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Coeur d'Alene Lake, Idaho: Insights gained From limnological studies of 1991-92 and 2004-06

More than 100 years of mining and processing of metal-rich ores in northern Idaho’s Coeur d’Alene River basin have resulted in widespread metal contamination of the basin’s soil, sediment, water, and biota, including Coeur d’Alene Lake. Previous studies reported that about 85 percent of the bottom of Coeur d’Alene Lake is substantially enriched in antimony, arsenic, cadmium, copper, lead, mercury, silver, and zinc. Nutrients in the lake also are a major concern because they can change the lake’s trophic status—or level of biological productivity—which could result in secondary releases of metals from contaminated lakebed sediments. This report presents insights into the limnological functioning of Coeur d’Alene Lake based on information gathered during two large-scale limnological studies conducted during calendar years 1991–92 and water years 2004–06. Both limnological studies reported that longitudinal gradients exist from north to south for decreasing water column transparency, loss of dissolved oxygen, and increasing total phosphorus concentrations. Gradients also exist for total lead, total zinc, and hypolimnetic dissolved oxygen concentrations, ranging from high concentrations in the central part of the lake to lower concentrations at the northern and southern ends of the lake. In the southern end of the lake, seasonal anoxia serves as a mechanism to release dissolved constituents such as phosphorus, nitrogen, iron, and manganese from lakebed sediments and from detrital material within the water column. Nonparametric statistical hypothesis tests at a significance level of α=0.05 were used to compare analyte concentrations among stations, between lake zones, and between study periods. The highest dissolved oxygen concentrations were measured in winter in association with minimum water temperatures, and the lowest concentrations were measured in the Coeur d’Alene Lake hypolimnion during late summer or autumn as prolonged thermal stratification restricted mixing of the oxygenated upper water column and the hypolimnion, where oxygen was consumed. Large differences in median concentrations of dissolved inorganic nitrogen were measured between the euphotic zone and hypolimnion in the deep areas of the lake. These differences in nitrogen concentrations were attributable to several limnological processes, including seasonal inflow plume routing, isolation from wind-driven circulation and associated hypolimnetic enrichment, phytoplanktonic assimilation during summer months, and benthic flux. Increased chlorophyll- a and total phosphorus concentrations were measured throughout the lake in the 2004–06 study compared with results from the 1991–92 study. No significant change in hypolimnetic dissolved inorganic nitrogen concentration throughout the lake was noted even though total nitrogen loads into the lake decreased between study periods. Total zinc and total lead decreased throughout the lake from the 1991-92 study to the 2004-06 study except in the southern part of the lake, where concentrations were typically low. Median detected nitrogen-to-phosphorus ratios decreased from the 1991–92 study to the 2004–06 study. Whereas the lake was clearly phosphorus-limited in 1991–92, in 2004–06 the lake may have been much closer to the boundary value of 7.2 that separates nitrogen from phosphorus limitation. However, due to changes in analytical reporting limits in the period between the two studies, the data are insufficiently certain to draw reliable conclusions with regard to limiting nutrients. For both studies, the trophic state of the lake was classified as oligotrophic (less productive) or mesotrophic (moderately productive), depending on the constituent used for classification. Internal circulation from wind-generated waves and changes in the lake’s thermocline are important processes for distribution of water-quality constituents throughout Coeur d’Alene Lake. Surficial distribution of trace metals throughout most of the lake, including bays, is relatively uniform. Even south of the Coeur d’Alene River mouth, lakebed sediments are contaminated with trace metals. Inflow plume routing of the two primary inflow sources, the Coeur d’Alene and St. Joe Rivers, also significantly affects the fate and transport of contaminants. Most riverine inflows appear to move through the lake as overflow during summer, interflow during spring and autumn, and underflow during winter. Benthic flux is another key transport process for contaminants in Coeur d’Alene Lake. The results of in situ benthic flux chamber experiments indicated movement of dissolved metals, nutrients, and dissolved organic carbon out of the lakebed sediments. However, the lake is an overall sink for these constituents when they are associated with particulate material.

Idaho↗

Lithologic and physicochemical properties and hydraulics of flow in and near the freshwater/saline-water transition zone, San Antonio segment of the Edwards aquifer, south-central Texas, based on water-level and borehole geophysical log data, 1999-2007

The freshwater zone of the San Antonio segment of the Edwards aquifer in south-central Texas (hereinafter, the Edwards aquifer) is bounded to the south and southeast by a zone of transition from freshwater to saline water (hereinafter, the transition zone). The boundary between the two zones is the freshwater/saline-water interface (hereinafter, the interface), defined as the 1,000-milligrams per liter dissolved solids concentration threshold. This report presents the findings of a study, done by the U.S. Geological Survey in cooperation with the San Antonio Water System, to obtain lithologic properties (rock properties associated with known stratigraphic units) and physicochemical properties (fluid conductivity and temperature) and to analyze the hydraulics of flow in and near the transition zone of the Edwards aquifer on the basis of water-level and borehole geophysical log data collected from 15 monitoring wells in four transects during 1999-2007. No identifiable relation between conductivity values from geophysical logs in monitoring wells in all transects and equivalent freshwater heads in the wells at the times the logs were run is evident; and no identifiable relation between conductivity values and vertical flow in the boreholes concurrent with the times the logs were run is evident. The direction of the lateral equivalent freshwater head gradient and thus the potential lateral flow at the interface in the vicinity of the East Uvalde transect fluctuates between into and out of the freshwater zone, depending on recharge and withdrawals. Whether the prevailing direction on average is into or out of the freshwater zone is not clearly indicated. Equivalent freshwater head data do not indicate a prevailing direction of the lateral gradient at the interface in the vicinity of the Tri-County transect. The prevailing direction on average of the lateral gradient and thus potential lateral flow at the interface in the vicinity of the Kyle transect likely is from the transition zone into the freshwater zone. The hypothesis regarding the vertical gradient at the East Uvalde transect, and thus the potential for vertical flow near an interface conceptualized as a surface sloping upward in the direction of the dip of the stratigraphic units, is that the potential for vertical flow fluctuates between into and out of the freshwater zone, depending on recharge and withdrawals. At the Tri-County transect, a downward gradient on the fresh-water side of the interface and an upward gradient on the saline-water side are evidence of opposing potentials that appear to have stabilized the position of the interface over the range of hydrologic conditions that occurred at the times the logs were run. At the Fish Hatchery transect, an upward gradient on the saline-water side of the interface, coupled with the assumption of a sloping interface, implies a vertical gradient from the transition zone into the freshwater zone. This potential for vertical movement of the interface apparently was opposed by the potential (head) on the freshwater side of the interface that kept the interface relatively stable over the range of hydrologic conditions during which the logs were run. The five flow logs for Kyle transect freshwater well KY1 all indicate upward flow that originates from the Glen Rose Limestone, the uppermost unit of the Trinity aquifer; and one log for well KY2 shows upward flow entering the borehole from the Trinity aquifer. These flow data constitute evidence of the potential for flow from the Trinity aquifer into the Edwards aquifer in the vicinity of the Kyle transect. Subsurface temperature data indicate that flow on average is more active, or vigorous, on the freshwater side of the interface than on the saline-water side. A hydraulic connection between the transition zone and the freshwater zone is indicated by similar patterns in the hydrographs of the 15 transect monitoring wells in and near the transition zone and three county index wel

Texas↗

Isotopically modified silver nanoparticles to assess nanosilver bioavailability and toxicity at environmentally relevant exposures

A major challenge in understanding the environmental implications of nanotechnology lies in studying nanoparticle uptake in organisms at environmentally realistic exposure concentrations. Typically, high exposure concentrations are needed to trigger measurable effects and to detect accumulation above background. But application of tracer techniques can overcome these limitations. Here we synthesised, for the first time, citrate-coated Ag nanoparticles using Ag that was 99.7 % 109 Ag. In addition to conducting reactivity and dissolution studies, we assessed the bioavailability and toxicity of these isotopically modified Ag nanoparticles ( 109 Ag NPs) to a freshwater snail under conditions typical of nature. We showed that accumulation of 109 Ag from 109 Ag NPs is detectable in the tissues of Lymnaea stagnalis after 24-h exposure to aqueous concentrations as low as 6 ng L –1 as well as after 3 h of dietary exposure to concentrations as low as 0.07 μg g –1 . Silver uptake from unlabelled Ag NPs would not have been detected under similar exposure conditions. Uptake rates of 109 Ag from 109 Ag NPs mixed with food or dispersed in water were largely linear over a wide range of concentrations. Particle dissolution was most important at low waterborne concentrations. We estimated that 70 % of the bioaccumulated 109 Ag concentration in L. stagnalis at exposures <0.1 µg L –1 originated from the newly solubilised Ag. Above this concentration, we predicted that 80 % of the bioaccumulated 109 Ag concentration originated from the 109 Ag NPs. It was not clear if agglomeration had a major influence on uptake rates.

Environmental Chemistry↗

Methods of analysis by the U.S. Geological Survey National Water Quality Laboratory-Determination of organophosphate pesticides in bottom sediment by gas chromatography with flame photometric detection

A method for the isolation of 20 parent organophosphate pesticides and 5 pesticide degradates from bottom-sediment samples is described. The compound O-ethyl-O-methyl-S-proplyphosphorothioate is reported as an estimated concentration because of variable performance. In this method, the sediment samples are centrifuged to remove excess waster mixed with anhydrous sodium sulfate and Soxhlet extracted overnight with dichloromethane (93 percent) and methanol (7 percent). The extract is concentrated and then filtered through a 0.2-micrometer polytetrafluoroethylene membrane syringe filter. An aliquot of the sample extract is quantitatively injected onto two polystyrene-divinylbenzene gel-permeation chromatographic columns connected in series. The compounds are eluted with dichloromethane and a fraction is collected for analysis, with some coextracted interferences, including elemental sulfur, separated and discarded. The aliquot is concentrated and solvent exchanged to ethyl acetate. The extract is analyzed by dual capillary-column gas chromatography with flame photometric detection. Single-operator method detection limits in sodium sulfate matrix samples ranged from 0.81 to 2 micrograms per kilogram. Method performance was validated by spiking all compounds into three different solid matrices (sodium sulfate, bed sediment from Clear Creek, and bed sediment from Evergreen Lake) at three different concentrations. Eight replicates were analyzed at each concentration in each matrix. Mean recoveries of method compounds spiked in Clear Creek samples ranged from 43 to 110 percent, and those in Evergreen Lake samples ranged from 62 to 118 percent for all pesticides. Mean recoveries of method compounds spiked in reagent sodium sulfate samples ranged from 41 to 101 percent for all pesticides. The only exception was O-ethyl-O-methyl-S-propylphosphorothioate, which had an average recovery of 35 percent, and, thus, sample concentration is reported as estimated ('E' remark code).

Water-Resources Investigations Report↗

CO2 storage resources, reserves, and reserve growth: Toward a methodology for integrated assessment of the storage capacity of oil and gas reservoirs and saline formations

Geologically based methodologies to assess the possible volumes of subsurface CO 2 storage must apply clear and uniform definitions of resource and reserve concepts to each assessment unit (AU). Application of the current state of knowledge of geologic, hydrologic, geochemical, and geophysical parameters (contingencies) that control storage volume and injectivity allows definition of the contingent resource (CR) of storage. The parameters known with the greatest certainty are based on observations on known traps (KTs) within the AU that produced oil, gas, and water. The aggregate volume of KTs within an AU defines the most conservation volume of contingent resource. Application of the concept of reserve growth to CR volume provides a logical path for subsequent reevaluation of the total resource as knowledge of CO 2 storage processes increases during implementation of storage projects. Increased knowledge of storage performance over time will probably allow the volume of the contingent resource of storage to grow over time, although negative growth is possible.

Energy Procedia↗

Effect of stream channel size on the delivery of nitrogen to the Gulf of Mexico

An increase in the flux of nitrogen from the Mississippi river during the latter half of the twentieth century has caused eutrophication and chronic seasonal hypoxia in the shallow waters of the Louisiana shelf in the northern Gulf of Mexico. This has led to reductions in species diversity, mortality of benthic communities and stress in fishery resources. There is evidence for a predominantly anthropogenic origin of the increased nitrogen flux, but the location of the most significant sources in the Mississippi basin responsible for the delivery of nitrogen to the Gulf of Mexico have not been clearly identified, because the parameters influencing nitrogen-loss rates in rivers are not well known. Here we present an analysis of data from 374 US monitoring stations, including 123 along the six largest tributaries to the Mississippi, that shows a rapid decline in the average first-order rate of nitrogen loss with channel size-from 0.45 day-1 in small streams to 0.005 day-1 in the Mississippi river. Using stream depth as an explanatory variable, our estimates of nitrogen-loss rates agreed with values from earlier studies. We conclude that the proximity of sources to large streams and rivers is an important determinant of nitrogen delivery to the estuary in the Mississippi basin, and possibly also in other large river basins.

Nature↗

Fire effects on aquatic ecosystems: An assessment of the current state of the science

Fire is a prevalent feature of many landscapes and has numerous and complex effects on geological, hydrological, ecological, and economic systems. In some regions, the frequency and intensity of wildfire have increased in recent years and are projected to escalate with predicted climatic and landuse changes. In addition, prescribed burns continue to be used in many parts of the world to clear vegetation for development projects, encourage desired vegetation, and reduce fuel loads. Given the prevalence of fire on the landscape, authors of papers in this special series examine the complexities of fire as a disturbance shaping freshwater ecosystems and highlight the state of the science. These papers cover key aspects of fire effects that range from vegetation loss and recovery in watersheds to effects on hydrology and water quality with consequences for communities (from algae to fish), food webs, and ecosystem processes (e.g., organic matter subsidies, nutrient cycling) across a range of scales. The results presented in this special series of articles expand our knowledge of fire effects in different biomes, water bodies, and geographic regions, encompassing aquatic population, community, and ecosystem responses. In this overview, we summarize each paper and emphasize its contributions to knowledge on fire ecology and freshwater ecosystems. This overview concludes with a list of 7 research foci that are needed to further our knowledge of fire effects on aquatic ecosystems, including research on: 1) additional biomes and geographic regions; 2) additional habitats, including wetlands and lacustrine ecosystems; 3) different fire severities, sizes, and spatial configurations; and 4) additional response variables (e.g., ecosystem processes) 5) over long (>5 y) time scales 6) with more rigorous study designs and data analyses, and 7) consideration of the effects of fire management practices and policies on aquatic ecosystems.

Freshwater Science↗

Paleoclimate Records: Providing context and understanding of current Arctic change

At present, the Arctic Ocean is experiencing changes in ocean surface temperature and sea ice extent that are unprecedented in the era of satellite observations, which extend from the 1980s to the present (see sections 5c,d). To provide context for current changes, scientists turn to paleoclimate records to document and study anthropogenic influence and natural decadal and multidecadal climate variability in the Arctic system. Paleoceanographic records extend limited Arctic instrumental measurements back in time and are central to improving our understanding of climate dynamics and the predictive capability of climate models. By comparing paleoceanographic records with modern observations, scientists can place the rates and magnitudes of modern Arctic change in the context of those inferred from the geological record. Over geological time, paleoceanographic reconstructions using, for instance, marine sediment cores indicate that the Arctic has experienced huge sea ice fluctuations. These fluctuations range from nearly completely ice-free to totally ice-covered conditions. The appearance of ice-rafted debris and sea ice-dependent diatoms in Arctic marine sediments indicate that the first Arctic sea ice formed approxi-mately 47 million years ago (St. John 2008; Stickley et al. 2009; Fig. SB5.1), coincident with an interval of declining atmospheric carbon dioxide (CO2) concentration, global climate cooling, and expansion of Earths cryosphere during the middle Eocene. The development of year-round (i.e., perennial) sea ice in the central Arctic Ocean, similar to conditions that exist today, is evident in sediment records as early as 1418 million years ago (Darby 2008). These records suggest that transitions in sea ice cover occur over many millennia and often vary in concert with the waxing and waning of circum-Arctic land ice sheets, ice shelves, and long-term fluctuations in ocean and atmospheric temperature and atmospheric CO2 concentrations (Stein et al. 2012; Jakobsson et al. 2014). Over shorter time scales, shallow sediment records from Arctic Ocean continental shelves allow more detailed, higher-resolution (hundreds of years resolution) reconstructions of sea ice history extending through the Holocene (11 700 years ago to present), the most recent interglacial period. A notable feature of these records is an early Holocene sea ice minimum, corresponding to a thermal maximum (warm) period from 11 000 to 5000 years ago, when the Arctic may have been warmer and had less summertime sea ice than today (Kaufman et al. 2004). However, it is not clear that the Arctic was ice-free at any point during the Holocene (Polyak et al. 2010). High-resolution paleosea ice records from the western Arctic in the Chukchi and East Siberian Seas indicate that sea ice concentrations increased through the Holocene in concert with decreasing summer solar insolation (sunlight). Sea ice extent in this region also varied in response to the volume of Pacific water delivered via the Bering Strait into the Arctic Basin (Stein et al. 2017; Polyak et al. 2016). Records from the Fram Strait (Mller et al. 2012), Laptev Sea (Hrner et al. 2016), and Canadian Arctic Archipelago (Vare et al. 2009) also indicate a similar long-term expansion of sea ice and suggest sea ice extent in these regions is modulated by the varying influx of warm Atlantic water into the Arctic Basin (e.g., Werner et al. 2013). Taken together, available records support a circum-Arctic sea ice expansion during the late Holocene. A notably high-resolution summer sea ice history (<5-year resolution) has been established for the last 1450 years using a network of terrestrial records (tree ring , lake sediment, and ice core records) located around the margins of the Arctic Ocean (Kinnard et al. 2011). Results summarized in Fig. SB5.2 indicate a pronounced decline in summer sea ice extent beginning in the 20th century, with exceptionally low ice extent recorded since the mid-1990s, consistent with the satellite record (see section 5d). While several episodes of reduced and expanded sea ice extent occur in association with climate anomalies such as the Medieval Climate Warm Period (AD 8001300) and the Little Ice Age (AD 14501850), the magnitude and pace of the modern decline in sea ice is outside of the range of natural variability and unprecedented in the 1450-year reconstruction (Kinnard et al. 2011). A radiocarbon-dated driftwood record of the Ellesmere ice shelf in the Canadian High Arctic, the oldest landfast ice in the Northern Hemisphere, also demonstrates a substantial reduction in ice extents over the 20th century (England et al. 2017). A supporting sediment record indicates that inflowing Atlantic water in Fram Strait has warmed by 2C since 1900, driving break up and melt of sea ice (Spielhagen et al. 2011). Complementary mooring and satellite observations show the Atlantification of the eastern Arctic due to enhanced inflow of warm saline water through Fram Strait (Nilsen et al. 2016) and nutrient-rich Pacific water via the Bering has increased by more than 50% (Woodgate et al. 2012), further driving sea ice melt and warming seas. Similar high-resolution proxy records from Arctic regions also indicate that the modern rate of increasing annual surface air temperatures has not been observed over at least the last 2000 years (McKay and Kaufman 2014). Scientists conclude that broad-scale sea ice variations recorded in the paleo record were dominantly driven by changes in basin-scale changes in atmospheric circulation patterns, fluctuations in air temperature, strength of incoming solar radiation, and changes in the inflow of warm water via Pacific and Atlantic inflows (Polyak et al. 2010). There is general consensus that ice-free Arctic summers are likely before the end of the 21st century (e.g., Stroeve et al. 2007; Massonnet et al. 2012), while some climate model projections suggest ice-free Arctic summers as early as 2030 (Wang and Overland 2009). Paleoclimate studies and observational time series attribute the decline in sea ice extent and thickness over the last decade to both enhanced greenhouse warming and natural climate variability. While understanding the interplay of these factors is critical for future projections of Arctic sea ice and ecosystems, most observational time series records cover only a few decades. This highlights the need for additional paleoceanographic reconstructions across multiple spatial and temporal domains to better understand the drivers and implications of present and future Arctic Ocean change.

Bulletin American Meteorological Society↗

Relationship of young-of-the-year northern pike to aquatic vegetation types in backwaters of the upper Mississippi River

The association of young-of-the-year northern pike ( Esox lucius ) with different aquatic plant types (e.g., submerged, emergent, floating) was studied to evaluate the impacts of a potential loss of backwaters on available fish nursery habitats in the upper Mississippi River. Eight biweekly collections were made at each of six representative lentic habitats in Navigation Pool 7. In the spring, average catches of northern pike from areas with submerged vegetation were nearly three times greater than from areas with emergent vegetation, and more than 10 times greater than from an area with no vegetation. This pattern was consistent until late summer, when the young became more common in the more highly oxygenated, less heavily vegetated waters. Food and growth were examined as possible indicators for the selection of areas with submerged vegetation over other habitats. Food varied among fish in the different vegetation types; however, no significant patterns of improved growth or condition were apparent. Young northern pike apparently were successful, opportunistic feeders. Although preference for habitats with submerged vegetation was seemingly not related to food, the overall production of young was clearly best in these habitats.

Illinois, Iowa, Minnesota, Missouri, Wisconsin↗

Missouri River Emergent Sandbar Habitat Monitoring Plan - A Conceptual Framework for Adaptive Management

Habitat conditions are one of the most important factors determining distribution and productivity of least terns (Sternula antillarum) and piping plovers (Charadrius melodus) in the upper Missouri River system (Ziewitz and others, 1992; Kruse and others, 2002). Habitat conditions are known to change within and among seasons in response to variation in river flows, weather conditions, and management actions targeted at providing for the needs of terns and plovers. Although these principles are generally agreed upon, there is little empirical information available on the quantity and quality of tern and plover habitats in this system, particularly with reference to the major life history events that must be supported (egg laying, incubation, and brood rearing). Habitat requirements for these events are composed of two major categories: nesting and foraging habitat. In the case of piping plovers, these two requirements must occur on the same area because plover chicks are constrained to foraging near nesting sites prior to fledging (Knetter and others, 2002; Haffner, 2005). In contrast, least terns chicks are fed by the adults, allowing food procurement for broods to occur outside the immediate nesting area; however, food resources must be close enough to nesting locations to minimize foraging time. The complexity and dynamics of the upper Missouri River system introduce considerable uncertainty into how best to manage tern and plover habitats, and how best to evaluate the effectiveness of this management. An extensive program of habitat monitoring will be needed to address this complexity and support the management of least terns and piping plovers under the Missouri River Recovery Program. These needs are being addressed, in part, through a program of habitat creation and management targeted at improving quality and quantity of habitats for terns and plovers. Given the momentum of these projects and their associated costs, it is imperative that the capacity be available to quantify changes in managed habitats for least terns and piping plovers, so that management effectiveness can be evaluated. Extremely high flows and flooding of the Missouri River in 1997 created and improved vast amounts of nesting habitat for least terns and piping plovers. Since 1998, there has been an apparent loss and/or degradation of habitat throughout the river system. However, during the same timeframe reservoir water levels have declined, exposing extensive piping plover breeding habitat. For example, 64 percent of adult piping plovers using the Missouri River in 2005 were observed on reservoir habitats, and 43 percent were observed on Lake Sakakawea (Threatened and Endangered Species Section, Omaha District, U.S. Army Corps of Engineers, unpub. data, 2006). Given the vast dynamics of this river and reservoir system, systemwide monitoring of habitat is clearly needed for the U.S. Army Corps of Engineers (USACE) to employ adaptive management (with respect to river operations) to provide most optimal conditions for the maintenance of breeding habitat of least terns and piping plovers. As a result of this need, the U.S. Geological Survey, in cooperation with the U.S. Army Corps of Engineers, began work on a habitat monitoring plan in 2005 as a conceptual framework for adaptive management.

Open-File Report↗

Offshore gas hydrate sample database with an overview and preliminary analysis

Synopsis -- A database of offshore gas hydrate samples was constructed from published observations and measurements. More than 90 samples from 15 distinct regions are represented in 13 data categories. This database has permitted preliminary description of gas hydrate (chiefly methane hydrate) tendencies and associations with respect to their geological environment. Gas hydrates have been recovered from offshore sediment worldwide and from total depths (water depth plus subseabed depth) ranging from 500 m to nearly 6,000 m. Samples have come from subbottom depths ranging from 0 to 400 m. Various physiographic provinces are represented in the data set including second order landforms such as continental margins and deep-sea trenches, and third order forms such as submarine canyons, continental slopes, continental margin ridges and intraslope basins. There is a clear association between fault zones and other manifestations of local, tectonic-related processes, and hydrate-bearing sediment. Samples of gas hydrate frequently consist of individual grains or particles. These types of hydrates are often further described as inclusions or disseminated in the sediment. Moreover, hydrates occur as a cement, as nodules, or as layers (mostly laminae) or in veins. The preponderance of hydrates that could be characterized as 2- dimensional (planar) were associated with fine sediment, either as intercalated layers or in fractures. Hydrate cements were commonly associated with coarser sediment. Hydrates have been found in association with grain sizes ranging from clay through gravel. More hydrates are associated with the more abundant finer-grained sediment than with coarser sediment, and many were discovered in the presence of both fine (silt and clay) and coarse sediment. The thickness of hydrate zones (i. e., sections of hydrate-bearing sediment) varies from a few centimeters to as much as 30 m. In contrast, the thickness of layers of pure hydrate or the dimensions of individual hydrate grains were most often characterized in terms of millimeters or centimeters, although a pure hydrate layer discovered in the Middle America Trench off Guatemala was as much as 3-4-m-thick. The data suggest that grains, or thin veins or laminae of pure gas hydrate may be ubiquitous in many hydrate zones but that typically they may only comprise a minor component of the thicker zones. In more than 80 percent of the hydrate samples the methane was of biogenic origin. The methane in the remainder was either classified as (or may be at least part) thermogenic. Each site where thermogenic gas was identified is characterized by faults or other manifestions of a dynamic geological environment (e.g., diapirs, mud volcanoes, gas seeps). Every sample in the database came from within the zone of theoretical methane hydrate stability, as determined on the basis of assumed regional pressure and temperature gradients. Most show that they were situated --- expressed in terms of depth --- well above the phase boundary and about 70% of the samples were located more than 100 m above the assumed regional position of that boundary. The calculated subseabed positions of the phase boundaries and the BSRs (bottom simulating reflector) are essentially identical. This may be taken as general corroboration of the regional phase boundary calculations and the concept of the BSR. Three provocative aspects of marine gas hydrates have been disclosed by the database: gas hydrates are frequently situated at much shallower subseabed depths than the assumed contemporary position of the regional phase boundary hydrates are often found in areas typified by faults or other indicators of a dynamic geological environment zones of gas hydrate-bearing sediment tend to be tens of centimeters to tens of meters thick but the hydrate within the thicker zones tends to be only a minor constituent. Whether existing as dispersed particles, cements, or pure layers or vein

Open-File Report↗

Classification of river regimes: A context for hydroecology

Over the past 30 years, ecologists have demostrated the importance of flow and temperature as primary variables in driving running water, riparian and floodplain ecosystems. As it is important to assess the size and timing of discharge variations in relation to those in temperature, a method is proposed that uses multivariate techniques to separately classify annual discharge and temperature regimes according to their 'shape' and 'magnitude', and which then combines the classifications. This paper: (i) describes a generally applicable method; (ii) tests the method by applying it to riparian systems on four British rivers using a 20-year record (1977-97) of flow and air temperature: (iii) proposes a hydroecological interpretation of the classification; (iv) considers the degree to which the methodology might provide information to support the design of ecologically acceptable flow regimes. 'Regimes' are defined for discharge and air temperature using monthly mean data. The results of applying the classification procedure to four British rivers indicates that the 'typical' regimes for each of the four catchments are composite features produced by a small number of clearly defined annual types that reflect interannual variability in hydroclimatological conditions. Annual discharge patterns are dominated by three 'shape' classes (accounting for 94% of the station years: class A, early (November) peak; class B, intermediate (December-January) peak; and class C, late (March) peak) and one 'magnitude' class (70% of the station years fall into class 3, intermediate), with two subordinate 'magnitude' classes: low-flow years (18%) and high flow years (12%). For air temperature, annual patterns are classified evenly into three 'shape' and four 'magnitude' classes. It is argued that this variety of flow-temperature patterns is important for sustaining ecosystem integrity and for establishing benchmark flow regimes and associated frequencies to aid river management. Copyright ?? 2000 John Wiley & Sons, Ltd.Over the past 30 years, ecologists have demonstrated the importance of flow and temperature as primary variables in driving running water, riparian and floodplain ecosystems. As it is important to assess the size and timing of discharge variations in relation to those in temperature, a method is proposed that uses multivariate techniques to separately classify annual discharge and temperature regimes according to their `shape' and `magnitude', and which then combines the classifications. This paper: (i) describes a generally applicable method; (ii) tests the method by applying it to riparian systems on four British rivers using a 20-year record (1977-97) of flow and air temperature; (iii) proposes a hydroecological interpretation of the classification; (iv) considers the degree to which the methodology might provide information to support the design of ecologically acceptable flow regimes. `Regimes' are defined for discharge and air temperature using monthly mean data. The results of applying the classification procedure to four British rivers indicates that the `typical' regimes for each of the four catchments are composite features produced by a small number of clearly defined annual types that reflect interannual variability in hydroclimatological conditions. Annual discharge patterns are dominated by three `shape' classes (accounting for 94% of the station years: class A, early (November) peak; class B, intermediate (December-January) peak; and class C, late (March) peak) and one `magnitude' class (70% of the station years fall into class 3, intermediate), with two subordinate `magnitude' classes: low-flow years (18%) and high flow years (12%). For air temperature, annual patterns are classified evenly into three `shape' and four `magnitude' classes. It is argued that this variety of flow-temperature patterns is important for sustaining ecosystem integrity and for establishing benchmark flow regimes and associated frequencies to aid

Hydrological Processes↗

History of the Redwall Limestone of northern Arizona

Throughout most of northern Arizona the Redwall Limestone of Mississippian age is readily divisible into four lithologic units, designated in ascending order as the Whitmore Wash, Thunder Springs, Mooney Falls, and Horseshoe Mesa Members. The first and third members are thick-bedded to massive carbonate rock. The Horseshoe Mesa Member is relatively thin-bedded limestone, and the Thunder Springs Member is distinctive because it consists of chert beds alternating with thin beds of carbonate rock. Trends in thickness of the various members indicate that the sediment that formed the Redwall was deposited on an even, gently sloping shelf that extended westward from the Defiance positive element, a low landmass located near the present eastern border of northern Arizona. The Peach Springs and Payson ridges projected west and southwest, respectively, from the positive element. These ridges, which were partly submerged and partly above sea level during Mississippian time, are indicated by the patterns of isopach lines and, in part, by the distribution of faunas. The ridges divided the Arizona section of the shelf into three segments: the northern-most, which slopes northwest toward the Cordilleran geosyncline, and the other two, which slope toward the south and southwest. Two transgressions and two regressions of the western and southern seaways are believed to be represented by the Redwall. The first transgression, which is recorded by thick beds of clastic sediment of the Whitmore Wash Member, was less extensive than the second, which is recorded by massive beds of the Mooney Falls Member, for on the western margins of the Defiance positive element the Mooney Falls Member overlaps the two lower members. Furthermore, south of Grand Canyon the Whitmore Wash and Thunder Springs Members lap against the Payson ridge without covering it, whereas the Mooney Falls Member, although relatively thin, extends across it. Regression is believed to be represented by thin beds of the Thunder Springs and Horseshoe Mesa Members, which are interpreted to be the result of low base level caused by silting up with clastic material and consequent retreat of the sea. Cycles in sedimentation are well developed in some parts of the Redwall, especially in the upper two members in which differences in grain size represent five major cycles recognized throughout the extent of the Grand Canyon. These textural differences, ranging from aphanitic to coarse grained, are considered to be not measures of the amount of transportation, as with terrigenous sediments, but reflections of the degree of turbulence or the lack of turbulence during deposition. They are interpreted as indicators of cyclic fluctuations in environment, probably related to changes in wave base. Several clearly defined facies within the Redwall indicate environments of deposition. The clastic limestone that forms a major part of the formation, especially in the offshore areas to the west and south, is believed to represent normal marine conditions where circulation was good and turbulence moderate to strong. Uniform finely crystalline dolomite probably developed through early diagenetic processes on the sea floor. On the basis of its distribution pattern the dolomite seems to have formed under shoal conditions, especially where it borders the shore of the Defiance positive element and along Peach Springs ridge. Oölitic limestone at the top of both major transgressive units is interpreted as reflecting the oscillatory conditions of sea level that provided wave and current agitation at times of maximum sea advance in shoal areas bordering the ridges. Aphanitic limestone, representing accumulations of lime mud, seems to be developed best in the uppermost, or Horseshoe Mesa, member, where, as the seas regressed, nearshore waters may have been isolated and certainly were very calm. Original textures and some structures are preserved in most limestones of the Redwall, and they give much evidence concerning oceanographic factors of the time. Generalizations have been developed concerning the character of the bottom, degrees of energy represented, depth, salinity, and other factors for various parts of the formation. Although these factors differed greatly with time and space, the general conclusions reached are that (1) depths were very shallow to moderate, (2) the sea floor was composed nearly entirely of lime mud and lime sand, which contained no terrigeneous material but with great crinoidal accumulations locally, (3) turbulence ranged from considerable to none, and (4) the sea was clear and warm and nowhere contained saline concentrations sufficient to form evaporites. Chert forming thin irregular beds, locally lenticular and nodular, occurs at two prinicpal positions in the stratigraphic section, and in each it alternates with thin beds of carbonate rock. Chert is prominent throughout the Thunder Springs Member and forms thin but definite zones near the top of the Mooney Falls Member. This chert is believed to have formed on the sea floor during early diagenesis, as evidenced by petrography, paleogeography, and faunal relations. Regional differences in the abundance and type of associated fossils, recorded on a series of 4-foot-square sample plots made throughout the Grand Canyon, suggest a probable relation between fossil distribution and genesis of the chert. The fauna of the Redwall is abundant and varied, but preservation in many places is poor, and numerous specimens can be collected only locally. The most common fossils are brachiopods, corals, foraminifers, and crinoids, but blastoids, gastropods, cephalopods, and pelecypods are not rare. Bryozoans are abundant in the chert of the Thunder Springs Member but uncommon elsewhere. Other organisms locally distributed but not common are algae, trilobites, fish, holothurians, and ostracodes. These groups have been studied by specialists and are the subject of Chapters V through XIII. Certain of the faunal groups, notably the corals and foraminifers, show some degree of vertical zoning and so have furnished important data on age and correlation. Among the corals, the zones of Dorlodotia inconstans and Michelinia expansa are especially significant because of their persistence from section to section across broad areas. The foraminiferal zones are broader and less sharply defined, but they represent a series of major changes in species from bottom to top of the formation. Age determination made on the basis of foraminifers and brachiopods indicate that the base of the Redwall is progressively younger as it passes from areas that were offshore eastward or northward toward the Defiance positive element; the top of the Redwall, in contrast, is shown to be progressively younger away from the positive element. Thus basal beds of Kinderhook age are recognized at Grand Wash, Quartermaster, and Meriwitica Canyons to the northwest, but the lowest strata are of Osage age at Bridge Canyon, Grandview, and other sections closer to the landmass. Likewise, units with fossils of middle Meramec age occur in western Grand Canyon, but, except in the one place discussed in the following paragraph, topmost beds farther east in Grand Canyon are of Osage age. South of Grand Canyon the youngest member of the Redwall (Horseshoe Mesa) has been removed by pre-Supai Formation erosion. Rocks still younger than the Horseshoe Mesa once may have covered the entire region, possibly representing a third sequence of transgression and regression. At Bright Angel trail in eastern Grand Canyon, for example, a unique unit at the top of the Redwall section contains fossils of Chester age and apparently represents a remnant of Late Mississippian rocks that survived as an inlier there.

Arizona↗

Pleistocene history of volcanism and the Owens River near Little Lake, California

During pluvial periods of the Pleistocene and Holocene, a large river flowed south from Owens Lake to China Lake between the Sierra Nevada and the Coso Range. The most recent channel, dry during historic time, is clearly marked by cliffs and falls. An older, now-abandoned part of the channel beneath Pleistocene lavas east of the present course is inferred from a meander-shaped ridge in Mesozoic basement rocks and a strong positive magnetic anomaly, presumably produced by a wedge of canyon-filling basalt. Three cycles of eruption and stream erosion have occurred along the present course. The first resulted when water impounded by damming of the now-abandoned eastern course found its way along the west margin of a basalt flow at the base of the Sierra Nevada escarpment, eventually carving a canyon at least 150 meters deep. Subsequently, two cycles, each consisting of an intracanyon basalt flow followed by major stream erosion, modified this canyon to its present configuration. A potassium-argon age of about 440000 years before present for the oldest of the three eroded lavas indicates that the river was not diverted from its easterly course until after that time. The age and character of lacustrine deposits in Searles Lake, a downstream part of the same drainage system, indicate that the greatest discharge of the river, and therefore, erosion of the two younger lavas since 440000 years B.P., probably occurred between 130000 and 10000 years B.P. An estimate of the rate of erosion during this period of time together with loosely constrained potassium-argon ages for the basalt of intermediate age suggests that the youngest lava is probably a few tens of thousands of years old and the intermediate lava somewhat less than 100000 years old. The youthfulness of the youngest basalt suggests that a fourth cycle of an intracanyon lava flow followed by stream erosion is a likely event for the near geologic future.

California↗

Habitat characteristics of benchmark streams in agricultural areas of eastern Wisconsin

Stream habitat characteristics were measured at twenty sites in agricultural areas of eastern Wisconsin by the U.S. Geological Survey in May and June, 1993 as part of the National Water-Quality Assessment Program Western Lake Michigan Drainages study unit. These "benchmark" stream sites were selected for study to represent standards of reference for comparison to other streams in similar physical settings that appear to be more detrimentally affected by agriculture. The agricultural benchmark streams were selected from four physical settings, or relatively homogeneous units (RHU's), that differ in bedrock type and texture of surficial deposits. Habitat characteristics at streams in these four physical settings are described and compared to each other, and a habitat classification scheme was used to rank the quality of habitat in these streams. Additional aquatic information was collected along with the habitat data: water-quality data and population surveys of fish, invertebrates, and algae. Habitat data were collected at three levels: drainage basin, stream segment between major tributaries (length from 1 to 14 km), and stream reach (approximately 150m). Results of statistical analyses show that, in general, most correlations are among basin-level habitat characteristics. Few correlations were observed among reach- and basin-level characteristics. Principal components analysis (PCA) on basin-level data resulted in principal components that reflect RHU, land use or latitude, and basin size. Groupings of habitat characteristics at the reach level are less clearly attributed to some outside environmental factor. Streams that have undergone habitat restoration for fisheries group closely together on PCA ordination plots. Less than half of the habitat characteristics were found to be significantly different between one RHU and the other three. Characteristics that differed between RHU's were mainly at the basin level but also included some reach-level characteristics. Stream-habitat characteristics were classified according to the Michigan Department of Environmental Quality, Great Lakes Environmental Assessment Section (GLEAS) Procedure 51. No relation was found between GLEAS scores and RHU or the percentage of agricultural land in the drainage basins above the benchmark-stream sites. GLEAS scores were varied in each RHU. Streams with high GLEAS scores (rated good or excellent) can be considered benchmark or reference streams as far as habitat is concerned. Of the 20 streams sampled, 16 met this criterion.

Wisconsin↗

Surface-air mercury fluxes and a watershed mass balance in forested and harvested catchments

Forest soils are among the world’s largest repositories for long-term accumulation of atmospherically deposited mercury (Hg), and understanding the potential for remobilization through gaseous emissions, aqueous dissolution and runoff, or erosive particulate transport to down-gradient aquatic ecosystems is critically important for projecting ecosystem recovery. Forestry operations, especially clear-cut logging where most of the vegetaiton is removed, can influence Hg mobility/fluxes, foodweb dynamics, and bioaccumulation processes. This paper measured surface-air Hg fluxes from catchments in the Pacific Northwest, USA, to determine if there is a difference between forested and logged catchments. These measurements were conducted as part of a larger project on the impact of forestry operations on Hg cycling which include measurements of water fluxes as well as impacts on biota. Surface-air Hg fluxes were measured using a commonly applied dynamic flux chamber (DFC) method that incorporated diel and seasonal variability in elemental Hg (Hg 0 ) fluxes at multiple forested and harvested catchments. The results showed that the forested ecosystem had depositional Hg 0 fluxes throughout most of the year (annual mean: −0.26 ng/m 2 /h). In contrast, the harvested catchments showed mostly emission of Hg 0 (annual mean: 0.63 ng/m 2 /h). Differences in solar radiation reaching the soil was the primary driver resulting in a shift from net deposition to emission in harvested catchments. The surface-air Hg fluxes were larger than the fluxes to water as runoff and accounted for 97% of the differences in Hg sequestered in forested versus harvested catchments.

Oregon↗

Development of a Kemp’s ridley sea turtle stock assessment model

We developed a Kemp’s ridley ( Lepidochelys kempii ) stock assessment model to evaluate the relative contributions of conservation efforts and other factors toward this critically endangered species’ recovery. The Kemp’s ridley demographic model developed by the Turtle Expert Working Group (TEWG) in 1998 and 2000 and updated for the binational recovery plan in 2011 was modified for use as our base model. The TEWG model uses indices of the annual reproductive population (number of nests) and hatchling recruitment to predict future annual numbers of nests on the basis of a series of assumptions regarding age and maturity, remigration interval, sex ratios, nests per female, juvenile mortality, and a putative ‘‘turtle excluder device effect’’ multiplier starting in 1990. This multiplier was necessary to fit the number of nests observed in 1990 and later. We added the effects of shrimping effort directly, modified by habitat weightings, as a proxy for all sources of anthropogenic mortality. Additional data included in our model were incremental growth of Kemp’s ridleys marked and recaptured in the Gulf of Mexico, and the length frequency of stranded Kemp’s ridleys. We also added a 2010 mortality factor that was necessary to fit the number of nests for 2010 and later (2011 and 2012). Last, we used an empirical basis for estimating natural mortality, on the basis of a Lorenzen mortality curve and growth estimates. Although our model generated reasonable estimates of annual total turtle deaths attributable to shrimp trawling, as well as additional deaths due to undetermined anthropogenic causes in 2010, we were unable to provide a clear explanation for the observed increase in the number of stranded Kemp’s ridleys in recent years, and subsequent disruption of the species’ exponential growth since the 2009 nesting season. Our consensus is that expanded data collection at the nesting beaches is needed and of high priority, and that 2015 be targeted for the next stock assessment to evaluate the 2010 event using more recent nesting and in-water data.

Gulf of Mexico Science↗

Surprise and opportunity for learning in Grand Canyon: the Glen Canyon Dam Adaptive Management Program

With a focus on resources of the Colorado River ecosystem below Glen Canyon Dam, the Glen Canyon Dam Adaptive Management Program has included a variety of experimental policy tests, ranging from manipulation of water releases from the dam to removal of non-native fish within Grand Canyon National Park. None of these field-scale experiments has yet produced unambiguous results in terms of management prescriptions. But there has been adaptive learning, mostly from unanticipated or surprising resource responses relative to predictions from ecosystem modeling. Surprise learning opportunities may often be viewed with dismay by some stakeholders who might not be clear about the purpose of science and modeling in adaptive management. However, the experimental results from the Glen Canyon Dam program actually represent scientific successes in terms of revealing new opportunities for developing better river management policies. A new long-term experimental management planning process for Glen Canyon Dam operations, started in 2011 by the U.S. Department of the Interior, provides an opportunity to refocus management objectives, identify and evaluate key uncertainties about the influence of dam releases, and refine monitoring for learning over the next several decades. Adaptive learning since 1995 is critical input to this long-term planning effort. Embracing uncertainty and surprise outcomes revealed by monitoring and ecosystem modeling will likely continue the advancement of resource objectives below the dam, and may also promote efficient learning in other complex programs.

Arizona, Nevada, Utah↗