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At least 829 records · Page 46Linked to original sources

USGS2023

Striped bass exploitation in tailwater habitats of east-central Oklahoma

Striped Bass (Morone saxatilis) is naturally anadromous, but a few land-locked populations have been documented that are self-sustaining, including fish in the Arkansas River, Oklahoma. This rare population is the source of brood stock for the Oklahoma Department of Wildlife Conservation hatcheries and is an important sportfish stock. Striped Bass often congregate in tailwater habitats, where anecdotal observations indicate anglers can harvest numerous fish daily. This suggests the need to evaluate the sustainability of harvest in these locations. It is unknown what portion of fish from the Arkansas River population use tailwater habitats or the timing and duration of use. The objectives of this study were to: 1) determine size structure , abundance, and total mortality rate of Striped Bass in the tailwaters of Tenkiller Lake and Lake Eufaula; 2) determine the extent and timing of immigration and emigration of Striped Bass in tailwater habitats to determine the potential for overharvest when they congregate in tailwater areas; 3) estimate delayed hooking mortality of Striped Bass in spring and summer; and 4) using the above data and modeling simulations, determine the potential for growth overfishing of Striped Bass in the tailwater reaches. We sampled 2,730 Striped Bass using boat electrofishing and tagged with passive integrated transponder (PIT) tags to estimate demographic data using a capture-recapture model. A subset of these Striped Bass was tagged with angler reward tags (internal anchor tags, n = 681) and dual technology acoustic-radio telemetry tags (n = 111) to estimate exploitation and track movements, respectively. Anglers returned 116 tags from 2020 to 2022; and our angler reporting rate was estimated to be 14.3%. Annual harvest mortality is minimally 7% (unadjusted for reporting rate) but could be as high as 42% (i.e., adjusting for compliance; but this exceeds the measured total mortality rate (34.3%) so true exploitation is probably 7–34.3%). Our abundance estimates for Striped Bass varied seasonally (ranging from 782 to 38,597 seasonally) and had a high level of uncertainty likely due to relatively low recapture rates. Additionally, our results indicated that Striped Bass exhibited a strong fidelity to their respective habitats within seasons, with fidelity probabilities ranging from 0.98 to 1.00. Movement among segments was common among seasons, indicating these localized populations mix with a larger population annually. Striped Bass were primarily in tailwater habitats during summer. Delayed hooking mortality data were collected in summer 2022. Due to habitat conditions that year, angling catch rates were low. Twenty-nine Striped Bass were tagged, and only eight Striped Bass remained tagged long enough to be tracked at least one day. The total time tracked for these eight fish was between one and three days. There were no confirmed mortalities, treatment, or control. Because of the low sample size, literature values for delayed hooking mortality were also used to supplement field data in the models. The yield-per-recruit model indicated exploitation at 30% or higher leads to recruitment overfishing. A 600 mm minimum TL regulation and 25–30% exploitation rate achieve maximum yield (954 kg/1,000 recruits). Maximum yield related to an average size at harvest of 718-mm TL; thus, growth overfishing occurs for any regulation where average size of harvest is smaller than 718 mm (which the model predicted would occur for any minimum length < 600, and for minimum length = 600 if exploitation was > 30%, it never occurred with minimum length requirements > 650). Increasing the minimum length regulation improves size structure, but a maximum length regulation had minimal effect unless it was implemented at a sufficiently small size (i.e., < 700 mm). Although catch-and-release mortality can be relatively high at times in the literature, according to our model, it appears to have a small effect on size structure, except when exploitation rates are > 50% and a restrictive maximum size regulation (< 800 mm) is used. The current population appears sustainable, especially considering the annual mixing dynamics and apparently large population (though we see a lot of uncertainty in the population estimates). However, modeling indicates that if enhancing size structure is an agency priority, then implementing more restrictive regulations could be advantageous.

Oklahoma↗

USGS2000

From safe yield to sustainable development of water resources - The Kansas experience

This paper presents a synthesis of water sustainability issues from the hydrologic perspective. It shows that safe yield is a flawed concept and that sustainability is an idea that is broadly used but perhaps not well understood. In general, the sustainable yield of an aquifer must be considerably less than recharge if adequate amounts of water are to be available to sustain both the quantity and quality of streams, springs, wetlands, and ground-water-dependent ecosystems. To ensure sustainability, it is imperative that water limits be established based on hydrologic principles of mass balance. To establish water-use policies and planning horizons, the transition curves of aquifer systems from ground-water storage depletion to induced recharge of surface water need to be developed. Present-day numerical models are capable of generating such transition curves. Several idealized examples of aquifer systems show how this could be done. Because of the complexity of natural systems and the uncertainties in characterizing them, the current philosophy underlying sustainable management of water resources is based on the interconnected systems approach and on adaptive management. Examples of water-resources management from Kansas illustrate some of these concepts in a real-world setting. Some of the hallmarks of Kansas water management are the formation of local ground-water management districts, the adoption of minimum streamflow standards, the use of modified safe-yield policies in some districts, the implementation of integrated resource planning by the City of Wichita, and the subbasin water-resources management program in potential problem areas. These are all appropriate steps toward sustainable development. The Kansas examples show that local decision-making is the best way to fully account for local variability in water management. However, it is imperative that public education and involvement be encouraged, so that system complexities and constraints are better understood and overly simplistic solutions avoided. (C) 2000 Elsevier Science B.V.This paper presents a synthesis of water sustainability issues from the hydrologic perspective. It shows that safe yield is a flawed concept and that sustainability is an idea that is broadly used but perhaps not well understood. In general, the sustainable yield of an aquifer must be considerably less than recharge if adequate amounts of water are to be available to sustain both the quantity and quality of streams, springs, wetlands, and ground-water-dependent ecosystems. To ensure sustainability, it is imperative that water limits be established based on hydrologic principles of mass balance. To establish water-use policies and planning horizons, the transition curves of aquifer systems from ground-water storage depletion to induced recharge of surface water need to be developed. Present-day numerical models are capable of generating such transition curves. Several idealized examples of aquifer systems show how this could be done. Because of the complexity of natural systems and the uncertainties in characterizing them, the current philosophy underlying sustainable management of water resources is based on the interconnected systems approach and on adaptive management. Examples of water-resources management from Kansas illustrate some of these concepts in a real-world setting. Some of the hallmarks of Kansas water management are the formation of local ground-water management districts, the adoption of minimum streamflow standards, the use of modified safe-yield policies in some districts, the implementation of integrated resource planning by the City of Wichita, and the subbasin water-resources management program in potential problem areas. These are all appropriate steps toward sustainable development. The Kansas examples show that local decision-making is the best way to fully account for local variability in water management. However, it is imperative that public education and involv

Journal of Hydrology↗

USGS2021

Mid-latitude ice on Mars: A science target for planetary climate histories and an exploration target for in situ resources

In the last decade, aided by the high-resolution data and long-term monitoring by NASA’s Mars Reconnaissance Orbiter (MRO) and other spacecraft, extensive evidence has emerged supporting the presence of abundant H2O ground ice throughout much of the mid-latitudes of Mars. Growing evidence indicates that much of this ice is relatively pure, exists within a few meters of the surface, and reaches lower latitudes than previously thought, potentially providing an accessible record of the recent climate and a large in situ resource for future human exploration of Mars. We are reaching the limits of currently available datasets, however, just as we are starting to unlock the climate record and determine the water resources contained within the Martian mid-latitudes. A comprehensive understanding of the nature of this ice would significantly enhance our understanding of Mars’ climate history and total water budget, as well as the effects of orbital/axial forcing on volatiles. In this regard, Mars is a testbed for comparative planetary climate studies, including for exoplanets; these studies are particularly valuable because Mars has many similarities to Earth but lacks the complicating effects of oceans and a biosphere, such that orbital/axial forcing dominates climate variability. Quantifying the volumes, distribution, and properties of the water ice are crucial for addressing two overarching questions in the next decade: 1. What climate record is preserved in mid-latitude ice deposits on Mars? 2. How accessible is the ice as a resource for future exploration? New missions will enable us to capitalize on the major discoveries of the last decade and take the next giant leap in the upcoming decade to address these questions.

Bulletin of the AAS↗

USGS2025

U.S. Geological Survey science strategy to address highly pathogenic avian influenza and its effects on wildlife health 2025–29

Executive Summary Highly pathogenic avian influenza (HPAI) is an ecologically and economically important animal disease that can also directly affect humans (a “zoonotic” disease). HPAI was once limited almost exclusively to domestic poultry but has rapidly adapted to diverse animal hosts. Viruses causing HPAI now appear to be maintained and dispersed by wild birds largely independent of poultry, though HPAI continues to cause considerable economic losses and supply chain disruptions in the domestic poultry trade. Coincident with the adaptation of HPAI viruses to wild birds, particularly waterfowl and gulls, increasingly diverse wild bird hosts are becoming exposed to HPAI, often resulting in disease and death. More sporadically, HPAI has caused mass mortality events, particularly among seabirds. Furthermore, viral spillover to wild and domestic mammals has become more common. Spillover to wild mammals has resulted in mortality among diverse terrestrial and marine taxa, including episodic losses of such scale as to represent potential conservation challenges. Since approximately March 2024, HPAI has also affected dairy cows, which represents a new threat to the agricultural economy. Lastly, HPAI has increasingly affected humans through domestic animal exposures, exemplifying the considerable implications of this disease beyond animal health. Rapid changes in the ecology of HPAI are currently outpacing research efforts. For example, it is not entirely clear which newly established hosts may become reservoirs for HPAI viruses (in other words, capable of maintaining HPAI viruses within a broad population indefinitely) and how this may influence viral evolution and dissemination. As a result, there are considerable information gaps regarding HPAI in wildlife that, if filled, would improve the ability of scientists, managers, agricultural industry representatives, and healthcare professionals to understand and to anticipate the effects of HPAI on wild animal, domestic animal, environmental, and human health (“One Health”). The U.S. Geological Survey (USGS) is the lead Federal agency providing scientific research on avian influenza viruses (AIVs), including HPAI viruses, that affect wildlife for which the Department of the Interior (DOI) has management authority. States have jurisdiction over wildlife on Federal lands within their borders (43 CFR § 24.3), so the USGS Ecosystems Mission Area (EMA) coordinates with State natural resource management agencies. The EMA focuses its research on HPAI through priorities identified by the USGS Avian Influenza Science Team ( app. 1 ). Priorities identified by the USGS Avian Influenza Science Team are based on Administration priorities, Congressional direction, and discussions with State, Federal, and Tribal natural resource management agencies that identify specific scientific gaps that need to be filled to inform sound wildlife management decisions. Notable non-DOI Federal partners include the U.S. Department of Agriculture, the lead for the HPAI regulatory response in poultry and livestock, and the Centers for Disease Control and Prevention (CDC), the lead agency for the HPAI response pertaining to human health. The USGS offers unique expertise and capacity pertaining to research on diseases affecting free-ranging wildlife populations. This expertise has been critical to interjurisdictional surveillance and capacity-building efforts, including programs administered by the U.S. Department of Agriculture and the CDC. The USGS also provides resources, guidance, and tools to inform surveillance and interventions conducted by natural resource management agencies. More specifically, the USGS EMA provides objective and rigorous scientific data for inferring (1) the utility of new methods to detect and characterize AIVs, including those maintained in wildlife and the environment; (2) effects of HPAI on wildlife; (3) spatiotemporal patterns of wildlife host and AIV dispersal; (4) the presence and persistence of AIVs in the environment; (5) how HPAI in wildlife influences consumptive and nonconsumptive utilization of wildlife; (6) how new tools and scientific methods may promote sound management decisions for HPAI-affected wildlife, particularly species of conservation concern; and (7) the combined effects of HPAI and other stressors on ecosystem health and resiliency. This science strategy builds upon research outlined in a previous USGS science strategy for HPAI (2016–20) by Harris and others (2016) . This strategy also details research priorities identified by the Administration (for example, U.S. Department of Agriculture, 2025 ) and others based on USGS Avian Influenza Science Team discussions with natural resource management agencies to address HPAI and wildlife health over the next 5 years (2025–29). This strategy presents 7 goals and 26 objectives that focus USGS and partner efforts on priorities that will fill data gaps regarding the effects of HPAI on wildlife managed by or co-managed with the U.S. Department of the Interior such that agencies and partners might anticipate or limit adverse effects on public resources. This strategy also identifies research priorities intended to address HPAI in wildlife and wildlife habitat that are anticipated to support interjurisdictional One Health efforts.

Circular↗

USGS2025

Principles of riverscape health

Riverscapes are the integration of terrestrial and aquatic systems from headwaters to estuaries that provide habitat and ecosystem benefits when in good health. However, current riverscape degradation is pervasive, impairing the function and resulting benefits of these systems. Healthy riverscapes are adaptive and some can ‘heal’ after disturbance with minimal to no human assistance. As riverscape health is threatened, a need exists to address current degradation and understand the potential for riverscape restoration—concisely communicating what comprises healthy riverscapes is essential to direct limited resources and increase efficacy of restoration and conservation efforts. Healthy riverscapes have (i) space to interact within their valley bottom; (ii) natural flow, sediment, and vegetation regimes appropriate to the biophysical setting and river type; and (iii) structural forcing to support diversity and that creates varied residence times for water, sediment, and vegetation. These three principles are grounded in interdisciplinary science and lessons from riverscape scientists and restoration practitioners across the world. Understanding the context, anthropogenic influences, boundary conditions, and legacy effects influencing riverscapes is essential for the appropriate application of these principles in pursuit of achieving riverscape health. Emphasizing a holistic, biogeomorphic view of riverscapes through these principles can guide policies, restoration actions, and monitoring frameworks that ensure that riverscapes remain capable of accommodating and adjusting to disturbances while continuing to support biodiversity and human benefits.

WIREsWATER (Wiley Interdisciplinary Reviews Primer↗

USGS2026

Semantic segmentation of light-toned veins in multimodal ChemCam data

Since the Mars Science Laboratory landed in 2012, the ChemCam instrument aboard the rover has collected in-situ laser-induced breakdown spectroscopy (LIBS) data and context images along more than 35 km of the Gale Crater traverse, providing valuable observations including diagenetic features such as light-toned veins. These veins are of particular scientific interest because they are interpreted as indicators of past fluid circulation on Mars and provide insights into the evolution of habitability on Mars. Their identification, however, currently relies on manual visual inspection of Remote Micro Imager (RMI) images, a process that is time-consuming and sensitive to differences in human interpretation. To address this issue, in this paper we introduce a novel pixel-level labeled, multimodal dataset of ChemCam observations specifically tailored for vein detection, along with customized U-Net models to integrate both textural (RMI) and chemical (LIBS) modalities. To further ensure trustworthy scientific use, we incorporate the Learn-Then-Test (LTT) framework to provide statistical control of the false discovery rate without requiring model retraining. The experimental results demonstrate that the proposed customized U-Net models trained on the developed dataset, combined with risk-controlled prediction, increases the efficiency of pixel-level vein identification through automation and produces statistically reliable predictions for multimodal ChemCam data.

Scientific Reports↗

USGS2007

Consistency of L4 TM absolute calibration with respect to the L5 TM sensor based on near-simultaneous image acquisition

The Landsat archive provides more than 35 years of uninterrupted multispectral remotely sensed data of Earth observations. Since 1972, Landsat missions have carried different types of sensors, from the Return Beam Vidicon (RBV) camera to the Enhanced Thematic Mapper Plus (ETM+). However, the Thematic Mapper (TM) sensors on Landsat 4 (L4) and Landsat 5 (L5), launched in 1982 and 1984 respectively, are the backbone of an extensive archive. Effective April 2, 2007, the radiometric calibration of L5 TM data processed and distributed by the U.S. Geological Survey (USGS) Center for Earth Resources Observation and Science (EROS) was updated to use an improved lifetime gain model, based on the instrument's detector response to pseudo-invariant desert site data and cross-calibration with the L7 ETM+. However, no modifications were ever made to the radiometric calibration procedure of the Landsat 4 (L4) TM data. The L4 TM radiometric calibration procedure has continued to use the Internal Calibrator (IC) based calibration algorithms and the post calibration dynamic ranges, as previously defined. To evaluate the "current" absolute accuracy of these two sensors, image pairs from the L5 TM and L4 TM sensors were compared. The number of coincident image pairs in the USGS EROS archive is limited, so the scene selection for the cross-calibration studies proved to be a challenge. Additionally, because of the lack of near-simultaneous images available over well-characterized and traditionally used calibration sites, alternate sites that have high reflectance, large dynamic range, high spatial uniformity, high sun elevation, and minimal cloud cover were investigated. The alternate sites were identified in Yuma, Iraq, Egypt, Libya, and Algeria. The cross-calibration approach involved comparing image statistics derived from large common areas observed eight days apart by the two sensors. This paper summarizes the average percent differences in reflectance estimates obtained between the two sensors. The work presented in this paper is a first step in understanding the current performance of L4 TM absolute calibration and potentially serves as a platform to revise and improve the radiometric calibration procedures implemented for the processing of L4 TM data.

Conference Paper↗

USGS2017

Sharing our data—An overview of current (2016) USGS policies and practices for publishing data on ScienceBase and an example interactive mapping application

This report provides an overview of current (2016) U.S. Geological Survey policies and practices related to publishing data on ScienceBase, and an example interactive mapping application to display those data. ScienceBase is an integrated data sharing platform managed by the U.S. Geological Survey. This report describes resources that U.S. Geological Survey Scientists can use for writing data management plans, formatting data, and creating metadata, as well as for data and metadata review, uploading data and metadata to ScienceBase, and sharing metadata through the U.S. Geological Survey Science Data Catalog. Because data publishing policies and practices are evolving, scientists should consult the resources cited in this paper for definitive policy information. An example is provided where, using the content of a published ScienceBase data release that is associated with an interpretive product, a simple user interface is constructed to demonstrate how the open source capabilities of the R programming language and environment can interact with the properties and objects of the ScienceBase item and be used to generate interactive maps.

Open-File Report↗

USGS2023

Status and trends of the Lake Huron prey fish community, 1976-2022

The United States Geological Survey-Great Lakes Science Center has monitored annual changes in the offshore prey fish community of Lake Huron since 1973. Monitoring of prey fish populations in Lake Huron is based on a bottom trawl survey that targets demersal (benthic) species and an acoustic-midwater trawl survey that targets pelagic species and life stages. Status of the main basin prey fish community in 2022 was considered ‘Fair’ due to sustained improvements in native species status but species diversity that remains below desired levels. Current lake conditions, characterized by ongoing oligotrophication, seem to favor native coregonines like Bloater ( Coregonus artedi ), which in the main basin has exhibited signs of population growth and strong recruitment in recent years, and Cisco ( Coregonus artedi ), whose biomass in the North Channel increased for the second consecutive year in 2022. In contrast, conditions in the main basin are less favorable for exotic prey fish such as Alewife ( Alosa pseudoharengus ), whose population collapsed in 2014 and has not recovered, and Rainbow Smelt ( Osmerus mordax ), which remains the second-most abundant prey species in the main basin but has produced multiple weak year classes over the past decade including in 2022. Status of benthic prey fish in the main basin in 2022 depended on species. As in prior years, the native sculpin community in 2022 consisted primarily of Deepwater Sculpin ( Myoxocephalus thompsoni ) because Slimy Sculpin ( Cottus cognatus ) has become exceedingly rare. In contrast, biomass of the ecologically similar Round Goby ( Neogobius melanostomus ), an exotic species, reached an all-time high in 2022. Use of complementary surveys (bottom trawl, acoustics) remains important for evaluating prey fish status in Lake Huron, where prey fish community dynamics vary by basin and prey fish responses to changing environmental conditions depend on species and/or habitat.

Lake Huron↗

USGS2020

Using advanced population genomics to better understand the relationship between offshore and spawning habitat use for Atlantic Sturgeon

Atlantic Sturgeon ( Acipenser oxyrinchus oxyrinchus ) are a large-bodied anadromous fish that historically supported important fisheries along the east coast of the United States. Following years of overharvest and habitat degradation, populations experienced severe declines. In 2012, the National Marine Fisheries Service listed Atlantic Sturgeon under the Endangered Species Act (ESA; 61 FR 4722). Their listing named five Distinct Population Segments (DPSs), predicated on genetic groups composed of geographically proximate populations. Federal management of Atlantic Sturgeon presents challenges, as sturgeon from each of the five DPSs mix extensively in coastal and marine habitats yet take and recovery progress must be evaluated separately for each unit. Genetic assignment testing based on mitochondrial and microsatellite markers allows individuals to be assigned back to their natal river and DPS. However, this approach is not perfect and some individuals may be incorrectly assigned. Recent advances in genomics offer the potential of a higher resolution approach to genetic assignment testing, and thus may reduce uncertainty associated with assignment testing. In addition, genomics allows a greater number of markers to be examined from across a broader portion of the sturgeon genome, thus may provide an enhanced perspective of population structure for the species, and potentially allow other previously intractable questions to be addressed (Bernatchez et al. 2017, Supple and Shapiro 2018). We used next-generation sequencing to develop a draft genome for Atlantic Sturgeon and identify single nucleotide polymorphisms (SNPs) that could be used to resolve the natal river and DPS of individual Atlantic Sturgeon. We identified 1,210 candidate SNPs within the nuclear genome as well as 49 SNPs within the mitochondrial genome. After filtering and review, we selected 161 nuclear SNPs and 39 mitochondrial SNPs for further testing and evaluation. We used genotyping-in-thousands by sequencing (GT-seq) to simultaneously sequence nuclear SNP loci, mitochondrial SNP loci, and the existing panel of twelve microsatellite loci. This effort required a pilot sequencing run on a single sturgeon sample to test marker amplification and refine primer strengths, followed by a series of sequencing runs to generate baseline data for 288 individuals representing nine populations of Atlantic Sturgeon in four DPSs. Using baseline data from the nine populations, we ran a series of genomic analyses to characterize diversity within and among populations, providing a benchmark for this species using the new SNP markers. Allelic richness was similar for all populations, although there was a general trend of more northern population containing greater levels of allelic richness. Interestingly, we observed linkage disequilibrium among many pairs of loci within many populations. This might be the result of physical linkage but could also suggest these populations are recovering from genetic bottlenecks and/or are effectively small, leading to specific haplotypes to be favored by chance. Pairwise differentiation among populations varied among the populations ( F ST range: 0.010-0.098) and was significantly correlated ( r = 0.771; P < 0.001) to pairwise F ST observed using microsatellite markers). Population clustering and ordination techniques using the new genomic data both support an overall population structure that is similar to the current DPS management units (which were developed primarily based on microsatellite genetic data). Overall, this suggests that existing microsatellite markers and the panel of SNP markers developed in this study provide similar information about the populations structure and ecology of Atlantic Sturgeon. Given the observed differences in allele frequencies among populations, our genomic baseline supports previous assertations that Atlantic Sturgeon show natal homing, despite mixing extensively in marine waters during non-breeding periods. Lower levels of differentiation between populations in the South Atlantic DPS suggest that populations in this region may have greater levels of gene flow relative to their more northerly conspecifics, which has also previously been suggested based on microsatellite data. The observed differentiation among populations provides the necessary foundation for determining the natal river and DPS of Atlantic Sturgeon using assignment testing. We tested the utility of our new genomic baseline for resolving the population and DPS of Atlantic Sturgeon. Our nuclear SNP markers showed utility for identifying the origin of unknown Atlantic Sturgeon samples, as 86.5% were assigned to the correct DPS and 66.3% were assigned to the correct natal river. However, since this study was funded the Conservation Genetics and Genomics Laboratory at Leetown Science Center has made significant improvements to their microsatellite genetic baseline, which now performs more effectively than our new genomic approach (the genetic baseline includes 12 populations and 5 DPSs, and correctly assigns 95.8% of individuals to DPS and 84.9% of individuals to their natal population using 12 microsatellite loci). We conducted an ad hoc exploration of how additional microsatellite or nuclear SNP loci may further improve the accuracy of assignment testing. We found that additional microsatellite markers are likely to result in greater improvements in assignment efficiency than additional nuclear SNPs. However, a much larger number of SNP loci (which if identified could be sequenced using other methods that are now available; e.g., the RAD-capture approach published by Ali et al. 2016) could produce assignment efficiencies that are greater than what is currently feasible using microsatellites. In the absence of further research and development of additional SNP markers for Atlantic Sturgeon (possibly using an approach other than GT-seq), the existing microsatellite loci are the most effective means available to determine the natal river and DPS of Atlantic Sturgeon encountered in offshore waters. Because our new genomic markers were less effective than the existing panel of 12 microsatellite markers, we chose to use the existing microsatellite markers to assign Atlantic Sturgeon captured in another BOEM-funded study (cooperative agreement M16AC00003; Monitoring endangered Atlantic Sturgeon and commercial finfish habitat use offshore New York) following consultation with our project officer. Using this approach, we genotyped and assigned 186 Atlantic Sturgeon captured in coastal waters off the Rockaway Peninsula, New York. The vast majority of these sturgeon were assigned to the New York Bight DPS (94.62%), and most appear to belong to the Hudson River population (87.10%) with smaller contributions from the Delaware River population (7.53%). Smaller contributions (2.15%) were observed from six other populations, including those from the James, York, Kennebec, Ogeechee, and Edisto rivers. Although most of the fish we assigned were assigned to the nearest spawning rivers (Hudson and Delaware), the contributions from distant rivers is consistent with the propensity of this species to move long distances and form mixed stock aggregations along the continental shelf. This finding indicates that spawning populations (and their corresponding DPS) from distant locations may potentially be impacted by offshore activities. In fact, activities in this region of the New York Bight could negatively impact Atlantic Sturgeon population from at least four different DPSs. Genetic or genomic assignment testing remains an essential tool to characterize potential impacts to Atlantic Sturgeon populations and should be applied more broadly to better characterize potential impacts of activities in other locations.

Atlantic Coast↗

USGS2022

Comparison of radium analytical methods for municipal drinking water well operation

Radium (Ra) is a geogenic contaminant that occurs at high levels in the Midwestern Cambrian-Ordovician aquifer system (MCOAS), a regionally important sandstone and carbonate drinking water aquifer. Water utilities using the MCOAS often must adopt treatment methods or use alternative water sources to maintain high-quality drinking water. Here, we show that Ra in water obtained from a municipal well in Wisconsin remains consistent despite variation in pumping conditions. However, widely used analytical methods (e.g., scintillation counting) for measuring Ra are less precise for quantifying Ra variability given the site conditions. Although not currently used for EPA compliance, mass spectrometry improves the precision of Ra measurements by an order of magnitude over the currently used counting method (e.g., 95 ± 3 mBq/L vs. 110 ± 30 mBq/L) at the concentrations observed in this study. The use of more precise analytical methods will increase understanding of trends in Ra levels important for operating public water systems.

Water Science and Engineering↗

USGS1996

Anthropogenic sediment resuspension mechanisms in a shallow microtidal estuary

The mechanisms that resuspend bottom sediments in Hillsborough Bay, a shallow, microtidal, subtropical estuary in West-central Florida, were determined by analysing hydrodynamic and suspended-solids concentration data collected during several instrument deployments made in 1990 and 1991. Large vessels in a dredged ship channel can generate forced solitary long waves that cause large water velocities and sediment resuspension at the study sites. An experiment was conducted with a trawler that resuspended bottom sediments, and some of the resuspended sediments remained in suspension for at least 8 h. A secondary impact of vessel-generated long waves and trawling is that sediments that are resuspended and newly deposited are more susceptible to resuspension by tidal currents than undisturbed bottom sediments. Natural sediment resuspension by wind waves and tidal current is less frequent or of smaller magnitude than anthropogenic sediment resuspension. The annual mass of sediment resuspended by vessel-generated long waves is estimated to be one order of magnitude greater than the annual mass of sediment resuspended by wind waves generated by winter storms.

Estuarine, Coastal and Shelf Science↗

USGS1980

Declination and inclination errors in experimentally deposited specularite-bearing sand

Naturally disaggregated specularite-bearing sandstone from the Triassic Moenkopi Formation, artificially deposited in controlled magnetic fields of ∼5 × 10 −2 mT, acquires a stable remanent magnetization that has systematic errors in inclination and declination. Inclinations about 12° shallower than the applied fields are produced by deposition on a horizontal surface in still water. Deposition from flowing water on a surface inclined 6–10° results in inclination errors of as much as 20°. Water flowing obliquely to the applied field results in declination errors of about 10°, with declinations systematically rotated toward the upstream direction of current flow. These experimental results indicate that specularite-bearing sediment responds to the earth's field in a manner similar to magnetite-bearing sediment, and support observational evidence for a primary magnetization of depositional origin in specularite in red beds of the Moenkopi Formation.

Earth and Planetary Science Letters↗

USGS2013

Trends in concentrations of nitrate and total dissolved solids in public supply wells of the Bunker Hill, Lytle, Rialto, and Colton groundwater subbasins, San Bernardino County, California: Influence of legacy land use

Concentrations and temporal changes in concentrations of nitrate and total dissolved solids (TDS) in groundwater of the Bunker Hill, Lytle, Rialto, and Colton groundwater subbasins of the Upper Santa Ana Valley Groundwater Basin were evaluated to identify trends and factors that may be affecting trends. One hundred, thirty-one public-supply wells were selected for analysis based on the availability of data spanning at least 11 years between the late 1980s and the 2000s. Forty-one of the 131 wells (31%) had a significant (p < 0.10) increase in nitrate and 14 wells (11%) had a significant decrease in nitrate. For TDS, 46 wells (35%) had a significant increase and 8 wells (6%) had a significant decrease. Slopes for the observed significant trends ranged from − 0.44 to 0.91 mg/L/yr for nitrate (as N) and − 8 to 13 mg/L/yr for TDS. Increasing nitrate trends were associated with greater well depth, higher percentage of agricultural land use, and being closer to the distal end of the flow system. Decreasing nitrate trends were associated with the occurrence of volatile organic compounds (VOCs); VOC occurrence decreases with increasing depth. The relations of nitrate trends to depth, lateral position, and VOCs imply that increasing nitrate concentrations are associated with nitrate loading from historical agricultural land use and that more recent urban land use is generally associated with lower nitrate concentrations and greater VOC occurrence. Increasing TDS trends were associated with relatively greater current nitrate concentrations and relatively greater amounts of urban land. Decreasing TDS trends were associated with relatively greater amounts of natural land use. Trends in TDS concentrations were not related to depth, lateral position, or VOC occurrence, reflecting more complex factors affecting TDS than nitrate in the study area.

California↗

USGS2006

Modeling the probability of arsenic in groundwater in New England as a tool for exposure assessment

We developed a process-based model to predict the probability of arsenic exceeding 5 ??g/L in drinking water wells in New England bedrock aquifers. The model is being used for exposure assessment in an epidemiologic study of bladder cancer. One important study hypothesis that may explain increased bladder cancer risk is elevated concentrations of inorganic arsenic in drinking water. In eastern New England, 20-30% of private wells exceed the arsenic drinking water standard of 10 micrograms per liter. Our predictive model significantly improves the understanding of factors associated with arsenic contamination in New England. Specific rock types, high arsenic concentrations in stream sediments, geochemical factors related to areas of Pleistocene marine inundation and proximity to intrusive granitic plutons, and hydrologic and landscape variables relating to groundwater residence time increase the probability of arsenic occurrence in groundwater. Previous studies suggest that arsenic in bedrock groundwater may be partly from past arsenical pesticide use. Variables representing historic agricultural inputs do not improve the model, indicating that this source does not significantly contribute to current arsenic concentrations. Due to the complexity of the fractured bedrock aquifers in the region, well depth and related variables also are not significant predictors. ?? 2006 American Chemical Society.

Environmental Science & Technology↗

USGS2020

Spatial proximity moderates genotype uncertainty in genetic tagging studies

Accelerating declines of an increasing number of animal populations worldwide necessitate methods to reliably and efficiently estimate demographic parameters such as population density and trajectory. Standard methods for estimating demographic parameters from noninvasive genetic samples are inefficient because lower-quality samples cannot be used, and they assume individuals are identified without error. We introduce the genotype spatial partial identity model (gSPIM), which integrates a genetic classification model with a spatial population model to combine both spatial and genetic information, thus reducing genotype uncertainty and increasing the precision of demographic parameter estimates. We apply this model to data from a study of fishers ( Pekania pennanti ) in which 37% of hair samples were originally discarded because of uncertainty in individual identity. The gSPIM density estimate using all collected samples was 25% more precise than the original density estimate, and the model identified and corrected three errors in the original individual identity assignments. A simulation study demonstrated that our model increased the accuracy and precision of density estimates 63 and 42%, respectively, using three replicated assignments (e.g., PCRs for microsatellites) per genetic sample. Further, the simulations showed that the gSPIM model parameters are identifiable with only one replicated assignment per sample and that accuracy and precision are relatively insensitive to the number of replicated assignments for high-quality samples. Current genotyping protocols devote the majority of resources to replicating and confirming high-quality samples, but when using the gSPIM, genotyping protocols could be more efficient by devoting more resources to low-quality samples.

Proceedings of the National Academy of Sciences↗

USGS2015

Summary of hydrologic conditions in Kansas, water year 2014

The U.S. Geological Survey Kansas Water Science Center, in cooperation with Federal, State, and local agencies, maintains a long-term network of hydrologic monitoring gages in the State of Kansas. These include 206 real-time streamgages, 12 real-time reservoir-level monitoring stations, and 32 groundwater monitoring wells. These data and associated analyses, accumulated over time, provide a unique overview of hydrologic conditions and help improve our understanding of Kansas’s water resources. Yearly hydrologic conditions are determined by comparing statistical analyses of current and historical water year data for the period of record. These data are used in protecting life and property, and managing water resources for agricultural, industrial, public supply, ecological, and recreational purposes.

Kansas↗

USGS2017

Science advancements key to increasing management value of life stage monitoring networks for endangered Sacramento River winter-run Chinook salmon in California

A robust monitoring network that provides quantitative information about the status of imperiled species at key life stages and geographic locations over time is fundamental for sustainable management of fisheries resources. For anadromous species, management actions in one geographic domain can substantially affect abundance of subsequent life stages that span broad geographic regions. Quantitative metrics (e.g., abundance, movement, survival, life history diversity, and condition) at multiple life stages are needed to inform how management actions (e.g., hatcheries, harvest, hydrology, and habitat restoration) influence salmon population dynamics. The existing monitoring network for endangered Sacramento River winterrun Chinook Salmon (SRWRC, Oncorhynchus tshawytscha) in California’s Central Valley was compared to conceptual models developed for each life stage and geographic region of the life cycle to identify relevant SRWRC metrics. We concluded that the current monitoring network was insufficient to diagnose when (life stage) and where (geographic domain) chronic or episodic reductions in SRWRC cohorts occur, precluding within- and among-year comparisons. The strongest quantitative data exist in the Upper Sacramento River, where abundance estimates are generated for adult spawners and emigrating juveniles. However, once SRWRC leave the upper river, our knowledge of their identity, abundance, and condition diminishes, despite the juvenile monitoring enterprise. We identified six system-wide recommended actions to strengthen the value of data generated from the existing monitoring network to assess resource management actions: (1) incorporate genetic run identification; (2) develop juvenile abundance estimates; (3) collect data for life history diversity metrics at multiple life stages; (4) expand and enhance real-time fish survival and movement monitoring; (5) collect fish condition data; and (6) provide timely public access to monitoring data in open data formats. To illustrate how updated technologies can enhance the existing monitoring to provide quantitative data on SRWRC, we provide examples of how each recommendation can address specific management issues.

California↗