclear microsatellite loci, ascertain levels of allelic diversity, heterozygosity, and demographic status of P. glenii collected from Ilev, Russia, one of several initial introduction points in European Russia. In addition, we mapped sequence reads to the complete P. glenii mitochondrial DNA sequence to identify polymorphic regions. Nuclear microsatellite markers developed for P. glenii yielded sufficient genetic diversity to: (1) produce unique multilocus genotypes; (2) elucidate structure among geographic populations; and (3) provide unique perspectives for analysis of population sizes and historical demographics. Among 4.9 million filtered P. glenii Ion Torrent PGM sequence reads, 11,304 mapped to the mitochondrial genome (NC_020350). This resulted in 100 % coverage of this genome to a mean coverage depth of 102X. A total of 130 variable sites were observed between the publicly available genome from China and the studied composite mitochondrial genome. Among these, 82 were diagnostic and monomorphic between the mitochondrial genomes and distributed among 15 genome regions. The polymorphic sites (N = 48) were distributed among 11 mitochondrial genome regions. Our results also indicate that sequence reads generated from two three-hour runs on the Ion Torrent PGM can generate a sufficient number of nuclear and mitochondrial markers to improve understanding of the evolutionary and ecological dynamics of non-model and in particular, invasive species.

European Russia↗

USGS2008

Allowing macroalgae growth forms to emerge: Use of an agent-based model to understand the growth and spread of macroalgae in Florida coral reefs, with emphasis on Halimeda tuna

The growth patterns of macroalgae in three-dimensional space can provide important information regarding the environments in which they live, and insights into changes that may occur when those environments change due to anthropogenic and/or natural causes. To decipher these patterns and their attendant mechanisms and influencing factors, a spatially explicit model has been developed. The model SPREAD (SPatially-explicit Reef Algae Dynamics), which incorporates the key morphogenetic characteristics of clonality and morphological plasticity, is used to investigate the influences of light, temperature, nutrients and disturbance on the growth and spatial occupancy of dominant macroalgae in the Florida Reef Tract. The model species, Halimeda and Dictyota spp., are modular organisms, with an 'individual' being made up of repeating structures. These species can also propagate asexually through clonal fragmentation. These traits lead to potentially indefinite growth and plastic morphology that can respond to environmental conditions in various ways. The growth of an individual is modeled as the iteration of discrete macroalgal modules whose dynamics are affected by the light, temperature, and nutrient regimes. Fragmentation is included as a source of asexual reproduction and/or mortality. Model outputs are the same metrics that are obtained in the field, thus allowing for easy comparison. The performance of SPREAD was tested through sensitivity analysis and comparison with independent field data from four study sites in the Florida Reef Tract. Halimeda tuna was selected for initial model comparisons because the relatively untangled growth form permits detailed characterization in the field. Differences in the growth patterns of H. tuna were observed among these reefs. SPREAD was able to closely reproduce these variations, and indicate the potential importance of light and nutrient variations in producing these patterns. ?? 2008 Elsevier B.V.

Ecological Modelling↗

USGS2022

Statistical consideration of nonrandom treatment applications reveal region-wide benefits of widespread post-fire restoration action

Accurate predictions of ecological restoration outcomes are needed across the increasingly large landscapes requiring treatment following disturbances. However, observational studies often fail to account for nonrandom treatment application, which can result in invalid inference. Examining a spatiotemporally extensive management treatment-- post-fire seeding of declining sagebrush shrubs across the semiarid U.S. over two decades -- we quantify drivers and consequences of selection biases in restoration, using remotely sensed data. Treatments were disproportionately applied in more stressful, degraded ecological conditions. Failure to incorporate nonrandom treatment allocation led to the conclusion that costly, widespread seedings were unsuccessful; however, after considering biases, restoration positively affected sagebrush recovery. Treatment effect sizes varied with climate, indicating possible prioritization criteria for interventions. Our findings revise the perspective that widespread post-fire sagebrush seedings have been broadly “unsuccessful” and demonstrate how selection biases can pose substantive inferential hazards in observational studies of restoration efficacy and development of restoration theory.

California, Colorado, Idaho, Nevada, Oregon, Utah,↗