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At least 865 records · Page 48Linked to original sources
USGS2022

Hydrologic and environmental thresholds in stream fish assemblage structure across flow regimes

The characteristic pattern of variation in flow magnitude, frequency, duration, timing, and rate of change defines the flow regime of rivers and streams and is a key driver of ecosystem processes in fluvial ecosystems. Understanding how freshwater biotic assemblages change across gradients of hydrology and anthropogenic-source disturbance in different streamflow regimes is crucial to managing for sustainable environmental flows and watershed conservation. We compiled long-term (1916–2016) occurrence records for fishes collected in the Ouachita-Ozark Interior Highlands and West Gulf Coastal Plain streams, together with hydrologic metrics calculated from daily streamflow data measured at USGS stream gauging stations (n = 111), to examine important drivers and thresholds for fish assemblage turnover in groundwater (GW), runoff (RO), and intermittent (INT) flow regimes. We also examined the importance of spatial gradients (latitude, longitude, elevation, drainage area) and anthropogenic-source stressors (Hydrologic Disturbance Index; HDI) for fish assemblage turnover using a gradient forest modeling approach. Watershed fragmentation was of high importance for fish assemblage turnover in RO and INT streams, while changes in dam storage were more important for fishes in GW streams. Hydrologic metrics describing seasonal and stochastic properties of daily streamflow (Mag6) were most important for fish assemblage turnover in INT streams. Timing of high flow events had significantly higher importance compared to flow magnitude, duration, and frequency metrics, especially for fish assemblages in GW and INT streams. The frequency and timing of low flow events had high importance for fish assemblage turnover across all stream flow classes, while the magnitude of low flows and the magnitude and rate of change of average flows was most important for INT stream fish assemblages. In addition to benefiting multi-species conservation and management actions through identification of local and regional flow-ecology relationships generalized across different flow regimes, the results of this study provide a better understanding of complex nonlinear threshold effects, which is critical to anticipating changes in aquatic ecosystems and communities.

Arkansas, Missouri, Oklahoma↗
USGS2025

Pesticide contamination detected across five wildlife refuges in the Sacramento Valley of California

An important goal for the applied ecological sciences is to understand the extent to which the biodiversity on conserved or managed lands is exposed to anthropogenic stressors. Among the various categories of conserved lands in the United States, the National Wildlife Refuge System is focused on the protection and management of native wildlife and plant populations. Refuge lands can be associated with wetlands and, especially in California, tend to be near areas of intense human use, including agriculture. The proximity of refuges to cultivated lands results in potential exposure to pesticide drift, which increases the possibility of non-target effects on plants and wildlife. We used a passive sampler approach to quantify aerial pesticide deposition during 28 days in spring of 2023, across five refuges in the Sacramento Valley of California. Pesticides were detected across all refuges and plots within the study area, with 36 individual compounds identified, including insecticides, herbicides, and fungicides, from 176 silicone bands from 49 plots. Distance to agriculture was not an important predictor in our models for most indices of contamination. However, our models revealed that the nearest crop type was an important mediator of the importance of distance to agriculture, as fungicide contamination decreased with distance to agriculture only when orchards were the nearest crop type. The overall lack of distance effects suggests that the interior of refuges in the study area do not necessarily provide more protection from pesticides than refuge edges, although larger refuges could offer more protection. We currently lack information on how the level of contamination found herein is biologically relevant to wildlife, and ongoing monitoring efforts have found productive communities of insects in the study area. The results of this study provide a foundation for future investigations on refuges to analyze impacts of specific pesticide compounds on plants and wildlife.

California↗
USGS2022

Freshwater unionid mussels threatened by predation of Round Goby (Neogobius melanostomus)

Indigenous freshwater mussels (Unionidae) are integral to riverine ecosystems, playing a pivotal role in aquatic food webs and providing ecological services. With populations on the decline worldwide, freshwater mussels are of conservation concern. In this study, we explore the propensity of the invasive Round Goby (Neogobius melanostomus) fish to prey upon indigenous freshwater mussels. First, we conducted lab experiments where Round Gobies were given the opportunity to feed on juvenile unionid mussels and macroinvertebrates, revealing rates and preferences of consumption. Several Round Gobies consumed whole freshwater mussels during these experiments, as confirmed by mussel counts and x-ray images of the fishes. Next, we investigated Round Gobies collected from stream habitats of the French Creek watershed, which is renowned for its unique and rich aquatic biodiversity. We developed a novel DNA metabarcoding method to identify the specific species of mussels consumed by Round Goby and provide a new database of DNA gene sequences for 25 indigenous unionid mussel species. Several of the fishes sampled had consumed indigenous mussels, including the Elktoe (non-endangered), Creeper (non-endangered), Long Solid (state endangered), and Rayed Bean (federally endangered) species. The invasive Round Goby poses a growing threat to unionid mussels, including species of conservation concern. The introduction of the invasive Round Goby to freshwaters of North America is shaping ecosystem transitions within the aquatic critical zone having widespread implications for conservation and management.

Maryland, New York, Pennsylvania, West Virginia↗
USGS2023

Influence of fine-scale habitat characteristics on sage-grouse nest site selection and nest survival varies by mesic and xeric site conditions

Resource managers and scientists across western U.S. agencies seek methodologies for identifying environmental attributes important to both wildlife conservation and broad-scale land stewardship. The Greater Sage-Grouse ( Centrocercus urophasianus ; hereafter, sage-grouse) exemplifies a species in need of this broad-scale approach given widespread population declines that have resulted from loss and degradation of habitat from natural and anthropogenic disturbances. These include agricultural land conversion, conifer expansion, energy development, and wildfire coupled with ecological conversion by invasive plants such as cheatgrass ( Bromus tectorum ). Development of habitat assessments and conservation actions for sage-grouse benefit from studies that link demographic responses to habitat selection patterns. To address this, we examined nest survival of sage-grouse in relation to fine-scale habitat patterns (i.e., field-based habitat measurements) that influenced nest site selection, using data from nests of telemetered females at 17 sites over 6 years in Nevada and northeastern California, USA. Importantly, sites spanned mesic and xeric average precipitation conditions that contributed substantially to vegetation community structure across cold desert ecosystems of the North American Great Basin. Vegetative cover immediately surrounding sage-grouse nests was important for both nest site selection and nest survival, but responses varied between mesic and xeric sites. For example, while taller perennial grasses were selected at xeric sites, we found no evidence of selection for perennial grass at mesic sites, indicating a functional response to availability of habitat features between hydrographic regions. Furthermore, perennial grass height and forb height both had positive effects on nest survival at xeric sites, but we found varying effects at mesic sites. We emphasize that precipitation conditions driving ecosystem productivity vary regionally among sagebrush communities, shaping vegetation structure and suitable habitat conditions for nesting sage-grouse.

Ornithological Applications↗
USGS2026

Why are ornithological studies so focused on the breeding stage? A test of hypotheses

Unequal representation of focal research areas can arise during the initial stages of project development when investigators make decisions about what, when, and where to study. Regarding when research is conducted, publications on vertebrates are strongly skewed toward breeding-stage studies, leaving sizeable gaps in our knowledge pertaining to behavior and demography in nonbreeding stages. Here, we quantified how the focus on different annual cycle stages has changed over the past 64 years in the field of ornithology, and tested 3 hypotheses to explain underlying correlates of the focus on different stages. We surveyed field-based studies published in Ornithology from 1960 to 2024 and documented the annual cycle stages examined, regions of study, migratory strategies of focal species, and author affiliation for each paper. The tendency to conduct breeding-stage research in ornithology became more, rather than less, pronounced over the 64-year interval, and breeding-stage research was more common when field work focused on migratory species. Therefore, investigators, authors, and editors could likely increase representation of other annual-cycle stages by supporting, conducting, and publishing more studies in the tropics and more studies using remote tracking technologies. More nonbreeding and year-round studies are necessary to fully understand the ecology and evolution of species and develop the most effective strategies for conservation.

Ornithology↗
USGS2019

The future is now: Amplicon sequencing and sequence capture usher in the conservation genomics era

The genomics revolution has initiated a new era of population genetics where genome-wide data are frequently used to understand complex patterns of population structure and selection. However, the application of genomic tools to inform management and conservation has been somewhat rare outside a few well studied species. Fortunately, two recently developed approaches, amplicon sequencing and sequence capture, have the potential to significantly advance the field of conservation genomics. Here, amplicon sequencing refers to highly multiplexed PCR followed by high-throughput sequencing (e.g., GTseq), and sequence capture refers to using capture probes to isolate loci from reduced-representation libraries (e.g., Rapture). Both approaches allow sequencing of thousands of individuals at relatively low costs, do not require any specialized equipment for library preparation, and generate data that can be analyzed without sophisticated computational infrastructure. Here, we discuss the advantages and disadvantages of each method and provide a decision framework for geneticists who are looking to integrate these methods into their research programme. While it will always be important to consider the specifics of the biological question and system, we believe that amplicon sequencing is best suited for projects aiming to genotype <500 loci on many individuals (>1,500) or for species where continued monitoring is anticipated (e.g., long-term pedigrees). Sequence capture, on the other hand, is best applied to projects including fewer individuals or where >500 loci are required. Both of these techniques should smooth the transition from traditional genetic techniques to genomics, helping to usher in the conservation genomics era.

Molecular Ecology Resources↗
USGS2017

Estimating the per-capita contribution of habitats and pathways in a migratory network: A modelling approach

Every year, migratory species undertake seasonal movements along different pathways between discrete regions and habitats. The ability to assess the relative demographic contributions of these different habitats and pathways to the species’ overall population dynamics is critical for understanding the ecology of migratory species, and also has practical applications for management and conservation. Metrics for assessing habitat contributions have been well-developed for metapopulations, but an equivalent metric is not currently available for migratory populations. Here, we develop a framework for estimating the demographic contributions of the discrete habitats and pathways used by migratory species throughout the annual cycle by estimating the per capita contribution of cohorts using these locations. Our framework accounts for seasonal movements between multiple breeding and non-breeding habitats and for both resident and migratory cohorts. We illustrate our framework using a hypothetical migratory network of four habitats, which allows us to better understand how variations in habitat quality affect per capita contributions. Results indicate that per capita contributions for any habitat or pathway are dependent on habitat-specific survival probabilities in all other areas used as part of the migratory circuit, and that contribution metrics are spatially linked (e.g. reduced survival in one habitat also decreases the contribution metric for other habitats). Our framework expands existing theory on the dynamics of spatiotemporally structured populations by developing a generalized approach to estimate the habitat- and pathway-specific contributions of species migrating between multiple breeding and multiple non-breeding habitats for a range of life histories or migratory strategies. Most importantly, it provides a means of prioritizing conservation efforts towards those migratory pathways and habitats that are most critical for the population viability of migratory species.

Ecography↗
USGS2017

Temporospatial dynamics and public health significance of bacterial flora identified on a major leatherback turtle (Dermochelys coriacea) nesting beach in the Southern Caribbean

Grande Riviere beach, on the island of Trinidad, supports the largest nesting population of leatherback turtles in the Caribbean region. Throughout the nesting season, nests are naturally disturbed by newly nesting females, resulting in egg breakage and loss of some nest viability. This environment is ideal for the growth and proliferation of microorganisms. The range of bacterial flora present in beach sand and egg shells was examined, with emphasis on bacteria that may pose a threat to public and animal health. The extent to which the bacterial load and genera on the beach changed throughout the season was also assessed. Twenty-five genera were identified, with Pseudomonas spp. found to be the most predominant environmental bacteria. Four genera identified possess zoonotic potential, while five additional genera are known to be of public and animal health significance. Distinct shifts in the density and distribution of bacteria were observed along the beach from early to peak nesting season. Shifts were seen across heavily traversed zones, thus highlighting the potential exposure threats posed to beach visitors and animals alike. Further studies aimed at speciating this population of bacteria, as well as isolating potential fungal pathogens may mitigate this threat. Identification of bacterial agents that are specifically pathogenic to leatherback turtles, turtle eggs, hatchlings and those who may interact with these animals will serve to enhance and guide efforts to better conserve this species and protect the health of all who visit this ecologically significant site.

Grande Riviere beach↗
USGS2017

Predicting wading bird and aquatic faunal responses to ecosystem restoration scenarios

In large-scale conservation decisions, scenario planning identifies key uncertainties of ecosystem function linked to ecological drivers affected by management, incorporates ecological feedbacks, and scales up to answer questions robust to alternative futures. Wetland restoration planning requires an understanding of how proposed changes in surface hydrology, water storage, and landscape connectivity affect aquatic animal composition, productivity, and food-web function. In the Florida Everglades, reintroduction of historical hydrologic patterns is expected to increase productivity of all trophic levels. Highly mobile indicator species such as wading birds integrate secondary productivity from aquatic prey (small fishes and crayfish) over the landscape. To evaluate how fish, crayfish, and wading birds may respond to alternative hydrologic restoration plans, we compared predicted small fish density, crayfish density and biomass, and wading bird occurrence for existing conditions to four restoration scenarios that varied water storage and removal of levees and canals (i.e. decompartmentalization). Densities of small fish and occurrence of wading birds are predicted to increase throughout most of the Everglades under all restoration options because of increased flows and connectivity. Full decompartmentalization goes furthest toward recreating hypothesized historical patterns of fish density by draining excess water ponded by levees and hydrating areas that are currently drier than in the past. In contrast, crayfish density declined and species composition shifted under all restoration options because of lengthened hydroperiods (i.e. time of inundation). Under full decompartmentalization, the distribution of increased prey available for wading birds shifted south, closer to historical locations of nesting activity in Everglades National Park.

Restoration Ecology↗
USGS2014

Indicators of the statuses of amphibian populations and their potential for exposure to atrazine in four midwestern U.S. conservation areas

Extensive corn production in the midwestern United States has physically eliminated or fragmented vast areas of historical amphibian habitat. Midwestern corn farmers also apply large quantities of fertilizers and herbicides, which can cause direct and indirect effects on amphibians. Limited field research regarding the statuses of midwestern amphibian populations near areas of corn production has left resource managers, conservation planners, and other stakeholders needing more information to improve conservation strategies and management plans. We repeatedly sampled amphibians in wetlands in four conservation areas along a gradient of proximity to corn production in Illinois, Iowa, Minnesota, and Wisconsin from 2002 to 2005 and estimated site occupancy. We measured frequencies of gross physical deformities in recent metamorphs and triazine concentrations in the water at breeding sites. We also measured trematode infection rates in kidneys of recently metamorphosed Lithobates pipiens collected from nine wetlands in 2003 and 2004. We detected all possible amphibian species in each study area. The amount of nearby row crops was limited in importance as a covariate for estimating site occupancy. We observed deformities in <5% of metamorphs sampled and proportions were not associated with triazine concentrations. Trematode infections were high in metamorphs from all sites we sampled, but not associated with site triazine concentrations, except perhaps for a subset of sites sampled in both years. We detected triazines more often and in higher concentrations in breeding wetlands closer to corn production. Triazine concentrations increased in floodplain wetlands as water levels rose after rainfall and were similar among lotic and lentic sites. Overall, our results suggest amphibian populations were not faring differently among these four conservation areas, regardless of their proximity to corn production, and that the ecological dynamics of atrazine exposure were complex.

Illinois;Iowa;Minnesota;Wisconsin↗
USGS2010

Mussel remains from prehistoric salt works, clarke county, Alabama

Archaeological research at salt springs in Clarke County, AL (Tombigbee River drainage), documented bivalve mollusk exploitation by late prehistoric American Indians. A total of 582 valves representing 19 species of freshwater mussels (Unionidae) and an estuarine clam (Mactridae) from the Lower Salt Works Site (ca. A.D. 900-1550) and 41 valve fragments representing 6 mussel species from the Stimpson Site (ca. A.D. 1200-1550) were documented. The Lower Salt Works fauna was dominated numerically by Fusconaia ebena and Quadrula asperata, the dominant species reported during recent local surveys. The mussel species represented are known from medium to large streams in sand and gravel habitats and include four federally protected species and other species of conservation concern in Alabama. Results offer comparative data for other archaeological and ecological studies in the region.

Southeastern Naturalist↗
USGS2020

After-hatch and hatch year Buff-breasted Sandpipers (Calidris subruficollis) can be sexed accurately using morphometric measures

Determining the sex of birds quickly in the field can help in studies of behavior and distribution, and when selecting particular sexes for deploying tracking devices or collecting samples. However, discerning males from females is difficult in species that are plumage monomorphic and have overlapping sexual-size dimorphism, as in Buff-breasted Sandpipers Calidris subruficollis . We developed three discriminant functions to sex Buff-breasted Sandpipers based on measurements of live birds captured in Brazil whose sex was confirmed with molecular techniques. We validated these discriminant functions using morphometric measures from other independent samples of known-sex live birds from wintering (Brazil), migration (Texas), and breeding (Alaska) sites. Discriminant functions derived from birds captured in Brazil accurately sexed ≥88% of the validation sample from Brazil, Texas, and Alaska. Errors in classification occurred among males on the wintering (0–5%) and breeding (8–12%) grounds, and females during migration (0–11%). Discriminant functions worked well because of the substantial sexual size dimorphism present in the species, with male traits being in general 5.2–10.4% larger than female traits. The size of morphological traits did not vary by age (after controlling for sex) for birds sampled on the wintering grounds and during migration. Our results indicate that discriminant functions can be used to sex after-hatch year (AHY) Buff-breasted Sandpipers throughout their range, and for hatch year (HY) birds during their first southbound migration and winter. Being able to accurately sex both AHY and HY birds using only morphological measurements will improve studies of the ecology and population structure of this species and enhance the application of conservation measures.

Wader Study↗
USGS2018

Fuels guide and database for intact and invaded big sagebrush (Artemisia tridentata) ecological sites—User manual

The Fuels Guide and Database (FGD) is intended to provide fuel loading and vegetation information for big sagebrush ( Artemisia tridentata ) ecological sites in the Morley Nelson Snake River Birds of Prey National Conservation Area (hereinafter the NCA) in southern Idaho. Sagebrush ecosystems in the NCA and throughout much of the Great Basin are highly influenced by non-native plants that alter successional trajectories and promote frequent wildfires, especially due to fine-fuel loadings that are highly variable over time and space. These dynamic fuel conditions can increase uncertainty when attempting to project fire risk and fire behavior. The FGD was developed to help quantify and assess these dynamic fuel loadings, and it provides access to fuels data across a range of conditions, from relatively intact sagebrush-bunchgrass communities to degraded communities dominated by nonnative annual grasses and forbs. The FGD can be queried for a variety of environmental conditions, and it provides tabular data, reports, and photographic records of fuels based on user queries. This report describes the FGD, including overall data content and data-collection methods, as well as instructions for installing and using the database.

Data Series↗
USGS2025

Sprague’s Pipits (Anthus spragueii) occupying high-elevation intermontane valley habitat throughout the breeding season in southwest Montana

Sprague's Pipit ( Anthus spragueii ) is an imperiled bird species that breeds in grasslands of the northern Great Plains of North America. While conducting avian surveys in the Centennial Valley, Beaverhead County, southwest Montana, during spring and summer 2023, we detected approximately 10 male Sprague's Pipits performing aerial displays. These represent the first detailed observations of Sprague's Pipits in Beaverhead County, Montana, and the first confirmed observations of territorial displays therein. Subsequent detections included multiple adults, one of which was seen flying with food in its bill. We hypothesize that these observations represent a small but previously undescribed breeding population occurring above 2000 m elevation, which is higher than elevations at which this species is generally thought to breed. Our discovery also expands the known breeding habitat of this species to include intermontane valley bottoms, raising questions of whether the historical range included this habitat prior to its large-scale modifications across western North America and contemporary global change. These additions to our understanding of Sprague's Pipit ecology may be important for both land managers in the region and conservation efforts for this species. The evidence described here, of a breeding population of Sprague's Pipits in the Centennial Valley, Montana, may warrant further investigations in intermontane valleys throughout the region to better understand the breeding extent and the management actions needed to conserve this species and its habitat.

Montana↗
USGS2023

Dive characteristics of Common Loons wintering in the Gulf of Mexico and off the southern U.S. Atlantic coast

Common Loons ( Gavia immer ) winter primarily in marine coastal areas and utilize a forage base that is poorly defined, especially for offshore areas. Information on dive activity is needed for describing foraging strategies and for inferring prey distribution. Archival geolocator tags were used to determine the wintering locations and dive characteristics of adult Common Loons captured and marked on breeding lakes in Minnesota, Wisconsin, and the Upper Peninsula of Michigan. Among loons that completed fall migration, most wintered in the Gulf of Mexico, with smaller proportions wintering off the southern Atlantic Coast or impoundments in the southeastern United States. Adult Common Loons tended to occupy offshore areas of the Gulf of Mexico and the Atlantic Ocean and, on average, spent about 60% of daylight hours foraging. Dive depths were as deep as 50 m (Gulf of Mexico) and dive characteristics indicated that loons were primarily foraging on benthic prey. Total dive duration, time at maximum depth, and post-dive surface intervals increased with dive depths among wintering Common Loons. Our results are expected to contribute to the understanding of the wintering ecology of Common Loons and be useful in informing regional and national conservation planning efforts.

Journal of Field Ornithology↗
USGS1999

Snake species of the world: A taxonomic and geographic reference. v. 1

Given the absence of a current source on snake diversity and nomenclature and the expressed global need to understand better the diversity of our biota, we think that a catalogue of the world snake fauna complete with synonymies at the familial, generic, and specific levels is essential. We provide that here beginning with publication of the first volume. This compendium will facilitate comparative studies on the ecology, genetics, and behavior of snakes and, we hope, contribute to their conservation. At the very least, this work, when completed, will provide a readily available reference to the current taxonomic statuses and geographic distributions of snakes on a global scale. No comprehensive, up-to-date catalogue of snake species exists, and it is obvious that a detailed and inclusive treatment is long overdue. Snake Species of the World provides a comprehensive treatment of 31 families, 450 genera, and more than 2500 species of living snakes. The magnitude of the compilation requires publication in several volumes. This volume, the first of three, covers 682 species. A primary goal of this synthesis is to provide interested readers with a means for tracking scientific names that have been applied to a snake and determining the currently accepted name of that species. A secondary goal is to alert those interested in snakes as research subjects that in general many species are poorly known, that some have limited distributions, and that several are characterized by taxonomic problems.

Book↗