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At least 847 records · Page 47Linked to original sources
USGS2006

Implications of mitochondrial DNA polyphyly in two ecologically undifferentiated but morphologically distinct migratory birds, the masked and white-browed woodswallows Artamus spp. of inland Australia

The white-browed woodswallow Artamus superciliosus and masked woodswallow A. personatus (Passeriformes: Artamidae) are members of Australia's diverse arid- and semi-arid zone avifauna. Widely sympatric and among Australia's relatively few obligate long-distance temperate-tropical migrants, the two are well differentiated morphologically but not ecologically and vocally. They are pair breeders unlike other Artamus species, which are at least facultative cooperative breeders. For these reasons they are an excellent case in which to use molecular data in integrative study of their evolution from ecological and biogeographical perspectives. We used mitochondrial DNA (mtDNA) to test whether they are each other's closest relatives, whether they evolved migration independently, whether they have molecular signatures of population expansions like some other Australian arid zone birds, and to estimate the timing of any inferred population expansions. Their mtDNAs are monophyletic with respect to other species of Artamus but polyphyletic with respect to each other. The two species appear not to have evolved migration independently of each other but their morphological and mtDNA evolution have been strongly decoupled. Some level of hybridization and introgression cannot be dismissed outright as being involved in their mtDNA polyphyly but incomplete sorting of their most recent common ancestor's mtDNA is a simpler explanation consistent with their ecology. Bayesian phylogenetic inference and analyses of diversity within the two species (n=77) with conventional diversity statistics, statistical parsimony, and tests for population expansion vs stability (Tajima's D , Fu's Fs and Ramos-Onsin and Rozas's R 2 ) all favour recent population increases. However, a non-starlike network suggests expansion(s) relatively early in the Pleistocene. Repeated population bottlenecks corresponding with multiple peaks of Pleistocene aridity could explain our findings, which add a new dimension to accruing data on the effects of Pleistocene aridity on the Australian biota.

Journal of Avian Biology↗
USGS2011

Lithosphere-asthenosphere interaction beneath the western United States from the joint inversion of body-wave traveltimes and surface-wave phase velocities

The relation between the complex geological history of the western margin of the North American plate and the processes in the mantle is still not fully documented and understood. Several pre-USArray local seismic studies showed how the characteristics of key geological features such as the Colorado Plateau and the Yellowstone Snake River Plains are linked to their deep mantle structure. Recent body-wave models based on the deployment of the high density, large aperture USArray have provided far more details on the mantle structure while surface-wave tomography (ballistic waves and noise correlations) informs us on the shallow structure. Here we combine constraints from these two data sets to image and study the link between the geology of the western United States, the shallow structure of the Earth and the convective processes in mantle. Our multiphase DNA10-S model provides new constraints on the extent of the Archean lithosphere imaged as a large, deeply rooted fast body that encompasses the stable Great Plains and a large portion of the Northern and Central Rocky Mountains. Widespread slow anomalies are found in the lower crust and upper mantle, suggesting that low-density rocks isostatically sustain part of the high topography of the western United States. The Yellowstone anomaly is imaged as a large slow body rising from the lower mantle, intruding the overlying lithosphere and controlling locally the seismicity and the topography. The large E-W extent of the USArray used in this study allows imaging the 'slab graveyard', a sequence of Farallon fragments aligned with the currently subducting Juan de Fuca Slab, north of the Mendocino Triple Junction. The lithospheric root of the Colorado Plateau has apparently been weakened and partly removed through dripping. The distribution of the slower regions around the Colorado Plateau and other rigid blocks follows closely the trend of Cenozoic volcanic fields and ancient lithospheric sutures, suggesting that the later exert a control on the locus of magmato-tectonic activity today. The DNA velocity models are available for download and slicing at http://dna.berkeley.edu. ?? 2011 The Authors Geophysical Journal International ?? 2011 RAS.

Geophysical Journal International↗
USGS2006

Effects of temperature on biochemical reactions and drug resistance of virulent and avirulent Aeromonas salmonicida

Incubation temperatures of 11°, 18° and 28° did not substantially affect biochemical reactions of either virulent or avirulent forms of Aeromonas salmonicida subspecies salmonicida. The only change observed, amygdalin fermentation, was positive at 11° and 18° but negative at 28°C. Several isolates utilized sucrose, a characteristic not normally recognized for A. salmonicida subspecies salmonicida. Antimicrobial susceptibility screening indicated resistance to novobiocin increased at the higher incubation temperatures. Standardized drug sensitivity testing procedures and precise zone diameter interpretive standards for bacterial fish pathogens are needed.

Journal of Fish Diseases↗
USGS2006

Tolerance of lake trout, Salvelinus namaycush (Walbaum), sac fry to dissolved gas supersaturation

The tolerance of sac fry of lake trout, Salvelinus namaycush (Walbaum), to the acute effects of gas supersaturation, from hatching to swim-up, was tested using six gas levels, ranging from ΔP 8 to 148. Although many fish were moribund by the time the yolk was nearly absorbed, mortality during the 40-day study was negligible; survival to swim-up was 96–99%, including 99% survival at ΔP 148. Of fish examined at ΔP 42, 40% showed bubble formation around the rim of the eye. Signs of trauma were greatest at ΔP 119 and 148, and included intestinal bubbles, a distended abdomen, and bubbles around the eye, in the mouth and in jaw tissues.

Journal of Fish Diseases↗
USGS2007

Quantifying fluid and bed dynamics for characterizing benthic physical habitat in large rivers

Sturgeon use benthic habitats in and adjacent to main channels where environmental conditions can include bedload sediment transport and high near-bed flow velocities. Bed velocity measurements obtained with acoustic Doppler instruments provide a means to assess the concentration and velocity of sediment moving near the streambed, and are thus indicative of the bedload sediment transport rate, the near-bed flow velocity, and the stability of the substrate. Acoustic assessments of benthic conditions in the Missouri River were conducted at scales ranging from the stream reach to individual bedforms. Reach-scale results show that spatially-averaged bed velocities in excess of 0.5 m s-1 frequently occur in the navigation channel. At the local scale, bed velocities are highest near bedform crests, and lowest in the troughs. Low-velocity zones can persist in areas with extremely high mean bed velocities. Use of these low-velocity zones may allow sturgeon to make use of portions of the channel where the average conditions near the bed are severe. To obtain bed velocity measurements of the highest possible quality, it is necessary to extract bottom-track and GPS velocity information from the raw ADCP data files on a ping-by-ping basis. However, bed velocity measured from a point can also be estimated using a simplified method that is more easily implemented in the context of routine monitoring. The method requires only the transect distance and direction data displayed in standard ADCP data-logging software. Bed velocity estimates obtained using this method are usually within 5-10% of estimates obtained from ping-by-ping processing. ?? 2007 Blackwell Verlag.

Journal of Applied Ichthyology↗
USGS2007

Anemia and mechanism of erythrocyte destruction in ducks with acute Leucocytozoon infections

In the anemia which accompanies infection by Leucocytozoon simondi in Pekin ducks there was a far greater loss of erythrocytes than could be accounted for as a result of direct physical rupture by the parasite. Erythrocyte loss began at the same time the 1st parasites appeared in the blood and was severest just prior to maximum parasitemia. Blood replacement and parasite loss occurred simultaneously. Examination of the spleen and bone marrow revealed that erythrophagocytosis was not the cause of anemia as reported for infections of Plasmodium, Babesia and Anaplasma . An anti-erythrocyte (A-E) factor was found in the serum of acutely infected ducks which agglutinated and hemolyzed normal untreated duck erythrocytes as well as infected cells. This A-E factor appeared when the 1st red cell loss was detected and reached its maximum titer just prior to the greatest red cell loss. Titers of the A-E factor were determined using normal uninfected erythrocytes at temperatures between 4 and 42 C. Cells agglutinated below 25 C and hemolyzed at 37 and 42 C. These results indicated that the A-E factor could be responsible for loss of cells other than those which were infected and could thus produce an excess loss of red cells.

Journal of Protozoology↗
USGS2007

Passive immunization of pigeons against trichomoniasis

Nonimmune homing pigeons Columba livia were infected with the Jones' Barn strain of Trichomonas gallinae and subsequently transfused with plasma from acute or chronically infected pigeons harboring one of 3 different strains of T. gallinae. The transfusions were either a single 2 ml dose given one day after inoculation or three 1 ml doses given 0, 5, and 10 days after inoculation. Plasma from pigeons harboring any of the 3 strains was capable of passively immunizing nonimmune birds. All birds which were immunized with plasma from infected pigeons survived until killed at the end of the test period and no visceral lesions were found on necropsy but trichomonads were present in the oropharynx. All controls (untreated or transfused with normal plasma) died of visceral trichomoniasis. Immune plasma produced some lysis of trichomonads in vitro, and inhibition of motility and vacuolization occurred in some of the non-lysed organisms. The overall lytic activity in vitro affected less than 10% of the suspended trichomonads.

Journal of Protozoology↗
USGS2008

Predators of Dusky Canada Goose goslings and the effect of transmitters on gosling survival

The population of Dusky Canada Geese (Branta canadensis occidentalis) has been in long-term decline, likely due to reduced breeding productivity. To identify causes of mortality, we monitored goslings marked with radio transmitters on the western Copper River Delta, Alaska, from 1997 to 1999. Almost all gosling mortality (96%; 81 of 84) was due to predation, with mink (Mustela vison) and Bald Eagles (Haliaeetus leucocephalus) the most important predators. Bald Eagles are also major nest predators and, thus, appear to play a key role in limiting the breeding productivity of Dusky Canada Geese. Daily survival rate for goslings to 28 d of age was lower (0.011; 95% CI 0.002-0.024) for those with transmitters than for those without, but did not differ for older goslings (29-45 d). Although finer resolution in the timing of the transmitter effect within the first 28 d was not possible, we found that, by limiting our sample to goslings that survived until after 2-3 d posthatching, support for a transmitter effect was much reduced. Younger, smaller birds are inherently more vulnerable than older birds to transmitter effects. In addition, the process of radio-marking may have delayed the departure of goslings from nests and increased their risk of mortality shortly after hatching. Although radio transmitters may often be the only practical means for determining causes of mortality for young waterfowl, we suggest caution in using transmitters because of their potential negative effects, particularly during the first few days after hatching. ?? 2008 Association of Field Ornithologists.

Journal of Field Ornithology↗
USGS2007

Contributions of rainfall to constituent loads in storm runoff from urban catchments

Rainfall is a significant source of some constituents, particularly nitrogen species, in storm runoff from urban catchments. Median contributions of rainfall to storm runoff loads of 12 constituents from 31 urban catchments, representing eight geographic locations within the United States, ranged from 2 percent for suspended solids to 74 percent for total nitrite plus nitrate nitrogen. The median contribution of total nitrogen in rainfall to runoff loads was 41 percent. Median contributions of total-recoverable lead in rainfall to runoff loads varied by as much as an order of magnitude between catchments in the same geographic location. This indicates that average estimates of rainfall contributions to constituent loading in storm runoff may not be suitable in studies requiring accurate constituent mass-balance computations.

Journal of the American Water Resources Associatio↗
USGS2007

Altered streamflow and sediment entrainment in the Gunnison Gorge

The Gunnison River in the Gunnison Gorge is a canyon river where upstream dams regulate mainstem discharge but do not affect debris-flow sediment supply from tributaries entering below the reservoirs. Regulation since 1966 has altered flood frequency, streambed mobility, and fluvial geomorphology creating potential resource-management issues. The duration of moderate streamflows between 32.3 and 85.0 m3/s has increased threefold since 1966. This, along with flood-peak attenuation, has facilitated fine-sediment deposition and vegetation encroachment on stream banks. The Shields equation and on-site channel geometry and bed-material measurements were used to assess changes in sediment entrainment in four alluvial reaches. Sand and fine gravel are transported through riffle/pool reaches at most discharges, but the cobbles and boulders composing the streambed in many reaches now are infrequently entrained. Periodic debris flows add coarse sediment to rapids and can increase pool elevation and the streambed area affected by backwater and fine-sediment accumulation. Debris-flow supplied boulders accumulate on fans and in rapids and constrict the channel until reworked by larger floods. The response to streamflow-regime changes in the Gunnison Gorge could serve as an analog for alluvial reaches in other regulated canyon rivers.

Journal of the American Water Resources Associatio↗
USGS2007

Regression models for estimating herbicide concentrations in U.S. streams from watershed characteristics

Regression models were developed for estimating stream concentrations of the herbicides alachlor, atrazine, cyanazine, metolachlor, and trifluralin from use-intensity data and watershed characteristics. Concentrations were determined from samples collected from 45 streams throughout the United States during 1993 to 1995 as part of the U.S. Geological Survey's National Water-Quality Assessment (NAWQA). Separate regression models were developed for each of six percentiles (10th, 25th, 50th, 75th, 90th, 95th) of the annual distribution of stream concentrations and for the annual time-weighted mean concentration. Estimates for the individual percentiles can be combined to provide an estimate of the annual distribution of concentrations for a given stream. Agricultural use of the herbicide in the watershed was a significant predictor in nearly all of the models. Several hydrologic and soil parameters also were useful in explaining the variability in concentrations of herbicides among the streams. Most of the regression models developed for estimation of concentration percentiles and annual mean concentrations accounted for 50 percent to 90 percent of the variability among streams. Predicted concentrations were nearly always within an order of magnitude of the measured concentrations for the model-development streams, and predicted concentration distributions reasonably matched the actual distributions in most cases. Results from application of the models to streams not included in the model development data set are encouraging, but further validation of the regression approach described in this paper is needed.

Journal of the American Water Resources Associatio↗
USGS2007

Atrazine and metolachlor occurrence in shallow ground water of the United States, 1993 to 1995: Relations to explanatory factors

Since 1991, the U.S. Geological Survey has been conducting the National Water Quality Assessment (NAWQA) Program to determine the quality of the Nation's water resources. In an effort to obtain a better understanding of why pesticides are found in shallow ground water on a national scale, a set of factors likely to affect the fate and transport of two herbicides in the subsurface were examined. Atrazine and metolachlor were selected for this discussion because they were among the most frequently detected pesticides in ground water during the first phase of the NAWQA Program (1993 to 1995), and each was the most frequently detected compound in its chemical class (triazines and acetanilides, respectively). The factors that most strongly correlated with the frequencies of atrazine detection in shallow ground-water networks were those that provided either: (1) an indication of the potential susceptibility of ground water to atrazine contamination, or (2) an indication of relative ground-water age. The factors most closely related to the frequencies of metolachlor detection in ground water, however, were those that estimated or indicated the intensity of the agricultural use of metolachlor. This difference is probably the result of detailed use estimates for these compounds being available only for agricultural settings. While atrazine use is relatively extensive in nonagricultural settings, in addition to its widespread agricultural use, metolachlor is used almost exclusively for agricultural purposes. As a result, estimates of agricultural applications provide a less reliable indication of total chemical use for atrazine than for metolachlor. A multivariate analysis demonstrated that the factors of interest explained about 50 percent of the variance in atrazine and metolachlor detection frequencies among the NAWQA land-use studies examined. The inclusion of other factors related to pesticide fate and transport in ground water, or improvements in the quality and accuracy of the data employed for the factors examined, may help explain more of the remaining variance in the frequencies of atrazine and metolachlor detection.

Journal of the American Water Resources Associatio↗
USGS2007

The role of headwater streams in downstream water quality

Knowledge of headwater influences on the water-quality and flow conditions of downstream waters is essential to water-resource management at all governmental levels; this includes recent court decisions on the jurisdiction of the Federal Clean Water Act (CWA) over upland areas that contribute to larger downstream water bodies. We review current watershed research and use a water-quality model to investigate headwater influences on downstream receiving waters. Our evaluations demonstrate the intrinsic connections of headwaters to landscape processes and downstream waters through their influence on the supply, transport, and fate of water and solutes in watersheds. Hydrological processes in headwater catchments control the recharge of subsurface water stores, flow paths, and residence times of water throughout landscapes. The dynamic coupling of hydrological and biogeochemical processes in upland streams further controls the chemical form, timing, and longitudinal distances of solute transport to downstream waters. We apply the spatially explicit, mass-balance watershed model SPARROW to consider transport and transformations of water and nutrients throughout stream networks in the northeastern United States. We simulate fluxes of nitrogen, a primary nutrient that is a water-quality concern for acidification of streams and lakes and eutrophication of coastal waters, and refine the model structure to include literature observations of nitrogen removal in streams and lakes. We quantify nitrogen transport from headwaters to downstream navigable waters, where headwaters are defined within the model as first-order, perennial streams that include flow and nitrogen contributions from smaller, intermittent and ephemeral streams. We find that first-order headwaters contribute approximately 70% of the mean-annual water volume and 65% of the nitrogen flux in second-order streams. Their contributions to mean water volume and nitrogen flux decline only marginally to about 55% and 40% in fourth- and higher-order rivers that include navigable waters and their tributaries. These results underscore the profound influence that headwater areas have on shaping downstream water quantity and water quality. The results have relevance to water-resource management and regulatory decisions and potentially broaden understanding of the spatial extent of Federal CWA jurisdiction in U.S. waters. ?? 2007 American Water Resources Association.

Journal of the American Water Resources Associatio↗
USGS2008

Modeling variability and trends in pesticide concentrations in streams

A parametric regression model was developed for assessing the variability and long-term trends in pesticide concentrations in streams. The dependent variable is the logarithm of pesticide concentration and the explanatory variables are a seasonal wave, which represents the seasonal variability of concentration in response to seasonal application rates; a streamflow anomaly, which is the deviation of concurrent daily streamflow from average conditions for the previous 30 days; and a trend, which represents long-term (inter-annual) changes in concentration. Application of the model to selected herbicides and insecticides in four diverse streams indicated the model is robust with respect to pesticide type, stream location, and the degree of censoring (proportion of nondetections). An automatic model fitting and selection procedure for the seasonal wave and trend components was found to perform well for the datasets analyzed. Artificial censoring scenarios were used in a Monte Carlo simulation analysis to show that the fitted trends were unbiased and the approximate p-values were accurate for as few as 10 uncensored concentrations during a three-year period, assuming a sampling frequency of 15 samples per year. Trend estimates for the full model were compared with a model without the streamflow anomaly and a model in which the seasonality was modeled using standard trigonometric functions, rather than seasonal application rates. Exclusion of the streamflow anomaly resulted in substantial increases in the mean-squared error and decreases in power for detecting trends. Incorrectly modeling the seasonal structure of the concentration data resulted in substantial estimation bias and moderate increases in mean-squared error and decreases in power. ?? 2008 American Water Resources Association.

Journal of the American Water Resources Associatio↗
USGS2016

Reaction softening by dissolution–precipitation creep in a retrograde greenschist facies ductile shear zone, New Hampshire, USA

We describe strain localization by a mixed process of reaction and microstructural softening in a lower greenschist facies ductile fault zone that transposes and replaces middle to upper amphibolite facies fabrics and mineral assemblages in the host schist of the Littleton Formation near Claremont, New Hampshire. Here, Na-poor muscovite and chlorite progressively replace first staurolite, then garnet, and finally biotite porphyroblasts as the core of the fault zone is approached. Across the transect, higher grade fabric-forming Na-rich muscovite is also progressively replaced by fabric-forming Na-poor muscovite. The mineralogy of the new phyllonitic fault-rock produced is dominated by Na-poor muscovite and chlorite together with late albite porphyroblasts. The replacement of the amphibolite facies porphyroblasts by muscovite and chlorite is pseudomorphic in some samples and shows that the chemical metastability of the porphyroblasts is sufficient to drive replacement. In contrast, element mapping shows that fabric-forming Na-rich muscovite is selectively replaced at high-strain microstructural sites, indicating that strain energy played an important role in activating the dissolution of the compositionally metastable muscovite. The replacement of strong, high-grade porphyroblasts by weaker Na-poor muscovite and chlorite constitutes reaction softening. The crystallization of parallel and contiguous mica in the retrograde foliation at the expense of the earlier and locally crenulated Na-rich muscovite-defined foliation destroys not only the metastable high-grade mineralogy, but also its stronger geometry. This process constitutes both reaction and microstructural softening. The deformation mechanism here was thus one of dissolution–precipitation creep, activated at considerably lower stresses than might be predicted in quartzofeldspathic rocks at the same lower greenschist facies conditions.

New Hampshire↗