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Advances in a distributed approach for ocean model data interoperability

An infrastructure for earth science data is emerging across the globe based on common data models and web services. As we evolve from custom file formats and web sites to standards-based web services and tools, data is becoming easier to distribute, find and retrieve, leaving more time for science. We describe recent advances that make it easier for ocean model providers to share their data, and for users to search, access, analyze and visualize ocean data using MATLAB® and Python®. These include a technique for modelers to create aggregated, Climate and Forecast (CF) metadata convention datasets from collections of non-standard Network Common Data Form (NetCDF) output files, the capability to remotely access data from CF-1.6-compliant NetCDF files using the Open Geospatial Consortium (OGC) Sensor Observation Service (SOS), a metadata standard for unstructured grid model output (UGRID), and tools that utilize both CF and UGRID standards to allow interoperable data search, browse and access. We use examples from the U.S. Integrated Ocean Observing System (IOOS®) Coastal and Ocean Modeling Testbed, a project in which modelers using both structured and unstructured grid model output needed to share their results, to compare their results with other models, and to compare models with observed data. The same techniques used here for ocean modeling output can be applied to atmospheric and climate model output, remote sensing data, digital terrain and bathymetric data.

Journal of Marine Science and Engineering↗

Integration of remote sensing and GIS: Data and data access

CT: Theintegration of remote sensing tools and technology with the spatial analysis orientation of geographic information systems is a complex task. In this paper, we focus on the issues of making data available and useful to the user. In part, this involves a set of problems which reflect on the physical and logical structures used to encode the data. At the same time, however, the mechanisms and protocols which provide information about the data, and which maintain the data through time, have become increasingly important. We discuss these latter issues from the viewpoint of the functions which must be provided by archives of spatial data.

Photogrammetric Engineering and Remote Sensing↗

Characterization of the structural–stratigraphic and reservoir controls on the occurrence of gas hydrates in the Eileen Gas Hydrate Trend, Alaska North Slope

One of the most studied permafrost-associated gas hydrate accumulations in Arctic Alaska is the Eileen Gas Hydrate Trend. This study provides a detailed re-examination of the Eileen Gas Hydrate Trend with a focus on the gas hydrate accumulation in the western part of the Prudhoe Bay Unit. This integrated analysis of downhole well log data and published geophysical data has provided new insight on structural, stratigraphic, and reservoir controls on the occurrence of gas hydrates in the Eileen Gas Hydrate Trend. This study revealed the relatively complex nature of the gas hydrate occurrences in the Eileen Gas Hydrate Trend, with gas hydrates present in a series of coarsening upward, laterally pervasive, mostly fine-grained sand beds exhibiting high gas hydrate saturations. Most of the gas hydrate-bearing reservoirs in the Eileen Gas Hydrate Trend are laterally segmented into distinct northwest- to southeast-trending fault blocks, occur in a combination of structural–stratigraphic traps, and are only partially hydrate filled with distinct down-dip water contacts. These findings suggest that the traditional parts of a petroleum system (i.e., reservoir, gas source, gas migration, and geologic timing of the system formation) also control the occurrence of gas hydrates in the Eileen Gas Hydrate Trend.

Alaska↗

Well-construction, water-level, and water-quality data for ground-water monitoring wells for the J4 hydrogeologic study, Arnold Air Force Base, Tennessee

Between December 1993 and March 1994, 27 wells were installed at 12 sites near the J4 test cell at Arnold Engineering Development Center in Coffee County, Tennessee. The wells ranged from 28 to 289 feet deep and were installed to provide information on subsurface lithology, aquifer characteristics, ground-water levels, and ground-water quality. This information will be used to help understand the effects of dewatering operations at the J4 test cell on the local ground-water-flow system. The J4 test cell, extending approximately 250 feet below land surface, is used in the testing of rocket motors. Ground water must be pumped continuously from around the test cell to keep it structurally intact. The amount of water discharged from the J4 test cell was monitored to estimate the average rate of ground-water withdrawal at the J4 test cell. Ground- water levels were monitored continuously at 14 wells for 12 months. Water-quality samples were collected from 26 of the new wells, 9 existing wells, and the ground-water discharge from the J4 test cell. All samples were analyzed for common inorganic ions, trace metals, and volatile organic compounds.

Tennessee↗

Barrier island habitat map and vegetation survey—Dauphin Island, Alabama, 2015

Barrier islands are dynamic environments due to their position at the land-sea interface. Storms, waves, tides, currents, and relative sea-level rise are powerful forces that shape barrier island geomorphology and habitats (for example, beach, dune, marsh, and forest). Hurricane Katrina in 2005 and the Deep Water Horizon oil spill in 2010 are two major events that have affected habitats and natural resources on Dauphin Island, Alabama. The latter event prompted a collaborative effort between the U.S. Geological Survey, the U.S. Army Corps of Engineers, and the State of Alabama funded by the National Fish and Wildlife Foundation to investigate viable, sustainable restoration options that protect and restore the natural resources of Dauphin Island, Alabama. In order to understand the feasibility and sustainability of various restoration scenarios, it is important to understand current conditions on Dauphin Island. To further this understanding, a detailed 19-class habitat map for Dauphin Island was produced from 1-foot aerial infrared photography collected on December 4, 2015, and lidar data collected in January 2015. We also conducted a ground survey of habitat types, vegetation community structure, and elevations in November and December 2015. These products provide baseline data regarding the ecological and general geomorphological attributes of the area, which can be compared with observations from other dates for tracking changes over time.

Alabama↗

X-ray scattering and spectroscopy studies on diesel soot from oxygenated fuel under various engine load conditions

Diesel soot from reference diesel fuel and oxygenated fuel under idle and load engine conditions was investigated with X-ray scattering and X-ray carbon K-edge absorption spectroscopy. Up to five characteristic size ranges were found. Idle soot was generally found to have larger primary particles and aggregates but smaller crystallites, than load soot. Load soot has a higher degree of crystallinity than idle soot. Adding oxygenates to diesel fuel enhanced differences in the characteristics of diesel soot, or even reversed them. Aromaticity of idle soot from oxygenated diesel fuel was significantly larger than from the corresponding load soot. Carbon near-edge X-ray absorption fine structure (NEXAFS) spectroscopy was applied to gather information about the presence of relative amounts of carbon double bonds (CC, CO) and carbon single bonds (C-H, C-OH, COOH). Using scanning X-ray transmission microspectroscopy (STXM), the relative amounts of these carbon bond states were shown to vary spatially over distances approximately 50 to 100 nm. The results from the X-ray techniques are supported by thermo-gravimetry analysis and high-resolution transmission electron microscopy. ?? 2005 Elsevier Ltd. All rights reserved.

Carbon↗

Chapter A. The Loma Prieta, California, Earthquake of October 17, 1989 - Lifelines

To the general public who had their televisions tuned to watch the World Series, the 1989 Loma Prieta earthquake was a lifelines earthquake. It was the images seen around the world of the collapsed Cypress Street viaduct, with the frantic and heroic efforts to pull survivors from the structure that was billowing smoke; the collapsed section of the San Francisco-Oakland Bay Bridge and subsequent home video of a car plunging off the open span; and the spectacular fire in the Marina District of San Francisco fed by a broken gasline. To many of the residents of the San Francisco Bay region, the relation of lifelines to the earthquake was characterized by sitting in the dark because of power outage, the inability to make telephone calls because of network congestion, and the slow and snarled traffic. Had the public been aware of the actions of the engineers and tradespeople working for the utilities and other lifeline organizations on the emergency response and restoration of lifelines, the lifeline characteristics of this earthquake would have been even more significant. Unobserved by the public were the warlike devastation in several electrical-power substations, the 13 miles of gas-distribution lines that had to be replaced in several communities, and the more than 1,200 leaks and breaks in water mains and service connections that had to be excavated and repaired. Like the 1971 San Fernando, Calif., earthquake, which was a seminal event for activity to improve the earthquake performance of lifelines, the 1989 Loma Prieta earthquake demonstrated that the tasks of preparing lifelines in 'earthquake country' were incomplete-indeed, new lessons had to be learned.

Professional Paper↗

GEM Building Taxonomy (Version 2.0)

This report documents the development and applications of the Building Taxonomy for the Global Earthquake Model (GEM). The purpose of the GEM Building Taxonomy is to describe and classify buildings in a uniform manner as a key step towards assessing their seismic risk, Criteria for development of the GEM Building Taxonomy were that the Taxonomy be relevant to seismic performance of different construction types; be comprehensive yet simple; be collapsible; adhere to principles that are familiar to the range of users; and ultimately be extensible to non-buildings and other hazards. The taxonomy was developed in conjunction with other GEM researchers and builds on the knowledge base from other taxonomies, including the EERI and IAEE World Housing Encyclopedia, PAGER-STR, and HAZUS. The taxonomy is organized as a series of expandable tables, which contain information pertaining to various building attributes. Each attribute describes a specific characteristic of an individual building or a class of buildings that could potentially affect their seismic performance. The following 13 attributes have been included in the GEM Building Taxonomy Version 2.0 (v2.0): 1.) direction, 2.)material of the lateral load-resisting system, 3.) lateral load-resisting system, 4.) height, 5.) date of construction of retrofit, 6.) occupancy, 7.) building position within a block, 8.) shape of the building plan, 9.) structural irregularity, 10.) exterior walls, 11.) roof, 12.) floor, 13.) foundation system. The report illustrates the pratical use of the GEM Building Taxonomy by discussing example case studies, in which the building-specific characteristics are mapped directly using GEM taxonomic attributes and the corresponding taxonomic string is constructed for that building, with "/" slash marks separating attributes. For example, for the building shown to the right, the GEM Taxonomy string is: DX 1 /MUR+CLBRS+MOCL 2 /LWAL 3 / DY/MUR+CLBRS+MOCL/LWAL/YPRE:1939 4 /HEX:2 5 /RES 6 / 7 / 8 /IRRE 9 /10/RSH3+RWO2 11 /FW 12 / 13 / which can be read as (1) Direction = [DX or DY] (the building has the same lateral load-resisting system in both directions); (2) Material = [Unreinforced Masonry + solid fired clay bricks + cement: lime mortar]; (3) Lateral Load-Resisting System = [Wall]; (4) Date of construction = [pre-1939]; (5) Heaight = [exactly 2 storeys]; (6) Occupancy = [residential, unknown type]; (7) Building Position = [unknown = no entry]; (8) Shape of building plan = [unknown = no entry]; (9) Structural irregularity = [regular]; (10) Exterior walls = [unknown = no entry]; (11) Roof = [Shape: pitched and hipped, Roof covering: clay tiles, Roof system material: wood, Roof system type: wood trusses]; (12) Floor = [Floor system: Wood, unknown]; (13) Foundation = [unknown = no entry]. Mapping of GEM Building Taxonomy to selected taxonomies is included in the report -- for example, the above building would be referenced by previous structural taxonomies as: PAGER-STR as UFB or UFB4, by the World Housing Encyclopedia as 7 or 8 and by the European Macroseismic Scale (98) as M5. The Building Taxonomy data model is highly flexible and has been incorporated within a relational database architecture. Due to its ability to represent building typologies using a shorthand form, it is also possible to use the taxonomy for non-database applications, and we discuss possible application of adaptation for Building Information Modelling (BIM) systems, and for the insurance industry. The GEM Building Taxonomy was independently evaluated and tested by the Earthquake Engineering Research Institute (EERI), which received 217 TaxT reports from 49 countries, representing a wide range of building typologies, including single and multi-storey buildings, reinforced and unreinforced masonry, confined masonry, concrete, steel, wood, and earthern buildings used for residential, commercial, industrial, and educational occupancy. Based on these submissions and other feedback, the EERI team validated that the GEM Building Taxonomy is highly functional, robust and able to describe different buildings around the world. The GEM Building Taxonomy is accompanied by supplementary resources. All terms have been explained in a companion online Glossary, which provides both text and graphic descriptions. The Taxonomy is accompanied by TaxT, a computer application that enables a user record information about a building or a building typology using the attributes of the GEM Building Taxonomy v2.0. TaxT can generate a taxonomy string and enable a user to generate a report in PDF format which summarizes the attribute values (s)he has chosen as representative of the building typology under consideration. The report concludes with recommendations for future development of the GEM Building Taxonomy. Appendices provide the detailed GEM Building Taxonomy tables and additional resource, as well as mappings to other taxonomies.

GEM Technical Report↗

The role of local soil-induced amplification in the 27 July 1980 northeastern Kentucky earthquake

Amplification of earthquake ground motions by near-surface soil deposits was believed to have occurred in Maysville, Kentucky, U.S.A. during the northeast Kentucky (Sharpsburg) earthquake (mb,Lg 5.3) of July 27, 1980. The city of Maysville, founded on approximately 30 m of Late Quaternary Ohio River flood plain alluvium, was 52 km from the epicenter, but experienced equivalent or higher Modified Mercalli Intensity (MMI) VII, compared with the epicentral area of the earthquake (i.e., MMI VI-VII). In this study, dynamic soil properties were obtained at 10 sites in Maysville using seismic P-wave and S-wave (SH-mode) refraction and reflection methods. Synthetically generated composite time histories and limited geotechnical information, along with the measured dynamic properties, were used to perform one-dimensional linear-equivalent amplification analyses. The results indicated the soils generated ground-motion amplification factors between 3.0 and 6.0 and at a frequency range between 2.0 and 5.0 Hz (0.2 to 0.5 s). The building damage in Maysville from the Sharpsburg earthquake was predominantly found in one- to three-story masonry structures. The estimated fundamental period for one- to three-story masonry buildings is approximately 0.11 to 0.26 s (3.8 to 9 Hz). These correlations suggest the elevated ground motion intensity in Maysville can be accounted for by near-surface soil-amplification effects and resonance of the ground motion by the buildings (i.e., double resonance).

Environmental & Engineering Geoscience↗

Strong motion observations and recordings from the great Wenchuan Earthquake

The National Strong Motion Observation Network System (NSMONS) of China is briefly introduced in this paper. The NSMONS consists of permanent free-field stations, special observation arrays, mobile observatories and a network management system. During the Wenchuan Earthquake, over 1,400 components of acceleration records were obtained from 460 permanent free-field stations and three arrays for topographical effect and structural response observation in the network system from the main shock, and over 20,000 components of acceleration records from strong aftershocks occurred before August 1, 2008 were also obtained by permanent free-field stations of the NSMONS and 59 mobile instruments quickly deployed after the main shock. The strong motion recordings from the main shock and strong aftershocks are summarized in this paper. In the ground motion recordings, there are over 560 components with peak ground acceleration (PGA) over 10 Gal, the largest being 957.7 Gal. The largest PGA recorded during the aftershock exceeds 300 Gal. ?? 2008 Institute of Engineering Mechanics, China Earthquake Administration and Springer-Verlag GmbH.

Earthquake Engineering and Engineering Vibration↗

Variability in wood-frame building damage using broad-band synthetic ground motions: a comparative numerical study with recorded motions

Earthquake damage to light-frame wood buildings is a major concern for North America because of the volume of this construction type. In order to estimate wood building damage using synthetic ground motions, we need to verify the ability of synthetically generated ground motions to simulate realistic damage for this structure type. Through a calibrated damage potential indicator, four different synthetic ground motion models are compared with the historically recorded ground motions at corresponding sites. We conclude that damage for sites farther from the fault (>20 km) is under-predicted on average and damage at closer sites is sometimes over-predicted.

Journal of Earthquake Engineering↗

Complex landslide patterns explained by local intra-unit variability of stratigraphy and structure: Case study in the Tyee Formation, Oregon, USA

Lithology and geologic structure are important controls on landslide susceptibility and are incorporated into many regional landslide hazard models. Typically, metrics for mapped geologic units are used as model input variables and a single set of values for material strength are assumed, regardless of spatial heterogeneities that may exist within a map unit. Here we describe how differences in bedding thickness, grain size, inferred uniaxial compressive strength, and bedding dip control the inherent susceptibility of slopes to deep-seated failure within a single mapped geologic unit - the Tyee Formation of Oregon, USA. The Tyee, which covers over 15,000 km2 and underlies much of the Oregon Coast Range, comprises gently folded alternating beds of sandstone and siltstone deposited as turbidites, forming a 2-km thick Eocene submarine fan which has been uplifted and exhumed through the Cenozoic. Deep-seated landslides are widespread in the Tyee, but form a complex spatial pattern such that landslide density ranges from 0 to 24% of the total landscape area. These slides are often extensive and sufficiently deep to reduce local hillslope gradients, resulting in a strong negative correlation between landslide density and mean local slope. Mean annual precipitation and predicted strong ground motions from Cascadia earthquake scenarios also fail to explain the spatial distribution of deep-seated landslides. Consequently, landslide stability models, which are strongly influenced by landscape slope, pore-water pressure, and seismic acceleration, yield landslide susceptibility maps which are broadly anti-correlated with mapped deep-seated landslide density. Through a multivariable linear regression model, we show that much of the variance in deep-seated landslide density can be explained by variability of intra-unit stratigraphic and structural characteristics, which we measure at 128 sites across two study areas totaling ∼3000 km2. Our results suggest bedding dip is only weakly correlated to landslide density, but strongly influences landslide failure style. Subtle increases in bedding dip, even in the gently folded Tyee Formation, result in a substantially higher likelihood of a landslide being cataclinal, or parallel to bedding. Overall, we find a slight majority of landslides fail within these cataclinal slopes, and that these landslides tend to be larger than non-cataclinal landslides. We also show that the lithological and structural properties that influence landslide susceptibility are distinct for these two populations of landslides. Our results demonstrate how localized, intra-unit, geologic variability can exert strong control on landslide susceptibility and failure style. This suggests that in some locations, landslide hazard models could be significantly improved by incorporating detailed, spatially variable, geologic properties rather than relying solely on generalized geologic map units.

Oregon↗

1993 Fiscal Year Water Resources Division Information Guide

This Guide briefly describes the Water Resources Division's mission, program, and organizational structure, and where and how to obtain specific types of hydrologic information. The Guide also contains a listing of addresses, telephone numbers, and office hours for Headquarters, Regional, District, and State offices. For some offices, two addresses are given: the mailing address of the office to which correspondence should be sent and the street address of the office. The map shows the location of the offices.

Guam;Puerto Rico;Virgin Islands↗

Volumetric visualization of multiple-return LIDAR data: Using voxels

Elevation data are an important component in the visualization and analysis of geographic information. The creation and display of 3D models representing bare earth, vegetation, and surface structures have become a major focus of light detection and ranging (lidar) remote sensing research in the past few years. Lidar is an active sensor that records the distance, or range, of a laser usually fi red from an airplane, helicopter, or satellite. By converting the millions of 3D lidar returns from a system into bare ground, vegetation, or structural elevation information, extremely accurate, high-resolution elevation models can be derived and produced to visualize and quantify scenes in three dimensions. These data can be used to produce high-resolution bare-earth digital elevation models; quantitative estimates of vegetative features such as canopy height, canopy closure, and biomass; and models of urban areas such as building footprints and 3D city models.

Photogrammetric Engineering and Remote Sensing↗

The Hayward fault

This field guide consists of eleven stops at sites that illustrate the geological, geophysical, geographic, and engineering aspects of the Hayward fault in the East Bay. Section I (Stops 1–4) consists of stops that are part of the University of California at Berkeley (UC-Berkeley), including research facilities, retrofit of campus buildings, and geomorphic features along the fault. Section II (Stops 5 and 6) consists of stops along the Hayward fault north of the UC-Berkeley main campus, and Section III (stops 7–11) consists of stops related to the Hayward fault south of the UC-Berkeley main campus (Fig. 1 ). Stops are designed to illustrate geomorphic features of the fault, the effects of fault creep on structures sited on the fault, and retrofit design of structures to mitigate potential future deformation due to fault rupture.

California↗

Coastal change during Hurricane Ivan 2004

Category 3 Hurricane Ivan came ashore near Gulf Shores, Alabama, on September 16, 2004. The barrier islands of the northern Gulf of Mexico near the Florida/Alabama border were exposed to the strongest winds. The communities of Gulf Shores, Pine Island and Orange Beach, AL, are, in places, very low lying with their dunes rising up only several meters. These dunes were unable to contain the 3-4 meter storm surge. The U.S. Geological Survey (USGS), National Aeronautics and Space Administration (NASA), and U.S. Army Corps of Engineers (USACE) are cooperating in a research project investigating coastal change during Hurricane Ivan. On Friday September 17, 2004, the USGS acquired oblique aerial photography to help understand the impact of Ivan on the coastal environment. Two days later, airborne lidar was collected using NASA Experimental Advanced Airborne Research Lidar (EAARL). Gulf waters, driven by hurricane force winds spilled across the barrier islands creating currents strong enough to transport massive amounts of sand landward. These waters undermined buildings and roads and opened new island breaches. On top of the surge, breaking waves nearly as tall as the depth of the surge, eroded dunes and battered structures.

Alabama↗

Persistence at distributional edges: Columbia spotted frog habitat in the arid Great Basin, USA

A common challenge in the conservation of broadly distributed, yet imperiled species is understanding which factors facilitate persistence at distributional edges, locations where populations are often vulnerable to extirpation due to changes in climate, land use, or distributions of other species. For Columbia spotted frogs (Rana luteiventris) in the Great Basin (USA), a genetically distinct population segment of conservation concern, we approached this problem by examining (1) landscape-scale habitat availability and distribution, (2) water body-scale habitat associations, and (3) resource management-identified threats to persistence. We found that areas with perennial aquatic habitat and suitable climate are extremely limited in the southern portion of the species’ range. Within these suitable areas, native and non-native predators (trout and American bullfrogs [Lithobates catesbeianus]) are widespread and may further limit habitat availability in upper- and lower-elevation areas, respectively. At the water body scale, spotted frog occupancy was associated with deeper sites containing abundant emergent vegetation and nontrout fish species. Streams with American beaver (Castor canadensis) frequently had these structural characteristics and were significantly more likely to be occupied than ponds, lakes, streams without beaver, or streams with inactive beaver ponds, highlighting the importance of active manipulation of stream environments by beaver. Native and non-native trout reduced the likelihood of spotted frog occupancy, especially where emergent vegetation cover was sparse. Intensive livestock grazing, low aquatic connectivity, and ephemeral hydroperiods were also negatively associated with spotted frog occupancy. We conclude that persistence of this species at the arid end of its range has been largely facilitated by habitat stability (i.e., permanent hydroperiod), connectivity, predator-free refugia, and a commensalistic interaction with an ecosystem engineer. Beaver-induced changes to habitat quality, stability, and connectivity may increase spotted frog population resistance and resilience to seasonal drought, grazing, non-native predators, and climate change, factors which threaten local or regional persistence.

California, Idaho, Oregon, Nevada, Utah↗

Coral reef protection may help avert risks to people, property, and economic activity caused by projected reef degradation

Degradation of coral reefs over the past several decades has caused regional-scale erosion of the shallow seafloor that serves as a protective barrier against coastal hazards along southeast Florida, USA. How future change in coral reefs may affect coastal flooding, however, has been less attended than other factors contributing to increasing risks such as sea-level rise and more intense storms. Here, the increased flooding hazard faced by Florida's coastal communities from the projected future degradation of its adjacent coral reefs is evaluated through oceanographic, coastal engineering, habitat, geospatial, and socioeconomic modeling. Risk-based valuation approaches were followed to map flood zones at 10-m 2 resolution along 430 km of Florida's reef-lined coast for the current and projected future coral reef conditions. The projected degradation of Florida's coral reefs can increase annual flooding to more than 8.77 km 2 of land and 4,980 km of roads, affecting more than 7,315 people, $412.5 million in damages to 1,400 buildings, and economic disruption of $438.1 million annually (2024 US dollars). The degradation of Florida's coral reefs would increase the annual risk to people and structures by more than 42% and 47%, respectively, but is spatially variable due to the heterogeneous alongshore nature and distribution of the reefs and communities: the increased risk exceeds $1 million/km annually to more than 17% of the coastline but also disproportionately would affect vulnerable populations. These results help identify areas where coral reef protection could help reduce the projected increased storm flooding risk to Florida's coastal communities.

Florida↗