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USGS2023

Reach-scale associations between introduced Brook Trout and juvenile and stream-resident Bull Trout in Idaho

Objective Native Bull Trout Salvelinus confluentus populations can be influenced by a variety of stressors operating at multiple spatial scales, making the relative importance of biotic versus abiotic controls difficult to discern at small scales where monitoring and management typically occur. Nonnative Brook Trout S. fontinalis were widely introduced throughout western North America and negatively affect Bull Trout occurrence. Here, we examine reach-scale associations between nonnative Brook Trout and juvenile and stream-resident Bull Trout (i.e., <250 mm) abundances through the lens of a constraining threshold, where nonnative fish exceeding a certain fish density may constrain native fish abundance. Methods We used a large spatial data set to define the abiotic conditions in which stream-dwelling Brook Trout and Bull Trout smaller than 250 mm typically co-occur in Idaho. Next, we queried multipass electrofishing survey data collected in reaches with abiotic conditions suitable for both species within localized areas where their distributions overlap. We then used two-dimensional Kolmogorov–Smirnov tests to identify threshold Brook Trout densities beyond which Bull Trout less than 250 mm were consistently rare or absent. Result Bull Trout smaller than 250 mm were rare or absent where Brook Trout density exceeded 0.54 fish/100 m 2 across the full range of abiotic conditions over which both species overlapped. However, Brook Trout rarely occurred in habitats associated with high Bull Trout density (e.g., where mean August water temperatures were 8.2°C). Conclusion Our results support existing hypotheses that the long-term co-occurrence of Bull Trout and Brook Trout in stream reaches suitable for both species may be unstable. Because low densities of Brook Trout appear to threaten Bull Trout, additional research is needed to better understand factors driving ongoing range shifts and invasion dynamics in Bull Trout habitat. We provide a simple tool to inform where Brook Trout represent a primary threat to Bull Trout, with potential applications for future monitoring, threat assessments, and conservation efforts.

Idaho↗

USGS2018

Great Lakes coastal fish habitat classification and assessment

Basin-scale assessment of fish habitat in Great Lakes coastal ecosystems would increase our ability to prioritize fish habitat management and restoration actions. As a first step in this direction, we identified key habitat factors associated with highest probability of occurrence for several societally and ecologically important coastal fish species as well as community metrics, using data from the Great Lakes Aquatic Habitat Framework (GLAHF), Great Lakes Environmental Indicators (GLEI) and Coastal Wetland Monitoring Program (CWMP). Secondly, we assessed whether species-specific habitat was threatened by watershed-level anthropogenic stressors. In the southern Great Lakes, key habitat factors for determining presence/absence of several species of coastal fish were chlorophyll concentrations, turbidity, and wave height, whereas in the northern ecoprovince temperature was the major habitat driver for most of the species modeled. Habitat factors best explaining fish richness and diversity were bottom slope and chlorophyll a . These models could likely be further improved with addition of high-resolution submerged macrophytecomplexity data which are currently unavailable at the basin-wide scale. Proportion of invasive species was correlated primarily with increasing maximum observed inorganic turbidity and chlorophyll a . We also demonstrate that preferred habitat for several coastal species and high-diversity areas overlap with areas of high watershed stress. Great Lakes coastal wetland fish are a large contributor to ecosystem services as well as commercial and recreational fishery harvest, and scalable basin-wide habitat models developed in this study may be useful for informing management actions targeting specific species or overall coastal fish biodiversity.

Great Lakes↗

USGS2012

A study of the spawning ecology and early life history survival of Bonneville Cutthroat Trout

We completed a large‐scale field experiment in four tributaries of the Logan River, Utah, where the largest metapopulation of imperiled Bonneville cutthroat trout Oncorhynchus clarkii utah persists. We documented the spatial and temporal distributions of spawners, quantified substrate use versus substrate availability, and evaluated differences in hatch and emergence fry success between and among sites in relation to habitat characteristics. We observed considerable variability in the timing, magnitude, and duration of spawning among study areas (streams), in part as a function of a variable, multipeaked hydrograph. Nevertheless, across study areas, >70% of redds were constructed on the final descending limb of the hydrograph. Despite large differences in the amount of spawning substrate available, Bonneville cutthroat trout utilized a narrow range of substrate and sizes (3–80 mm) similar to that utilized by other subspecies of cutthroat trout, albeit biased towards larger sizes. Water temperatures generally remained below the recommended range (6–17°C) for spawning; however, the viability of this metapopulation of cutthroat trout suggests that the recommended temperature range for spawning is overestimated for this subspecies and (or) does not account for local thermal adaptation. Hatch varied from 43% to 77% and emergence survival from 39% to 65% among streams, and within‐stream variability was substantial; both survival rates declined significantly as a function of increased fine sediment concentrations. Egg development rates were nearly 50% greater in a high‐elevation tributary where redd counts were also lowest. In high, mountain systems with short growing seasons, this incubation delay likely presents a significant growth disadvantage for age‐0 trout. Our research enhances our understanding of Bonneville cutthroat trout spawning ecology and early survival and provides critical information for aiding in the development of benchmarks for their recovery. Effective conservation efforts should be directed towards minimizing anthropogenic activities that result in excess sedimentation in their critical spawning tributaries.

Utah↗

USGS2022

Wind River subbasin restoration: Annual Report of U.S. Geological Survey activities January 2020 through December 2020

We sampled juvenile wild Steelhead Trout Oncorhynchus mykiss in headwater streams of the Wind River, WA, to characterize population attributes and investigate life-history metrics, particularly migratory patterns, and early life-stage survival. We used passive integrated transponder (PIT) tagging and a series of instream PIT-tag interrogation systems (PTISs) to track juveniles and adults. The Wind River subbasin is considered a wild Steelhead refuge by Washington Department of Fish and Wildlife (WDFW). No hatchery Steelhead Trout have been released in the Wind River subbasin since 1997, and hatchery adults are estimated at less than one percent of spawners in most years. Over twenty years of Steelhead Trout status and trend monitoring and research in the subbasin is contributing to understanding of population response to numerous restoration actions in the subbasin, including removal of Hemlock Dam from Trout Creek in 2009, which had an outdated adult ladder and contributed to increased water temperatures reducing performance of juvenile Steelhead Trout. Data from our study, and companion work by Washington Department of Fish and Wildlife, are contributing to Bonneville Power Administration’s (BPA) Research, Monitoring, and Evaluation (RM&E) Program Strategy of Fish Population Status Monitoring (https://www.cbfish.org/ProgramStrategy.mvc/Index). Specifically, this work addresses the substrategies of 1) Assessing the Status and Trends of Diversity of Natural Origin Fish Populations and Uncertainties Research regarding differing life histories of a wild Steelhead Trout population, 2) Assessing the Status and Trend of Adult Natural Origin Fish Populations, and 3) Monitoring and Evaluating the Effectiveness of Tributary Habitat Actions Relative to Environmental, Physical, or Biological Performance Objectives. During summer and fall 2020, we PIT-tagged 1,415 Steelhead parr (age-0 and age-1) in the Trout Creek and upper Wind River watersheds. Recaptures and detections of PIT-tagged Steelhead Trout parr happened through repeat headwater sampling, smolt trap operations, and instream PTISs and Columbia River PIT-tag detection infrastructure. Throughout the year, we maintained a series of six instream PTISs to monitor movement of tagged Steelhead Trout parr, smolts, and adults, providing data to population assessments, and life-cycle research and modeling. Detection data from PIT-tagged adult Steelhead Trout at PTISs allow assessment of adult escapement to tributary watersheds within the Wind River subbasin. Adult Steelhead Trout detection efficiency estimates at our primary PTIS in Trout Creek have been greater than 92 percent during eight of the past nine years and have exceeded 90% at our primary PTIS in the Wind River the past three years. Adult escapement estimates to tributary watersheds are helping evaluate the efficacy of the 2009 removal of Hemlock Dam from rkm 2.0 of Trout Creek. The dam had potential negative effects on Steelhead Trout populations in Trout Creek due to hydrologic impairment, increased temperatures, and adult passage issues. Hemlock Dam was laddered for adult passage, but not to modern standards, which likely resulted in avoidance by some adult Steelhead Trout. We continue to improve our PTISs in the Wind River subbasin. The improvements in siting and addition of grid power to the upper Wind River PTIS (site code WRU, rkm 27.6) during 2016 and 2017, and the addition of the Mine Reach site (site code MIN, rkm 36.0) have much improved PIT-tagged fish monitoring in the upper Wind River watershed. The paired PTIS design in the upper Wind River watershed (sites WRU and MIN), matches that in the Trout Creek watershed (sites TRC and TC4) and will allow comparisons of Steelhead Trout population metrics between the two watersheds as response to Hemlock Dam removal continues and future restoration efforts occur in Trout Creek. We installed two new PTISs during 2020. Both were installed downstream of our primary interrogation sites on Trout Creek and in the mainstem Wind River. We hope the two new sites will provide interrogations information that will allow us to better estimate detection efficiencies of downstream moving juvenile Steelhead Trout at the primary interrogation sites. The additional interrogations will be particularly important for those fish tagged with 9-mm PIT tags as less information from downstream locations is available from them. These sites and other status and trend data will allow evaluation of further planned restoration within the watershed, particularly that proposed for the headwaters of Trout Creek. Detections at the instream PTISs have demonstrated trends of age-0 and age-1 parr emigration from natal areas during summer and fall, in addition to the expected movement of parr and smolts in spring. We have estimated that from 15 to 51% of parr tagged as age-0 fish in headwater areas make downstream migrations at age 1 for additional rearing during both spring and fall. We have estimated that up to 27% of Steelhead Trout parr, tagged as age-1 fish, make downstream migrations during fall. These findings raise questions about where parr most successfully rear and whether migrations are density or habitat quality driven. Broader monitoring programs would give a more comprehensive understanding of juvenile Steelhead Trout production and rearing and productivity contribution. Repeat sampling at consistent locations in the subbasin has enabled assessment of juvenile Steelhead Trout growth patterns. Growth rates (relative change in weight) of age-0 PITtagged parr during summer were similar across the subbasin but lower for age-1 parr in the Trout Creek watershed than the upper Wind River watershed. Yearly relative growth for parr tagged at age-0 is similar across the subbasin. Non-native Brook Trout Salvelinus confluentus are present in the subbasin, chiefly the Trout Creek watershed, and repeat sampling has allowed us to index their prevalence. Mean percent-of-catch that is Brook Trout, at four sample sites in Trout Creek, has declined from the period 1998 – 2003 to the period 2011 – 2020. Percent-of-catch and number of Brook Trout at the Trout Creek sites from 2011 through 2020 declined, though both metrics increased in 2018. Evaluation and planning of restoration efforts are critical to ensure efficient use of resources. Assessing Steelhead Trout life history variation in the Wind River subbasin will inform research and tracking of many populations and help inform habitat restoration and water allocation planning. Movement of Steelhead Trout parr from natal areas to other rearing areas raises questions regarding juvenile abundance, origin, and habitat use within watersheds. Improved PTISs and focused PIT tagging of age-0 and age-1 Steelhead Trout parr allow investigation of such questions. Increasingly detailed viable salmonid population information, such as that provided by PIT-tagging and instream PTIS networks like those in the Wind River can provide data to inform fisheries policy and management and understand life-history strategies and limiting factors. Such efforts also provide assessment of long-term effects of habitat restoration actions such as the removal of Hemlock Dam on Trout Creek, and the proposed Stage-0 restoration effort for upper Trout Creek, which would be a large-scale effort to reset sections of stream within their floodplain, restoring connectivity and interaction with surrounding landscape.

Washington↗

USGS1998

Overview of the International Symposium on Eurasian Ruffe ( Gymnocephalus cernuus ) Biology, Impacts, and Control

The International Symposium on the Biology and Management of Ruffe was organized to address the potential threat ruffe pose to North American fisheries. Scientists in diverse disciplines from Eurasia and North America were brought together in an attempt to examine all aspects of the North American invasion of ruffe, and to highlight the effects of similar introductions in Europe and Asia. The symposium, sponsored by the Minnesota and Michigan Sea Grant College programs, featured 48 oral and poster presentations and was held in Ann Arbor, Michigan, during 21-23 March 1997. Papers from the symposium are published in a special section of this issue of the Journal of Great Lakes Research.

Journal of Great Lakes Research↗

USGS2011

Cold-water coral distributions in the Drake Passage area from towed camera observations - Initial interpretations

Seamounts are unique deep-sea features that create habitats thought to have high levels of endemic fauna, productive fisheries and benthic communities vulnerable to anthropogenic impacts. Many seamounts are isolated features, occurring in the high seas, where access is limited and thus biological data scarce. There are numerous seamounts within the Drake Passage (Southern Ocean), yet high winds, frequent storms and strong currents make seafloor sampling particularly difficult. As a result, few attempts to collect biological data have been made, leading to a paucity of information on benthic habitats or fauna in this area, particularly those on primarily hard-bottom seamounts and ridges. During a research cruise in 2008 six locations were examined (two on the Antarctic margin, one on the Shackleton Fracture Zone, and three on seamounts within the Drake Passage), using a towed camera with onboard instruments to measure conductivity, temperature, depth and turbidity. Dominant fauna and bottom type were categorized from 200 randomized photos from each location. Cold-water corals were present in high numbers in habitats both on the Antarctic margin and on the current swept seamounts of the Drake Passage, though the diversity of orders varied. Though the Scleractinia (hard corals) were abundant on the sedimented margin, they were poorly represented in the primarily hard-bottom areas of the central Drake Passage. The two seamount sites and the Shackleton Fracture Zone showed high numbers of stylasterid (lace) and alcyonacean (soft) corals, as well as large numbers of sponges. Though data are preliminary, the geological and environmental variability (particularly in temperature) between sample sites may be influencing cold-water coral biogeography in this region. Each area observed also showed little similarity in faunal diversity with other sites examined for this study within all phyla counted. This manuscript highlights how little is understood of these isolated features, particularly in Polar regions.

PLoS ONE↗

USGS2019

Contemporary environmental assessment using a viability analysis in a large river system to inform restoration and adaptive management decisions

As large-scale restoration plans for degraded aquatic habitats evolve, it is essential that multiorganizational collaborations have a common vision to achieve consensus on restoration goals. Development of restoration targets and postrestoration monitoring strategies can be focused using a viability analysis framework that supports an adaptive management process. Viability analysis is a robust and accommodating framework, adaptable to any restoration monitoring program and, through the determination of common desired endpoints, can aid consensus building and collaboration across jurisdictional boundaries. In the St. Clair-Detroit River System, which is the Great Lakes connecting channel between southern Lake Huron and western Lake Erie, a viability analysis framework was used to evaluate environmental parameters associated with fisheries and aquatic restoration efforts and to gauge the overall health of the aquatic environment. Steps to derive the viability analysis were as follows: (1) establishing meaningful baseline metrics, (2) identifying information deficiencies, and (3) placing the context of current conditions into a usable format for managers and practitioners. Most geographic segments were designated in overall fair condition, and the conservation targets were designated in either good or fair condition, based on available assessed indicators. Many indicators were unable to be assessed or assigned condition status, which identified research and monitoring data gaps. Metrics associated with native migratory fishes, Lake St. Clair, and islands are generally in better condition than metrics associated with the coastal terrestrial systems, aerial migrants, and coastal wetlands. These results were not unexpected given the highly urbanized landscape of the St. Clair-Detroit River System. Resource managers in the corridor can use these results to identify knowledge gaps, research and restoration priorities, and to assess progress towards meeting restoration goals.

Michigan, Ontario↗

USGS1989

Structural marsh management research priorities

The paper presents a prioritized list of research issues related to structural marsh management developed by a multidisciplinary panel of regulatory agency representatives, landowners, and scientists. More than 75 issues were identified concerning landscape changes, influence on ecological processes (i.e., hydrologic, biologic, and edaphic factors), habitat quality, cumulative impacts, and management approach. These issues were prioritized and organized around six basic questions regulatory personnel must try to answer for each marsh management plan application. The six questions deal with the influence of marsh management on, in order of most immediate need, marsh loss and health, fisheries, wildlife, habitat change, water quality, and cumulative effects.

Conference Paper↗

USGS2024

Wind River Subbasin Restoration Annual Report of USGS Activities January 2021 through December 2022

We sampled juvenile wild Steelhead Trout Oncorhynchus mykiss in headwater streams of the Wind River, WA, to characterize population attributes and investigate life-history metrics, particularly migratory patterns, and early life-stage survival. We used passive integrated transponder (PIT) tagging and a series of instream PIT-tag interrogation systems (PTISs) to track juveniles and adults. The Wind River subbasin is considered a wild Steelhead refuge by Washington Department of Fish and Wildlife (WDFW). No hatchery Steelhead Trout have been released in the Wind River subbasin since 1997, and hatchery adults are estimated at less than one percent of spawners in most years. Over twenty years of Steelhead Trout status and trend monitoring and research in the subbasin is contributing to understanding of population response to numerous restoration actions in the subbasin, including removal of Hemlock Dam from Trout Creek in 2009, which had an outdated adult ladder and contributed to increased water temperatures reducing performance of juvenile Steelhead Trout. Data from our study, and companion work by Washington Department of Fish and Wildlife, are contributing to Bonneville Power Administrations (BPA) Research, Monitoring, and Evaluation (RM&E) Program Strategy of Fish Population Status Monitoring (https://www.cbfish.org/ProgramStrategy.mvc/Index). Specifically, this work addresses the sub-strategies of 1) Assessing the Status and Trends of Diversity of Natural Origin Fish Populations and Uncertainties Research regarding differing life histories of a wild Steelhead Trout population, 2) Assessing the Status and Trend of Adult Natural Origin Fish Populations, and 3) Monitoring and Evaluating the Effectiveness of Tributary Habitat Actions Relative to Environmental, Physical, or Biological Performance Objectives. During summer and fall 2021 and 2022, we PIT-tagged 1,889 and 1,391 Steelhead parr (age-0 and age-1), respectively, in the Trout Creek and upper Wind River watersheds. Age-0 parr were at lower densities in 2022 than many years due to a poor return of adult Steelhead spawners in 2022. Steelhead Trout parr were recaptured and detected through repeat headwater sampling, smolt trap operations, and instream PTISs and Columbia River PIT-tag detection infrastructure. We maintained, and upgraded in 2022, a series of six instream PTISs to monitor movement of tagged Steelhead Trout parr, smolts, and adults, providing data to population assessments, and life-cycle research and modeling. We continue to improve our PTISs in the Wind River subbasin. The improvements in siting and addition of grid power to the upper Wind River PTIS (site code WRU, rkm 27.6) during 2016 and 2017, and the addition of the Mine Reach site (site code MIN, rkm 36.0) have much improved PIT-tagged fish monitoring in the upper Wind River watershed. The paired PTIS design in the upper Wind River watershed (sites WRU and MIN) matches that in the Trout Creek watershed (sites TRC, rkm 2.0; and TC4, rkm 11.5) and will allow comparisons of Steelhead Trout population metrics between the two watersheds as response to Hemlock Dam removal continues and future restoration efforts occur in Trout Creek. During summer 2022, we upgraded three PTISs with new transceivers and new or reconfigured antennas. We replaced the Biomark 1001 Multiplexing Transceivers with Biomark MTS IS1001 Master Controller and individual IS1001 Transceivers at WRU, TRC (Trout Creek, rkm 2.0), and TC4 (Trout Creek at 43 Road Bridge, rkm 11.5). These new transceivers and antennas will improve detection performance due to increased read range and decreased susceptibility to noise. We also installed an additional IS1001 Transceiver and 11-foot antenna at WRA in summer 2021 to increase cross-channel and water column coverage. Detection data from PIT-tagged adult Steelhead Trout at PTISs allow assessment of adult escapement to tributary watersheds within the Wind River subbasin. Adult Steelhead Trout detection efficiency estimates at our primary PTIS in Trout Creek have been greater than 99 percent during six of the past eight years and have exceeded 97% at our primary PTIS in the Wind River during seven of the past eight years. Adult escapement estimates to tributary watersheds are helping us evaluate the efficacy of the 2009 removal of Hemlock Dam from rkm 2.0 of Trout Creek. The dam had potential negative effects on Steelhead Trout populations in Trout Creek due to hydrologic impairment, increased temperatures, and adult passage issues. Hemlock Dam was laddered for adult passage, but not to modern standards, which likely resulted in avoidance by some adult Steelhead Trout. Detections at the instream PTISs have demonstrated trends of age-0 and age-1 parr emigration from natal areas during summer and fall, in addition to the expected movement of parr and smolts in spring. We have estimated that from 15 to 51% of parr tagged as age-0 fish in headwater areas make downstream migrations at age 1 for additional rearing. Downstream movement occurs primarily during spring but also in fall. We have estimated that up to 27% of Steelhead Trout parr, tagged as age-1 fish, make downstream migrations during fall. Fall migration of age-1 parr has been more common in the upper Wind River watershed than the Trout Creek watershed. These findings raise questions about where parr most successfully rear and whether migrations are density- or habitat-quality driven. Broader monitoring programs would give a more comprehensive understanding of juvenile Steelhead Trout production and rearing and contributions to adult recruitment from varied rearing strategies. Repeat sampling at consistent locations in the subbasin has enabled assessment of juvenile Steelhead Trout growth patterns. Growth rates (relative change in weight) of age-0 PIT-tagged parr during summer were similar across the subbasin, though slightly lower in the Trout Creek watershed. The greatest summer growth rate was in the mainstem of the Wind River (rkm 37 and 41). Summer growth rates were lower for age-1 parr in the Trout Creek watershed than the upper Wind River watershed. Yearly relative growth was similar across the subbasin for both age-0 and age-1 tagged parr. Lower Layout Creek had the highest yearly growth rate of parr from age-0 to age-1. Mainstem Wind River (rkm 37) had the highest yearly growth rate of parr from age-1 to age-2. Non-native Brook Trout Salvelinus fontinalis are present in the subbasin, chiefly the Trout Creek watershed, and repeat sampling provides an index of their prevalence. Mean percent-of-catch that is Brook Trout, at four sample sites in Trout Creek, has declined from the period 1998 2003 to the period 2011 2022. Percent-of-catch and number of Brook Trout at the Trout Creek sites from 2011 through 2022 has generally declined, though both metrics have been somewhat variable. Evaluation and planning of habitat restoration efforts are critical to ensure efficient use of money and resources. Assessing Steelhead Trout life history variation in the Wind River subbasin will inform research and tracking of many populations and help inform habitat restoration and water allocation planning. Movement of Steelhead Trout parr from natal areas to other rearing areas raises questions regarding juvenile abundance, origin, and habitat use within watersheds. Improved PTISs and focused PIT-tagging of age-0 and age-1 Steelhead Trout parr allow investigation of such questions. Increasingly detailed viable salmonid population information, such as that provided by PIT-tagging and instream PTIS networks like those in the Wind River, can provide data to inform fisheries policy and management and understand life-history strategies and limiting factors. Such efforts also enable assessment of long-term effects of habitat restoration actions such as the removal of Hemlock Dam on Trout Creek, and the proposed Stage-0 restoration effort for upper Trout Creek, which would be a large-scale effort to reset sections of stream within their floodplain, restoring connectivity and interaction with surrounding landscape.

Report↗

USGS2013

Channel unit use by Smallmouth Bass: Do land-use constraints or quantity of habitat matter?

I examined how land use influenced the distribution of Smallmouth Bass Micropterus dolomieu in channel units (discrete morphological features—e.g., pools) of streams in the Midwestern USA. Stream segments ( n = 36), from four clusters of different soil and runoff conditions, were identified that had the highest percent of forest ( n = 12), pasture ( n = 12), and urban land use ( n = 12) within each cluster. Channel units within each stream were delineated and independently sampled once using multiple gears in summer 2006. Data were analyzed using a generalized linear mixed model procedure with a binomial distribution and odds ratio statistics. Land use and channel unit were strong predictors of age-0, age-1, and age->1 Smallmouth Bass presence. Each age-class was more likely to be present in streams within watersheds dominated by forest land use than in those with pasture or urban land uses. The interaction between land use and channel unit was not significant in any of the models, indicating channel unit use by Smallmouth Bass did not depend on watershed land use. Each of the three age-classes was more likely to use pools than other channel units. However, streams with high densities of Smallmouth Bass age >1 had lower proportions of pools suggesting a variety of channel units is important even though habitat needs exist at the channel-unit scale. Management may benefit from future research addressing the significance of channel-unit quality as a possible mechanism for how land use impacts Smallmouth Bass populations. Further, management efforts aimed at improving stream habitat would likely be more beneficial if focused at the stream segment or landscape scale, where a variety of quality habitats might be supported.

MIssouri↗

USGS2003

Development of a multimetric index for assessing the biological condition of the Ohio River

The use of fish communities to assess environmental quality is common for streams, but a standard methodology for large rivers is as yet largely undeveloped. We developed an index to assess the condition of fish assemblages along 1,580 km of the Ohio River. Representative samples of fish assemblages were collected from 709 Ohio River reaches, including 318 "least-impacted" sites, from 1991 to 2001 by means of standardized nighttime boat-electrofishing techniques. We evaluated 55 candidate metrics based on attributes of fish assemblage structure and function to derive a multimetric index of river health. We examined the spatial (by river kilometer) and temporal variability of these metrics and assessed their responsiveness to anthropogenic disturbances, namely, effluents, turbidity, and highly embedded substrates. The resulting Ohio River Fish Index (ORFIn) comprises 13 metrics selected because they responded predictably to measures of human disturbance or reflected desirable features of the Ohio River. We retained two metrics (the number of intolerant species and the number of sucker species [family Catostomidae]) from Karr's original index of biotic integrity. Six metrics were modified from indices developed for the upper Ohio River (the number of native species; number of great-river species; number of centrarchid species; the number of deformities, eroded fins and barbels, lesions, and tumors; percent individuals as simple lithophils; and percent individuals as tolerant species). We also incorporated three trophic metrics (the percent of individuals as detritivores, invertivores, and piscivores), one metric based on catch per unit effort, and one metric based on the percent of individuals as nonindigenous fish species. The ORFIn declined significantly where anthropogenic effects on substrate and water quality were prevalent and was significantly lower in the first 500 m below point source discharges than at least-impacted sites nearby. Although additional research on the temporal stability of the metrics and index will likely enhance the reliability of the ORFIn, its incorporation into Ohio River assessments still represents an improvement over current physicochemical protocols.

Transactions of the American Fisheries Society↗

USGS1963

Publications on fish parasites and diseases, 330 B.C.-A.D

These references were collected in 1924, but until now this collection has been available only in manuscript form. Because of the current increased interest in this field, this bibliography is being issued to make it more generally accessible. They include the earliest known references to fish parasites (330 B.C.) as well as a nearly complete collection up to 1924. In some instances only one or two works of a more prolific researcher are cited, therefore it is recommended that the student use the Index-Catalogue of Medical and Veterinary Zoology (U. S. Department of Agriculture) freely. For more current work consult the following, of which Dogiel et al.(1958), Hoffman and Sindermann (1962), Schaperclaus (1954), and Snieszko et aL(in press) have extensive bibliographies:

Special Scientific Report - Fisheries↗

USGS2020

The role of sand lances (Ammodytes sp.) in the Northwest Atlantic Ecosystem: A synthesis of current knowledge with implications for conservation and management

The American sand lance ( Ammodytes americanus , Ammodytidae) and the Northern sand lance ( A. dubius , Ammodytidae) are small forage fishes that play an important functional role in the Northwest Atlantic Ocean (NWA). The NWA is a highly dynamic ecosystem currently facing increased risks from climate change, fishing and energy development. We need a better understanding of the biology, population dynamics and ecosystem role of Ammodytes to inform relevant management, climate adaptation and conservation efforts. To meet this need, we synthesized available data on the (a) life history, behaviour and distribution; (b) trophic ecology; (c) threats and vulnerabilities; and (d) ecosystem services role of Ammodytes in the NWA. Overall, 72 regional predators including 45 species of fishes, two squids, 16 seabirds and nine marine mammals were found to consume Ammodytes . Priority research needs identified during this effort include basic information on the patterns and drivers in abundance and distribution of Ammodytes , improved assessments of reproductive biology schedules and investigations of regional sensitivity and resilience to climate change, fishing and habitat disturbance. Food web studies are also needed to evaluate trophic linkages and to assess the consequences of inconsistent zooplankton prey and predator fields on energy flow within the NWA ecosystem. Synthesis results represent the first comprehensive assessment of Ammodytes in the NWA and are intended to inform new research and support regional ecosystem‐based management approaches.

Northwest Atlantic↗

USGS1993

How well can fishes prey on zebra mussels in eastern North America?

Literature on mollusk-eating fishes was reviewed to determine the potential for different species of fish to control zebra mussels in eastern North America. At least six species are potential predators of zebra mussels because they possess (1) both upper and lower pharyngeal teeth or (2) lower pharyngeal teeth and chewing pads located on the dorsal roof for crushing mollusk shells. Freshwater drum ( Aplodinotus grunniens ) and two centrarchids, redear sunfish ( Lepomis microlophus ) and pumpkinseed ( L. gibbosus ), possess both upper and lower pharyngeal teeth and are likely to consume more zebra mussels than fishes with only lower pharyngeal teeth. Only two catostomid species, copper and river redhorses ( Moxostoma hubbsi and M. carinatum ), have chewing pads that enable them to crush mollusks. The exotic omnivorous common carp ( Cyprinus carpio ), possessing lower teeth and a chewing pad, may prey on zebra mussels when aquatic insect larvae, its preferred food, become rare. Managing populations of drum, sunfishes and redhorses to reduce exploitation of large individuals and improve their habitats are suggested as means to intensify biological control of zebra mussels in eastern North America. Other Eurasian molluscivores, the roach ( Rutilus rutilus ) and the black carp ( Mylopharyngodon piceus ) should not be introduced into North America because research has shown repeatedly that an introduced biological controller usually does not forage for unwanted pests or reside only in preferred habitats of pests. Drum, sunfishes and redhorses should be preferred over these exotics as biological controllers of zebra mussels in North America because these native fishes will likely occupy newly established habitats of zebra mussels.

Fisheries↗

USGS2005

The sterile-male-release technique in Great Lakes sea lamprey management

The parasitic sea lamprey (Petromyzon marinus) has been a serious pest since its introduction into the Great Lakes, where it contributed to severe imbalances in the fish communities by selectively removing large predators (Smith 1968; Christie 1974; Schneider et al.1996). Since the 1950s, restoration and maintenance of predator-prey balance has depended on the Great Lakes Fishery Commission (GLFC) sea lamprey management program. Initially, management relied primarily on stream treatments with a selective lampricide to kill larvae, on barriers to migration, and on trapping to remove potential spawners (Smith and Tibbles 1980). By the late 1970s, however, it was clear that the future of sea lamprey management lay in development of a larger array of control strategies, including more alternatives to lampricide applications (Sawyer 1980). Since then the only new alternative to chemical control to reach operational status is the release of sterilized male sea lampreys. Research on the concept began at the USGS, Hammond Bay Biological Station in Millersburg, MI (HBBS) during the 1970s (Hanson and Manion 1980). Development and evaluation continued through the 1980s, leading to the release of sterilized males in Great Lakes tributaries since 1991 (Twohey et al. 2003a). The objectives of this paper are 1) to review the implementation and evaluations of sterile-male-release technique (SMRT) as it is being applied against sea lampreys in the Great Lakes, 2) to review our current understanding of its efficacy, and 3) to identify additional research areas and topics that would increase either the efficacy of SMRT or expand its geographic potential for application.

Report↗

USGS2015

Stock-specific advection of larval walleye ( Sander vitreus ) in western Lake Erie: Implications for larval growth, mixing, and stock discrimination

Physical processes can generate spatiotemporal heterogeneity in habitat quality for fish and also influence the overlap of pre-recruit individuals (e.g., larvae) with high-quality habitat through hydrodynamic advection. In turn, individuals from different stocks that are produced in different spawning locations or at different times may experience dissimilar habitat conditions, which can underlie within- and among-stock variability in larval growth and survival. While such physically-mediated variation has been shown to be important in driving intra- and inter-annual patterns in recruitment in marine ecosystems, its role in governing larval advection, growth, survival, and recruitment has received less attention in large lake ecosystems such as the Laurentian Great Lakes. Herein, we used a hydrodynamic model linked to a larval walleye ( Sander vitreus ) individual-based model to explore how the timing and location of larval walleye emergence from several spawning sites in western Lake Erie (Maumee, Sandusky, and Detroit rivers; Ohio reef complex) can influence advection pathways and mixing among these local spawning populations (stocks), and how spatiotemporal variation in thermal habitat can influence stock-specific larval growth. While basin-wide advection patterns were fairly similar during 2011 and 2012, smaller scale advection patterns and the degree of stock mixing varied both within and between years. Additionally, differences in larval growth were evident among stocks and among cohorts within stocks which were attributed to spatiotemporal differences in water temperature. Using these findings, we discuss the value of linked physical–biological models for understanding the recruitment process and addressing fisheries management problems in the world's Great Lakes.

Journal of Great Lakes Research↗

USGS2016

Physiological basis of climate change impacts on North American inland fishes

Global climate change is altering freshwater ecosystems and affecting fish populations and communities. Underpinning changes in fish distribution and assemblage-level responses to climate change are individual-level physiological constraints. In this review, we synthesize the mechanistic effects of climate change on neuroendocrine, cardiorespiratory, immune, osmoregulatory, and reproductive systems of freshwater and diadromous fishes. Observed climate change effects on physiological systems are varied and numerous, including exceedance of critical thermal tolerances, decreased cardiorespiratory performance, compromised immune function, and altered patterns of individual reproductive investment. However, effects vary widely among and within species because of species, population, and even sex-specific differences in sensitivity and resilience and because of habitat-specific variation in the magnitude of climate-related environmental change. Research on the interactive effects of climate change with other environmental stressors across a broader range of fish diversity is needed to further our understanding of climate change effects on fish physiology.

Fisheries↗

USGS2025

Estimating predation of adult sockeye salmon by American white pelicans in the Columbia River using a state-space Bayesian approach

Adult sockeye salmon ( Oncorhynchus nerka ) migrate past the largest breeding colony of American white pelicans ( Pelecanus erythrorhynchos) in the Columbia River, USA. To investigate the magnitude of pelican predation on sockeye salmon, a state-space Bayesian model was used to estimate spatially and temporally explicit predation and survival probabilities, and to estimate the total number of salmon consumed by pelicans each year. Results show that pelican predation was a substantial source of salmon mortality in some years, with median predation probabilities ranging annually from 0.015 to 0.084, resulting in an estimate of 1328 to 47 265 fish consumed annually from 2014 to 2023. While there was evidence that predation probabilities were associated with the number of sockeye salmon returning to the Columbia River annually, there was no evidence that fish length was associated with susceptibility to predation. Additional research aimed at investigating how other biotic and abiotic factors influence sockeye salmon susceptibility to pelican predation are needed to broaden our understanding of predator–prey interactions and to determine to what degree predation limits sockeye salmon survival prior to spawning.

Washington↗