SEARCH · USGS Science

Results for “Population and Environment”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 847 records · Page 47Linked to original sources

USGS2016

Optimized methods for total nucleic acid extraction and quantification of the bat white-nose syndrome fungus, Pseudogymnoascus destructans , from swab and environmental samples

The continued spread of white-nose syndrome and its impacts on hibernating bat populations across North America has prompted nationwide surveillance efforts and the need for high-throughput, noninvasive diagnostic tools. Quantitative real-time polymerase chain reaction (qPCR) analysis has been increasingly used for detection of the causative fungus, Pseudogymnoascus destructans , in both bat- and environment-associated samples and provides a tool for quantification of fungal DNA useful for research and monitoring purposes. However, precise quantification of nucleic acid from P. destructans is dependent on effective and standardized methods for extracting nucleic acid from various relevant sample types. We describe optimized methodologies for extracting fungal nucleic acids from sediment, guano, and swab-based samples using commercial kits together with a combination of chemical, enzymatic, and mechanical modifications. Additionally, we define modifications to a previously published intergenic spacer–based qPCR test for P. destructans to refine quantification capabilities of this assay.

Journal of Veterinary Diagnostic Investigation↗

USGS2015

A 30-year chronosequence of burned areas in Arizona: effects of wildfires on vegetation in Sonoran Desert Tortoise ( Gopherus morafkai ) habitats

Fire is widely regarded as a key evolutionary force in fire-prone ecosystems, with effects spanning multiple levels of organization, from species and functional group composition through landscape-scale vegetation structure, biomass, and diversity (Pausas and others, 2004; Bond and Keeley 2005; Pausas and Verdu, 2008). Ecosystems subjected to novel fire regimes may experience profound changes that are difficult to predict, including persistent losses of vegetation cover and diversity (McLaughlin and Bowers, 1982; Brown and Minnich, 1986; Brooks, 2012), losses to seed banks (Esque and others, 2010a), changes in demographic processes (Esque and others, 2004; DeFalco and others, 2010), increased erosion (Soulard and others, 2013), changes in nutrient availability (Esque and others, 2010b), increased dominance of invasive species (Esque and others, 2002; Brooks and others, 2004), and transitions to alternative community states (Davies and others, 2012). In the deserts of the Southwestern United States, fire size and frequency have increased substantially over the last several decades because of an invasive grass/fire feedback cycle (Schmid and Rogers, 1988; D’Antonio and Vitousek, 1992; Swantek and others, 1999; Brooks and Matchett, 2006; Esque and others, 2010a), in which invasive annual species are able to establish fuel loads capable of sustaining large-scale wildfires following years of high rainfall (Esque and Schwalbe, 2002). Native perennial vegetation is not well-adapted to fire in these environments, and widespread, physiognomically dominant species such as creosote bush ( Larrea tridentata ), Joshua tree ( Yucca brevifolia ), giant saguaro cactus ( Carnegiea gigantea ), and paloverde ( Parkinsonia spp.) may be reduced or eliminated (Brown and Minnich, 1986; Esque and others, 2006; DeFalco and others, 2010), potentially affecting wildlife populations including the Sonoran and federally threatened Mojave Desert Tortoises ( Gopherus morafkai and Gopherus agassizii , respectively; Brooks and Esque, 2002; Esque and others, 2003; Drake and others, in press).

Arizona↗

USGS2016

The Outer Banks of North Carolina

The Outer Banks of North Carolina are excellent examples of the nearly 300 barrier islands rimming the Atlantic and Gulf coasts of the United States. These low, sandy islands are among the most dynamic natural landscapes occupied by man. Beach sands move offshore, onshore, and along the shore in the direction of the prevailing longshore currents. In this way, sandy coasts continuously adjust to different tide, wave, and current conditions and to rising sea level that causes the islands to migrate landward. Despite such changes, barrier islands are of considerable environmental importance. The Outer Banks are home to diverse natural ecosystems that are adapted to the harsh coastal environment. Native species tend to be robust and many are specifically adapted to withstand salt spray, periodic saltwater flooding, and the islands’ well-drained sandy soil. The Outer Banks provide an important stopover for birds on the Atlantic flyway, and many species inhabit the islands year round. In addition, Outer Banks beaches provide an important nesting habitat for five endangered or threatened sea turtle species. European explorers discovered North Carolina’s barrier islands in the 16th century, although the islands were not permanently settled until the middle 17th century. By the early 19th century, shipbuilding and lumber industries were among the most successful, until forest resources were depleted. Commercial fishing eventually followed, and it expanded considerably after the Civil War. By the Great Depression, however, little industry existed on the Outer Banks. In response to the effects of a severe hurricane in 1933, the National Park Service and the Civilian Conservation Corps proposed a massive sand-fixation program to stabilize the moving sand and prevent storm waves from sweeping across the entire width of some sections of the islands. Between 1933 and 1940, this program constructed sand fencing on 185 kilometers (115 miles) of beach and planted grass seedlings, trees, and shrubs. In 1937, Congress authorized the Cape Hatteras National Seashore, which was established in 1953. The national seashore preserved one of the world’s best examples of a barrier island environment, and minimized the effect of erosion that was becoming a serious problem. In 1966, Congress authorized the Cape Lookout National Seashore to ensure that Core and Shackleford Banks would not undergo major development and could be preserved in their natural state. The rate of population growth along the Outer Banks in recent decades has been among the highest in North Carolina. More important, however, has been the growth in vacationers—in 2008, more than a quarter of a million visitors during a typical week. Municipalities now need to provide services to a transient population as much as six times as large as their permanent resident population. Although human activities have dominated the landscape changes observed on the Outer Banks for the past century or two, these changes must be understood in the context of the prevailing atmospheric, oceanic, and geologic processes that have governed the form and function of these islands for thousands of years. It is these natural processes that imbue the Outer Banks with their unique and dichotomous qualities of tranquility and tumult. In the presence of human occupation, it is these same processes that make the islands one of the highest natural-hazard risk zones along the Eastern Seaboard of the United States.

North Carolina↗

USGS2002

Effects of subsurface aeration and trinexapac-ethyl application on soil microbial communities in a creeping bentgrass putting green

The sensitivity of creeping bentgrass (Agrostis palustris Huds.) to the extreme heat found in the southeastern United States has led to the development of new greens-management methods. The purpose of this study was to examine the effects of subsurface aeration and growth regulator applications on soil microbial communities and mycorrhizal colonization rates in a creeping bentgrass putting green. Two cultivars (Crenshaw and Penncross), a growth regulator (trinexapacethyl), and subsurface aeration were evaluated in cool and warm seasons. Total bacterial counts were higher in whole (unsieved) soils than in sieved soils, indicating a richer rhizosphere soil environment. Mycorrhizal infection rates were higher in trinexapac-ethyl (TE) treated plants. High levels of hyphal colonization and relatively low arbuscule and vesicle occurrence were observed. Principal components analysis of whole-soil fatty acid methyl ester (FAME) profiles indicated that warm-season microbial populations in whole and sieved soils had similar constituents, but the populations differed in the cool season. FAME profiles did not indicate that subsurface aeration and TE application affected soil microbial community structure. This is the first reported study investigating the influences of subsurface aeration and TE application on soil microorganisms in a turfgrass putting green soil.

Biology and Fertility of Soils↗

USGS2022

Magma storage and transport timescales for the 1959 Kīlauea Iki eruption and implications for diffusion chronometry studies using time-series samples versus tephra deposits

Complex crystal cargo in basaltic eruptions has the potential to yield diverse insights on pre- and syn-eruptive timescales of magma storage and transport. Research on eruption products from the 1959 eruption from Kīlauea Iki Crater at Kīlauea volcano (Hawai‘i) demonstrates that time-series samples collected during an eruption can yield a wealth of information not accessible by studying the fall deposit alone. Major element zoning in olivine crystals illustrates four environments of magma storage that were variably mixed and progressively involved in the eruption. Diffusion timescales retrieved from crystals < 1 mm in size are typically much shorter than those from crystals > 1 mm, illustrating the additional complexity of information recorded by different grain sizes and olivine populations. The timescales can be divided into two groups: (1) t > 100 days reflect longer-term magma recharge into Kīlauea’s deep (8–10 km) reservoir system and (2) t < 100 days broadly correspond to a period of unrest and inflation beginning ~ 3 months prior to eruption. Some timescales reflect syn-eruptive processes, where diffusion began after the eruption onset. Progressive changes in zoning populations in the time-series scoriae samples illustrate how quickly diffusive re-equilibration can erase older magmatic histories and information and underscores that studies on fall deposits can lead to an incomplete record of magmatic processes. Thus, diffusion timescales from fall deposits alone should be cautiously interpreted with the caveat that they may be missing a substantial part of the total eruptive event and, therefore, the record of magmatic histories inferred from crystal cargo.

Hawaii↗

USGS2019

Efficacy of eDNA as an early detection indicator for Burmese pythons in the ARM Loxahatchee National Wildlife Refuge in the Greater Everglades Ecosystem

Environmental DNA (eDNA) detection of invasive species can be used to delimited occupied ranges and estimate probabilities to inform management decisions. Environmental DNA is shed into the environment through skin cells and bodily fluids and can be detected in water samples collected from lakes, rivers, and swamps. In south Florida, invasive Burmese pythons occupy much of the Greater Everglades in mostly inaccessible habitat and are credited with causing severe declines of native species’ populations. Detection of Burmese pythons by traditional methods, such as trapping and visual searching, have been largely ineffective, making eDNA a superior method for differentiating invaded habitat. We adapted a quantitative PCR eDNA assay for droplet digital PCR, a state-of-the-art method that improves precision and accuracy. From August 2014 to October 2016, locations in and around Arthur R. Marshall Loxahatchee National Wildlife Refuge in southeast Florida were surveyed for Burmese python eDNA. The Refuge is maintained to provide water storage and is considered one of the last remnants of the northern Everglades wetlands. Positive eDNA detections were made at each of the five sampling events, assessing a total of 399 samples, with moderate occurrence (ψ=58-91%) and detection (p=40-70%) probabilities, potentially reduced by high PCR inhibition-levels. The high occurrence rates and geographic distribution of the positive samples within the Refuge suggests a steady release of python eDNA from a resident Burmese python population and reduces support for primarily transport of eDNA through boats or flowing water from the north. The first confirmed sighting of a Burmese python in the Refuge occurred in September 2016, after eDNA testing had indicated the presence of pythons. An established population is not expected this far north, however, the detections likely indicate northern range limit of a consistent population at Loxahatchee on the eastern side of the Florida peninsula. Our study demonstrates the benefit of eDNA for determining more accurate range limits and expansion information for Burmese pythons, as well as laying the foundation for the assessment of control efforts.

Florida↗

USGS2023

Survival, healing, and swim performance of juvenile migratory sea lamprey (Petromyzon marinus) implanted with a new acoustic microtransmitter designed for small eel-like fishes

Background Little is known about the transformer stage of the parasitic lampreys, a brief but critical period that encompasses juvenile out-migration from rivers to lakes or oceans to begin parasitic feeding. Information about this life stage could have significant conservation implications for both imperiled and invasive lampreys. We investigated tag retention, survival, wound healing, and swim performance of newly transformed sea lamprey ( Petromyzon marinus ) implanted with a new micro-acoustic transmitter, the eel–lamprey acoustic transmitter (ELAT), in a controlled laboratory environment. Results The 61-day survival of our tagged subjects was 71%, within the range reported in similar studies of juvenile lampreys. However, survival was significantly lower in the tagged animals (vs control), with no effect statistically attributable to measures of animal length, mass, condition, or population of origin (Great Lakes vs. Atlantic drainage). Mortality in tagged fish was concentrated in the first four days post-surgery, suggesting injury from the surgical process. An unusually long recovery time from anesthesia may have contributed to the increased mortality. In a simple burst swim assay, tagged animals swam significantly slower (− 22.5%) than untagged animals, but were not significantly different in endurance swim tests. A composite wound healing score at day four was a significant predictor of maximum burst swim speed at day 20, and wound condition was related to animal mass, but not length, at the time of tagging. Conclusions Impairments to survival and swim performance of juvenile sea lamprey implanted with the ELAT transmitter were within currently reported ranges for telemetry studies with small, difficult to observe fishes. Our results could be improved with more refined anesthesia and surgical techniques. The ability to track migratory movements of imperiled and pest populations of parasitic lampreys will improve our ability to estimate vital rates that underlie recruitment to the adult population (growth, survival) and to investigate the environmental factors that regulate the timing and rates of movement, in wild populations.

Atlantic Ocean, Connecticut River, Laurentian Grea↗

USGS2023

Survival of Common Loon chicks appears unaffected by Bald Eagle recovery in northern Minnesota

Recovering species are not returning to the same environments or communities from which they disappeared. Conservation researchers and practitioners are thus faced with additional challenges in ensuring species resilience in these rapidly changing ecosystems. Assessing the resilience of species in these novel systems can still be guided by species’ ecology, including knowledge of their population size, life history traits, and behavioral adaptations, as well as the type, strength, and number of ways that they interact with other species in the community. We summarized broad trends of Common Loons ( Gavia immer ) breeding at Voyageurs National Park from 1973 to 2009, and evaluated the effects of increased risk from recovering Bald Eagles ( Haliaeetus leucocephalus ) on chick survival from 2004 to 2006. Adult Common Loons appear to have increased over time. Using Bayesian survival models that accounted for imperfect detection of unmarked individuals, we determined that chick survival of Common Loons was high from year to year and was unrelated to predation risk from Bald Eagles because chicks in territories closer to active nests did not experience greater mortality than those farther away. We suggest that Common Loon chicks were unaffected by the recovery of this top predator during the three years of sampling. Previous research indicates that Bald Eagles and other predators are an important source of egg losses, but Common Loons can compensate by re-nesting. Despite current uncertainties from anthropogenic threats, knowledge of a species’ ecology remains instrumental in determining its resilience during recovery.

Minnesota↗

USGS2007

Bigheaded carps : a biological synopsis and environmental risk assessment

The book is a detailed risk assessment and biological synopsis of the bigheaded carps of the genus Hypophthalmichthys, which includes the bighead, silver, and largescale silver carps. It summarizes the scientific literature describing their biology, ecology, uses, ecological effects, and risks to the environment. Includes information on taxonomy and distinguishing characteristics, hybrids, native and introduced ranges, temperature and salinity tolerances, fecundity, sexual maturity and mating behavior, spawning, early development, feeding habits, growth rate and longevity, response to physical stimuli, associated diseases and parasites, human uses, environmental effects, potential range, population control measures. Summarizes United States federal and state regulations, and assesses the risk posed by these species in the United States.

Book↗

USGS2024

Understanding and forecasting potential recruitment of Lake Michigan fishes by modeling growth and survival of larval stages with coupled climate, biophysical, and bioenergetics models

Individual adult fish can produce huge numbers of small offspring, but most die in the first weeks of life. Environmental changes that lead to even small changes in early life survival can have a disproportionate impact on the number of fish that survive and ultimately support fisheries. Lake Michigan supports valuable recreational and commercial fisheries that can fluctuate with how well fish survive in early life. Statistical models have revealed linkages between survival and climate characteristics, such as water temperature, but the exact mechanisms remain unclear and how future climate will affect the survival of young fish is highly uncertain. We integrated a series of models to investigate how climate variability may explain historical variation in the survival of young alewife and yellow perch, two fish populations that support key fisheries either directly or indirectly, while also projecting their future survival in the mid-21st century under different scenarios informed by consultation with fishery managers. Our model results revealed how spring and summer water temperatures in Lake Michigan can affect the environment in which young alewife and yellow perch grow and survive. Specifically, in years when lake warming is rapid, young fish are more likely to be transported from their natal, productive, nearshore environments to cooler and less productive offshore environments, unless adults also spawn earlier in these warm years. Furthermore, model predictions of prey abundance for young fish in the mid-21st century indicate less favorable conditions for growth and survival compared to predictions based solely on warming temperatures. With completion of the final products in the coming year, including predicted growth and survival of young fish under different future scenarios, fishery managers will have more information to share with stakeholders regarding how expectations may need to be modified regarding alewife and yellow perch productivity.

Lake Michigan↗

USGS2013

Tracking animals in freshwater with electronic tags: past, present and future

Considerable technical developments over the past half century have enabled widespread application of electronic tags to the study of animals in the wild, including in freshwater environments. We review the constraints associated with freshwater telemetry and biologging and the technical developments relevant to their use. Technical constraints for tracking animals are often influenced by the characteristics of the animals being studied and the environment they inhabit. Collectively, they influence which and how technologies can be used and their relative effectiveness. Although radio telemetry has historically been the most commonly used technology in freshwater, passive integrated transponder (PIT) technology, acoustic telemetry and biologgers are becoming more popular. Most telemetry studies have focused on fish, although an increasing number have focused on other taxa, such as turtles, crustaceans and molluscs. Key technical developments for freshwater systems include: miniaturization of tags for tracking small-size life stages and species, fixed stations and coded tags for tracking large samples of animals over long distances and large temporal scales, inexpensive PIT systems that enable mass tagging to yield population- and community-level relevant sample sizes, incorporation of sensors into electronic tags, validation of tag attachment procedures with a focus on maintaining animal welfare, incorporation of different techniques (for example, genetics, stable isotopes) and peripheral technologies (for example, geographic information systems, hydroacoustics), development of novel analytical techniques, and extensive international collaboration. Innovations are still needed in tag miniaturization, data analysis and visualization, and in tracking animals over larger spatial scales (for example, pelagic areas of lakes) and in challenging environments (for example, large dynamic floodplain systems, under ice). There seems to be a particular need for adapting various global positioning system and satellite tagging approaches to freshwater. Electronic tagging provides a mechanism to collect detailed information from imperilled animals and species that have no direct economic value. Current and future advances will continue to improve our knowledge of the natural history of aquatic animals and ecological processes in freshwater ecosystems while facilitating evidence-based resource management and conservation.

Animal Biotelemetry↗

USGS2015

Petrologic testament to changes in shallow magma storage and transport during 30+ years of recharge and eruption at Kīlauea Volcano, Hawai‘i

Petrologic monitoring of Kīlauea Volcano from January 1983 to October 2013 has yielded an extensive record of glass, phenocryst, melt inclusion, and bulk-lava chemistry from well-quenched lava. When correlated with 30+ years of geophysical and geologic monitoring, petrologic details testify to physical maturation of summit-to-rift magma plumbing associated with sporadic intrusion and prolonged magmatic overpressurization. Changes through time in bulk-lava major- and trace-element compositions, along with glass thermometry, record shifts in the dynamic balance of fractionation, mixing, and assimilation processes inherent to magma storage and transport during near-continuous recharge and eruption. Phenocryst composition, morphology, and texture, along with the sulfur content of melt inclusions, constrain coupled changes in eruption behavior and geochemistry to processes occurring in the shallow magmatic system. For the first 17 years of eruption, magma was steadily tapped from a summit reservoir at 1–4 km depth and circulating between 1180 and 1200°C. Furthermore, magma cooled another 30°C while flowing through the 18 km long rift conduit, before erupting olivine-spinel-phyric lava at temperatures of 1150–1170°C in a pattern linked with edifice deformation, vent formation, eruptive vigor, and presumably the flux of magma into and out of the summit reservoir. During 2000–2001, a fundamental change in steady state eruption petrology to that of relatively low-temperature, low-MgO, olivine(-spinel)-clinopyroxene-plagioclase-phryic lava points to a physical transformation of the shallow volcano plumbing uprift of the vent. Preeruptive comagmatic mixing between hotter and cooler magma is documented by resorption, overgrowth, and compositional zonation in a mixed population of phenocrysts grown at higher and lower temperatures. Large variations of sulfur (50 to >1000 ppm) in melt inclusions within individual phenocrysts and among phenocrysts in most samples provide an unequivocal glimpse of rapid crystal growth amid sulfur degassing at <30 MPa in a turbulent preeruptive environment. We speculate that, during the last decade, one or more shallow open-system reservoirs developed along the conduit between the summit and Pu‘u ‘Ō‘ō and now serve to buffer the magmatic throughput associated with ongoing recharge and eruption. Lava with identical trace-element signatures erupted simultaneously at the summit and at Pu‘u ‘Ō‘ō from 2008 to 2013 confirms magmatic continuity between the vents. Complementary changes in compositions of matrix glasses, phenocrysts, and melt inclusions of summit tephra are mirrored by similar changes in contemporaneous rift lava at eruption temperatures 20–35°C lower than those at the summit. Petrologic parameters measured at opposite ends of the shallow magmatic plumbing system are both correlated with summit deformation, demonstrating that effects of summit magma chamber pressurization are translated throughout interconnected magma pathways in the shallow edifice.

Hawaii↗

USGS2004

Estimating disturbance effects from military training using developmental instability and physiological measures of plant stress

We used developmental instability, water potential, and variable fluorescence to determine if populations of winged sumac (Rhus copallinum) were being negatively effected by military training disturbance. We established nine sites that represented a land-use disturbance gradient with three impact levels (low, medium, and high), the effects mostly due to mechanized infantry training maneuvers. Although mean values of developmental instability, water potential, and variable fluorescence differed significantly among sites, the patterns did not consistently differentiate sites relative to the disturbance gradient. At the population level, some measures of developmental instability and variable fluorescence were positively correlated. All nine sites consisted of habitat mosaics, with the abundance of higher quality habitat patches and canopy gaps closely related to habitat impacts. It may be that R. copallinum is selecting similar micro-environments at all sites and therefore minimizing inter-site variation in stress measures, despite large differences in overall habitat condition. Our results call for caution in developing ecological indicators using the response of physiological and morphological measures from a single plant species. ?? 2003 Elsevier Ltd. All rights reserved.

Ecological Indicators↗

USGS2014

Beach science in the Great Lakes

Monitoring beach waters for human health has led to an increase and evolution of science in the Great Lakes, which includes microbiology, limnology, hydrology, meteorology, epidemiology, and metagenomics, among others. In recent years, concerns over the accuracy of water quality standards at protecting human health have led to a significant interest in understanding the risk associated with water contact in both freshwater and marine environments. Historically, surface waters have been monitored for fecal indicator bacteria (fecal coliforms, Escherichia coli , enterococci), but shortcomings of the analytical test (lengthy assay) have resulted in a re-focusing of scientific efforts to improve public health protection. Research has led to the discovery of widespread populations of fecal indicator bacteria present in natural habitats such as soils, beach sand, and stranded algae. Microbial source tracking has been used to identify the source of these bacteria and subsequently assess their impact on human health. As a result of many findings, attempts have been made to improve monitoring efficiency and efficacy with the use of empirical predictive models and molecular rapid tests. All along, beach managers have actively incorporated new findings into their monitoring programs. With the abundance of research conducted and information gained over the last 25 years, “Beach Science” has emerged, and the Great Lakes have been a focal point for much of the ground-breaking work. Here, we review the accumulated research on microbiological water quality of Great Lakes beaches and provide a historic context to the collaborative efforts that have advanced this emerging science.

Great Lakes↗

USGS2013

Development of a geodatabase for springs within and surrounding outcrops of the Trinity aquifer in northern Bexar County, Texas, 2010-11

The Trinity aquifer is an important source of groundwater in central Texas, including Bexar County, where population growth has resulted in an increased demand for water (Ashworth, 1983; Mace and others, 2000). Numerous springs issue from rock outcrops within and surrounding the Trinity aquifer in northern Bexar County (fig. 1). The effects of increased groundwater withdrawals from the Trinity aquifer on springflow in the area are not well documented, but because the total amount of water entering, leaving, and being stored in a groundwater system must be conserved, increased groundwater withdrawals will result in decreases in springflow (Alley and others, 1999). Documenting the location, discharge, and basic water-quality information of the springs in northern Bexar County can provide a baseline assessment for comparison to future conditions. Accordingly, the U.S. Geological Survey (USGS), in cooperation with the Trinity Glen Rose Groundwater Conservation District, the Edwards Aquifer Authority, and the San Antonio River Authority, developed a geodatabase populated with data associated with springs within and surrounding outcrops of the Trinity aquifer in northern Bexar County during 2010–11. A geodatabase provides a framework for organizing spatial and tabular data (such as the geographic location and water-quality characteristics, respectively) in a relational database environment, making it easier and more intuitive to evaluate changes over time. Data for 141 springs within and surrounding the Trinity aquifer outcrops in northern Bexar County were compiled from existing reports and databases. These data were augmented with selected data collected onsite, including the location, discharge, and water-quality characteristics of selected springs, and were entered into the geodatabase. The Trinity aquifer in central Texas is commonly divided into the upper, middle, and lower Trinity aquifers; all of the information that was compiled pertaining to the aquifer is for the upper and middle Trinity aquifers.

Texas↗

USGS2015

Trust Species and Habitat Branch: using the innovative approaches of today to conserve biodiversity for tomorrow

Some of the biggest challenges facing wildlife today are changes to their environment from both natural and anthropogenic causes. Natural resource managers, planners, policy makers, industry and private landowners must make informed decisions and policies regarding management, conservation, and restoration of species, habitats, and ecosystem function in response to these changes. Specific needs include (1) a better understanding of population status and trends; (2) understanding of species’ habitat needs and roles in supporting ecosystem functions; (3) the ability to assess species’ responses to environmental changes and predict future responses; and (4) the development of innovative techniques and tools to better understand, minimize or prevent any unintended consequences of environmental change. The Trust Species and Habitats Branch of the Fort Collins Science Center includes a diverse group of scientists encompassing both traditional and specialized expertise in wildlife biology, ecosystem ecology, quantitative ecology, disease ecology, molecular genetics, and stable isotope geochemistry. Using our expertise and collaborating with others around the world, our goal is to provide the information, tools, and technologies that our partners need to support conservation, management, and restoration of terrestrial vertebrate populations, habitats, and ecosystem function in a changing world.

Fact Sheet↗

USGS1983

Hydrologic and geomorphic studies of the Platte River basin

The channels of the Platte River and its major tributaries, the South Platte and North Platte Rivers in Colorado, Wyoming, and Nebraska, have undergone major changes in hydrologic regime and morphology since about 1860, when the water resources of the basin began to be developed for agricultural, municipal, and industrial uses. These water uses have continued to increase with growth in population and land development. Diversion of flow from channels, storage of water in reservoirs, and increased use of ground water have affected the distribution and timing of streamflows and the transport of fluvial sediments. All these factors have contributed to changes in channel geometry and the riverine environment. In 1979, the U.S. Geological Survey began investigations in the Platte River basin to determine the effects of water use on the hydrology and morphology of the Platte River and its major tributaries. These investigations also considered the relationship of hydrologic regime to factors that control or affect the habitat of migratory waterfowl in the Platte River valley. This volume brings together the results of several research studies on historical changes in channel morphology, surface-water hydrology, hydraulic geometry, sediment-transport and bedform processes, ground-water and surface-water relations, stochastic models of streamflow and precipitation, and methods for estimating discharge required to maintain channel width. In each of the studies, data on some segment of the Platte River hydrologic system were collected and interpreted. All the studies are interrelated; together they provide some degree of understanding of regime changes that are occurring. The hydrologic research described in the following chapters will be useful in decision-making pertaining to the management of water resources and migratory waterfowl habitats.

Colorado, Nebraska, Wyoming↗

USGS2014

Water quality and algal community dynamics of three deepwater lakes in Minnesota utilizing CE-QUAL-W2 models

Water quality, habitat, and fish in Minnesota lakes will potentially be facing substantial levels of stress in the coming decades primarily because of two stressors: (1) land-use change (urban and agricultural) and (2) climate change. Several regional and statewide lake modeling studies have identified the potential linkages between land-use and climate change on reductions in the volume of suitable lake habitat for coldwater fish populations. In recent years, water-resource scientists have been making the case for focused assessments and monitoring of sentinel systems to address how these stress agents change lakes over the long term. Currently in Minnesota, a large-scale effort called “Sustaining Lakes in a Changing Environment” is underway that includes a focus on monitoring basic watershed, water quality, habitat, and fish indicators of 24 Minnesota sentinel lakes across a gradient of ecoregions, depths, and nutrient levels. As part of this effort, the U.S. Geological Survey, in cooperation with the Minnesota Department of Natural Resources, developed predictive water quality models to assess water quality and habitat dynamics of three select deepwater lakes in Minnesota. The three lakes (Lake Carlos in Douglas County, Elk Lake in Clearwater County, and Trout Lake in Cook County) were assessed under recent (2010–11) meteorological conditions. The three selected lakes contain deep, coldwater habitats that remain viable during the summer months for coldwater fish species. Hydrodynamics and water-quality characteristics for each of the three lakes were simulated using the CE-QUAL-W2 model, which is a carbon-based, laterally averaged, two-dimensional water-quality model. The CE-QUAL-W2 models address the interaction between nutrient cycling, primary production, and trophic dynamics to predict responses in the distribution of temperature and oxygen in lakes. The CE-QUAL-W2 models for all three lakes successfully predicted water temperature, on the basis of the two metrics of absolute mean error and root mean square error, using measured inputs of water temperature and nutrients. One of the main calibration tools for CE-QUAL-W2 model development was the vertical profile temperature data, available for all three lakes. For all three lakes, the absolute mean error and root mean square error were less than 1.0 degree Celsius and 1.2 degrees Celsius, respectively, for the different depth ranges used for vertical profile comparisons. In Lake Carlos, simulated water temperatures compared better to measured water temperatures in the epilimnion than in the hypolimnion. The reverse was true for the other two lakes, Elk Lake and Trout Lake, where the simulated results were slightly better for the hypolimnion than the epilimnion. The model also was used to approximate the location of the thermocline throughout the simulation periods, approximately April to November, in all three lake models. Deviations between the simulated and measured water temperatures in the vertical lake profile commonly were because of an offset in the timing of thermocline shifts rather than the simulated results missing thermocline shifts altogether.

Minnesota↗