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Hydrologic requirements of and consumptive ground-water use by riparian vegetation along the San Pedro River, Arizona

This study is a coordinated effort by the U.S. Geological Survey (USGS), the U.S. Department of Agriculture, Agricultural Research Service (USDA ARS), and Arizona State University, with assistance from the U.S. Army Corps of Engineers, the University of Wyoming, and the University of Arizona. The specific objectives of the study were: to determine the water needs of riparian vegetation through the riparian growing season and throughout the SPRNCA to ensure its long-term ecological integrity; to quantify the total water use of riparian vegetation within the SPRNCA; and to determine the source of water used by key riparian plant species within the SPRNCA. To meet these objectives, the study was divided into three elements: (1) a characterization of the status and variability of hydrologic factors within the riparian system (USGS), (2) a riparian biohydrology study to relate spatial and temporal aspects of riparian changes and condition to the hydrologic variables (Arizona State University), and (3) a water-use evapotranspiration (ET) study to quantify annual consumptive ground-water use by riparian transpiration and direct evaporation from the stream channel (USDA ARS) in cooperation with the U.S. Army Corps of Engineers, the University of Wyoming, and the University of Arizona. Twenty-six sites within the SPRNCA were selected for collection of vegetation data from three primary streamflow regimes (perennial, intermittent-wet, intermittent-dry), which include the principal vegetation communities. Detailed hydrologic-condition data were collected at a subset of 16 of these sites, called the SPRNCA biohydrology sites. Water-use and water-source data were collected at a subset of 5 of the 16 biohydrology sites. Vegetation data also were collected at supplemental sites within the SPRNCA boundary in the Upper San Pedro Basin and in the Lower San Pedro Basin. In addition to information about vegetation and geomorphic conditions, hydrologic data collected at the 16 biohydrology sites were used to delineate 14 reaches that were internally homogenous in terms of streamflow hydrology (spatial intermittence of streamflow) and geomorphology (channel sinuosity and flood-plain width). Although this overall study consisted of three elements, the elements were closely coordinated to derive integrated results. Specifically, the connection between water demand, water availability, and riparian functioning represents a synthesis of the study elements. The effects of intra- and inter-annual as well as spatial variability of hydrologic and riparian factors were observed in each of the three study elements.

Arizona↗

Summary of Environmental Monitoring and Assessment Program (EMAP) activities in South Dakota, 2000–2004

The U.S. Environmental Protection Agency (USEPA) initiated data-collection activities for the Environmental Monitoring and Assessment Program-West (EMAP-West) in South Dakota during 2000. The objectives of the study were to develop the monitoring tools necessary to produce unbiased estimates of the ecological condition of surface waters across a large geographic area of the western United States, and to demonstrate the effectiveness of those tools in a large-scale assessment. In 2001, the U.S. Geological Survey (USGS) and the South Dakota Department of Game, Fish and Parks (GF&P) established a cooperative agreement and assumed responsibility for completing the remaining assessments for the perennial, wadable streams of the EMAP-West in the State. Stream assessment sites were divided into two broad categories-the first category of sites was randomly selected and assigned by the USEPA for South Dakota. The second category consisted of sites that were specifically selected because they appeared to have reasonable potential for representing the best available physical, chemical, and biological conditions in the State. These sites comprise the second category of assessment sites and were called 'reference' sites and were selected following a detailed evaluation process. Candidate reference site data will serve as a standard or benchmark for assessing the overall ecological condition of the randomly selected sites. During 2000, the USEPA completed 22 statewide stream assessments in South Dakota. During 2001-2003, the USGS and GF&P completed another 42 stream assessments bringing the total of randomly selected stream assessments within South Dakota to 64. In addition, 18 repeat assessments designed to meet established quality-assurance/quality-control requirements were completed at 12 of these 64 sites. During 2002-2004, the USGS in cooperation with GF&P completed stream assessments at 45 candidate reference sites. Thus, 109 sites had stream assessments completed in South Dakota for EMAP-West (2000-2004). Relatively early in the EMAP-West stream-assessment process, it became apparent that for some streams in south-central South Dakota, in-stream conditions varied considerably over relatively short distances of only a few miles. These changes appeared to be a result of geomorphic changes associated with changes in the underlying geology. For these streams, moving stream assessment sites short distances upstream or downstream had the potential to provide substantially different bioassessment data. In order to obtain a better understanding of how geology influences stream conditions, two streams located in south-central South Dakota were chosen for multiple stream sampling at sites located along their longitudinal profile at points where notable changes in geomorphology were observed. Subsequently, three sites on Bear-in-the-Lodge Creek and three sites on Black Pipe Creek were selected for multiple stream sampling using EMAP-West protocols so that more could be learned about geologic influences on stream conditions. Values for dissolved oxygen and specific conductance generally increased from upstream to downstream locations on Bear-in-the-Lodge Creek. Values for pH and water temperature generally decreased from upstream to downstream locations. Decreasing water temperature could be indicative of ground-water inflows. Values for dissolved oxygen, pH, and water temperature generally increased from upstream to downstream locations on Black Pipe Creek. The increase in temperature at the lower sites is a result of less dense riparian cover, and the warmer water also could account for the lower concentrations of dissolved oxygen found in the lower reaches of Black Pipe Creek. Values for specific conductance were more than three times greater at the lower site (1,342 microsiemens per centimeter (?S/cm)) than at the upper site (434 ?S/cm). The increase probably occurs when the stream transitions from contacting the underlying Ar

South Dakota↗

Occurrence, Distribution, Sources, and Trends of Elevated Chloride Concentrations in the Mississippi River Valley Alluvial Aquifer in Southeastern Arkansas

Water-quality data from approximately 2,500 sites were used to investigate the distribution of chloride concentrations in the Mississippi River Valley alluvial aquifer in southeastern Arkansas. The large volume and areal distribution of the data used for the investigation proved useful in delineating areas of elevated (greater than 100 milligrams per liter) chloride concentrations, assessing potential sources of saline water, and evaluating trends in chloride distribution and concentration over time. Irrigation water containing elevated chloride concentrations is associated with negative effects to rice and soybeans, two of the major crops in Arkansas, and a groundwater chloride concentration of 100 milligrams per liter is recommended as the upper limit for use on rice. As such, accurately delineating areas with high salinity ground water, defining potential sources of chloride, and documenting trends over time is important in assisting the agricultural community in water management. The distribution and range of chloride concentrations in the study area revealed distinct areas of elevated chloride concentrations. Area I includes an elongated, generally northwest-southeast trending band of moderately elevated chloride concentrations in the northern part of the study area. This band of elevated chloride concentrations is approximately 40 miles in length and varies from approximately 2 to 9 miles in width, with a maximum chloride concentration of 360 milligrams per liter. Area II is a narrow, north-south trending band of elevated chloride concentrations in the southern part of the study area, with a maximum chloride concentration of 1,639 milligrams per liter. A zone of chloride concentrations exceeding 200 milligrams per liter is approximately 25 miles in length and 5 to 6 miles in width. In Area I, low chloride concentrations in samples from wells completed in the alluvial aquifer next to the Arkansas River and in samples from the upper Claiborne aquifer, which underlies the alluvial aquifer, indicate that leakage from the river and upward flow of saline water in underlying aquifers are not likely sources for the saline water in the alluvial aquifer in Area I. A good comparison was noted for chloride concentrations in Area I and surface geomorphology. In the majority of cases, elevated chloride concentrations occurred in backswamp deposits, with low concentrations (less than 50 milligrams per liter) in areas of active or abandoned channel deposits. The fine-grained, clay-rich deposits associated with backswamp areas likely restrict recharge, induce increased ratios between evapotranspiration and recharge, and experience minimal flushing of salts concentrated during evapotranspiration. In Area II, chloride isoconcentration maps of the underlying upper Claiborne aquifer, in addition to samples from wells completed in the middle and lower Claiborne aquifers, showed a similar chloride distribution to that of the alluvial aquifer with decreasing chloride concentrations to the east of the zone of elevated chloride concentrations, which suggests a deeper source of saline water that affects Tertiary and Quaternary aquifer systems. Mixing curves developed from bromide/chloride ratios in water samples from the alluvial aquifer, Tertiary aquifers, and samples of brine water from the Jurrasic Smackover Formation additionally discounted upward flow of saline water from underlying Tertiary formations as a potential mechanism for salinity in the alluvial aquifer in Area II. A review of information on oil exploration wells in Chicot County revealed that most of these wells were drilled from 1960 to 1980, after the elevated chloride concentrations were detected in the early 1950s. The elongated nature of the zone of elevated chloride concentrations in Area II suggests a line source or linear conduit connection with the source. Maps of a fractured limestone in the Smackover Formation in Arkansas, Mississippi, and Louisiana for purpose

Scientific Investigations Report↗

Assessment of Eutrophication in the Lower Yakima River Basin, Washington, 2004-07

In response to concerns that excessive plant growth in the lower Yakima River in south-central Washington was degrading water quality and affecting recreational use, the U.S. Geological Survey and the South Yakima Conservation District conducted an assessment of eutrophication in the lower 116 miles of the river during the 2004-07 irrigation seasons (March - October). The lower Yakima River was divided into three distinct reaches based on geomorphology, habitat, aquatic plant and water-quality conditions. The Zillah reach extended from the upstream edge of the study area at river mile (RM) 116 to RM 72, and had abundant periphyton growth and sparse macrophyte growth, the lowest nutrient concentrations, and moderately severe summer dissolved oxygen and pH conditions in 2005. The Mabton reach extended from RM 72 to RM 47, and had sparse periphyton and macrophyte growth, the highest nutrient conditions, but the least severe summer dissolved oxygen and pH conditions in 2005. The Kiona reach extended from RM 47 to RM 4, and had abundant macrophyte and epiphytic algae growth, relatively high nutrient concentrations, and the most severe summer dissolved oxygen and pH conditions in 2005. Nutrient concentrations in the lower Yakima River were high enough at certain times and locations during the irrigation seasons during 2004-07 to support the abundant growth of periphytic algae and macrophytes. The metabolism associated with this aquatic plant growth caused large daily fluctuations in dissolved oxygen concentrations and pH levels that exceeded the Washington State water-quality standards for these parameters between July and September during all 4 years, but also during other months when streamflow was unusually low. The daily minimum dissolved oxygen concentration was strongly and negatively related to the preceding day's maximum water temperature - information that could prove useful if a dissolved oxygen predictive model is developed for the lower Yakima River. Periphytic algal growth generally was not nutrient-limited and frequently reached nuisance levels in the Zillah reach, where some surface-water nutrient concentrations were below the reference concentrations suggested by the U.S. Environmental Protection Agency. Although lowering nutrient concentrations in this reach might limit periphytic algal growth enough to improve dissolved oxygen and pH conditions, ground water inflow at some locations might still provide an adequate supply of nutrients for periphytic algal growth. Macrophyte growth in the Kiona reach was dominated by water stargrass (Heteranthera dubia), was far greater compared to the other two reaches, varied greatly between years, and was negatively related to greater spring runoff due to lower light availability. Lowering nutrient concentrations in the Kiona reach might not impact the level of macrophyte growth because macrophytes with extensive root systems such as water stargrass can get nutrients from river sediment. In addition, the results from this study did not indicate any nutrient uptake by the macrophytes from the water column (nutrient uptake from the sediment was not examined). Creating the prolonged turbid and deep conditions during spring necessary to suppress macrophyte growth in this reach would not be possible in years with low streamflow. In addition, because of the relatively stable substrate present in much of this reach, the macrophyte root systems would likely not be disturbed under all but the most extremely high streamflows that occur in the lower Yakima River.

Scientific Investigations Report↗

Assessment of Local Recharge Area Characteristics of Four Caves in Northern Arkansas and Northeastern Oklahoma, 2004-07

A study was conducted from 2004 to 2007 by the U.S. Geological Survey in cooperation with the U.S. Fish and Wildlife Service to assess the characteristics of the local recharge areas of four caves in northern Arkansas and northeastern Oklahoma that provide habitat for a number of unique organisms. Characterization of the local recharge areas are important because the caves occur in a predominately karst system and because land use proximal to the caves, including areas suspected to lie within the local recharge areas, may include activities with potentially deleterious effects to cave water quality. An integrated approach was used to determine the hydrogeologic characteristics and the extent of the local recharge areas of Civil War Cave, January-Stansbury Cave, Nesbitt Spring Cave, and Wasson's Mud Cave. This approach incorporated methods of hydrology, structural geology, geomorphology, and geochemistry. Continuous water-level and water-temperature data were collected at each cave for various periods to determine recharge characteristics. Field investigations were conducted to determine surficial controls affecting the groundwater flow and connections of the groundwater system to land-surface processes in each study area. Qualitative groundwater tracing also was conducted at each cave to help define the local recharge areas. These independent methods of investigation provided multiple lines of evidence for effectively describing the behavior of these complex hydrologic systems. Civil War Cave is located near the city of Bentonville in Benton County, Arkansas, and provides habitat for the Ozark cavefish. Civil War Cave is developed entirely within the epikarst of the upper Boone Formation, and recharge to Civil War Cave occurs from the Boone Formation (Springfield Plateau aquifer). The daily mean discharge for the period of study was 0.59 cubic feet per second and ranged from 0.19 to 2.8 cubic feet per second. The mean water temperature for Civil War Cave was 14.0 degrees Celsius. The calculated recharge area for Civil War Cave ranged from 0.13 to 2.5 square miles using the water-balance equation to 3.80 square miles using a normalized base-flow method. Tracer tests indicated a portion of the water within Civil War Cave was from across a major topographic divide located to the southwest. January-Stansbury Cave is located in Delaware County in northeastern Oklahoma, and provides habitat for the Oklahoma cave crayfish and the Ozark cavefish. January-Stansbury Cave is developed in the St. Joe Limestone member of the Boone Formation. The daily mean discharge for the period of study was 1.0 cubic foot per second and ranged from 0.35 to 8.7 cubic feet per second. The mean water temperature for January-Stansbury Cave was 14.3 degrees. The calculated recharge area for January-Stansbury Cave using the water-balance equation ranged from approximately 0.04 to 0.83 square miles. Tracer tests generally showed water discharging from January-Stansbury Cave during high flow originates from within the topographic drainage area and from an area outside the topographic drainage area to the southwest. Nesbitt Spring Cave is located near the city of Mountain View in north-central Arkansas and provides habitat for the Hell Creek cave crayfish. Nesbitt Spring Cave is developed in the Plattin Limestone (Ozark aquifer) and is recharged through the Boone Formation (Springfield Plateau aquifer). The mean daily discharge for the period of study was 4.5 cubic feet per second and ranged from 0.39 to 70.7 cubic feet per second. The mean water temperature for Nesbitt Spring Cave was 14.2 degrees Celsius. The calculated recharge area for Nesbitt Spring Cave using the water-balance equation ranged from 0.49 square mile to 4.0 square miles. Tracer tests generally showed a portion of water discharging from Nesbitt Spring during high flow originates from outside the topographic drainage area. Wasson's Mud Cave is located near the city of Springtown

Scientific Investigations Report↗

Assessment of Lower Missouri River physical aquatic habitat and its use by adult sturgeon ( Genus Scaphirhynchus ), 2005-07

This report presents an exploratory analysis of habitat availability and use by adult Scaphirhynchus sturgeon on the Lower Missouri River from Gavins Point Dam, South Dakota, to the junction with the Mississippi River. The analysis is based on two main data sources collected from 2005 to 2007: (1) a compilation of 153 reach-scale habitat maps (mean reach length, 2.4 kilometers) derived from boat-collected hydroacoustic data and (2) a sturgeon location dataset from which 378 sturgeon telemetry locations are associated with the maps (within 7 days of the mapping and within 10 percent of the discharge). The report focuses on: (1) longitudinal patterns of geomorphic and hydraulic characteristics revealed by the collection of reach maps; (2) assessment of environmental characteristics at sturgeon locations in the context of the mapped reaches; and (3) consideration of spatial distribution of habitat conditions that sturgeon appear to select. Longitudinal patterns of geomorphology, hydraulics, and associated habitats relate strongly to the engineered state of the river. Reaches within each of the following river sections tended to share similar geomorphic, hydrologic, and hydraulic characteristics: the Minimally Engineered section (Gavins Point Dam to Sioux City, Iowa), the Upstream Channelized section (Sioux City, Iowa, to the junction with the Kansas River), and the Downstream Channelized section (Kansas River to the junction with the Mississippi River). Adult sturgeon occupy nearly the full range of available values for each continuous variable assessed: depth, depth slope, depth-averaged velocity, velocity gradient, and Froude number (a dimensionless number relating velocity to depth). However, in the context of habitat available in a reach, sturgeon tend to select some areas over others. Reproductive female shovelnose sturgeon (Scaphirhynchus platorynchus), in particular, were often found in parts of the reach with one or more of the following characteristics: high velocity gradient, high depth slope, low Froude number, and low (though not necessarily the lowest) depth-averaged velocity. Depths used by sturgeon varied considerably. We explored spatial patterns representing the variable ranges that reproductive female shovelnose sturgeon most strongly and consistently selected by mapping areas within reaches meeting the following criteria: greater than the 80th percentile of depth slope, greater than the 80th percentile of velocity gradient, and less than the 20th percentile of Froude number. Our data exploration indicates that areas meeting these criteria have some predictive value regarding sturgeon habitat selection. Of all sturgeon locations that fall on maps from the same year (sample size = 2,013), about 63 percent fall within about 35 percent of the area where at least one variable meets the above criteria and 18 percent of locations fall within 4 percent of the area where all three variables meet the above criteria. The spatial patterns of these mapped areas show distinct differences among the sections of the Lower Missouri River. For example, the areas of predicted selection exhibit a relatively complex mosaic with multiple interconnected pathways in reaches of the Minimally Engineered section. In contrast, areas of predicted selection are concentrated along the channel margins in reaches of the Upstream Channelized section. Because the patterns described in this report represent habitat use in the context of the available habitat in a highly altered river system, selection may not necessarily indicate preferred habitats or habitats sufficient for reproduction and survival of sturgeon species.

Scientific Investigations Report↗

Navigability potential of Washington rivers and streams determined with hydraulic geometry and a geographic information system

Using discharge and channel geometry measurements from U.S. Geological Survey streamflow-gaging stations and data from a geographic information system, regression relations were derived to predict river depth, top width, and bottom width as a function of mean annual discharge for rivers in the State of Washington. A new technique also was proposed to determine bottom width in channels, a parameter that has received relatively little attention in the geomorphology literature. These regression equations, when combined with estimates of mean annual discharge available in the National Hydrography Dataset, enabled the prediction of hydraulic geometry for any stream or river in the State of Washington. Predictions of hydraulic geometry can then be compared to thresholds established by the Washington State Department of Natural Resources to determine navigability potential of rivers. Rivers with a mean annual discharge of 1,660 cubic feet per second or greater are 'probably navigable' and rivers with a mean annual discharge of 360 cubic feet per second or less are 'probably not navigable'. Variance in the dataset, however, leads to a relatively wide range of prediction intervals. For example, although the predicted hydraulic depth at a mean annual discharge of 1,660 cubic feet per second is 3.5 feet, 90-percent prediction intervals indicate that the actual hydraulic depth may range from 1.8 to 7.0 feet. This methodology does not determine navigability - a legal concept determined by federal common law - instead, this methodology is a tool for predicting channel depth, top width, and bottom width for rivers and streams in Washington.

Washington↗

Estimates of Sediment Load Prior to Dam Removal in the Elwha River, Clallam County, Washington

Years after the removal of the two dams on the Elwha River, the geomorphology and habitat of the lower river will be substantially influenced by the sediment load of the free-flowing river. To estimate the suspended-sediment load prior to removal of the dams, the U.S. Geological Survey collected suspended-sediment samples during water years 2006 and 2007 at streamflow-gaging stations on the Elwha River upstream of Lake Mills and downstream of Glines Canyon Dam at McDonald Bridge. At the gaging station upstream of Lake Mills, discrete samples of suspended sediment were collected over a range of streamflows including a large peak in November 2006 when suspended-sediment concentrations exceeded 7,000 milligrams per liter, the highest concentrations recorded on the river. Based on field measurements in this study and from previous years, regression equations were developed for estimating suspended-sediment and bedload discharge as a function of streamflow. Using a flow duration approach, the average total annual sediment load at the gaging station upstream of Lake Mills was estimated at 327,000 megagrams with a range of uncertainty of +57 to -34 percent (217,000-513,000 megagrams) at the 95 percent confidence level; 77 percent of the total was suspended-sediment load and 23 percent was bedload. At the McDonald Bridge gaging station, daily suspended-sediment samples were obtained using an automated pump sampler, and concentrations were combined with the record of streamflow to calculate daily, monthly, and annual suspended-sediment loads. In water year 2006, an annual suspended-sediment load of 49,300 megagrams was determined at the gaging station at McDonald Bridge, and a load of 186,000 megagrams was determined upstream at the gaging station upstream of Lake Mills. In water year 2007, the suspended-sediment load was 75,200 megagrams at McDonald Bridge and 233,000 megagrams upstream of Lake Mills. The large difference between suspended-sediment loads at both gaging stations shows the extent of sediment trapping by Lake Mills, and a trap efficiency of 0.86 was determined for the reservoir. Pre-dam-removal estimates of suspended-sediment load and sediment-discharge relations will help planners monitor geomorphic and habitat changes in the river as it reaches a dynamic equilibrium following the removal of dams.

Scientific Investigations Report↗

Sediment Loading from Crab Creek and Other Sources to Moses Lake, Washington, 2007 and 2008

The average sediment-accumulation rate on the bed of Moses Lake since 1980, based on the identification of Mount St. Helens ash in lakebed cores, was 0.24 inches per year. Summed over the lake surface area, the average sediment-accumulation rate on the lakebed is 190,000 tons per year. Based on USGS stream-gaging station data, the average annual sediment load to Moses Lake from Crab Creek was 32,000 tons per year between 1943 and 2008; the post Mount St. Helens eruption annual load from Crab Creek was calculated to be 13,000 tons per year. The total mass input from Crab Creek and other fluvially derived sediment sources since 1980 has been about 20,000 tons per year. Eolian sediment loading to Moses Lake was about 50,000 tons per year before irrigation and land-use development largely stabilized the Moses Lake dune field. Currently, eolian input to the lake is less than 2,000 tons per year. Considering all sediment sources to the lake, most (from 80 to 90 percent) of post-1980 lakebed-sediment accumulation is from autochthonous, or locally formed, mineral matter, including diatom frustuals and carbonate shells, derived from biogenic production in phytoplankton and zooplankton. Suspended-sediment samples collected from Crab Creek and similar nearby waterways in 2007 and 2008 combined with other USGS data from the region indicated that a proposed Bureau of Reclamation supplemental feed of as much as 650 cubic feet per second through Crab Creek might initially contain a sediment load of as much as 1,500 tons per day. With time, however, this sediment load would decrease to about 10 tons per day in the sediment-supply-limited creek as available sediment in the channel is depleted. Sediment loads in the supplemental feed ultimately would be similar to loads in other bypass canals near Moses Lake. Considering the hydrology and geomorphology of the creek over multiple years, there is little evidence that the proposed supplemental feed would substantially increase the overall sediment load from Crab Creek to Moses Lake relative to natural, background conditions. Because Moses Lake is relatively shallow and subject to significant wind-driven circulation currents, mixing also would redistribute some of the fluvial sediment load deposited from Crab Creek throughout Parker Horn and the rest of Moses Lake, further mitigating the local effect of Crab Creek sedimentation near the City of Moses Lake.

Scientific Investigations Report↗

Development of a channel classification to evaluate potential for cottonwood restoration, lower segments of the Middle Missouri River, South Dakota and Nebraska

This report documents development of a spatially explicit river and flood-plain classification to evaluate potential for cottonwood restoration along the Sharpe and Fort Randall segments of the Middle Missouri River. This project involved evaluating existing topographic, water-surface elevation, and soils data to determine if they were sufficient to create a classification similar to the Land Capability Potential Index (LCPI) developed by Jacobson and others (U.S. Geological Survey Scientific Investigations Report 2007–5256) and developing a geomorphically based classification to apply to evaluating restoration potential. Existing topographic, water-surface elevation, and soils data for the Middle Missouri River were not sufficient to replicate the LCPI. The 1/3-arc-second National Elevation Dataset delineated most of the topographic complexity and produced cumulative frequency distributions similar to a high-resolution 5-meter topographic dataset developed for the Lower Missouri River. However, lack of bathymetry in the National Elevation Dataset produces a potentially critical bias in evaluation of frequently flooded surfaces close to the river. High-resolution soils data alone were insufficient to replace the information content of the LCPI. In test reaches in the Lower Missouri River, soil drainage classes from the Soil Survey Geographic Database database correctly classified 0.8–98.9 percent of the flood-plain area at or below the 5-year return interval flood stage depending on state of channel incision; on average for river miles 423–811, soil drainage class correctly classified only 30.2 percent of the flood-plain area at or below the 5-year return interval flood stage. Lack of congruence between soil characteristics and present-day hydrology results from relatively rapid incision and aggradation of segments of the Missouri River resulting from impoundments and engineering. The most sparsely available data in the Middle Missouri River were water-surface elevations. Whereas hydraulically modeled water-surface elevations were available at 1.6-kilometer intervals in the Lower Missouri River, water-surface elevations in the Middle Missouri River had to be interpolated between streamflow-gaging stations spaced 3–116 kilometers. Lack of high-resolution water-surface elevation data precludes development of LCPI-like classification maps. An hierarchical river classification framework is proposed to provide structure for a multiscale river classification. The segment-scale classification presented in this report is deductive and based on presumed effects of dams, significant tributaries, and geological (and engineered) channel constraints. An inductive reach-scale classification, nested within the segment scale, is based on multivariate statistical clustering of geomorphic data collected at 500-meter intervals along the river. Cluster-based classifications delineate reaches of the river with similar channel and flood-plain geomorphology, and presumably, similar geomorphic and hydrologic processes. The dominant variables in the clustering process were channel width (Fort Randall) and valley width (Sharpe), followed by braiding index (both segments). Clusters with multithread and highly sinuous channels are likely to be associated with dynamic channel migration and deposition of fresh, bare sediment conducive to natural cottonwood germination. However, restoration potential within these reaches is likely to be mitigated by interaction of cottonwood life stages with the highly altered flow regime.

Scientific Investigations Report↗

Effects of recreational flow releases on natural resources of the Indian and Hudson Rivers in the Central Adirondack Mountains, New York, 2004-06

The U.S. Geological Survey (USGS), the New York State Department of Environmental Conservation (NYSDEC), and Cornell University carried out a cooperative 2-year study from the fall of 2004 through the fall of 2006 to characterize the potential effects of recreational-flow releases from Lake Abanakee on natural resources in the Indian and Hudson Rivers. Researchers gathered baseline information on hydrology, temperature, habitat, nearshore wetlands, and macroinvertebrate and fish communities and assessed the behavior and thermoregulation of stocked brown trout in study reaches from both rivers and from a control river. The effects of recreational-flow releases (releases) were assessed by comparing data from affected reaches with data from the same reaches during nonrelease days, control reaches in a nearby run-of-the-river system (the Cedar River), and one reach in the Hudson River upstream from the confluence with the Indian River. A streamgage downstream from Lake Abanakee transmitted data by satellite from November 2004 to November 2006; these data were used as the basis for developing a rating curve that was used to estimate discharges for the study period. River habitat at most study reaches was delineated by using Global Positioning System and ArcMap software on a handheld computer, and wetlands were mapped by ground-based measurements of length, width, and areal density. River temperature in the Indian and Hudson Rivers was monitored continuously at eight sites during June through September of 2005 and 2006; temperature was mapped in 2005 by remote imaging made possible through collaboration with the Rochester Institute of Technology. Fish communities at all study reaches were surveyed and characterized through quantitative, nearshore electrofishing surveys. Macroinvertebrate communities in all study reaches were sampled using the traveling-kick method and characterized using standard indices. Radio telemetry was used to track the movement and persistence of stocked brown trout (implanted with temperature-sensitive transmitters) in the Indian and Hudson Rivers during the summer of 2005 and in all three rivers during the summer of 2006. The releases had little effect on river temperatures, but increased discharges by about one order of magnitude. Regardless of the releases, river temperatures at all study sites commonly exceeded the threshold known to be stressful to brown trout. At most sites, mean and median water temperatures on release days were not significantly different, or slightly lower, than water temperatures on nonrelease days. Most differences were very small and, thus, were probably not biologically meaningful. The releases generally increased the total surface area of fast-water habitat (rapids, runs, and riffles) and decreased the total surface area of slow-water habitat (pools, glides, backwater areas, and side channels). The total surface areas of wetlands bordering the Indian River were substantially smaller than the surface areas bordering the Cedar River; however, no channel geomorphology or watershed soil and topographic data were assessed to determine whether the releases or other factors were mainly responsible for observed differences. Results from surveys of resident biota indicate that the releases generally had a limited effect on fish and macroinvertebrate communities in the Indian River and had no effect on communities in the Hudson River. Compared to fish data from Cedar River control sites, the impoundment appeared to reduce total density, biomass, and richness in the Indian River at the first site downstream from Lake Abanakee, moderately reduce the indexes at the other two sites on the Indian River, and slightly reduce the indexes at the first Hudson River site downstream from the confluence with the Indian River. The densities of individual fish populations at all Indian River sites were also reduced, but related effects on fish populations in the Hudson River were less evident. Altho

Scientific Investigations Report↗

Characterization of geomorphic units in the alluvial valleys and channels of Gulf Coastal Plain rivers in Texas, with examples from the Brazos, Sabine, and Trinity Rivers, 2010

The U.S. Geological Survey, in cooperation with the Texas Water Development Board, described and characterized examples of geomorphic units within the channels and alluvial valleys of Texas Gulf Coastal Plain rivers using a geomorphic unit classification scale that differentiates geomorphic units on the basis of their location either outside or inside the river channel. The geomorphic properties of a river system determine the distribution and type of potential habitat both within and adjacent to the channel. This report characterizes the geomorphic units contained in the river channels and alluvial valleys of Texas Gulf Coastal Plain rivers in the context of the River Styles framework. This report is intended to help Texas Instream Flow Program practitioners, river managers, ecologists and biologists, and others interested in the geomorphology and the physical processes of the rivers of the Texas Gulf Coastal Plain (1) gain insights into how geomorphic units develop and adjust spatially and temporally, and (2) be able to recognize common geomorphic units from the examples cataloged in this report. Recent aerial imagery (high-resolution digital orthoimagery) collected in 2008 and 2009 were inspected by using geographic information system software to identify representative examples of the types of geomorphic units that occurred in the study area. Geomorphic units outside the channels of Texas Gulf Coastal Plain rivers are called \"valley geomorphic units\" in this report. Valley geomorphic units for the Texas Gulf Coastal Plain rivers described in this report are terraces, flood plains, crevasses and crevasse splays, flood-plain depressions, tie channels, tributaries, paleochannels, anabranches, distributaries, natural levees, neck cutoffs, oxbow lakes, and constructed channels. Channel geomorphic units occur in the river channel and are subject to frequent stresses associated with flowing water and sediment transport; they adjust (change) relatively quickly in response to short-term variations in flow. Channel geomorphic units described in this report are channel banks, benches and ledges, bank failures, point bars, cross-bar channels, channel bars, exposed bedrock, pools, runs, and crossovers.

Texas↗

Coastal habitats of the Elwha River, Washington- Biological and physical patterns and processes prior to dam removal

This report includes chapters that summarize the results of multidisciplinary studies to quantify and characterize the current (2011) status and baseline conditions of the lower Elwha River, its estuary, and the adjacent nearshore ecosystems prior to the historic removal of two long-standing dams that have strongly influenced river, estuary, and nearshore conditions. The studies were conducted as part of the U.S. Geological Survey Multi-disciplinary Coastal Habitats in Puget Sound (MD-CHIPS) project. Chapter 1 is the introductory chapter that provides background and a historical context for the Elwha River dam removal and ecosystem restoration project. In chapter 2, the volume and timing of sediment delivery to the estuary and nearshore are discussed, providing an overview of the sediment stored in the two reservoirs and the expected erosion mechanics of the reservoir sediment deposits after removal of the dams. Chapter 3 describes the geological background of the Olympic Peninsula and the geomorphology of the Elwha River and nearshore. Chapter 4 details a series of hydrological data collected by the MD-CHIPS Elwha project. These include groundwater monitoring, surface water-groundwater interactions in the estuary, an estimated surface-water budget to the estuary, and a series of temperature and salinity measurements. Chapter 5 details the work that has been completed in the nearshore, including the measurement of waves, tides, and currents; the development of a numerical hydrodynamic model; and a description of the freshwater plume entering the Strait of Juan de Fuca. Chapter 6 includes a characterization of the nearshore benthic substrate developed using sonar, which formed a habitat template used to design scuba surveys of the benthic biological communities. Chapter 7 describes the ecological studies conducted in the lower river and estuary and includes characterization of juvenile salmon diets and seasonal estuary utilization patterns using otolith analysis to determine habitat specific and hatchery compared with wild patterns in juvenile Chinook salmon, assessment of benthic and terrestrial macroinvertebrate communities, and seasonal patterns of water nutrients. In Chapter 8, the vegetation communities of the eastern estuary are characterized by mapped vegetation cover types and samples collected for vegetation composition and diversity. Chapter 9 summarizes the existing conditions of the study area as detailed in this report and describes some of the possible outcomes of river restoration on the coastal ecosystems of the Elwha River. Together, these different scientific perspectives form a basis for understanding the Elwha River ecosystem, an environment that has and will undergo substantial change. A century of change began with the start of dam construction in 1910; additional major change will result from dam removal scheduled to begin in September 2011. This report provides a scientific snapshot of the lower Elwha River, its estuary, and adjacent nearshore ecosystems prior to dam removal that can be used to evaluate the responses and dynamics of various system components following dam removal.

Scientific Investigations Report↗

Coastal and lower Elwha River, Washington, prior to dam removal--history, status, and defining characteristics: Chapter 1 in Coastal habitats of the Elwha River, Washington--biological and physical patterns and processes prior to dam removal

Characterizing the physical and biological characteristics of the lower Elwha River, its estuary, and adjacent nearshore habitats prior to dam removal is essential to monitor changes to these areas during and following the historic dam-removal project set to begin in September 2011. Based on the size of the two hydroelectric projects and the amount of sediment that will be released, the Elwha River in Washington State will be home to the largest river restoration through dam removal attempted in the United States. Built in 1912 and 1927, respectively, the Elwha and Glines Canyon Dams have altered key physical and biological characteristics of the Elwha River. Once abundant salmon populations, consisting of all five species of Pacific salmon, are restricted to the lower 7.8 river kilometers downstream of Elwha Dam and are currently in low numbers. Dam removal will reopen access to more than 140 km of mainstem, flood plain, and tributary habitat, most of which is protected within Olympic National Park. The high capture rate of river-borne sediments by the two reservoirs has changed the geomorphology of the riverbed downstream of the dams. Mobilization and downstream transport of these accumulated reservoir sediments during and following dam removal will significantly change downstream river reaches, the estuary complex, and the nearshore environment. To introduce the more detailed studies that follow in this report, we summarize many of the key aspects of the Elwha River ecosystem including a regional and historical context for this unprecedented project.

Washington↗

Bathymetric and underwater video survey of Lower Granite Reservoir and vicinity, Washington and Idaho, 2009-10

The U.S. Geological Survey conducted a bathymetric survey of the Lower Granite Reservoir, Washington, using a multibeam echosounder, and an underwater video mapping survey during autumn 2009 and winter 2010. The surveys were conducted as part of the U.S. Army Corps of Engineer's study on sediment deposition and control in the reservoir. The multibeam echosounder survey was performed in 1-mile increments between river mile (RM) 130 and 142 on the Snake River, and between RM 0 and 2 on the Clearwater River. The result of the survey is a digital elevation dataset in ASCII coordinate positioning data (easting, northing, and elevation) useful in rendering a 3×3-foot point grid showing bed elevation and reservoir geomorphology. The underwater video mapping survey was conducted from RM 107.73 to 141.78 on the Snake River and RM 0 to 1.66 on the Clearwater River, along 61 U.S. Army Corps of Engineers established cross sections, and dredge material deposit transects. More than 900 videos and 90 bank photographs were used to characterize the sediment facies and ground-truth the multibeam echosounder data. Combined, the surveys were used to create a surficial sediment facies map that displays type of substrate, level of embeddedness, and presence of silt.

Washington;Idaho↗

Topographic change detection at select archeological sites in Grand Canyon National Park, Arizona, 2007-2010

Human occupation in Grand Canyon, Arizona, dates from at least 11,000 years before present to the modern era. For most of this period, the only evidence of human occupation in this iconic landscape is provided by archeological sites. Because of the dynamic nature of this environment, many archeological sites are subject to relatively rapid topographic change. Quantifying the extent, magnitude, and cause of such change is important for monitoring and managing these archeological sites. Such quantification is necessary to help inform the continuing debate on whether and how controlled releases from Glen Canyon Dam, located immediately upstream of Grand Canyon National Park, are affecting site erosion rates, artifact transport, and archeological resource preservation along the Colorado River in Grand Canyon. Although long-term topographic change resulting from a variety of natural processes is inherent in the Grand Canyon region, continued erosion of archeological sites threatens both the archeological resources and our future ability to study evidence of past cultural habitation. Thus, this subject is of considerable interest to National Park Service managers and other stakeholders in the Glen Canyon Dam Adaptive Management Program. Understanding the causes and effects of archeological site erosion requires a knowledge of several factors, including the location, timing, and magnitude of the changes occurring in relation to archeological resources, the rates of change, and the relative contribution of potential causes. These potential causes include sediment depletion associated with managed flows from Glen Canyon Dam, site-specific weather and overland flow patterns, visitor impacts, and long-term regional climate change. To obtain this information, highly accurate, spatially specific data are needed from sites undergoing change. Using terrestrial lidar techniques, and building upon three previous surveys of archeological sites performed in 2006 and 2007, we collected two new datasets in April and September 2010 and processed and improved upon existing methods to generate high-accuracy (3 to 5 cm vertical change threshold) topographic change-detection maps for 10 survey areas encompassing 9 archeological sites along the Colorado River corridor. We also used terrestrial lidar techniques to investigate several other metrics for studying archeological site stability, including monitoring cultural structures and artifacts and remotely measuring cryptobiotic soil crust areas. Our topographic change results indicate that 9 of 10 survey areas showed signs of either erosion, deposition, or both during the 2007–2010 time interval and that these changes can be linked to a variety of geomorphic processes, primarily overland flow gullying and aeolian sand transport. In several cases, large (>50 cm) vertical change occurred, and in one case, more than 100 m 3 of sediment was eroded. Further, for all sites monitored throughout the river corridor during this time period, the overall signal was related to erosion rather than deposition. These results highlight the potential for rapid archeological site change in Grand Canyon. Whereas the topographic change results presented herein provide the highest level of change detection yet performed on entire archeological sites in Grand Canyon, additional work in combining these results with site-specific weather, hydrology, and geomorphology data is needed to provide a more thorough understanding of the causes of the documented topographic changes. Linking lidar-derived measurements of topographic changes with these other data sources should provide land managers with a scientific basis for making management decisions regarding archeological resources in Grand Canyon National Park and assist in answering open questions regarding the influence that sediment-depleted flows from Glen Canyon Dam have on archeological site stability.

Arizona↗

Emergent sandbar dynamics in the lower Platte River in eastern Nebraska: methods and results of pilot study, 2011

The lower Platte River corridor provides important habitats for two State- and federally listed bird species: the interior least tern (terns; Sternula antillarum athallassos) and the piping plover (plovers; Charadrius melodus). However, many of the natural morphological and hydrological characteristics of the Platte River have been altered substantially by water development, channelization, hydropower operations, and invasive vegetation encroachment, which have decreased the abundance of high-quality nesting and foraging habitat for terns and plovers. The lower Platte River (LPR), defined as 103 miles (mi) of the Platte River between its confluence with the Loup River and its confluence with the Missouri River, has narrowed since the late-19th and early-20th centuries, yet it partially retains many geomorphologic and hydrologic characteristics important to terns and plovers. These birds nest on the sandbars in the river and along shorelines at sand- and gravel-pit lakes in the adjacent valley. The need to balance continued economic, infrastructure, and resource development with the conservation of important physical and aquatic habitat resources requires increased understanding of the physical and biological dynamics of the lower Platte River. Spatially and temporally rich datasets for emergent sandbar habitats are necessary to quantify emergent sandbar dynamics relative to hypothesized controls and stressors. In cooperation with the Lower Platte South Natural Resources District, the U.S. Geological Survey initiated a pilot study of emergent sandbar dynamics along a 22-mi segment of the LPR downstream from its confluence with Salt Creek, near Ashland, Nebraska. The purposes of the study were to: (1) develop methods to rapidly assess sandbar geometries and locations in a wide, sand-bed river, and (2) apply and validate the method to assess emergent sandbar dynamics over three seasons in 2011. An examination of the height of sandbars relative to the local stage of the formative discharge event, and how subsequent river discharges, of both high and low magnitude, alter sandbar geometries and abundance within the LPR was of particular interest. A “rapid-assessment” method was developed with the goal of characterizing the spatial distribution and habitat-relevant geometries of the complete population of sandbars along the study segment. Three primary measures were used to assess emergent sandbar dynamics in the study segment: sandbar area, sandbar height, and sandbar location. Data to derive these measures were collected during three, week-long survey periods in 2011, herein named “spring survey period,” “summer survey period,” and “fall survey period.” Emergent sandbars were grouped into one of three generalized types: (1) bank-attached, (2) island-attached, and (3) mid-channel.

Nebraska↗

Lithology, hydrologic characteristics, and water quality of the Arkansas River Valley alluvial aquifer in the vicinity of Van Buren, Arkansas

A study to assess the potential of the Arkansas River Valley alluvial aquifer in the vicinity of Van Buren, Arkansas, as a viable source of public-supply water was conducted by the U.S. Geological Survey in cooperation with the Little Rock, District, U.S. Army Corps of Engineers. An important study component was to identify possible changes in hydrologic conditions following installation of James W. Trimble Lock and Dam 13 (December 1969) on the Arkansas River near the study area. Data were gathered for the study in regard to the lithology, hydrologic characteristics, and water quality of the aquifer. Lithologic information was obtained from drillers’ logs of wells drilled from 1957 through 1959. Water-quality samples were collected from 10 irrigation wells and analyzed for inorganic constituents and pesticides. To evaluate the potential viability of the alluvial aquifer in the Van Buren area, these data were compared to similar stratigraphic, lithologic, and groundwater-quality data from the Arkansas River Valley alluvial aquifer at Dardanelle, Ark., where the aquifer provides a proven, productive, sole-source of public-supply water. Drillers’ logs for 59 wells in the Van Buren study area revealed well depths ranging from 25 to 52 feet (ft), with a mean depth of 42 ft. The thickness of the lower sand/gravel interval serving as the water-producing zone ranged from 5 to 47 ft, with a mean thickness of 29 ft. The presence of gravel was noted in only 4 of 59 well logs available for review from the study area. Percent sand was calculated from well logs in the study area, and these sand percentages were overlain onto an orthophotograph map to examine the areal distribution of sand percentage in relation to geomorphologic features of the flood plain in the study area. The logs denoting the greatest percent sand tend to occur in areas near to the river and on the concave (point bar) side of abandoned channels, while the lower percent sand tends to occur on the convex (channel fill and backswamp deposits) side of the abandoned channels. Comparison of hydrographs from water levels collected between 1957 and 1972 to cumulative departure from mean monthly and mean annual precipitation showed overall good fit and explained the long-term decreasing water levels from the earliest period of record through October 1967, followed by a sharp rise in water levels concurrent with rises in cumulative departure from mean monthly and mean annual precipitation. Hydrographs for four wells ranging from 0.8 to 4.5 miles upstream from the dam and potentially affected by rising river stage were compared to graphs of river stage and cumulative departure from mean monthly precipitation. Water levels for these wells showed minimal discernible effect by rising river stage following dam completion. Periods of increased precipitation compared closely to increases in water level for all hydrographs, regardless of river stage, and periods of no precipitation resulted in declining water levels, although river stage continued to slowly rise during these same periods. The Arkansas River has greater salinity than local groundwater, providing a quantitative tracer for any groundwater recharge originating from the river. Comparison of predam and postdam groundwater-chloride concentrations showed no increase in chloride concentrations after dam installation, which is consistent with hydrologic data. These data suggest that the dominant source of groundwater recharge in the Arkansas River Valley alluvial aquifer is infiltration of precipitation through proximal, coarse channel deposits, with minimal influx of river water. Groundwater-quality data collected from 10 wells in the study area indicated a calcium-bicarbonate water type. No primary drinking-water standards were exceeded for any constituents, and iron and manganese were the only constituents exceeding secondary drinking-water regulations. Six of the 10 well-water samples were analyzed for the presence of pesticides, as row-crop agriculture is the dominant land use in the study area. Six herbicide compounds and one herbicide metabolite were detected at concentrations substantially below those of the Federal primary drinking-water standards and health advisories. The hydrologic and geochemical data gathered for this study provide a qualitative assessment of the potential of the Arkansas River Valley alluvial aquifer as a source of public water supply in the Van Buren area. Results indicate minimal influx of water from the Arkansas River, and recharge to the aquifer appears to be dominantly by infiltration of precipitation through overlying alluvium. If vertical wells are used as a source of public water supply, then several wells will have to be used in combination at relatively low pumping rates and placed in areas with a greater percent sand. Use of a horizontal well configuration near the river to increase production may depend on infiltration of river water to supplement water removed from storage, especially where areas of lower permeability sediments might be encountered within the surrounding alluvium. If a poor hydraulic connection exists between the river and the alluvium, as indicated by this study, then production will depend on ample precipitation and recharge throughout the year and groundwater storage sufficient to prevent declining water levels where pumping rates exceed recharge.

Arkansas↗