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USGS2016

Model description and evaluation of the mark-recapture survival model used to parameterize the 2012 status and threats analysis for the Florida manatee ( Trichechus manatus latirostris )

This report provides supporting details and evidence for the rationale, validity and efficacy of a new mark-recapture model, the Barker Robust Design, to estimate regional manatee survival rates used to parameterize several components of the 2012 version of the Manatee Core Biological Model (CBM) and Threats Analysis (TA). The CBM and TA provide scientific analyses on population viability of the Florida manatee subspecies ( Trichechus manatus latirostris ) for U.S. Fish and Wildlife Service’s 5-year reviews of the status of the species as listed under the Endangered Species Act. The model evaluation is presented in a standardized reporting framework, modified from the TRACE (TRAnsparent and Comprehensive model Evaluation) protocol first introduced for environmental threat analyses. We identify this new protocol as TRACE-MANATEE SURVIVAL and this model evaluation specifically as TRACE-MANATEE SURVIVAL, Barker RD version 1. The longer-term objectives of the manatee standard reporting format are to (1) communicate to resource managers consistent evaluation information over sequential modeling efforts; (2) build understanding and expertise on the structure and function of the models; (3) document changes in model structures and applications in response to evolving management objectives, new biological and ecological knowledge, and new statistical advances; and (4) provide greater transparency for management and research review.

Open-File Report↗

USGS2019

Relaxation response of critically stressed macroscale surficial rock sheets

Rock environments both underground and on Earth’s surface show indications of energetic macroscale fracture. In tunnels and excavations, these manifest as rockbursts—energetic explosions of rock that can damage engineering projects, and may pose ongoing financial and safety risk as rock stresses adjust during post-failure relaxation. In natural settings at the surface, evidence for rockbursts exist in the form of tent-like structures of ruptured exfoliation sheets, but few direct observations of such events exist, precluding the analysis of how natural rock formations may evolve after rupture. Here we investigate the post-failure evolution of a granitic rock dome following rapid fracture events (i.e., surficial rockbursts) that occurred in California, USA during 2014–2016. Building upon previous work that showed a thermal stress origin for the observed fracturing, we investigate the return to background stress conditions (i.e., stress relaxation) observed in both short- (week, month) and long-term (multi-year) rock deformation trends. Acoustic emissions, deformation, and environmental monitoring data indicate that partially detached rock sheets forming the surface of the dome undergo fracture aperture closing during cooling periods, concurrent with reduction of rock stress by the source of forcing (i.e., thermal stress). However, with sufficient critical and/or subcritical fracture, our observations also show that rock sheets can become decoupled from the source of stress, resulting in a long-term return to background stress conditions. Our results provide insight into the cyclic and likely ephemeral nature of rock fracture in surficial rock domes, as well as in underground rockburst environments.

Rock Mechanics and Rock Engineering↗

USGS2008

Dating groundwater with trifluoromethyl sulfurpentafluoride (SF 5CF3), sulfur hexafluoride (SF6), CF 3Cl (CFC-13), and CF2Cl2 (CFC-12)

[1] A new groundwater dating procedure using the transient atmospheric signal of the environmental tracers SF5CF3, CFC-13, SF6, and CFC-12 was developed. The analytical procedure determines concentrations of the four tracers in air and water samples. SF 5CF3 and CFC-13 can be used to date groundwaters in some environments where the CFCs and SF6 have previously failed because these new tracers have increasing atmospheric input functions, no known terrigenic source, and are believed to be stable under reducing conditions. SF5CF3 has a dating range from 1970 to modern; the mixing ratio (mole fraction) in North American air has increased from the detection limit of 0.005 parts per trillion (ppt) to the 2006 mole fraction of about 0.16 ppt. No evidence was found for degradation of SF5CF3 in laboratory anaerobic systems. The solubility of SF5CF3 was measured in water from 1 to 35??C. Groundwater samples that contained large amounts of terrigenic SF6 did not contain terrigenic SF 5CF3. CFC-13 is a trace atmospheric gas with a dating range in groundwater of about 1965 to modem. CFC-13 has been used primarily in very low-temperature refrigeration; thus groundwater environments are less likely to be contaminated with nonatmospheric sources as compared to other widely used CFCs. Because of the low solubility of SF5CF3 and CFC-13 in water, an excess air correction must be applied to the apparent ages. The new dating procedure was tested in water samples from wells and springs from Maryland, Virginia, and West Virginia.

Water Resources Research↗

USGS2011

Maintenance of phenotypic variation: Repeatability, heritability and size-dependent processes in a wild brook trout population

Phenotypic variation in body size can result from within-cohort variation in birth dates, among-individual growth variation and size-selective processes. We explore the relative effects of these processes on the maintenance of wide observed body size variation in stream-dwelling brook trout (Salvelinus fontinalis). Based on the analyses of multiple recaptures of individual fish, it appears that size distributions are largely determined by the maintenance of early size variation. We found no evidence for size-dependent compensatory growth (which would reduce size variation) and found no indication that size-dependent survival substantially influenced body size distributions. Depensatory growth (faster growth by larger individuals) reinforced early size variation, but was relatively strong only during the first sampling interval (age-0, fall). Maternal decisions on the timing and location of spawning could have a major influence on early, and as our results suggest, later (>age-0) size distributions. If this is the case, our estimates of heritability of body size (body length=0.25) will be dominated by processes that generate and maintain early size differences. As a result, evolutionary responses to environmental change that are mediated by body size may be largely expressed via changes in the timing and location of reproduction. Published 2011. This article is a US Government work and is in the public domain in the USA.

Evolutionary Applications↗

USGS2018

Human-associated indicator bacteria and human-specific viruses in surface water: a spatial assessment with implications on fate and transport

Hydrologic, seasonal, and spatial variability of sewage contamination was studied at six locations within a watershed upstream from water reclamation facility (WRF) effluent to define relative loadings of sewage from different portions of the watershed. Fecal pollution from human sources was spatially quantified by measuring two human-associated indicator bacteria (HIB) and eight human-specific viruses (HSV) at six stream locations in the Menomonee River watershed in Milwaukee, Wisconsin from April 2009 to March 2011. A custom, automated water sampler, which included HSV filtration, was deployed at each location providing unattended, flow-weighted, large-volume (30-913 L) sampling. In addition, wastewater influent samples were composited over discrete seven-day periods from the two Milwaukee WRFs. Of the eight HSV only three were detected, present in up to 38% of the 228 stream samples, while at least one HSV was detected in all WRF influent samples. HIB occurred more often with significantly higher concentrations than the HSV in stream and WRF influent samples (p<0.05). HSV yield calculations showed a loss from upstream to the most downstream sub-watershed of the Menomonee River, and in contrast, a positive HIB yield from this same sub-watershed emphasizes the complexity in fate and transport properties between HSV and HIB. This study demonstrates the utility of analyzing multiple HSV and HIB to provide a weight of evidence approach for assessment of fecal contamination at the watershed level, provides an assessment of relative loadings for prioritizing areas within a watershed, and demonstrates how loadings of HSV and HIB can be inconsistent, inferring potential differences in fate and transport between the two indicators of human fecal presence.

Wisconsin↗

USGS2019

Considerations for maximizing the adaptive potential of restored coral populations in the western Atlantic

Active coral restoration typically involves two interventions: crossing gametes to facilitate sexual larval propagation; and fragmenting, growing, and outplanting adult colonies to enhance asexual propagation. From an evolutionary perspective, the goal of these efforts is to establish self‐sustaining, sexually reproducing coral populations that have sufficient genetic and phenotypic variation to adapt to changing environments. Here, we provide concrete guidelines to help restoration practitioners meet this goal for most Caribbean species of interest. To enable the persistence of coral populations exposed to severe selection pressure from many stressors, a mixed provenance strategy is suggested: genetically unique colonies (genets) should be sourced both locally as well as from more distant, environmentally distinct sites. Sourcing three to four genets per reef along environmental gradients should be sufficient to capture a majority of intraspecies genetic diversity. It is best for practitioners to propagate genets with one or more phenotypic traits that are predicted to be valuable in the future, such as low partial mortality, high wound healing rate, high skeletal growth rate, bleaching resilience, infectious disease resilience, and high sexual reproductive output. Some effort should also be reserved for underperforming genets because colonies that grow poorly in nurseries sometimes thrive once returned to the reef and may harbor genetic variants with as yet unrecognized value. Outplants should be clustered in groups of four to six genets to enable successful fertilization upon maturation. Current evidence indicates that translocating genets among distant reefs is unlikely to be problematic from a population genetic perspective but will likely provide substantial adaptive benefits. Similarly, inbreeding depression is not a concern given that current practices only raise first‐generation offspring. Thus, proceeding with the proposed management strategies even in the absence of a detailed population genetic analysis of the focal species at sites targeted for restoration is the best course of action. These basic guidelines should help maximize the adaptive potential of reef‐building corals facing a rapidly changing environment.

Ecological Applications↗

USGS1994

Seagrasses, dredging and light in Laguna Madre, Texas, U.S.A.

Light reduction resulting from maintenance dredging was the suspected cause of large-scale loss of seagrass cover in deep parts of Laguna Madre between surveys conducted in 1965 and 1974. Additional changes to 1988, together with an analysis of dredging frequency and intensity for different parts of the laguna, were consistent with this interpretation. Intensive monitoring of the underwater light regime and compilation of detailed environmental data for 3 months before and 15 months after a dredging project in 1988 revealed reduced light attributable to dredging in four of eight subdivisions of the study area, including the most extensive seagrass meadow in the study area. Dredging effects were strongest close to disposal areas used during this project but still were detectable on transects >1·2 km from the nearest dredge disposal area. In the subdivision of the study area where most of the dredge disposal occurred, light attenuation was increased throughout the 15 months of observation after dredging. In the seagrass meadow and the transition zone at the outer edge of the meadow, effects were evident up to 10 months after dredging. Resuspension and dispersion events caused by wind-generated waves are responsible for the propagation of dredge-related turbidity over space and time in this system.

Texas↗

USGS2010

Submarine mass transport within Monterey Canyon: Benthic disturbance controls on the distribution of chemosynthetic biological communities

Documenting mass transport within Monterey Canyon and Fan has been a focus of remotely operated vehicle (ROV) observations, sampling, monitoring, and multibeam mapping studies. These efforts indicate that major mass transport events occur within upper Monterey Canyon (<2 km water depths) with a sub-annual recurrence frequency. However, 14 C-stratigraphies indicate that a sand carrying event has not penetrated through lower Monterey Canyon (>2 km water depths) and onto Monterey Fan for ~100 years. Simultaneous efforts to document the distribution of benthic taxa observed in the video records from 668 ROV dives conducted by the Monterey Bay Aquarium Research Institute (MBARI) provide a uniquely detailed record of the occurrence of chemosynthetic biological communities (CBC). The combined results of these studies provide an understanding of the relationship between disturbance caused by episodic mass wasting events and the distribution of CBC. CBC are common within the canyon's axis below ~2.5 km water depth, but have not been found within the canyon's axis at depths shallower than 2 km. Moreover, CBC occur on the canyon walls at essentially any depth, primarily within young (~hundreds of years old) slump scars. The distribution of CBC provides evidence about the disturbance history of the seafloor. Major mass transport events will destroy communities that lie in their path. Erosion associated with major mass transport events can create environments to support CBC by exposing methane-bearing strata. This can happen as a result of slumping events on the sidewalls of the canyon or where major gravity flow events have excavated the base of canyon walls. Once fresh strata are exposed, geochemical conditions to support CBC will persist for a few centuries. Because CBC are composed of slow-growing and long-lived organisms, it will take decades for these communities to be established. Their existence indicates that environmental stability has occurred over a similar time scale.

California↗

USGS2022

What common-garden experiments tell us about climate responses in plants

Common garden experiments are indoor or outdoor plantings of species or populations collected from multiple distinct geographic locations, grown together under shared conditions. These experiments examine a range of questions for theory and application using a variety of methods for analysis. The eight papers of this special feature comprise a cross section of contemporary approaches, summarized and synthesized here by what they tell us about the relationships between climate-related trait spectra and fitness optima. Four of the eight papers are based on field experiments in prairie, desert, Mediterranean and boreal biomes. Representative of many common garden experiments, these experiments reveal consistent evidence of traits varying with population climate provenance, but evidence of a tradeoff between growth and tolerance traits or of consistent fitness optimization at home is scant, in contrast to trait theory. Two synthesis papers highlight dominant patterns of trait divergence, including for an exotic invasive species. One theoretical paper warned that unknown kinship relationships between populations can result in the misidentification of adaptive trait divergence. A third synthesis paper formulated novel and ambitious goals for common-garden studies through including measurement of response variables at multiple levels of biological organization. The featured papers discuss multiple avenues for improving common garden studies. Genomic analysis, together with the quantification of kinship relationships, will continue to reveal the influence of environmental drivers on gene selection. Measuring a more complete set of fitness traits, especially for traits related to regeneration, will permit the development of projection models to explicitly link trait spectra, climate patterns and fitness consequences. More standardized data reporting will additionally improve abilities to synthesize findings across experiments. Testing population performance in competition with other species will produce more robust fitness comparisons between genotypes, especially for slower-growing genotypes in higher-resource environments. Adding gardens in and beyond climatic edge locations will furthermore strengthen the understanding of population failure and species exclusion. Finally, there is unrealized potential in adding ecosystem-level observations to common-garden studies that will enhance integrative analysis across scales of biological organization and scientific domains. Synthesis . With novel, creative designs, data integration and synthesis, common garden experiments will continue to advance the understanding of trait ensembles interacting with climate across scales of biological organization, provide pivotal data for global change models and guide ecological applications such as restoration of habitats for rare and climate sensitive species.

Journal of Ecology↗

USGS2024

Bringing traits back in the equation: A roadmap to understand species redistribution

Ecological and evolutionary theories have proposed that species traits should be important in mediating species responses to contemporary climate change; yet, empirical evidence has so far provided mixed evidence for the role of behavioral, life history, or ecological characteristics in facilitating or hindering species range shifts. As such, the utility of trait-based approaches to predict species redistribution under climate change has been called into question. We develop the perspective, supported by evidence, that trait variation, if used carefully can have high potential utility, but that past analyses have in many cases failed to identify an explanatory value for traits by not fully embracing the complexity of species range shifts. First, we discuss the relevant theory linking species traits to range shift processes at the leading (expansion) and trailing (contraction) edges of species distributions and highlight the need to clarify the mechanistic basis of trait-based approaches. Second, we provide a brief overview of range shift–trait studies and identify new opportunities for trait integration that consider range-specific processes and intraspecific variability. Third, we explore the circumstances under which environmental and biotic context dependencies are likely to affect our ability to identify the contribution of species traits to range shift processes. Finally, we propose that revealing the role of traits in shaping species redistribution may likely require accounting for methodological variation arising from the range shift estimation process as well as addressing existing functional, geographical, and phylogenetic biases. We provide a series of considerations for more effectively integrating traits as well as extrinsic and methodological factors into species redistribution research. Together, these analytical approaches promise stronger mechanistic and predictive understanding that can help society mitigate and adapt to the effects of climate change on biodiversity.

Global Change Biology↗

USGS2017

Colorado River fish monitoring in Grand Canyon, Arizona; 2002–14 humpback chub aggregations

The humpback chub ( Gila cypha ) is an endangered cyprinid species endemic to the Colorado River. The largest remaining population of the species spawns and rears in the Little Colorado River in Grand Canyon. Construction and operation of Glen Canyon Dam has altered the main-stem Colorado River in Glen and Grand Canyons. Cold, clear water releases from the dam result in a river that is generally unsuitable for successful humpback chub reproduction. During the early 1990s, nine locations within the main-stem Colorado River were identified as humpback chub aggregations—areas with a consistent and disjunct group of fish with no significant exchange of individuals with other aggregations. We monitored main-stem Colorado River aggregations of humpback chub in Grand Canyon during 2010 to 2014 and compared our results to previous investigations. Relative abundance, as described by catch per unit effort (fish per hour) of adult humpback chub at most main-stem aggregations, generally increased from the 1990s to 2014. In addition, distribution of humpback chub in the main-stem Colorado River has increased since the 1990s. Movement of humpback chub between the Little Colorado River and other aggregations likely adds fish to those aggregations. There is clear evidence of reproduction near the 30-Mile aggregation, and reproduction at Middle Granite Gorge and downstream seems likely based on catches of gravid fish and captures of very young fish, especially during relatively warm water releases from Glen Canyon Dam, 2004 to 2011. Humpback chub relative abundance at Shinumo and Havasu Creek inflows increased following translocations of young humpback chub starting in 2009. In light of this information, we modify the original nine aggregations, combining two previously separate aggregations and dropping two locations to form six distinct aggregations of humpback chub. Trends in humpback chub abundance at main-stem aggregations, relative to management actions (for example, translocations) or changing environmental conditions (for example, river warming), informs management of the species across a riverscape scale within the Colorado River.

Colorado↗

USGS1990

Influence of seasonal growth, age, and environmental exposure on Cu and Ag in a bivalve indicator, Macoma balthica, in San Francisco Bay

Temporal and spatial variations in Cu and Ag in the deposit-feeding clam Macoma balthica and in surficial sediments were analysed at 8 stations in San Francisco Bay at near-monthly intervals for periods ranging from 3 to 10 yr during 1977 to 1986. Strong seasonal variations in metal concentrations of M. balthica were associated with seasonal variations in soft tissue weight. Aperiodic fluctuations in metal concentration appeared to be driven by changes in metal content of the soft tissues. Metal content of clams of standard shell length was less variable than tissue metal concentration, and generally followed changes in the concentrations of Cu and Ag in the sediments. Correlations between metal content and sediment concentrations were improved when content was standardized to age rather than shell length. Metal content of M. balthica displayed few consistent temporal trends among stations, evidently reflecting different sources of input and complex hydrologic and geochemical processes affecting metal availability in San Francisco Bay. Increases in Cu and Ag were noted at several stations in South Bay during 1977 to 1980. A continuous 10 yr record at one of these stations showed that the 1977 to 1980 increase and the subsequent decline beginning in 1981 coincided with fluctuations in metal inputs from a nearby source.

California↗

USGS1985

Metal contamination in wildlife living near two zinc smelters

Wildlife in an oak forest on Blue Mountain was studied 10 km upwind (Bake Oven Knob site) and 2 km downwind (Palmerton site) of two zinc smelters in eastern Pennsylvania, USA. Previous studies at sites near these smelters had shown changes in populations of soil microflora, lichens, green plants and litter-inhabiting arthropods. The 02 soil litter horizon at Palmerton was heavily contaminated with Pb (2700 mg kg −1 ), Zn (24 000 mg kg −1 ), and Cd (710 mg kg −1 ), and to a lesser extent with Cu (440 mg kg −1 ). Various kinds of invertebrates (earthworms, slugs and millipedes) that feed on soil litter or soil organic matter were rare at, or absent from, the Palmerton site. Those collected at Bake Oven Knob tended to have much higher concentrations of metals than did other invertebrates. Frogs, toads and salamanders were very rare at, or absent from, the Palmerton site, but were present at Bake Oven Knob and at other sites on Blue Mountain farther from the smelters. Metal concentrations (dry wt) in different organisms from Palmerton were compared. Concentrations of Pb were highest in shrews (110 mg kg −1 ), followed by songbirds (56 mg kg −1 ), leaves (21 mg kg −1 ), mice (17 mg kg −1 ), carrion insects (14 mg kg −1 ), berries (4·0 mg kg −1 ), moths (4·3 mg kg −1 ) and fungi (3·7 mg kg −1 ). Concentrations of Cd, in contrast, were highest in carrion insects (25 mg kg −1 ), followed by fungi (9·8 mg kg −1 ), leaves (8·1 mg kg −1 ), shrews (7·3 mg kg −1 ), moths (4·9 mg kg −1 ), mice (2·6 mg kg −1 ), songbirds (2·5 mg kg −1 ) and berries (1·2 mg kg −1 ). Concentrations of Zn and Cu tended to be highest in the same organisms that had the highest concentrations of Cd. Only a small proportion of the metals in the soil became incorporated into plant foliage, and much of the metal contamination detected in the biota probably came from aerial deposition. The mice from both sites seemed to be healthy. Shrews had higher concentrations of metals than did mice, and one shrew showed evidence of Pb poisoning; its red blood cell ALAD activity was greatly reduced, one kidney contained acid-fast intranuclear inclusion bodies, and the other kidney had 280 mg kg −1 Pb (wet wt). The livers from two cuckoos from Palmerton had elevated Pb concentrations (18 and 25 mg kg −1 , wet wt). Most of the songbirds seemed to be healthy.

Pennsylvania↗

USGS2017

Radiocarbon ages of terrestrial gastropods extend duration of ice-free conditions at the Two Creeks forest bed, Wisconsin, USA

Analysis of terrestrial gastropods that underlie the late Pleistocene Two Creeks forest bed (~ 13,800–13,500 cal yr BP) in eastern Wisconsin, USA provides evidence for a mixed tundra-taiga environment prior to formation of the taiga forest bed. Ten new AMS 14 C analyses on terrestrial gastropod shells indicate the mixed tundra-taiga environment persisted from ~ 14,500 to 13,900 cal yr BP. The Twocreekan climatic substage, representing ice-free conditions on the shore of Lake Michigan, therefore began near the onset of peak warming conditions during the Bølling–Allerød interstadial and lasted ~ 1000 yr, nearly 600 yr longer than previously thought. These results provide important data for understanding the response of continental ice sheets to global climate forcing and demonstrate the potential of using terrestrial gastropod fossils for both environmental reconstruction and age control in late Quaternary sediments.

Wisconsin↗

USGS2009

Sources and transformations of nitrate from streams draining varying land uses: Evidence from dual isotope analysis

Knowledge of key sources and biogeochemical processes that affect the transport of nitrate (NO 3 - ) in streams can inform watershed management strategies for controlling downstream eutrophication. We applied dual isotope analysis of NO 3 - to determine the dominant sources and processes that affect NO 3 - concentrations in six stream/river watersheds of different land uses. Samples were collected monthly at a range of flow conditions for 15 mo during 2004-05 and analyzed for NO 3 - concentrations, ?? 15 N NO3 , and ?? 18 O NO3 . Samples from two forested watersheds indicated that NO 3 - derived from nitrification was dominant at baseflow. A watershed dominated by suburban land use had three ?? 18 O NO3 values greater than +25???, indicating a large direct contribution of atmospheric NO 3 - transported to the stream during some high flows. Two watersheds with large proportions of agricultural land use had many ?? 15 N NO3 values greater than +9???, suggesting an animal waste source consistent with regional dairy farming practices. These data showed a linear seasonal pattern with a ?? 18 O NO3 :?? 15 N NO3 of 1:2, consistent with seasonally varying denitrification that peaked in late summer to early fall with the warmest temperatures and lowest annual streamflow. The large range of ?? 15 N NO3 values (10???) indicates that NO 3 - supply was likely not limiting the rate of denitrification, consistent with ground water and/or in-stream denitrification. Mixing of two or more distinct sources may have affected the seasonal isotope patterns observed in these two agricultural streams. In a mixed land use watershed of large drainage area, none of the source and process patterns observed in the small streams were evident. These results emphasize that observations at watersheds of a few to a few hundred km 2 may be necessary to adequately quantify the relative roles of various NO 3 - transport and process patterns that contribute to streamflow in large basins. Copyright ?? 2009 by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America. All rights reserved.

Journal of Environmental Quality↗

USGS2005

Preliminary survey of antibiotic-resistant fecal indicator bacteria and pathogenic Escherichia coli from river-water samples collected in Oakland County, Michigan, 2003

A preliminary study was done in Oakland County, Michigan, to determine the concentration of fecal indicator bacteria (fecal coliform bacteria and enterococci), antibiotic resistance patterns of these two groups, and the presence of potentially pathogenic Escherichia coli ( E. coli ). For selected sites, specific members of these groups [ E. coli , Enterococcus faecium ( E. faecium ) and Enterococcus faecalis ( E. faecalis )] were isolated and tested for levels of resistance to specific antibiotics used to treat human infections by pathogens in these groups and for their potential to transfer these resistances. In addition, water samples from all sites were tested for indicators of potentially pathogenic E. coli by three assays: a growth-based assay for sorbitol-negative E. coli , an immunological assay for E. coli O157, and a molecular assay for three virulence and two serotype genes. Samples were also collected from two non-urbanized sites outside of Oakland County. Results from the urbanized Oakland County area were compared to those from these two non-urbanized sites. Fecal indicator bacteria concentrations exceeded State of Michigan recreational water-quality standards and (or) recommended U.S. Environmental Protection Agency (USEPA) standards in samples from all but two Oakland County sites. Multiple-antibiotic-resistant fecal coliform bacteria were found at all sites, including two reference sites from outside the county. Two sites (Stony Creek and Paint Creek) yielded fecal coliform isolates resistant to all tested antibiotics. Patterns indicative of extended-spectrum-β-lactamase (ESBL)- producing fecal coliform bacteria were found at eight sites in Oakland County and E. coli resistant to clinically significant antibiotics were recovered from the River Rouge, Clinton River, and Paint Creek. Vancomycin-resistant presumptive enterococci were found at six sites in Oakland County and were not found at the reference sites. Evidence of acquired antibiotic resistances was detected in bacteria from multiple sites in Oakland County but not detected in bacteria from the reference sites. Integrons capable of transferring resistance were detected in isolates from the River Rouge and Clinton River. E. faecium and E. faecalis identified in samples collected from Kearsley Creek and Evans Ditch were resistant to high levels of vancomycin and carried transferable genes responsible for resistance. Several sites in Oakland County had indicators of pathogenic E. coli in August and (or) September 2003. Two samples from the Clinton River in August tested positive for all three E. coli O157 tests. Both the August and September samples from one River Rouge site were positive for the immunological and molecular assay for E. coli O157. A combination of virulence genes commonly associated with human illness was detected at five sites in August and seven sites in September. Antibiotic-resistance profiles of clinical concern along with genes capable of transferring the resistance were found at several sites throughout Oakland County; samples from many of these sites also contained potentially pathogenic E. coli .

Michigan↗

USGS2023

Results of validation exercise for Marine Benthic Index

Marine benthic invertebrates (benthos) are key components of the Puget Sound ecosystem. Because of their direct association living in, and sometimes consuming, sediments, benthos can be valuable sentinels of ecosystem health. Therefore, indicators of benthic invertebrate community health can serve as direct measures of sediment and water quality. In 2021, the Puget Sound Partnership funded development of a Marine Benthic Index . The Marine Benthic Index thus developed uses a novel approach that accounts for habitat preferences of the benthic invertebrate species. This report describes the design and results of the exercise conducted to validate the Marine Benthic Index . The goals of the validation exercise were to determine (a) how well the Marine Benthic Index matches more standard ways of assessing community health and (b) how finely it is possible to distinguish between levels of disturbance. A controlled experiment was devised in which simulated benthic communities were generated to correspond to predetermined levels of disturbance, and experts in benthic ecology determined which communities reflected the more-disturbed conditions. In this way, the index was directly compared to traditional methods of assessing benthic communities. The results provide strong evidence that the “latent disturbance” model used to derive the Marine Benthic Index is identifying effects that benthic experts recognize as disturbance. Not only did the model agree with the experts overall, but also the probability of agreement strongly increased with increasing difference in disturbance level. The validation exercise results indicate that the Marine Benthic Index is a reliable method of determining disturbance without the necessity of assuming a priori knowledge of the disturbance. Furthermore, the numerical approach embodied in the Marine Benthic Index has the advantage of being able to find patterns beyond the capability of individual experts to know the effects of human disturbances for all species under all environmental conditions.

Washington↗

USGS2020

Primary sources of polycyclic aromatic hydrocarbons to streambed sediment in Great Lakes tributaries using multiple lines of evidence

Polycyclic aromatic hydrocarbons (PAHs) are among the most widespread and potentially toxic contaminants in Great Lakes (USA/Canada) tributaries. The sources of PAHs are numerous and diverse, and identifying the primary source(s) can be difficult. The present study used multiple lines of evidence to determine the likely sources of PAHs to surficial streambed sediments at 71 locations across 26 Great Lakes Basin watersheds. Profile correlations, principal component analysis, positive matrix factorization source‐receptor modeling, and mass fractions analysis were used to identify potential PAH sources, and land‐use analysis was used to relate streambed sediment PAH concentrations to different land uses. Based on the common conclusion of these analyses, coal‐tar–sealed pavement was the most likely source of PAHs to the majority of the locations sampled. The potential PAH‐related toxicity of streambed sediments to aquatic organisms was assessed by comparison of concentrations with sediment quality guidelines. The sum concentration of 16 US Environmental Protection Agency priority pollutant PAHs was 7.4–196 000 µg/kg, and the median was 2600 µg/kg. The threshold effect concentration was exceeded at 62% of sampling locations, and the probable effect concentration or the equilibrium partitioning sediment benchmark was exceeded at 41% of sampling locations. These results have important implications for watershed managers tasked with protecting and remediating aquatic habitats in the Great Lakes Basin.

Indiana, Michigan, Minnesota, New York, Ohio, Wisc↗