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USGS2020

Dilution and propagation of provenance trends in sand and mud: Geochemistry and detrital zircon geochronology of modern sediment from central California (U.S.A.)

Integrated, multi-method provenance studies of siliciclastic sedimentary deposits are increasingly used to reconstruct the history of source-to-sink transport, paleogeography, and tectonics. Invariably, analysis of large-scale depositional systems must confront issues regarding how to best sample the system and adequately cope with the details of sediment mixing. Potential biases including variations in grain size, sediment flux, and zircon concentration may cause provenance tracking tools to misrepresent the contributions of source-areas that contribute to large drainage networks. We have acquired U-Pb detrital zircon data from modern sand and whole rock geochemistry from mud sampled from the Sacramento-San Joaquin drainage of central California to elucidate conditions that can skew provenance trends along the course of a major river system. This drainage network is fed by headwaters that tap the Mesozoic pluton-dominated southern Sierra Nevada, the Paleozoic-Mesozoic wallrock and volcanic-dominated northern Sierra Nevada, the ultramafic-dominated eastern Klamath Mountains, and the intermediate to mafic Cascades volcanic arc. Analysis of the results indicates that detrital zircon provenance trends effectively record source variations for the southern, granite-dominated portion of the drainage network where contrasts in lithology and inferred zircon fertility are relatively minor. In these circumstances, mixture modeling of U-Pb detrital zircon data calibrated with a measure of zircon fertility approximates relative sediment flux contributed by individual drainages. Alternatively, in the northern parts of the system, source regions underlain by ultramafic and /or volcanic rocks are poorly represented, or entirely missing, in down-stream detrital zircon records. In some cases, mud geochemistry data more faithfully represents sediment provenance trends. Sampling performed at the confluence of the Sacramento, American, Mokolumne, and San Joaquin rivers within the Sacramento Delta region yields a detrital zircon age distribution that is indistinguishable from that of an independently established database of Sierra Nevada batholith crystallization ages. However, when the combined river flows along a recently established passage to the Pacific through the San Francisco Bay region, dredged sediment is found to be significantly contaminated by locally eroded material from the Franciscan Complex and other rocks that crop out within the Coast Ranges. Large variation of Zr concentrations measured throughout the Bay area document that significant hydrodynamic fractionation impacts sediment delivery through this segment of the system. The more Sierra Nevada-like detrital zircon age distribution yielded by a piston-core sample from the continental slope may be explained by either early-stage unroofing of the Coast Ranges or more efficient sand delivery from the delta to the Pacific by a free flowing river driven by a low stand in sea level.

California↗

USGS2004

The Cottage Lake aeromagnetic lineament: A possible onshore extension of the southern Whidbey Island fault, Washington

The northwest-striking southern Whidbey Island fault zone (SWIF) was mapped previously using borehole data and potential-field anomalies on Whidbey Island and marine seismic surveys beneath surrounding waterways. Abrupt subsidence at a coastal marsh on south-central Whidbey Island suggests that the SWIF experienced a MW 6.5 to 7.0 earthquake about 3000 years ago. Southeast of Whidbey Island, a hypothesized southeastward projection of the SWIF would make landfall between the cities of Seattle and Everett. As part of systematic, ongoing studies by the U.S. Geological Survey, University of Washington, and other earth science organizations to evaluate potentially active faults and other earth hazards throughout the Puget Lowland, we test this hypothesis using aeromagnetic, lidar, and borehole data. Linear, northwest-striking magnetic anomalies traversing the mainland region project southeastward toward the communities of Woodinville and Maltby, Washington. All of these magnetic anomalies are low in amplitude and best illuminated in residual magnetic fields. The most prominent of the residual magnetic anomalies extends at least 16 km, lies approximately on strike with the SWIF on Whidbey Island, and passes near Crystal and Cottage Lakes, about 27 km southeast of downtown Everett. In places, this magnetic anomaly is associated with topographic lineaments, but spectral analysis indicates that the source of the anomaly extends to depths greater than 2 km and cannot be explained entirely by topographic effects. The Alderwood #1 oil exploration well located on strike with the Cottage Lake aeromagnetic lineament shows evidence of deformation over a total depth range of 3000 m; some beds within this interval exhibit intense fracturing and shearing, although deformation within the well can only be constrained as post-early Oligocene and pre-Pleistocene. Boreholes acquired as part of a wastewater tunnel project show evidence of soil disturbance at locations where some topographic and aeromagnetic lineaments cross the tunnel alignment. Some of the disturbance is likely tectonic in origin, although other explanations are possible. Some of the soil disturbance demonstrably predates the 15-13 ka Fraser glaciation of the Puget Lowland; other samples have inconclusive ages and may be younger. Subtle scarps in Pleistocene surfaces are visible on high-resolution lidar topography at a number of locations along the Cottage Lake aeromagnetic lineament. Collectively, the scarps are parallel to the trend of the aeromagnetic lineament and extend a total distance of 18 km. In the field, scarps exhibit 1 to 5 m of north-side-up offset. The scarps provide targets for future paleoseismic trenching studies to test the hypothesis that they have a tectonic origin.

Washington↗

USGS2016

Disease prevalence and snail predation associated with swell-generated damage on the threatened coral, Acropora palmata (Lamarck)

Disturbances such as tropical storms cause coral mortality and reduce coral cover as a direct result of physical damage. Storms can be one of the most important disturbances in coral reef ecosystems, and it is crucial to understand their long-term impacts on coral populations. The primary objective of this study was to determine trends in disease prevalence and snail predation on damaged and undamaged colonies of the threatened coral species, Acropora palmata, following an episode of heavy ocean swells in the US Virgin Islands (USVI). At three sites on St. Thomas and St. John, colonies of A. palmata were surveyed monthly over 1 year following a series of large swells in March 2008 that fragmented 30–93% of colonies on monitored reefs. Post-disturbance surveys conducted from April 2008 through March 2009 showed that swell-generated damage to A. palmata caused negative indirect effects that compounded the initial direct effects of physical disturbance. During the 12 months after the swell event, white pox disease prevalence was 41% higher for colonies that sustained damage from the swells than for undamaged colonies (df = 207, p = 0.01) with greatest differences in disease prevalence occurring during warm water months. In addition, the corallivorous snail, Coralliophila abbreviata, was 46% more abundant on damaged corals than undamaged corals during the 12 months after the swell event (df = 207, p = 0.006).

Frontiers in Marine Science↗

USGS2003

USGS Alaska Tissue Archival Projects: An update on FY02 activities

The banking of environmental specimens under cryogenic conditions for future retrospective analysis has been recognized for many years as an important part of environmental monitoring programs. Since 1987, the Alaska Marine Mammal Tissue Archival Project (AMMTAP) has been collecting tissue samples from marine mammals for archival in the National Biomonitoring Specimen Bank (NBSB) at the National Institute of Standards and Technology (NIST) in Gaithersburg, Maryland, USA. The USGS, Alaska Biological Science Center (ABSC), the NOAA Fisheries, Office of Protected Resources (NMFS), and the NIST conduct this partnership project, which began under the Mineral Management Service (MMS) Outer Continental Shelf Environmental Assessment Program. MMS remains the primary client agency for the AMMTAP providing programmatic guidance and review. The purpose of the project is to collect tissue samples from Alaska marine mammals and to store these specimens under the best conditions so that they can be analyzed for environmental contaminants and other constituents. A substantial part of the sample collection is from Arctic species and, since most of the animals sampled are from Alaska Native subsistence harvests, the project relies on cooperation and collaboration with several Alaska Native organizations and local governmental agencies. Although a substantial amount of recent research has been conducted on contaminants in Alaskan marine mammals, few data exists on colonial seabirds nesting in Alaska. Like marine mammals, seabirds are an important group of upper trophic level marine organisms with a potential for accumulating lipophilic contaminants and are identified by MMS as species of interest for monitoring activities. More than 95% of the seabirds breeding in the continental United States nest at colonies in the Bering and Chukchi seas and Gulf of Alaska (see USFWS 1992). Realizing the value of colonial seabirds in environmental monitoring and the lack of recent data from Alaskan seabird colonies, the U.S. Fish and Wildlife Service Alaska Maritime National Wildlife Refuge (USFWS-AMNWR), the U.S. Geological Survey Biological Resources Division (USGS-BRD), and the National Institute of Standards and Technology (NIST) initiated the Seabird Tissue Archival and Monitoring Project (STAMP) in 1998. The project was designed as a 100-year-long program to monitor long-term trends in environmental quality by collecting eggs at nesting colonies using standardized protocols, banking the egg contents under conditions that ensure chemical stability during long-term (decadal) storage, and analyzing subsamples of the stored material to establish baseline levels for persistent bioaccumulative contaminants (e.g., chlorinated pesticides, PCBs, mercury).

Conference Paper↗

USGS2008

Methane hydrate formation in turbidite sediments of northern Cascadia, IODP Expedition 311

Expedition 311 of the Integrated Ocean Drilling Program (IODP) to northern Cascadia recovered gas-hydrate bearing sediments along a SW-NE transect from the first ridge of the accretionary margin to the eastward limit of gas-hydrate stability. In this study we contrast the gas gas-hydrate distribution from two sites drilled ~ 8??km apart in different tectonic settings. At Site U1325, drilled on a depositional basin with nearly horizontal sedimentary sequences, the gas-hydrate distribution shows a trend of increasing saturation toward the base of gas-hydrate stability, consistent with several model simulations in the literature. Site U1326 was drilled on an uplifted ridge characterized by faulting, which has likely experienced some mass wasting events. Here the gas hydrate does not show a clear depth-distribution trend, the highest gas-hydrate saturation occurs well within the gas-hydrate stability zone at the shallow depth of ~ 49??mbsf. Sediments at both sites are characterized by abundant coarse-grained (sand) layers up to 23??cm in thickness, and are interspaced within fine-grained (clay and silty clay) detrital sediments. The gas-hydrate distribution is punctuated by localized depth intervals of high gas-hydrate saturation, which preferentially occur in the coarse-grained horizons and occupy up to 60% of the pore space at Site U1325 and > 80% at Site U1326. Detailed analyses of contiguous samples of different lithologies show that when enough methane is present, about 90% of the variance in gas-hydrate saturation can be explained by the sand (> 63????m) content of the sediments. The variability in gas-hydrate occupancy of sandy horizons at Site U1326 reflects an insufficient methane supply to the sediment section between 190 and 245??mbsf. ?? 2008 Elsevier B.V.

Earth and Planetary Science Letters↗

USGS2011

Global biodiversity: Indicators of recent declines

In 2002, world leaders committed, through the Convention on Biological Diversity, to achieve a significant reduction in the rate of biodiversity loss by 2010. We compiled 31 indicators to report on progress toward this target. Most indicators of the state of biodiversity (covering species’ population trends, extinction risk, habitat extent and condition, and community composition) showed declines, with no significant recent reductions in rate, whereas indicators of pressures on biodiversity (including resource consumption, invasive alien species, nitrogen pollution, overexploitation, and climate change impacts) showed increases. Despite some local successes and increasing responses (including extent and biodiversity coverage of protected areas, sustainable forest management, policy responses to invasive alien species, and biodiversity-related aid), the rate of biodiversity loss does not appear to be slowing.

Science↗

USGS2021

Maternal transfer of polychlorinated biphenyls in Pacific sand lance (Ammodytes personatus), Puget Sound, Washington

We measured polychlorinated biphenyls (PCBs) in multiple age and size classes of Pacific sand lance ( Ammodytes personatus ), including eggs, young-of-the year, and adults to evaluate maternal transfer as a pathway for contaminant uptake and to add to the limited information on the occurrence of PCBs in sand lance in Puget Sound. Sampling was replicated at an urban embayment (Eagle Harbor) and a state park along an open shoreline (Clayton Beach), during spring and fall. Lipid-normalized concentrations of PCBs in sand lance at Eagle Harbor were 5–11 times higher than PCB concentrations in comparable samples at Clayton Beach. This was true for every life stage and size class of sand lance, including eggs removed from females. The same trend was observed in environmental samples. In Eagle Harbor, PCB concentrations in unfiltered water (0.19 ng/L), sieved (<63 μm) nearshore bed sediments (0.78 ng/g dw) and suspended particulate matter (1.69 ng/g dw) were 2–3 times higher than equivalent samples from near Clayton Beach. Sand lance collected in the fall (buried in sediment during presumed winter dormancy) had lower lipid content and up to four times higher PCB concentrations than comparably sized fish collected in the spring (by beach seine). Lipid content was 5–8% in spring fish and was reduced in fall fish (1–3%). Male sand lance had higher PCB concentrations than comparable females. All egg samples contained PCBs, and the lipid normalized egg/female concentration ratios were close to 1 (0.87–0.96), confirming that maternal transfer of PCBs occurred, resulting in sand lance eggs and early life stages being contaminated with PCBs even before they are exposed to exogenous sources. These life stages are prey for an even wider range of species than consume adult sand lance, creating additional exposure pathways for biota and increasing the challenges for mitigation of PCBs in the food web.

Washington↗

USGS2003

Elemental chemistry of four lichen species from the Apostle Islands, Wisconsin, 1987, 1995 and 2001

Four lichen species sampled three times over a 15-year time span at four of the Apostle Islands, Wisconsin were analyzed for 16 chemical elements in order to determine time trends and spatial patterns. Factor analyses of the data revealed that elements associated with soils (Al, Cr, Fe, Na, Ni and S) have increased over the study period, while nutrient and pollutant elements (Cu, K, P, Pb and Zn) have decreased. Four other elements (Ca, Cd, Mg and Mn) were unchanged over time. Cladina rangiferina , a terricolous species, contained the lowest concentrations of all elements, while the corticolous species Evernia mesomorpha was highest in soil elements, Hypogymnia physodes was highest in Ca, Cd, Mg and Mn, and Parmelia sulcata was highest in the nutritional elements. Lichens on islands within 3–4 km of the mainland were highest in soil elements, which decreased with distance from the mainland. Elements that were 18–43% greater on the nearest islands were significantly different between near and far islands. Eight elements (Al, Ca, Cd, K, Mg, Mn, P and S) exceeded enrichment levels for Hypogymnia physodes , suggesting possible contamination problems for this species. Although Pb has decreased significantly over the time period, other elements have increased in the lichens while decreasing in the atmosphere, suggesting that accumulation in the environment is continuing.

Wisconsin↗

USGS2010

Geologic controls on the recent evolution of oyster reefs in Apalachicola Bay and St. George Sound, Florida

Apalachicola Bay and St. George Sound contain the largest oyster fishery in Florida, and the growth and distribution of the numerous oyster reefs here are the combined product of modern estuarine conditions in the bay and its late Holocene evolution. Sidescan-sonar imagery, bathymetry, high-resolution seismic profiles, and sediment cores show that oyster beds occupy the crests of a series of shoals that range from 1 to 7 km in length, trend roughly north-south perpendicular to the long axes of the bay and sound, and are asymmetrical with steeper sides facing to the west. Surface sediment samples show that the oyster beds consist of shelly sand, while much of the remainder of the bay floor is covered by mud delivered by the Apalachicola River. The present oyster reefs rest on sandy delta systems that advanced southward across the region between 6400 and 4400 yr BP when sea level was 4–6 m lower than present. Oysters started to colonize the region around 5100 yr BP and became extensive by 1200 and 2400 yr BP. Since 1200 yr BP, their aerial extent has decreased due to burial of the edges of the reefs by the prodelta mud that continues to be supplied by the Apalachicola River. Oyster reefs that are still active are narrower than the original beds, have grown vertically, and become asymmetrical in cross-section. Their internal bedding indicates they have migrated westward, suggesting a net westerly transport of sediment in the bay.

Florida↗

USGS2006

Long-term trends of bloater ( Coregonus hoyi ) recruitment in Lake Michigan: evidence for the effect of sex ratio

Long-term population trends are generally explained by factors extrinsic (e.g., climate, predation) rather than intrinsic (e.g., genetics, maternal effects) to the population. We sought to understand the long-term population dynamics of an important native Lake Michigan prey fish, the bloater Coregonus hoyi . Over a 38-year time series, three 10- to 15-year phases occurred (poor, excellent, and then poor recruitment) without high interannual variability within a particular phase. We used dynamic linear models to determine whether extrinsic (winter and spring temperature, alewife predator densities) or intrinsic factors (population egg production, adult condition, adult sex ratio) explained variation in recruitment. Models that included population egg production, sex ratio, winter and spring temperature, and adult bloater condition explained the most variation. Of these variables, sex ratio, which ranged from 47% to 97% female across the time series, consistently had the greatest effect: recruitment declined with female predominance. Including biomass of adult alewife predators in the models did not explain additional variation. Overall our results indicated that bloater recruitment is linked to its sex ratio, but understanding the underlying mechanisms will require additional efforts.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2021

A study of marine temperature variations in the northern Gulf of Alaska across years of marine heatwaves and cold spells

We use over 100 in situ and remotely sensed temperature datasets to investigate thermal variability within and across the intertidal nearshore, coastal and offshore waters of the northern Gulf of Alaska. For the years 1970 through 2019 we document a warming trend of 0.24±0.10 °C per decade for the coastal northern shelf (0-250 m depth average) and a Gulf-wide sea surface temperature (SST) trend of 0.25±0.11 °C per decade. The Gulf-wide SST trend in the last halfcentury is more than twice that of the 0.11±0.003 °C warming rate computed for 1900-2019. Decorrelation length scales vary regionally and correlation of synoptic scale fluctuations (less than one month) between two stations rapidly degrades with increasing station distance, accounting for less than 10% of the covariance for separations exceeding 100 km. In contrast, stations separated by as much as 500 km retain 50% of their covariance in common for seasonal and sub-seasonal fluctuations. While satellite-based measures often capture most of the daily SST anomaly in coastal and offshore waters, a significant portion of the variance (30-40%) can remain unresolved, even exceeding 75% in the nearshore realm. Similarly, the North Pacific and Gulf of Alaska leading modes of SST variability leave large fractions (25-50%) of the subseasonal thermal variance unresolved. These evaluations show the importance of in situ temperature records for studies that seek to understand mechanistic responses of marine organisms to habitat variability at biologically important time and space scales. We find that near-bottom temperature anomalies on the outer shelf vary inversely with surface temperatures and with near-bottom salinity, suggesting that thermal anomalies are also linked with nutrient flux anomalies. A case study of the recent Pacific marine heatwave and transition out of preceding cool years shows that the northern Gulf of Alaska surface temperatures (0-50 m) were elevated from 2014 to 2019 relative to the long-term record. Coastal temperatures warmed contemporaneously with offshore waters through the 2013 calendar year. In contrast, deep inner shelf waters (200-250 m) exhibited delayed warming relative to the surface and relative to deep waters offshore at the same depth. While offshore surface waters cooled from early 2014 into 1-2 Science Synthesis Final Report Gulf Watch Alaska, 2021 early 2016, the shelf continued to warm over this time as the effects of local air-sea and advective heat fluxes continued to permeate across the northern Gulf. These results highlight the importance of different heating mechanisms for surface and near-bottom waters across the northern Gulf of Alaska.

Alaska↗

USGS1997

Sea-floor geology of a part of Mamala Bay, Hawai'i

We surveyed the sea-floor geology within a 200-km2 area of Mamala Bay, off Honolulu, Hawai'i, by collecting and analyzing sidescan sonar images, 3.5kHz profiles, video and still visual images, and box-core samples. The study area extends from 20-m water depth on the insular shelf to 600-m water depth in a southeast-trending trough. The sidescan images depict three principal types of seafloor material: low-backscatter natural sediment, high-backscatter drowned carbonate reef, and intermediate-backscatter dredged-material deposits. Cores indicate that the natural sediment is muddy sand, composed of carbonate reef and microfauna debris with some volcanic grains. Vague areal trends in composition are evident. The dredged material comprises poorly sorted, cobble- to clay-size mixtures of reef, volcanic, and man-made debris, up to 35 cm thick. Dredged-material deposits are not evident in the 3.5-kHz profiles. In the sidescan images they appear as isolated, circular to subcircular imprints, apparently formed by individual drops, around the periphery of their occurrence, but they overlap and coalesce to a nearly continuous, intermediate-backscatter blanket toward the center of three disposal sites investigated. We did not observe noticeable currents during our camera surveys, but there is abundant evidence of sediment reworking: symmetrical and asymmetrical ripples in the visual images, sand waves in the 3.5-kHz profiles and side-scan images, moats around the reefs in 3.5-kHz profiles, winnowed dredged material in the visual images, and burial of dredged material by natural sediment in cores. Most current indicators imply a westerly to northwesterly transport direction, along contours or upslope, although there are a few areas of easterly indicators. Internal waves probably drive the transport; their possible existence is implied by measured water-column density gradients.

Pacific Science↗

USGS1982

The memory of the accreting plate boundary and the continuity of fracture zones

A detailed aeromagnetic anomaly map of the Mesozoic seafloor-spreading lineations southwest of Bermuda reveals the dominant magnetic grain of the oceanic crust and the character of the accreting boundary at the time of crustal formation. The magnetic anomaly pattern is that of a series of elongate lobes perpendicular to the fracture zone (flowline) trends. The linear sets of magnetic anomaly peaks and troughs have narrow regions of reduced amplitude anomalies associated with the fracture zones. During the period of Mesozoic geomagnetic polarity reversals (when 1200 km of central North Atlantic seafloor formed), the Atlantic accreting boundary consisted of stationary, elongate, spreading center cells that maintained their independence even though sometimes only minor spatial offsets existed between cells. Normal oceanic crustal structure was formed in the spreading center cells, but structural anomalies and discontinuities characteristic of fracture zones were formed at their boundaries, which parallel flowlines of Mesozoic relative plate motion in the central North Atlantic. We suggest that the memory for a stationary pattern of independent spreading center cells resides in the young brittle lithosphere at the accreting boundary where the lithosphere is weakest; here, each spreading center cell independently goes through its cylce of stress buildup, stress release, and crustal accretion, after which its memory is refreshed. The temporal offset between the peaks of the accretionary activity that takes place within each cell may provide the mechanism for maintaining the independence of adjacent spreading center cells through times when no spatial offset between the cells exists.

Earth and Planetary Science Letters↗

USGS2020

Integrating side-scan sonar and acoustic telemetry to estimate the annual spawning run size of Atlantic sturgeon in the Hudson River

There is considerable interest in evaluating the status and trends of sturgeon populations, yet many traditional approaches to estimating the abundance of fishes are intractable due to their biology and rarity. Side-scan sonar has recently emerged as an effective tool for censusing sturgeon in rivers, yet challenges remain for censusing open populations that may visit specific habitats over periods of time (e.g., spawning runs). We use a hierarchical model to integrate side-scan sonar with acoustic telemetry, to estimate the proportion of a spawning run fitted with acoustic tags (12%; 95% CRI = 8-16%) and extrapolate to the total run size in 2014. Our investigation represents a novel approach to generating run size estimates in a large river and provides the first estimate of Atlantic sturgeon spawning run size for the Hudson River (N ̂ = 466; 95% CRI = 310-745) since the fishery moratorium in the 1990’s. Our estimate suggests that the Hudson River holds one of the largest contemporary populations of Atlantic sturgeon, but also indicates that it remains sharply depleted relative to virgin conditions.

Hudson River↗

USGS1997

Sea-floor geology of a part of Mamala Bay, Hawaii

We surveyed the sea-floor geology within a 200-km2 area of Mamala Bay, off Honolulu, Hawaii by collecting and analyzing sidescan sonar images, 3.5-kHz profiles, video and still visual images, and box-core samples. The study area extends from 20-m water depth on the insular shelf to 600-m water depth in a southeast-trending trough. The sidescan images depict three principal types of sea-floor material: low-backscatter natural sediment, high-backscatter drowned carbonate reef, and intermediate-backscatter dredged-material deposits. Cores indicate that the natural sediment is muddy sand, composed of carbonate reef and microfauna debris with some volcanic grains. Vague areal trends in composition are evident. The dredged material comprises poorly sorted, cobble- to clay-size mixtures of reef, volcanic, and man-made debris, up to 35 cm thick. Dredged-material deposits are not evident in the 3.5-kHz profiles. In the sidescan images they appear as isolated, circular to subcircular imprints, apparently formed by individual drops, around the periphery of their occurrence, but they overlap and coalesce to a nearly continuous, intermediate-backscatter blanket toward the center of three disposal sites investigated. We did not observe significant currents during our camera surveys, but there is abundant evidence of sediment reworking: symmetrical and asymmetrical ripples in the visual images, sand waves in the 3.5-kHz profiles and side-scan images, moats around the reefs in 3.5-kHz profiles, winnowed dredged material in the visual images, and burial of dredged material by natural sediment in cores. Most current indicators imply a westerly to northwesterly transport direction, along contours or up-slope, although there are a few areas of easterly indicators. Internal waves probably drive the transport; their possible existence is implied by measured water-column density gradients.

Hawaii↗

USGS2014

River chloride trends in snow-affected urban watersheds: increasing concentrations outpace urban growth rate and are common among all seasons

Chloride concentrations in northern U.S. included in this study have increased substantially over time with average concentrations approximately doubling from 1990 to 2011, outpacing the rate of urbanization in the northern U.S. Historical data were examined for 30 monitoring sites on 19 streams that had chloride concentration and flow records of 18 to 49 years. Chloride concentrations in most studied streams increased in all seasons (13 of 19 in all seasons; 16 of 19 during winter); maximum concentrations occurred during winter. Increasing concentrations during non-deicing periods suggest that chloride was stored in hydrologic reservoirs, such as the shallow groundwater system, during the winter and slowly released in baseflow throughout the year. Streamflow dependency was also observed with chloride concentrations increasing as streamflow decreased, a result of dilution during rainfall- and snowmelt-induced high-flow periods. The influence of chloride on aquatic life increased with time; 29% of sites studied exceeded the concentration for the USEPA chronic water quality criteria of 230 mg/L by an average of more than 100 individual days per year during 2006–2011. The rapid rate of chloride concentration increase in these streams is likely due to a combination of possible increased road salt application rates, increased baseline concentrations, and greater snowfall in the Midwestern U.S. during the latter portion of the study period.

Science of the Total Environment↗

USGS2016

Quantifying gas emissions from the 946 CE Millennium Eruption of Paektu volcano, Democratic People's Republic of Korea/China

Paektu volcano (Changbaishan) is a rhyolitic caldera that straddles the border between the Democratic People's Republic of Korea (DPRK) and China. Its most recent large eruption was the Millennium Eruption (ME; 23 km3 DRE) circa 946 CE, which resulted in the release of copious magmatic volatiles (H2O, CO2, sulfur, and halogens). Accurate quantification of volatile yield and composition is critical in assessing volcanogenic climate impacts but is elusive, particularly for pre-historic or unmonitored eruptions. Here we employ a geochemical technique to quantify volatile composition and yield from the ME by examining trends in incompatible trace and volatile element concentrations in crystal-hosted melt inclusions. We estimate a maximum of 45 Tg S was injected into the stratosphere during the ME. If true yields are close to this maximum, this equates to more than 1.5 times the S released during the 1815 eruption of Tambora, which contributed to the "Year Without a Summer". Our maximum gas yield estimates place the ME among the strongest emitters of climate forcing gases in recorded human history in stark contrast to ice core records that indicate minimal atmospheric sulfate loading after the eruption. We conclude that the potential lack of strong climate forcing occurred in spite of the substantial S yield and suggest that other factors predominated in minimizing climatic effects. This paradoxical case in which high S emissions do not result in substantial climate forcing may present a way forward in building more generalized models for predicting which volcanic eruptions will produce large climate impacts.

Paektu volcano↗

USGS2020

Using advanced population genomics to better understand the relationship between offshore and spawning habitat use for Atlantic Sturgeon

Atlantic Sturgeon ( Acipenser oxyrinchus oxyrinchus ) are a large-bodied anadromous fish that historically supported important fisheries along the east coast of the United States. Following years of overharvest and habitat degradation, populations experienced severe declines. In 2012, the National Marine Fisheries Service listed Atlantic Sturgeon under the Endangered Species Act (ESA; 61 FR 4722). Their listing named five Distinct Population Segments (DPSs), predicated on genetic groups composed of geographically proximate populations. Federal management of Atlantic Sturgeon presents challenges, as sturgeon from each of the five DPSs mix extensively in coastal and marine habitats yet take and recovery progress must be evaluated separately for each unit. Genetic assignment testing based on mitochondrial and microsatellite markers allows individuals to be assigned back to their natal river and DPS. However, this approach is not perfect and some individuals may be incorrectly assigned. Recent advances in genomics offer the potential of a higher resolution approach to genetic assignment testing, and thus may reduce uncertainty associated with assignment testing. In addition, genomics allows a greater number of markers to be examined from across a broader portion of the sturgeon genome, thus may provide an enhanced perspective of population structure for the species, and potentially allow other previously intractable questions to be addressed (Bernatchez et al. 2017, Supple and Shapiro 2018). We used next-generation sequencing to develop a draft genome for Atlantic Sturgeon and identify single nucleotide polymorphisms (SNPs) that could be used to resolve the natal river and DPS of individual Atlantic Sturgeon. We identified 1,210 candidate SNPs within the nuclear genome as well as 49 SNPs within the mitochondrial genome. After filtering and review, we selected 161 nuclear SNPs and 39 mitochondrial SNPs for further testing and evaluation. We used genotyping-in-thousands by sequencing (GT-seq) to simultaneously sequence nuclear SNP loci, mitochondrial SNP loci, and the existing panel of twelve microsatellite loci. This effort required a pilot sequencing run on a single sturgeon sample to test marker amplification and refine primer strengths, followed by a series of sequencing runs to generate baseline data for 288 individuals representing nine populations of Atlantic Sturgeon in four DPSs. Using baseline data from the nine populations, we ran a series of genomic analyses to characterize diversity within and among populations, providing a benchmark for this species using the new SNP markers. Allelic richness was similar for all populations, although there was a general trend of more northern population containing greater levels of allelic richness. Interestingly, we observed linkage disequilibrium among many pairs of loci within many populations. This might be the result of physical linkage but could also suggest these populations are recovering from genetic bottlenecks and/or are effectively small, leading to specific haplotypes to be favored by chance. Pairwise differentiation among populations varied among the populations ( F ST range: 0.010-0.098) and was significantly correlated ( r = 0.771; P < 0.001) to pairwise F ST observed using microsatellite markers). Population clustering and ordination techniques using the new genomic data both support an overall population structure that is similar to the current DPS management units (which were developed primarily based on microsatellite genetic data). Overall, this suggests that existing microsatellite markers and the panel of SNP markers developed in this study provide similar information about the populations structure and ecology of Atlantic Sturgeon. Given the observed differences in allele frequencies among populations, our genomic baseline supports previous assertations that Atlantic Sturgeon show natal homing, despite mixing extensively in marine waters during non-breeding periods. Lower levels of differentiation between populations in the South Atlantic DPS suggest that populations in this region may have greater levels of gene flow relative to their more northerly conspecifics, which has also previously been suggested based on microsatellite data. The observed differentiation among populations provides the necessary foundation for determining the natal river and DPS of Atlantic Sturgeon using assignment testing. We tested the utility of our new genomic baseline for resolving the population and DPS of Atlantic Sturgeon. Our nuclear SNP markers showed utility for identifying the origin of unknown Atlantic Sturgeon samples, as 86.5% were assigned to the correct DPS and 66.3% were assigned to the correct natal river. However, since this study was funded the Conservation Genetics and Genomics Laboratory at Leetown Science Center has made significant improvements to their microsatellite genetic baseline, which now performs more effectively than our new genomic approach (the genetic baseline includes 12 populations and 5 DPSs, and correctly assigns 95.8% of individuals to DPS and 84.9% of individuals to their natal population using 12 microsatellite loci). We conducted an ad hoc exploration of how additional microsatellite or nuclear SNP loci may further improve the accuracy of assignment testing. We found that additional microsatellite markers are likely to result in greater improvements in assignment efficiency than additional nuclear SNPs. However, a much larger number of SNP loci (which if identified could be sequenced using other methods that are now available; e.g., the RAD-capture approach published by Ali et al. 2016) could produce assignment efficiencies that are greater than what is currently feasible using microsatellites. In the absence of further research and development of additional SNP markers for Atlantic Sturgeon (possibly using an approach other than GT-seq), the existing microsatellite loci are the most effective means available to determine the natal river and DPS of Atlantic Sturgeon encountered in offshore waters. Because our new genomic markers were less effective than the existing panel of 12 microsatellite markers, we chose to use the existing microsatellite markers to assign Atlantic Sturgeon captured in another BOEM-funded study (cooperative agreement M16AC00003; Monitoring endangered Atlantic Sturgeon and commercial finfish habitat use offshore New York) following consultation with our project officer. Using this approach, we genotyped and assigned 186 Atlantic Sturgeon captured in coastal waters off the Rockaway Peninsula, New York. The vast majority of these sturgeon were assigned to the New York Bight DPS (94.62%), and most appear to belong to the Hudson River population (87.10%) with smaller contributions from the Delaware River population (7.53%). Smaller contributions (2.15%) were observed from six other populations, including those from the James, York, Kennebec, Ogeechee, and Edisto rivers. Although most of the fish we assigned were assigned to the nearest spawning rivers (Hudson and Delaware), the contributions from distant rivers is consistent with the propensity of this species to move long distances and form mixed stock aggregations along the continental shelf. This finding indicates that spawning populations (and their corresponding DPS) from distant locations may potentially be impacted by offshore activities. In fact, activities in this region of the New York Bight could negatively impact Atlantic Sturgeon population from at least four different DPSs. Genetic or genomic assignment testing remains an essential tool to characterize potential impacts to Atlantic Sturgeon populations and should be applied more broadly to better characterize potential impacts of activities in other locations.

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